sequenceserver 2.0.0 → 2.1.0
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- checksums.yaml +4 -4
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +36 -30
- data/lib/sequenceserver/config.rb +49 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/routes.rb +69 -7
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +2 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +1 -0
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +315 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +99 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +41 -0
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
- data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/10.js +1 -1
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var path = require.modules.path();
|
104
|
+
var res = null;
|
105
|
+
try {
|
106
|
+
res = require.resolve(from + '/package.json', '/');
|
107
|
+
} catch (err) {
|
108
|
+
res = require.resolve(from, '/');
|
109
|
+
}
|
110
|
+
var basedir = path.dirname(res);
|
111
|
+
var keys = (Object.keys || function(obj) {
|
112
|
+
var res = [];
|
113
|
+
for (var key in obj)
|
114
|
+
res.push(key);
|
115
|
+
return res;
|
116
|
+
})(require.modules);
|
117
|
+
for (var i = 0; i < keys.length; i++) {
|
118
|
+
var key = keys[i];
|
119
|
+
if (key.slice(0, basedir.length + 1) === basedir + '/') {
|
120
|
+
var f = key.slice(basedir.length);
|
121
|
+
require.modules[to + f] = require.modules[basedir + f];
|
122
|
+
} else if (key === basedir) {
|
123
|
+
require.modules[to] = require.modules[basedir];
|
124
|
+
}
|
125
|
+
}
|
126
|
+
};
|
127
|
+
require.define = function(filename, fn) {
|
128
|
+
var dirname = require._core[filename] ? '' : require.modules.path().dirname(filename);
|
129
|
+
;
|
130
|
+
var require_ = function(file) {
|
131
|
+
return require(file, dirname);
|
132
|
+
};
|
133
|
+
require_.resolve = function(name) {
|
134
|
+
return require.resolve(name, dirname);
|
135
|
+
};
|
136
|
+
require_.modules = require.modules;
|
137
|
+
require_.define = require.define;
|
138
|
+
var module_ = {exports: {}};
|
139
|
+
require.modules[filename] = function() {
|
140
|
+
require.modules[filename]._cached = module_.exports;
|
141
|
+
fn.call(module_.exports, require_, module_, module_.exports, dirname, filename);
|
142
|
+
require.modules[filename]._cached = module_.exports;
|
143
|
+
return module_.exports;
|
144
|
+
};
|
145
|
+
};
|
146
|
+
if (typeof process === 'undefined')
|
147
|
+
process = {};
|
148
|
+
if (!process.nextTick)
|
149
|
+
process.nextTick = (function() {
|
150
|
+
var queue = [];
|
151
|
+
var canPost = typeof window !== 'undefined' && window.postMessage && window.addEventListener;
|
152
|
+
;
|
153
|
+
if (canPost) {
|
154
|
+
window.addEventListener('message', function(ev) {
|
155
|
+
if (ev.source === window && ev.data === 'browserify-tick') {
|
156
|
+
ev.stopPropagation();
|
157
|
+
if (queue.length > 0) {
|
158
|
+
var fn = queue.shift();
|
159
|
+
fn();
|
160
|
+
}
|
161
|
+
}
|
162
|
+
}, true);
|
163
|
+
}
|
164
|
+
return function(fn) {
|
165
|
+
if (canPost) {
|
166
|
+
queue.push(fn);
|
167
|
+
window.postMessage('browserify-tick', '*');
|
168
|
+
} else
|
169
|
+
setTimeout(fn, 0);
|
170
|
+
};
|
171
|
+
})();
|
172
|
+
if (!process.title)
|
173
|
+
process.title = 'browser';
|
174
|
+
if (!process.binding)
|
175
|
+
