sequenceserver 2.0.0 → 2.1.0

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Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
  217. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
  218. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
  219. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
  223. data/public/vendor/npm/scheduler@0.21.0.js +1 -0
  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
  238. data/public/vendor/npm/util@0.10.3.js +1 -1
  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
  252. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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@@ -1,386 +0,0 @@
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3
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5
- var nonWhiteRegexp = /(\S)/g;
6
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- return {
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- parentNode: rootNode,
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- parentScope: null,
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- tempVarIndex: 0,
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- g: {
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- sourceLine: 1,
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- bufferColumn: 0
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- }
39
- };
40
- }
41
- function updateState(state, update) {
42
- var ret = Object.create(state);
43
- Object.keys(update).forEach(function(updatedKey) {
44
- ret[updatedKey] = update[updatedKey];
45
- });
46
- return ret;
47
- }
48
- function catchup(end, state, contentTransformer) {
49
- if (end < state.g.position) {
50
- return;
51
- }
52
- var source = state.g.source.substring(state.g.position, end);
53
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54
- if (state.g.sourceMap && transformed) {
55
- state.g.sourceMap.addMapping({
56
- generated: {
57
- line: state.g.bufferLine,
58
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62
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63
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65
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66
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67
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68
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69
- state.g.sourceMap.addMapping({
70
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71
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72
- column: 0
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75
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76
- column: 0
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- source: state.g.sourceMapFilename
79
- });
80
- state.g.sourceLine++;
81
- state.g.bufferLine++;
82
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- if (sourceLines.length > 1) {
84
- state.g.sourceLine++;
85
- state.g.bufferLine++;
86
- state.g.sourceColumn = 0;
87
- state.g.bufferColumn = 0;
88
- }
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- state.g.sourceColumn += sourceLines[sourceLines.length - 1].length;
90
- state.g.bufferColumn += transformedLines[transformedLines.length - 1].length;
91
- }
92
- state.g.buffer += contentTransformer ? contentTransformer(transformed) : transformed;
93
- state.g.position = end;
94
- }
95
- function getNodeSourceText(node, state) {
96
- return state.g.source.substring(node.range[0], node.range[1]);
97
- }
98
- function _replaceNonWhite(value) {
99
- return value.replace(nonWhiteRegexp, ' ');
100
- }
101
- function _stripNonWhite(value) {
102
- return value.replace(nonWhiteRegexp, '');
103
- }
104
- function getNextSyntacticCharOffset(char, state) {
105
- var pendingSource = state.g.source.substring(state.g.position);
106
- var pendingSourceLines = pendingSource.split('\n');
107
- var charOffset = 0;
108
- var line;
109
- var withinBlockComment = false;
110
- var withinString = false;
111
- lineLoop: while ((line = pendingSourceLines.shift()) !== undefined) {
