sequenceserver 2.0.0 → 2.1.0
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- checksums.yaml +4 -4
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +36 -30
- data/lib/sequenceserver/config.rb +49 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/routes.rb +69 -7
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +2 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +1 -0
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +315 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +99 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +41 -0
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
- data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/10.js +1 -1
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|
168
|
-
if (sourceLines.length > 1) {
|
169
|
-
state.g.sourceLine += sourceLines.length - 1;
|
170
|
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state.g.sourceColumn = 0;
|
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|
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}
|
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|
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state.g.sourceColumn += sourceLines[sourceLines.length - 1].length;
|
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|
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}
|
174
|
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state.g.position = end;
|
175
|
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}
|
176
|
-
function append(str, state) {
|
177
|
-
if (state.g.sourceMap && str) {
|
178
|
-
state.g.sourceMap.addMapping({
|
179
|
-
generated: {
|
180
|
-
line: state.g.bufferLine,
|
181
|
-
column: state.g.bufferColumn
|
182
|
-
},
|
183
|
-
original: {
|
184
|
-
line: state.g.sourceLine,
|
185
|
-
column: state.g.sourceColumn
|
186
|
-
},
|
187
|
-
source: state.g.sourceMapFilename
|
188
|
-
});
|
189
|
-
var transformedLines = str.split('\n');
|
190
|
-
if (transformedLines.length > 1) {
|
191
|
-
state.g.bufferLine += transformedLines.length - 1;
|
192
|
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state.g.bufferColumn = 0;
|
193
|
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}
|
194
|
-
state.g.bufferColumn += transformedLines[transformedLines.length - 1].length;
|
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|
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}
|
196
|
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state.g.buffer += str;
|
197
|
-
}
|
198
|
-
function updateIndent(str, state) {
|
199
|
-
var indentBy = state.indentBy;
|
200
|
-
if (indentBy < 0) {
|
201
|
-
for (var i = 0; i < -indentBy; i++) {
|
202
|
-
str = str.replace(leadingIndentRegexp, '$1');
|
203
|
-
}
|
204
|
-
} else {
|
205
|
-
for (var i = 0; i < indentBy; i++) {
|
206
|
-
str = str.replace(leadingIndentRegexp, '$1$2$2');
|
207
|
-
}
|
208
|
-
}
|
209
|
-
return str;
|
210
|
-
}
|
211
|
-
function indentBefore(start, state) {
|
212
|
-
var end = start;
|
213
|
-
start = start - 1;
|
214
|
-
while (start > 0 && state.g.source[start] != '\n') {
|
215
|
-
if (!state.g.source[start].match(/[ \t]/)) {
|
216
|
-
end = start;
|
217
|
-
}
|
218
|
-
start--;
|
219
|
-
}
|
220
|
-
return state.g.source.substring(start + 1, end);
|
221
|
-
}
|
222
|
-
function getDocblock(state) {
|
223
|
-
if (!state.g.docblock) {
|
224
|
-
var docblock = require("./docblock");
|
225
|
-
state.g.docblock = docblock.parseAsObject(docblock.extract(state.g.source));