process.binding = function(name) {
|
176
|
+
if (name === 'evals')
|
177
|
+
return require('vm');
|
178
|
+
else
|
179
|
+
throw new Error('No such module');
|
180
|
+
};
|
181
|
+
if (!process.cwd)
|
182
|
+
process.cwd = function() {
|
183
|
+
return '.';
|
184
|
+
};
|
185
|
+
require.define("path", function(require, module, exports, __dirname, __filename) {
|
186
|
+
function filter(xs, fn) {
|
187
|
+
var res = [];
|
188
|
+
for (var i = 0; i < xs.length; i++) {
|
189
|
+
if (fn(xs[i], i, xs))
|
190
|
+
res.push(xs[i]);
|
191
|
+
}
|
192
|
+
return res;
|
193
|
+
}
|
194
|
+
function normalizeArray(parts, allowAboveRoot) {
|
195
|
+
var up = 0;
|
196
|
+
for (var i = parts.length; i >= 0; i--) {
|
197
|
+
var last = parts[i];
|
198
|
+
if (last == '.') {
|
199
|
+
parts.splice(i, 1);
|
200
|
+
} else if (last === '..') {
|
201
|
+
parts.splice(i, 1);
|
202
|
+
up++;
|
203
|
+
} else if (up) {
|
204
|
+
parts.splice(i, 1);
|
205
|
+
up--;
|
206
|
+
}
|
207
|
+
}
|
208
|
+
if (allowAboveRoot) {
|
209
|
+
for (; up--; up) {
|
210
|
+
parts.unshift('..');
|
211
|
+
}
|
212
|
+
}
|
213
|
+
return parts;
|
214
|
+
}
|
215
|
+
var splitPathRe = /^(.+\/(?!$)|\/)?((?:.+?)?(\.[^.]*)?)$/;
|
216
|
+
exports.resolve = function() {
|
217
|
+
var resolvedPath = '',
|
218
|
+
resolvedAbsolute = false;
|
219
|
+
for (var i = arguments.length; i >= -1 && !resolvedAbsolute; i--) {
|
220
|
+
var path = (i >= 0) ? arguments[i] : process.cwd();
|
221
|
+
if (typeof path !== 'string' || !path) {
|
222
|
+
continue;
|
223
|
+
}
|
224
|
+
resolvedPath = path + '/' + resolvedPath;
|
225
|
+
resolvedAbsolute = path.charAt(0) === '/';
|
226
|
+
}
|
227
|
+
resolvedPath = normalizeArray(filter(resolvedPath.split('/'), function(p) {
|
228
|
+
return !!p;
|
229
|
+
}), !resolvedAbsolute).join('/');
|
230
|
+
return ((resolvedAbsolute ? '/' : '') + resolvedPath) || '.';
|
231
|
+
};
|
232
|
+
exports.normalize = function(path) {
|
233
|
+
var isAbsolute = path.charAt(0) === '/',
|
234
|
+
trailingSlash = path.slice(-1) === '/';
|
235
|
+
path = normalizeArray(filter(path.split('/'), function(p) {
|
236
|
+
return !!p;
|
237
|
+
}), !isAbsolute).join('/');
|
238
|
+
if (!path && !isAbsolute) {
|
239
|
+
path = '.';
|
240
|
+
}
|
241
|
+
if (path && trailingSlash) {
|
242
|
+
path += '/';
|
243
|
+
}
|
244
|
+
return (isAbsolute ? '/' : '') + path;
|
245
|
+
};
|
246
|
+
exports.join = function() {
|
247
|
+
var paths = Array.prototype.slice.call(arguments, 0);
|
248
|
+
return exports.normalize(filter(paths, function(p, index) {
|
249
|
+
return p && typeof p === 'string';
|
250
|
+
}).join('/'));
|
251
|
+
};
|
252
|
+
exports.dirname = function(path) {
|
253
|
+
var dir = splitPathRe.exec(path)[1] || '';
|
254
|
+
var isWindows = false;
|
255
|
+
if (!dir) {
|
256
|
+
return '.';
|
257
|
+
} else if (dir.length === 1 || (isWindows && dir.length <= 3 && dir.charAt(1) === ':')) {
|
258
|
+
return dir;
|
259
|
+
} else {
|
260
|
+
return dir.substring(0, dir.length - 1);
|
261
|
+
}
|
262
|
+
};
|
263
|
+
exports.basename = function(path, ext) {
|
264
|
+
var f = splitPathRe.exec(path)[2] || '';
|
265
|
+
if (ext && f.substr(-1 * ext.length) === ext) {
|
266
|
+
f = f.substr(0, f.length - ext.length);
|
267
|
+
}
|
268
|
+
return f;
|
269
|
+
};
|
270
|
+
exports.extname = function(path) {
|
271
|
+
return splitPathRe.exec(path)[3] || '';