112
- var lineEndPos = charOffset + line.length;
113
- charLoop: for (; charOffset < lineEndPos; charOffset++) {
114
- var currChar = pendingSource[charOffset];
115
- if (currChar === '"' || currChar === '\'') {
116
- withinString = !withinString;
117
- continue charLoop;
118
- } else if (withinString) {
119
- continue charLoop;
120
- } else if (charOffset + 1 < lineEndPos) {
121
- var nextTwoChars = currChar + line[charOffset + 1];
122
- if (nextTwoChars === '//') {
123
- charOffset = lineEndPos + 1;
124
- continue lineLoop;
125
- } else if (nextTwoChars === '/*') {
126
- withinBlockComment = true;
127
- charOffset += 1;
128
- continue charLoop;
129
- } else if (nextTwoChars === '*/') {
130
- withinBlockComment = false;
131
- charOffset += 1;
132
- continue charLoop;
133
- }
134
- }
135
- if (!withinBlockComment && currChar === char) {
136
- return charOffset + state.g.position;
137
- }
138
- }
139
- charOffset++;
140
- withinString = false;
141
- }
142
- throw new Error('`' + char + '` not found!');
143
- }
144
- function catchupWhiteOut(end, state) {
145
- catchup(end, state, _replaceNonWhite);
146
- }
147
- function catchupWhiteSpace(end, state) {
148
- catchup(end, state, _stripNonWhite);
149
- }
150
- var reNonNewline = /[^\n]/g;
151
- function stripNonNewline(value) {
152
- return value.replace(reNonNewline, function() {
153
- return '';
154
- });
155
- }
156
- function catchupNewlines(end, state) {
157
- catchup(end, state, stripNonNewline);
158
- }
159
- function move(end, state) {
160
- if (state.g.sourceMap) {
161
- if (end < state.g.position) {
162
- state.g.position = 0;
163
- state.g.sourceLine = 1;
164
- state.g.sourceColumn = 0;
165
- }
166
- var source = state.g.source.substring(state.g.position, end);
167
- var sourceLines = source.split('\n');
168
- if (sourceLines.length > 1) {
169
- state.g.sourceLine += sourceLines.length - 1;
170
- state.g.sourceColumn = 0;
171
- }
172
- state.g.sourceColumn += sourceLines[sourceLines.length - 1].length;
173
- }
174
- state.g.position = end;
175
- }
176
- function append(str, state) {
177
- if (state.g.sourceMap && str) {
178
- state.g.sourceMap.addMapping({
179
- generated: {
180
- line: state.g.bufferLine,
181
- column: state.g.bufferColumn
182
- },
183
- original: {
184
- line: state.g.sourceLine,
185
- column: state.g.sourceColumn
186
- },
187
- source: state.g.sourceMapFilename
188
- });
189
- var transformedLines = str.split('\n');
190
- if (transformedLines.length > 1) {
191
- state.g.bufferLine += transformedLines.length - 1;
192
- state.g.bufferColumn = 0;
193
- }
194
- state.g.bufferColumn += transformedLines[transformedLines.length - 1].length;
195
- }
196
- state.g.buffer += str;
197
- }
198
- function updateIndent(str, state) {
199
- var indentBy = state.indentBy;
200
- if (indentBy < 0) {
201
- for (var i = 0; i < -indentBy; i++) {
202
- str = str.replace(leadingIndentRegexp, '$1');
203
- }
204
- } else {
205
- for (var i = 0; i < indentBy; i++) {
206
- str = str.replace(leadingIndentRegexp, '$1$2$2');
207
- }
208
- }
209
- return str;
210
- }
211
- function indentBefore(start, state) {
212
- var end = start;
213
- start = start - 1;
214
- while (start > 0 && state.g.source[start] != '\n') {
215
- if (!state.g.source[start].match(/[ \t]/)) {
216
- end = start;
217
- }
218
- start--;
219
- }
220
- return state.g.source.substring(start + 1, end);
221
- }
222
- function getDocblock(state) {
223
- if (!state.g.docblock) {
224
- var docblock = require("./docblock");
225
- state.g.docblock = docblock.parseAsObject(docblock.extract(state.g.source));
226
- }
227
- return state.g.docblock;
228
- }
229
- function identWithinLexicalScope(identName, state, stopBeforeNode) {
230
- var currScope = state.localScope;
231
- while (currScope) {
232
- if (currScope.identifiers[identName] !== undefined) {
233
- return true;
234
- }
235
- if (stopBeforeNode && currScope.parentNode === stopBeforeNode) {
236
- break;
237
- }
238
- currScope = currScope.parentScope;
