sequenceserver 2.0.0 → 2.1.0

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Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
  217. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
  218. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
  219. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
  223. data/public/vendor/npm/scheduler@0.21.0.js +1 -0
  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
  238. data/public/vendor/npm/util@0.10.3.js +1 -1
  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
  252. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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  659. /data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-buffer@0.1.1}/index.js +0 -0
  660. /data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/index.js +0 -0
  661. /data/public/vendor/npm/{readable-stream@1.1.13 → assert@1.5.0}/LICENSE +0 -0
  662. /data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/LICENSE +0 -0
  663. /data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/README.md +0 -0
  664. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/LICENSE +0 -0
  665. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/index.js +0 -0
  666. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/README.md +0 -0
  667. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/float.patch +0 -0
@@ -0,0 +1,96 @@
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+ {
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+ "name": "buffer",
3
+ "description": "Node.js Buffer API, for the browser",
4
+ "version": "5.7.1",
5
+ "author": {
6
+ "name": "Feross Aboukhadijeh",
7
+ "email": "feross@feross.org",
8
+ "url": "https://feross.org"
9
+ },
10
+ "bugs": {
11
+ "url": "https://github.com/feross/buffer/issues"
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+ },
13
+ "contributors": [
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+ "Romain Beauxis <toots@rastageeks.org>",
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+ "James Halliday <mail@substack.net>"
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+ ],
17
+ "dependencies": {
18
+ "base64-js": "^1.3.1",
19
+ "ieee754": "^1.1.13"
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+ },
21
+ "devDependencies": {
22
+ "airtap": "^3.0.0",
23
+ "benchmark": "^2.1.4",
24
+ "browserify": "^17.0.0",
25
+ "concat-stream": "^2.0.0",
26
+ "hyperquest": "^2.1.3",
27
+ "is-buffer": "^2.0.4",
28
+ "is-nan": "^1.3.0",
29
+ "split": "^1.0.1",
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+ "standard": "*",
31
+ "tape": "^5.0.1",
32
+ "through2": "^4.0.2",
33
+ "uglify-js": "^3.11.3"
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+ },
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+ "homepage": "https://github.com/feross/buffer",
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+ "jspm": {
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+ "map": {
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+ "./index.js": {
39
+ "node": "@node/buffer"
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+ }
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+ }
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+ },
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+ "keywords": [
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+ "arraybuffer",
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+ "browser",
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+ "browserify",
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+ "buffer",
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+ "compatible",
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+ "dataview",
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+ "uint8array"
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+ ],
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+ "license": "MIT",
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+ "main": "index.js",
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+ "types": "index.d.ts",
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+ "repository": {
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+ "type": "git",
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+ "url": "git://github.com/feross/buffer.git"
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+ },
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+ "scripts": {
60
+ "perf": "browserify --debug perf/bracket-notation.js > perf/bundle.js && open perf/index.html",
61
+ "perf-node": "node perf/bracket-notation.js && node perf/concat.js && node perf/copy-big.js && node perf/copy.js && node perf/new-big.js && node perf/new.js && node perf/readDoubleBE.js && node perf/readFloatBE.js && node perf/readUInt32LE.js && node perf/slice.js && node perf/writeFloatBE.js",
62
+ "size": "browserify -r ./ | uglifyjs -c -m | gzip | wc -c",
63
+ "test": "standard && node ./bin/test.js",
64
+ "test-browser-es5": "airtap -- test/*.js",
65
+ "test-browser-es5-local": "airtap --local -- test/*.js",
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+ "test-browser-es6": "airtap -- test/*.js test/node/*.js",
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+ "test-browser-es6-local": "airtap --local -- test/*.js test/node/*.js",
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+ "test-node": "tape test/*.js test/node/*.js",
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+ "update-authors": "./bin/update-authors.sh"
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+ },
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+ "standard": {
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+ "ignore": [
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+ "test/node/**/*.js",
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+ "test/common.js",
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+ "test/_polyfill.js",
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+ "perf/**/*.js"
77
+ ],
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+ "globals": [
79
+ "SharedArrayBuffer"
80
+ ]
81
+ },
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+ "funding": [
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+ {
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+ "type": "github",
85
+ "url": "https://github.com/sponsors/feross"
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+ },
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+ {
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+ "type": "patreon",
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+ "url": "https://www.patreon.com/feross"
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+ },
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+ {
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+ "type": "consulting",
93
+ "url": "https://feross.org/support"
94
+ }
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+ ]
96
+ }
@@ -0,0 +1 @@
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+ module.exports = require("npm:buffer@5.7.1/index.js");
@@ -0,0 +1,19 @@
1
+ Copyright Node.js contributors. All rights reserved.
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+
3
+ Permission is hereby granted, free of charge, to any person obtaining a copy
4
+ of this software and associated documentation files (the "Software"), to
5
+ deal in the Software without restriction, including without limitation the
6
+ rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
7
+ sell copies of the Software, and to permit persons to whom the Software is
8
+ furnished to do so, subject to the following conditions:
9
+
10
+ The above copyright notice and this permission notice shall be included in
11
+ all copies or substantial portions of the Software.
12
+
13
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
14
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
15
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
16
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
17
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
18
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
19
+ IN THE SOFTWARE.