|
272
|
+
};
|
273
|
+
});
|
274
|
+
require.define("vm", function(require, module, exports, __dirname, __filename) {
|
275
|
+
var Object_keys = function(obj) {
|
276
|
+
if (Object.keys)
|
277
|
+
return Object.keys(obj);
|
278
|
+
else {
|
279
|
+
var res = [];
|
280
|
+
for (var key in obj)
|
281
|
+
res.push(key);
|
282
|
+
return res;
|
283
|
+
}
|
284
|
+
};
|
285
|
+
var forEach = function(xs, fn) {
|
286
|
+
if (xs.forEach)
|
287
|
+
return xs.forEach(fn);
|
288
|
+
else
|
289
|
+
for (var i = 0; i < xs.length; i++) {
|
290
|
+
fn(xs[i], i, xs);
|
291
|
+
}
|
292
|
+
};
|
293
|
+
var Script = exports.Script = function NodeScript(code) {
|
294
|
+
if (!(this instanceof Script))
|
295
|
+
return new Script(code);
|
296
|
+
this.code = code;
|
297
|
+
};
|
298
|
+
var iframe = document.createElement('iframe');
|
299
|
+
if (!iframe.style)
|
300
|
+
iframe.style = {};
|
301
|
+
iframe.style.display = 'none';
|
302
|
+
var iframeCapable = true;
|
303
|
+
if (navigator.appName === 'Microsoft Internet Explorer') {
|
304
|
+
var m = navigator.appVersion.match(/\bMSIE (\d+\.\d+);/);
|
305
|
+
if (m && parseFloat(m[1]) <= 9.0) {
|
306
|
+
iframeCapable = false;
|
307
|
+
}
|
308
|
+
}
|
309
|
+
Script.prototype.runInNewContext = function(context) {
|
310
|
+
if (!context)
|
311
|
+
context = {};
|
312
|
+
if (!iframeCapable) {
|
313
|
+
var keys = Object_keys(context);
|
314
|
+
var args = [];
|
315
|
+
for (var i = 0; i < keys.length; i++) {
|
316
|
+
args.push(context[keys[i]]);
|
317
|
+
}
|
318
|
+
var fn = new Function(keys, 'return ' + this.code);
|
319
|
+
return fn.apply(null, args);
|
320
|
+
}
|
321
|
+
document.body.appendChild(iframe);
|
322
|
+
var win = iframe.contentWindow || (window.frames && window.frames[window.frames.length - 1]) || window[window.length - 1];
|
323
|
+
;
|
324
|
+
forEach(Object_keys(context), function(key) {
|
325
|
+
win[key] = context[key];
|
326
|
+
iframe[key] = context[key];
|
327
|
+
});
|
328
|
+
if (win.eval) {
|
329
|
+
var res = win.eval(this.code);
|
330
|
+
} else {
|
331
|
+
iframe.setAttribute('src', 'javascript:__browserifyVmResult=(' + this.code + ')');
|
332
|
+
if ('__browserifyVmResult' in win) {
|
333
|
+
var res = win.__browserifyVmResult;
|
334
|
+
} else {
|
335
|
+
iframeCapable = false;
|
336
|
+
res = this.runInThisContext(context);
|
337
|
+
}
|
338
|
+
}
|
339
|
+
forEach(Object_keys(win), function(key) {
|
340
|
+
context[key] = win[key];
|
341
|
+
});
|
342
|
+
document.body.removeChild(iframe);
|
343
|
+
return res;
|
344
|
+
};
|
345
|
+
Script.prototype.runInThisContext = function() {
|
346
|
+
return eval(this.code);
|
347
|
+
};
|
348
|
+
Script.prototype.runInContext = function(context) {
|
349
|
+
return this.runInNewContext(context);
|
350
|
+
};
|
351
|
+
forEach(Object_keys(Script.prototype), function(name) {
|
352
|
+
exports[name] = Script[name] = function(code) {
|
353
|
+
var s = Script(code);
|
354
|
+
return s[name].apply(s, [].slice.call(arguments, 1));
|
355
|
+
};
|
356
|
+
});
|
357
|
+
exports.createScript = function(code) {
|
358
|
+
return exports.Script(code);
|
359
|
+
};
|
360
|
+
exports.createContext = Script.createContext = function(context) {
|
361
|
+
var copy = {};
|
362
|
+
forEach(Object_keys(context), function(key) {
|
363
|
+
copy[key] = context[key];
|
364
|
+
});
|
365