239
- }
240
- return false;
241
- }
242
- function identInLocalScope(identName, state) {
243
- return state.localScope.identifiers[identName] !== undefined;
244
- }
245
- function initScopeMetadata(boundaryNode, path, node) {
246
- return {
247
- boundaryNode: boundaryNode,
248
- bindingPath: path,
249
- bindingNode: node
250
- };
251
- }
252
- function declareIdentInLocalScope(identName, metaData, state) {
253
- state.localScope.identifiers[identName] = {
254
- boundaryNode: metaData.boundaryNode,
255
- path: metaData.bindingPath,
256
- node: metaData.bindingNode,
257
- state: Object.create(state)
258
- };
259
- }
260
- function getLexicalBindingMetadata(identName, state) {
261
- var currScope = state.localScope;
262
- while (currScope) {
263
- if (currScope.identifiers[identName] !== undefined) {
264
- return currScope.identifiers[identName];
265
- }
266
- currScope = currScope.parentScope;
267
- }
268
- }
269
- function getLocalBindingMetadata(identName, state) {
270
- return state.localScope.identifiers[identName];
271
- }
272
- function analyzeAndTraverse(analyzer, traverser, node, path, state) {
273
- if (node.type) {
274
- if (analyzer(node, path, state) === false) {
275
- return;
276
- }
277
- path.unshift(node);
278
- }
279
- getOrderedChildren(node).forEach(function(child) {
280
- traverser(child, path, state);
281
- });
282
- node.type && path.shift();
283
- }
284
- function getOrderedChildren(node) {
285
- var queue = [];
286
- for (var key in node) {
287
- if (node.hasOwnProperty(key)) {
288
- enqueueNodeWithStartIndex(queue, node[key]);
289
- }
290
- }
291
- queue.sort(function(a, b) {
292
- return a[1] - b[1];
293
- });
294
- return queue.map(function(pair) {
295
- return pair[0];
296
- });
297
- }
298
- function enqueueNodeWithStartIndex(queue, node) {
299
- if (typeof node !== 'object' || node === null) {
300
- return;
301
- }
302
- if (node.range) {
303
- queue.push([node, node.range[0]]);
304
- } else if (Array.isArray(node)) {
305
- for (var ii = 0; ii < node.length; ii++) {
306
- enqueueNodeWithStartIndex(queue, node[ii]);
307
- }
308
- }
309
- }
310
- function containsChildOfType(node, type) {
311
- return containsChildMatching(node, function(node) {
312
- return node.type === type;
313
- });
314
- }
315
- function containsChildMatching(node, matcher) {
316
- var foundMatchingChild = false;
317
- function nodeTypeAnalyzer(node) {
318
- if (matcher(node) === true) {
319
- foundMatchingChild = true;
320
- return false;
321
- }
322
- }
323
- function nodeTypeTraverser(child, path, state) {
324
- if (!foundMatchingChild) {
325
- foundMatchingChild = containsChildMatching(child, matcher);
326
- }
327
- }
328
- analyzeAndTraverse(nodeTypeAnalyzer, nodeTypeTraverser, node, []);
329
- return foundMatchingChild;
330
- }
331
- var scopeTypes = {};
332
- scopeTypes[Syntax.ArrowFunctionExpression] = true;
333
- scopeTypes[Syntax.FunctionExpression] = true;
334
- scopeTypes[Syntax.FunctionDeclaration] = true;
335
- scopeTypes[Syntax.Program] = true;
336
- function getBoundaryNode(path) {
337
- for (var ii = 0; ii < path.length; ++ii) {
338
- if (scopeTypes[path[ii].type]) {
339
- return path[ii];
340
- }
341
- }
342
- throw new Error('Expected to find a node with one of the following types in path:\n' + JSON.stringify(Object.keys(scopeTypes)));
343
- }
344
- function getTempVar(tempVarIndex) {
345
- return '$__' + tempVarIndex;
346
- }
347
- function injectTempVar(state) {
348
- var tempVar = '$__' + (state.localScope.tempVarIndex++);
349
- state.localScope.tempVars.push(tempVar);
350
- return tempVar;
351
- }
352
- function injectTempVarDeclarations(state, index) {
353
- if (state.localScope.tempVars.length) {
354
- state.g.buffer = state.g.buffer.slice(0, index) + 'var ' + state.localScope.tempVars.join(', ') + ';' + state.g.buffer.slice(index);
355
- state.localScope.tempVars = [];
356
- }
357
- }
358
- exports.analyzeAndTraverse = analyzeAndTraverse;
359
- exports.append = append;
360