|
226
|
-
}
|
227
|
-
return state.g.docblock;
|
228
|
-
}
|
229
|
-
function identWithinLexicalScope(identName, state, stopBeforeNode) {
|
230
|
-
var currScope = state.localScope;
|
231
|
-
while (currScope) {
|
232
|
-
if (currScope.identifiers[identName] !== undefined) {
|
233
|
-
return true;
|
234
|
-
}
|
235
|
-
if (stopBeforeNode && currScope.parentNode === stopBeforeNode) {
|
236
|
-
break;
|
237
|
-
}
|
238
|
-
currScope = currScope.parentScope;
|
239
|
-
}
|
240
|
-
return false;
|
241
|
-
}
|
242
|
-
function identInLocalScope(identName, state) {
|
243
|
-
return state.localScope.identifiers[identName] !== undefined;
|
244
|
-
}
|
245
|
-
function initScopeMetadata(boundaryNode, path, node) {
|
246
|
-
return {
|
247
|
-
boundaryNode: boundaryNode,
|
248
|
-
bindingPath: path,
|
249
|
-
bindingNode: node
|
250
|
-
};
|
251
|
-
}
|
252
|
-
function declareIdentInLocalScope(identName, metaData, state) {
|
253
|
-
state.localScope.identifiers[identName] = {
|
254
|
-
boundaryNode: metaData.boundaryNode,
|
255
|
-
path: metaData.bindingPath,
|
256
|
-
node: metaData.bindingNode,
|
257
|
-
state: Object.create(state)
|
258
|
-
};
|
259
|
-
}
|
260
|
-
function getLexicalBindingMetadata(identName, state) {
|
261
|
-
var currScope = state.localScope;
|
262
|
-
while (currScope) {
|
263
|
-
if (currScope.identifiers[identName] !== undefined) {
|
264
|
-
return currScope.identifiers[identName];
|
265
|
-
}
|
266
|
-
currScope = currScope.parentScope;
|
267
|
-
}
|
268
|
-
}
|
269
|
-
function getLocalBindingMetadata(identName, state) {
|
270
|
-
return state.localScope.identifiers[identName];
|
271
|
-
}
|
272
|
-
function analyzeAndTraverse(analyzer, traverser, node, path, state) {
|
273
|
-
if (node.type) {
|
274
|
-
if (analyzer(node, path, state) === false) {
|
275
|
-
return;
|
276
|
-
}
|
277
|
-
path.unshift(node);
|
278
|
-
}
|
279
|
-
getOrderedChildren(node).forEach(function(child) {
|
280
|
-
traverser(child, path, state);
|
281
|
-
});
|
282
|
-
node.type && path.shift();
|
283
|
-
}
|
284
|
-
function getOrderedChildren(node) {
|
285
|
-
var queue = [];
|
286
|
-
for (var key in node) {
|
287
|
-
if (node.hasOwnProperty(key)) {
|
288
|
-
enqueueNodeWithStartIndex(queue, node[key]);
|
289
|
-
}
|
290
|
-
}
|
291
|
-
queue.sort(function(a, b) {
|
292
|
-
return a[1] - b[1];
|
293
|
-
});
|
294
|
-
return queue.map(function(pair) {
|
295
|
-
return pair[0];
|
296
|
-
});
|
297
|
-
}
|
298
|
-
function enqueueNodeWithStartIndex(queue, node) {
|
299
|
-
if (typeof node !== 'object' || node === null) {
|
300
|
-
return;
|
301
|
-
}
|
302
|
-
if (node.range) {
|
303
|
-
queue.push([node, node.range[0]]);
|
304
|
-
} else if (Array.isArray(node)) {
|
305
|
-
for (var ii = 0; ii < node.length; ii++) {
|
306
|
-
enqueueNodeWithStartIndex(queue, node[ii]);
|
307
|
-
}
|
308
|
-
}
|
309
|
-
}
|
310
|
-
function containsChildOfType(node, type) {
|
311
|
-
return containsChildMatching(node, function(node) {
|
312
|
-
return node.type === type;
|
313
|
-
});
|
314
|
-
}
|
315
|
-
function containsChildMatching(node, matcher) {
|
316
|
-
var foundMatchingChild = false;
|
317
|
-
function nodeTypeAnalyzer(node) {
|
318
|
-
if (matcher(node) === true) {
|
319
|
-
foundMatchingChild = true;
|
320
|
-
return false;
|
321
|
-
}
|
322
|
-
}
|
323
|
-
function nodeTypeTraverser(child, path, state) {
|
324
|
-
if (!foundMatchingChild) {
|