|
+
return copy;
|
366
|
+
};
|
367
|
+
});
|
368
|
+
require.define("/entry.js", function(require, module, exports, __dirname, __filename) {
|
369
|
+
var vm = require('vm');
|
370
|
+
$(function() {
|
371
|
+
var res = vm.runInNewContext('a + 5', {a: 100});
|
372
|
+
$('#res').text(res);
|
373
|
+
});
|
374
|
+
});
|
375
|
+
require('/entry');
|
376
|
+
})(require('process'));
|
@@ -0,0 +1,139 @@
|
|
1
|
+
/* */
|
2
|
+
var indexOf = require('indexof');
|
3
|
+
|
4
|
+
var Object_keys = function (obj) {
|
5
|
+
if (Object.keys) return Object.keys(obj)
|
6
|
+
else {
|
7
|
+
var res = [];
|
8
|
+
for (var key in obj) res.push(key)
|
9
|
+
return res;
|
10
|
+
}
|
11
|
+
};
|
12
|
+
|
13
|
+
var forEach = function (xs, fn) {
|
14
|
+
if (xs.forEach) return xs.forEach(fn)
|
15
|
+
else for (var i = 0; i < xs.length; i++) {
|
16
|
+
fn(xs[i], i, xs);
|
17
|
+
}
|
18
|
+
};
|
19
|
+
|
20
|
+
var defineProp = (function() {
|
21
|
+
try {
|
22
|
+
Object.defineProperty({}, '_', {});
|
23
|
+
return function(obj, name, value) {
|
24
|
+
Object.defineProperty(obj, name, {
|
25
|
+
writable: true,
|
26
|
+
enumerable: false,
|
27
|
+
configurable: true,
|
28
|
+
value: value
|
29
|
+
})
|
30
|
+
};
|
31
|
+
} catch(e) {
|
32
|
+
return function(obj, name, value) {
|
33
|
+
obj[name] = value;
|
34
|
+
};
|
35
|
+
}
|
36
|
+
}());
|
37
|
+
|
38
|
+
var globals = ['Array', 'Boolean', 'Date', 'Error', 'EvalError', 'Function',
|
39
|
+
'Infinity', 'JSON', 'Math', 'NaN', 'Number', 'Object', 'RangeError',
|
40
|
+
'ReferenceError', 'RegExp', 'String', 'SyntaxError', 'TypeError', 'URIError',
|
41
|
+
'decodeURI', 'decodeURIComponent', 'encodeURI', 'encodeURIComponent', 'escape',
|
42
|
+
'eval', 'isFinite', 'isNaN', 'parseFloat', 'parseInt', 'undefined', 'unescape'];
|
43
|
+
|
44
|
+
function Context() {}
|
45
|
+
Context.prototype = {};
|
46
|
+
|
47
|
+
var Script = exports.Script = function NodeScript (code) {
|
48
|
+
if (!(this instanceof Script)) return new Script(code);
|
49
|
+
this.code = code;
|
50
|
+
};
|
51
|
+
|
52
|
+
Script.prototype.runInContext = function (context) {
|
53
|
+
if (!(context instanceof Context)) {
|
54
|
+
throw new TypeError("needs a 'context' argument.");
|
55
|
+
}
|
56
|
+
|
57
|
+
var iframe = document.createElement('iframe');
|
58
|
+
if (!iframe.style) iframe.style = {};
|
59
|
+
iframe.style.display = 'none';
|
60
|
+
|
61
|
+
document.body.appendChild(iframe);
|
62
|
+
|
63
|
+
var win = iframe.contentWindow;
|
64
|
+
var wEval = win.eval, wExecScript = win.execScript;
|
65
|
+
|
66
|
+
if (!wEval && wExecScript) {
|
67
|
+
// win.eval() magically appears when this is called in IE:
|
68
|
+
wExecScript.call(win, 'null');
|
69
|
+
wEval = win.eval;
|
70
|
+
}
|
71
|
+
|
72
|
+
forEach(Object_keys(context), function (key) {
|
73
|
+
win[key] = context[key];
|
74
|
+
});
|
75
|
+
forEach(globals, function (key) {
|
76
|
+
if (context[key]) {
|
77
|
+
win[key] = context[key];
|
78
|
+
}
|
79
|
+
});
|
80
|
+
|
81
|
+
var winKeys = Object_keys(win);
|
82
|
+
|
83
|
+
var res = wEval.call(win, this.code);
|
84
|
+
|
85
|
+
forEach(Object_keys(win), function (key) {
|
86
|
+
// Avoid copying circular objects like `top` and `window` by only
|
87
|
+
// updating existing context properties or new properties in the `win`
|
88
|
+
// that was only introduced after the eval.