- exports.catchup = catchup;
361
- exports.catchupNewlines = catchupNewlines;
362
- exports.catchupWhiteOut = catchupWhiteOut;
363
- exports.catchupWhiteSpace = catchupWhiteSpace;
364
- exports.containsChildMatching = containsChildMatching;
365
- exports.containsChildOfType = containsChildOfType;
366
- exports.createState = createState;
367
- exports.declareIdentInLocalScope = declareIdentInLocalScope;
368
- exports.getBoundaryNode = getBoundaryNode;
369
- exports.getDocblock = getDocblock;
370
- exports.getLexicalBindingMetadata = getLexicalBindingMetadata;
371
- exports.getLocalBindingMetadata = getLocalBindingMetadata;
372
- exports.getNextSyntacticCharOffset = getNextSyntacticCharOffset;
373
- exports.getNodeSourceText = getNodeSourceText;
374
- exports.getOrderedChildren = getOrderedChildren;
375
- exports.getTempVar = getTempVar;
376
- exports.identInLocalScope = identInLocalScope;
377
- exports.identWithinLexicalScope = identWithinLexicalScope;
378
- exports.indentBefore = indentBefore;
379
- exports.initScopeMetadata = initScopeMetadata;
380
- exports.injectTempVar = injectTempVar;
381
- exports.injectTempVarDeclarations = injectTempVarDeclarations;
382
- exports.move = move;
383
- exports.scopeTypes = scopeTypes;
384
- exports.updateIndent = updateIndent;
385
- exports.updateState = updateState;
386
- })(require("buffer").Buffer, require("process"));
@@ -1,57 +0,0 @@
1
- /* */
2
- require("mock-modules").autoMockOff();
3
- describe('es6ArrowFunctionsTransform', function() {
4
- var transformFn;
5
- var visitors;
6
- beforeEach(function() {
7
- require("mock-modules").dumpCache();
8
- visitors = require("../es6-arrow-function-visitors").visitorList;
9
- transformFn = require("../../src/jstransform").transform;
10
- });
11
- function transform(code) {
12
- return transformFn(visitors, code).code;
13
- }
14
- function expectTransform(code, result) {
15
- expect(transform(code)).toEqual(result);
16
- }
17
- it('should capture correct this value at different levels', function() {
18
- var code = transform(['var foo = {', ' createFooGetter: function() {', ' return (x) => [x, this];', ' },', ' getParentThis: () => this', '};'].join('\n'));
19
- eval(code);
20
- expect(typeof foo.createFooGetter).toBe('function');
21
- expect(typeof foo.createFooGetter()).toBe('function');
22
- expect(typeof foo.getParentThis).toBe('function');
23
- expect(foo.getParentThis()).toEqual(this);
24
- expect(foo.createFooGetter()(10)).toEqual([10, foo]);
25
- });
26
- it('should map an array using arrow capturing this value', function() {
27
- this.factor = 10;
28
- var code = transform('[1, 2, 3].map(x => x * x * this.factor);');
29
- expect(eval(code)).toEqual([10, 40, 90]);
30
- });
31
- it('binds if any `super` keyword is referenced', function() {
32
- var code = transform('var fn=x=>super;');
33
- expect(code).toEqual('var fn=function(x){return super;}.bind(this);');
34
- });
35
- it('should filter an array using arrow with two params', function() {
36
- this.factor = 0;
37
- var code = transform(['[1, 2, 3].filter((v, idx) => {', ' if (idx > 1 && this.factor > 0) {', ' return true;', ' }', ' this.factor++;', ' return false;', '});'].join('\n'));
38
- expect(eval(code)).toEqual([3]);
39
- });
40
- it('should fetch this value data from nested arrow', function() {
41
- var code = transform(['({', ' bird: 22,', ' run: function() {', ' return () => () => this.bird;', ' }', '}).run()()();'].join('\n'));
42
- expect(eval(code)).toEqual(22);
43
- });
44
- it('should correctly transform arrows', function() {
45
- expectTransform('() => this.value;', '(function() {return this.value;}.bind(this));');
46
- expectTransform('() => (this.value);', '(function() {return this.value;}.bind(this));');
47
- expectTransform('x => x * x;', '(function(x) {return x * x;});');
48
- expectTransform('map((x) => x * x);', 'map(function(x) {return x * x;});');
49