325
|
-
foundMatchingChild = containsChildMatching(child, matcher);
|
326
|
-
}
|
327
|
-
}
|
328
|
-
analyzeAndTraverse(nodeTypeAnalyzer, nodeTypeTraverser, node, []);
|
329
|
-
return foundMatchingChild;
|
330
|
-
}
|
331
|
-
var scopeTypes = {};
|
332
|
-
scopeTypes[Syntax.ArrowFunctionExpression] = true;
|
333
|
-
scopeTypes[Syntax.FunctionExpression] = true;
|
334
|
-
scopeTypes[Syntax.FunctionDeclaration] = true;
|
335
|
-
scopeTypes[Syntax.Program] = true;
|
336
|
-
function getBoundaryNode(path) {
|
337
|
-
for (var ii = 0; ii < path.length; ++ii) {
|
338
|
-
if (scopeTypes[path[ii].type]) {
|
339
|
-
return path[ii];
|
340
|
-
}
|
341
|
-
}
|
342
|
-
throw new Error('Expected to find a node with one of the following types in path:\n' + JSON.stringify(Object.keys(scopeTypes)));
|
343
|
-
}
|
344
|
-
function getTempVar(tempVarIndex) {
|
345
|
-
return '$__' + tempVarIndex;
|
346
|
-
}
|
347
|
-
function injectTempVar(state) {
|
348
|
-
var tempVar = '$__' + (state.localScope.tempVarIndex++);
|
349
|
-
state.localScope.tempVars.push(tempVar);
|
350
|
-
return tempVar;
|
351
|
-
}
|
352
|
-
function injectTempVarDeclarations(state, index) {
|
353
|
-
if (state.localScope.tempVars.length) {
|
354
|
-
state.g.buffer = state.g.buffer.slice(0, index) + 'var ' + state.localScope.tempVars.join(', ') + ';' + state.g.buffer.slice(index);
|
355
|
-
state.localScope.tempVars = [];
|
356
|
-
}
|
357
|
-
}
|
358
|
-
exports.analyzeAndTraverse = analyzeAndTraverse;
|
359
|
-
exports.append = append;
|
360
|
-
exports.catchup = catchup;
|
361
|
-
exports.catchupNewlines = catchupNewlines;
|
362
|
-
exports.catchupWhiteOut = catchupWhiteOut;
|
363
|
-
exports.catchupWhiteSpace = catchupWhiteSpace;
|
364
|
-
exports.containsChildMatching = containsChildMatching;
|
365
|
-
exports.containsChildOfType = containsChildOfType;
|
366
|
-
exports.createState = createState;
|
367
|
-
exports.declareIdentInLocalScope = declareIdentInLocalScope;
|
368
|
-
exports.getBoundaryNode = getBoundaryNode;
|
369
|
-
exports.getDocblock = getDocblock;
|
370
|
-
exports.getLexicalBindingMetadata = getLexicalBindingMetadata;
|
371
|
-
exports.getLocalBindingMetadata = getLocalBindingMetadata;
|
372
|
-
exports.getNextSyntacticCharOffset = getNextSyntacticCharOffset;
|
373
|
-
exports.getNodeSourceText = getNodeSourceText;
|
374
|
-
exports.getOrderedChildren = getOrderedChildren;
|
375
|
-
exports.getTempVar = getTempVar;
|
376
|
-
exports.identInLocalScope = identInLocalScope;
|
377
|
-
exports.identWithinLexicalScope = identWithinLexicalScope;
|
378
|
-
exports.indentBefore = indentBefore;
|
379
|
-
exports.initScopeMetadata = initScopeMetadata;
|
380
|
-
exports.injectTempVar = injectTempVar;
|
381
|
-
exports.injectTempVarDeclarations = injectTempVarDeclarations;
|
382
|
-
exports.move = move;
|
383
|
-
exports.scopeTypes = scopeTypes;
|
384
|
-
exports.updateIndent = updateIndent;
|
385
|
-
exports.updateState = updateState;
|
386
|
-
})(require("buffer").Buffer, require("process"));
|
data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-arrow-function-visitors-test.js
DELETED
@@ -1,57 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
require("mock-modules").autoMockOff();
|
3
|
-
describe('es6ArrowFunctionsTransform', function() {
|
4
|
-
var transformFn;
|
5
|
-
var visitors;
|
6
|
-
beforeEach(function() {
|
7
|
-
require("mock-modules").dumpCache();
|
8
|
-