|
89
|
+
if (key in context || indexOf(winKeys, key) === -1) {
|
90
|
+
context[key] = win[key];
|
91
|
+
}
|
92
|
+
});
|
93
|
+
|
94
|
+
forEach(globals, function (key) {
|
95
|
+
if (!(key in context)) {
|
96
|
+
defineProp(context, key, win[key]);
|
97
|
+
}
|
98
|
+
});
|
99
|
+
|
100
|
+
document.body.removeChild(iframe);
|
101
|
+
|
102
|
+
return res;
|
103
|
+
};
|
104
|
+
|
105
|
+
Script.prototype.runInThisContext = function () {
|
106
|
+
return eval(this.code); // maybe...
|
107
|
+
};
|
108
|
+
|
109
|
+
Script.prototype.runInNewContext = function (context) {
|
110
|
+
var ctx = Script.createContext(context);
|
111
|
+
var res = this.runInContext(ctx);
|
112
|
+
|
113
|
+
forEach(Object_keys(ctx), function (key) {
|
114
|
+
context[key] = ctx[key];
|
115
|
+
});
|
116
|
+
|
117
|
+
return res;
|
118
|
+
};
|
119
|
+
|
120
|
+
forEach(Object_keys(Script.prototype), function (name) {
|
121
|
+
exports[name] = Script[name] = function (code) {
|
122
|
+
var s = Script(code);
|
123
|
+
return s[name].apply(s, [].slice.call(arguments, 1));
|
124
|
+
};
|
125
|
+
});
|
126
|
+
|
127
|
+
exports.createScript = function (code) {
|
128
|
+
return exports.Script(code);
|
129
|
+
};
|
130
|
+
|
131
|
+
exports.createContext = Script.createContext = function (context) {
|
132
|
+
var copy = new Context();
|
133
|
+
if(typeof context === 'object') {
|
134
|
+
forEach(Object_keys(context), function (key) {
|
135
|
+
copy[key] = context[key];
|
136
|
+
});
|
137
|
+
}
|
138
|
+
return copy;
|
139
|
+
};
|
@@ -0,0 +1,46 @@
|
|
1
|
+
{
|
2
|
+
"name": "vm-browserify",
|
3
|
+
"version": "0.0.4",
|
4
|
+
"description": "vm module for the browser",
|
5
|
+
"main": "index.js",
|
6
|
+
"repository": {
|
7
|
+
"type": "git",
|
8
|
+
"url": "http://github.com/substack/vm-browserify.git"
|
9
|
+
},
|
10
|
+
"keywords": [
|
11
|
+
"vm",
|
12
|
+
"browser",
|
13
|
+
"eval"
|
14
|
+
],
|
15
|
+
"dependencies": {
|
16
|
+
"indexof": "0.0.1"
|
17
|
+
},
|
18
|
+
"devDependencies": {
|
19
|
+
"tape": "~2.3.2"
|
20
|
+
},
|
21
|
+
"author": {
|
22
|
+
"name": "James Halliday",
|
23
|
+
"email": "mail@substack.net",
|
24
|
+
"url": "http://substack.net"
|
25
|
+
},
|
26
|
+
"scripts": {
|
27
|
+
"test": "tap test/*.js"
|
28
|
+
},
|
29
|
+
"license": "MIT",
|
30
|
+
"testling": {
|
31
|
+
"files": "test/*.js",
|
32
|
+
"browsers": [
|
33
|
+
"ie/6..latest",
|
34
|
+
"firefox/16..latest",
|
35
|
+
"firefox/nightly",
|
36
|
+
"chrome/22..latest",
|
37
|
+
"chrome/canary",
|
38
|
+
"opera/12..latest",
|
39
|
+
"opera/next",
|
40
|
+
"safari/5.1..latest",
|
41
|
+
"ipad/6.0..latest",
|
42
|
+
"iphone/6.0..latest",
|
43
|
+
"android-browser/4.2..latest"
|
44
|
+
]
|
45
|
+
}
|
46
|
+
}
|