- expectTransform('makeRequest((response, error) => {'.concat(' return this.update(data => this.onData(data), response);', '});'), 'makeRequest(function(response, error) {'.concat(' return this.update(function(data) {return this.onData(data);}.bind(this), response);', '}.bind(this));'));
50
- expectTransform('var action = (value) => this.performAction(value);', 'var action = function(value) {return this.performAction(value);}.bind(this);');
51
- expectTransform(['(', '', '', ' x,', ' y', '', ')', '', ' =>', '', ' {', ' return x + y;', '};'].join('\n'), ['(function(', '', '', ' x,', ' y)', '', '', '', ' ', '', ' {', ' return x + y;', '});'].join('\n'));
52
- expectTransform(['x', '', ' =>', ' x;'].join('\n'), ['(function(x)', '', ' ', ' {return x;});'].join('\n'));
53
- expectTransform(['(', '', ' x', '', ')', '', ' =>', ' x;'].join('\n'), ['(function(', '', ' x)', '', '', '', ' ', ' {return x;});'].join('\n'));
54
- expectTransform(['(x) => (', ' x', ');'].join('\n'), ['(function(x) ', ' {return x;}', ');'].join('\n'));
55
- expectTransform('(/*string*/foo, /*bool*/bar) => foo;', '(function(/*string*/foo, /*bool*/bar) {return foo;});');
56
- });
57
- });
@@ -1,46 +0,0 @@
1
- /* */
2
- require("mock-modules").autoMockOff();
3
- describe('es6-call-spread-visitors', function() {
4
- var transformFn;
5
- var visitors;
6
- beforeEach(function() {
7
- require("mock-modules").dumpCache();
8
- transformFn = require("../../src/jstransform").transform;
9
- visitors = require("../es6-call-spread-visitors").visitorList;
10
- });
11
- function transform(code, options) {
12
- return transformFn(visitors, code, options).code;
13
- }
14
- it('should spread given data with context', function() {
15
- expect(transform('Math.max(1,\t[2], 3, ...[4, 5, 6])')).toEqual('var $__0;($__0 = Math).max.apply($__0, [1,\t[2], 3].concat([4, 5, 6]))');
16
- });
17
- it('should avoid unnecessary concat call', function() {
18
- expect(transform('window.Math.max(...list)')).toEqual('var $__0;($__0 = window.Math).max.apply($__0, list)');
19
- });
20
- it('should default to null context', function() {
21
- expect(transform('max(1, 2, ...list)')).toEqual('max.apply(null, [1, 2].concat(list))');
22
- });
23
- it('should handle computed method names', function() {
24
- expect(transform('Math["m" + (0 ? "in" : "ax")](1, 2, ...list)')).toEqual('var $__0;($__0 = Math)["m" + (0 ? "in" : "ax")].apply($__0, [1, 2].concat(list))');
25
- });
26
- it('should handle immediately invoked function expressions', function() {
27
- expect(transform('(function(a, b, c) { return a+b+c; })(1, 2, ...more)')).toEqual('(function(a, b, c) { return a+b+c; }).apply(null, [1, 2].concat(more))');
28
- });
29
- it('should spread while creating new instances', function() {
30
- expect(transform('new Set(1, 2, ...list)')).toEqual('new (Function.prototype.bind.apply(Set, [null, 1, 2].concat(list)))');
31
- });
32
- it('should create temporary variables when necessary in program scope', function() {
33
- expect(transform('foo().bar(arg1, arg2, ...more)')).toEqual('var $__0;($__0 = foo()).bar.apply($__0, [arg1, arg2].concat(more))');
34
- });
35
- it('should create temporary variables when necessary in function scope', function() {
36
- expect(transform('function fn(){ return foo().bar(arg1, arg2, ...more); }')).toEqual('function fn(){var $__0; return ($__0 = foo()).bar.apply($__0, [arg1, arg2].concat(more)); }');
37
- });
38
- it('should not evaluate context more than once', function() {
39
- var code = transform(['var obj = {', ' calls: 0,', ' get context() {', ' this.calls++;', ' return {', ' add: function(a, b) { return a + b; }', ' };', ' }', '};', 'var nums = [1, 2];', 'obj.context.add(...nums);', 'obj.calls === 1;'].join('\n'));
40
- expect(eval(code)).toEqual(true);
41
- });
42
- it('should transform nested spread expressions', function() {
43
- var code = transform(['function getBase() {', ' return {', ' getParams: function(a, b) {', ' return [a, b];', ' }', ' };', '}', '[].concat(...getBase().getParams(...[1, 2, 3])).join(" ");'].join('\n'));
44
- expect(eval(code)).toEqual("1 2");
45
- });
46
- });