visitors = require("../es6-arrow-function-visitors").visitorList;
|
9
|
-
transformFn = require("../../src/jstransform").transform;
|
10
|
-
});
|
11
|
-
function transform(code) {
|
12
|
-
return transformFn(visitors, code).code;
|
13
|
-
}
|
14
|
-
function expectTransform(code, result) {
|
15
|
-
expect(transform(code)).toEqual(result);
|
16
|
-
}
|
17
|
-
it('should capture correct this value at different levels', function() {
|
18
|
-
var code = transform(['var foo = {', ' createFooGetter: function() {', ' return (x) => [x, this];', ' },', ' getParentThis: () => this', '};'].join('\n'));
|
19
|
-
eval(code);
|
20
|
-
expect(typeof foo.createFooGetter).toBe('function');
|
21
|
-
expect(typeof foo.createFooGetter()).toBe('function');
|
22
|
-
expect(typeof foo.getParentThis).toBe('function');
|
23
|
-
expect(foo.getParentThis()).toEqual(this);
|
24
|
-
expect(foo.createFooGetter()(10)).toEqual([10, foo]);
|
25
|
-
});
|
26
|
-
it('should map an array using arrow capturing this value', function() {
|
27
|
-
this.factor = 10;
|
28
|
-
var code = transform('[1, 2, 3].map(x => x * x * this.factor);');
|
29
|
-
expect(eval(code)).toEqual([10, 40, 90]);
|
30
|
-
});
|
31
|
-
it('binds if any `super` keyword is referenced', function() {
|
32
|
-
var code = transform('var fn=x=>super;');
|
33
|
-
expect(code).toEqual('var fn=function(x){return super;}.bind(this);');
|
34
|
-
});
|
35
|
-
it('should filter an array using arrow with two params', function() {
|
36
|
-
this.factor = 0;
|
37
|
-
var code = transform(['[1, 2, 3].filter((v, idx) => {', ' if (idx > 1 && this.factor > 0) {', ' return true;', ' }', ' this.factor++;', ' return false;', '});'].join('\n'));
|
38
|
-
expect(eval(code)).toEqual([3]);
|
39
|
-
});
|
40
|
-
it('should fetch this value data from nested arrow', function() {
|
41
|
-
var code = transform(['({', ' bird: 22,', ' run: function() {', ' return () => () => this.bird;', ' }', '}).run()()();'].join('\n'));
|
42
|
-
expect(eval(code)).toEqual(22);
|
43
|
-
});
|
44
|
-
it('should correctly transform arrows', function() {
|
45
|
-
expectTransform('() => this.value;', '(function() {return this.value;}.bind(this));');
|
46
|
-
expectTransform('() => (this.value);', '(function() {return this.value;}.bind(this));');
|
47
|
-
expectTransform('x => x * x;', '(function(x) {return x * x;});');
|
48
|
-
expectTransform('map((x) => x * x);', 'map(function(x) {return x * x;});');
|
49
|
-
expectTransform('makeRequest((response, error) => {'.concat(' return this.update(data => this.onData(data), response);', '});'), 'makeRequest(function(response, error) {'.concat(' return this.update(function(data) {return this.onData(data);}.bind(this), response);', '}.bind(this));'));
|
50
|
-
expectTransform('var action = (value) => this.performAction(value);', 'var action = function(value) {return this.performAction(value);}.bind(this);');
|
51
|
-
expectTransform(['(', '', '', ' x,', ' y', '', ')', '', ' =>', '', ' {', ' return x + y;', '};'].join('\n'), ['(function(', '', '', ' x,', ' y)', '', '', '', ' ', '', ' {', ' return x + y;', '});'].join('\n'));
|
52
|
-
expectTransform(['x', '', ' =>', ' x;'].join('\n'), ['(function(x)', '', ' ', ' {return x;});'].join('\n'));
|
53
|
-
expectTransform(['(', '', ' x', '', ')', '', ' =>', ' x;'].join('\n'), ['(function(', '', ' x)', '', '', '', ' ', ' {return x;});'].join('\n'));
|
54
|
-
expectTransform(['(x) => (', ' x', ');'].join('\n'), ['(function(x) ', ' {return x;}', ');'].join('\n'));
|
55
|
-
expectTransform('(/*string*/foo, /*bool*/bar) => foo;', '(function(/*string*/foo, /*bool*/bar) {return foo;});');
|
56
|
-
});
|
57
|
-
});
|
data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-call-spread-visitors-test.js
DELETED
@@ -1,46 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
require("mock-modules").autoMockOff();
|
3
|
-
describe('es6-call-spread-visitors', function() {
|
4
|
-
var transformFn;
|
5
|
-
var visitors;
|
6
|
-
beforeEach(function() {
|
7
|
-
require("mock-modules").dumpCache();
|
8
|
-
transformFn = require("../../src/jstransform").transform;
|
9
|
-
visitors = require("../es6-call-spread-visitors").visitorList;
|
10
|
-
});
|
11
|
-
function transform(code, options) {
|
12
|
-
return transformFn(visitors, code, options).code;
|
13
|
-
}
|
14
|
-
it('should spread given data with context', function() {
|
15
|
-
expect(transform('Math.max(1,\t[2], 3, ...[4, 5, 6])')).toEqual('var $__0;($__0 = Math).max.apply($__0, [1,\t[2], 3].concat([4, 5, 6]))');
|
16
|
-
});
|
17
|
-
it('should avoid unnecessary concat call', function() {
|
18
|
-
expect(transform('window.Math.max(...list)')).toEqual('var $__0;($__0 = window.Math).max.apply($__0, list)');
|
19
|
-
});
|
20
|
-
it('should default to null context', function() {
|
21
|
-
expect(transform('max(1, 2, ...list)')).toEqual('max.apply(null, [1, 2].concat(list))');
|
22
|
-
});
|
23
|
-
it('should handle computed method names', function() {
|
24
|
-
expect(transform('Math["m" + (0 ? "in" : "ax")](1, 2, ...list)')).toEqual('var $__0;($__0 = Math)["m" + (0 ? "in" : "ax")].apply($__0, [1, 2].concat(list))');
|
25
|
-
});
|
26
|
-
it('should handle immediately invoked function expressions', function() {
|
27
|
-
expect(transform('(function(a, b, c) { return a+b+c; })(1, 2, ...more)')).toEqual('(function(a, b, c) { return a+b+c; }).apply(null, [1, 2].concat(more))');
|
28
|
-
});
|
29
|
-
it('should spread while creating new instances', function() {
|
30
|
-
expect(transform('new Set(1, 2, ...list)')).toEqual('new (Function.prototype.bind.apply(Set, [null, 1, 2].concat(list)))');
|
31
|
-
});
|
32
|
-
it('should create temporary variables when necessary in program scope', function() {
|
33
|
-
expect(transform('foo().bar(arg1, arg2, ...more)')).toEqual('var $__0;($__0 = foo()).bar.apply($__0, [arg1, arg2].concat(more))');
|
34
|
-
});
|
35
|
-
it('should create temporary variables when necessary in function scope', function() {
|
36
|
-
expect(transform('function fn(){ return foo().bar(arg1, arg2, ...more); }')).toEqual('function fn(){var $__0; return ($__0 = foo()).bar.apply($__0, [arg1, arg2].concat(more)); }');
|
37
|
-
});
|
38
|
-
it('should not evaluate context more than once', function() {
|
39
|
-
var code = transform(['var obj = {', ' calls: 0,', ' get context() {', ' this.calls++;', ' return {', ' add: function(a, b) { return a + b; }', ' };', ' }', '};', 'var nums = [1, 2];', 'obj.context.add(...nums);', 'obj.calls === 1;'].join('\n'));
|
40
|
-
expect(eval(code)).toEqual(true);
|
41
|
-
});
|
42
|
-
it('should transform nested spread expressions', function() {
|
43
|
-
var code = transform(['function getBase() {', ' return {', ' getParams: function(a, b) {', ' return [a, b];', ' }', ' };', '}', '[].concat(...getBase().getParams(...[1, 2, 3])).join(" ");'].join('\n'));
|
44
|
-
expect(eval(code)).toEqual("1 2");
|
45
|
-
});
|
46
|
-
});
|