@@ -0,0 +1,64 @@
1
+ /* */
2
+ function isArray(arg) {
3
+ if (Array.isArray) {
4
+ return Array.isArray(arg);
5
+ }
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+ return objectToString(arg) === '[object Array]';
7
+ }
8
+ exports.isArray = isArray;
9
+ function isBoolean(arg) {
10
+ return typeof arg === 'boolean';
11
+ }
12
+ exports.isBoolean = isBoolean;
13
+ function isNull(arg) {
14
+ return arg === null;
15
+ }
16
+ exports.isNull = isNull;
17
+ function isNullOrUndefined(arg) {
18
+ return arg == null;
19
+ }
20
+ exports.isNullOrUndefined = isNullOrUndefined;
21
+ function isNumber(arg) {
22
+ return typeof arg === 'number';
23
+ }
24
+ exports.isNumber = isNumber;
25
+ function isString(arg) {
26
+ return typeof arg === 'string';
27
+ }
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+ exports.isString = isString;
29
+ function isSymbol(arg) {
30
+ return typeof arg === 'symbol';
31
+ }
32
+ exports.isSymbol = isSymbol;
33
+ function isUndefined(arg) {
34
+ return arg === void 0;
35
+ }
36
+ exports.isUndefined = isUndefined;
37
+ function isRegExp(re) {
38
+ return objectToString(re) === '[object RegExp]';
39
+ }
40
+ exports.isRegExp = isRegExp;
41
+ function isObject(arg) {
42
+ return typeof arg === 'object' && arg !== null;
43
+ }
44
+ exports.isObject = isObject;
45
+ function isDate(d) {
46
+ return objectToString(d) === '[object Date]';
47
+ }
48
+ exports.isDate = isDate;
49
+ function isError(e) {
50
+ return (objectToString(e) === '[object Error]' || e instanceof Error);
51
+ }
52
+ exports.isError = isError;
53
+ function isFunction(arg) {
54
+ return typeof arg === 'function';
55
+ }
56
+ exports.isFunction = isFunction;
57
+ function isPrimitive(arg) {
58
+ return arg === null || typeof arg === 'boolean' || typeof arg === 'number' || typeof arg === 'string' || typeof arg === 'symbol' || typeof arg === 'undefined';
59
+ }
60
+ exports.isPrimitive = isPrimitive;
61
+ exports.isBuffer = require('buffer').Buffer.isBuffer;
62
+ function objectToString(o) {
63
+ return Object.prototype.toString.call(o);
64
+ }
@@ -1,8 +1,11 @@
1
1
  {
2
2
  "name": "core-util-is",
3
- "version": "1.0.1",
3
+ "version": "1.0.3",
4
4
  "description": "The `util.is*` functions introduced in Node v0.12.",
5
5
  "main": "lib/util.js",
6
+ "files": [
7
+ "lib"
8
+ ],
6
9
  "repository": {
7
10
  "type": "git",
8
11
  "url": "git://github.com/isaacs/core-util-is"
@@ -22,5 +25,14 @@
22
25
  "license": "MIT",
23
26
  "bugs": {
24
27
  "url": "https://github.com/isaacs/core-util-is/issues"
28
+ },
29
+ "scripts": {
30
+ "test": "tap test.js",
31
+ "preversion": "npm test",
32
+ "postversion": "npm publish",
33
+ "prepublishOnly": "git push origin --follow-tags"
34
+ },
35
+ "devDependencies": {
36
+ "tap": "^15.0.9"
25
37
  }
26
38
  }
@@ -0,0 +1 @@
1
+ module.exports = require("npm:core-util-is@1.0.3/lib/util.js");
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var events = require("../events");
2
+ var assert = require('assert');
3
+ var events = require('../events');
4
4
  var e = new events.EventEmitter();
5
5
  var events_new_listener_emited = [];
6
6
  var listeners_new_listener_emited = [];
@@ -1,7 +1,7 @@
1
1
  /* */
2
2
  (function(process) {
3
- var assert = require("assert");
4
- var events = require("../events");
3
+ var assert = require('assert');
4
+ var events = require('../events');
5
5
  var e = new events.EventEmitter();
6
6
  for (var i = 0; i < 10; i++) {
7
7
  e.on('default', function() {});
@@ -48,4 +48,4 @@
48
48
  e.on('uno', function() {});
49
49
  assert.ok(e._events['uno'].hasOwnProperty('warned'));
50
50
  assert.strictEqual(e, e.setMaxListeners(1));
51
- })(require("process"));
51
+ })(require('process'));
@@ -1,5 +1,5 @@
1
1
  /* */
2
- var assert = require("assert");
2
+ var assert = require('assert');
3
3
  var mustCallChecks = [];
4
4
  function runCallChecks() {
5
5
  var failed_count = 0;
@@ -1,20 +1,20 @@
1
1
  /* */
2
- require("./legacy-compat");
2
+ require('./legacy-compat');
3
3
  var orig_require = require;
4
4
  var require = function(file) {
5
5
  test(file, function() {
6
6
  orig_require(file);
7
7
  });
8
8
  };
9
- require("./add-listeners");
10
- require("./check-listener-leaks");
11
- require("./listeners-side-effects");
12
- require("./listeners");
13
- require("./max-listeners");
14
- require("./modify-in-emit");
15
- require("./num-args");
16
- require("./once");
17
- require("./set-max-listeners-side-effects");
18
- require("./subclass");
19
- require("./remove-all-listeners");
20
- require("./remove-listeners");
9
+ require('./add-listeners');
10
+ require('./check-listener-leaks');
11
+ require('./listeners-side-effects');
12
+ require('./listeners');
13
+ require('./max-listeners');
14
+ require('./modify-in-emit');
15
+ require('./num-args');
16
+ require('./once');
17
+ require('./set-max-listeners-side-effects');
18
+ require('./subclass');
19
+ require('./remove-all-listeners');
20
+ require('./remove-listeners');
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var EventEmitter = require("../events").EventEmitter;
2
+ var assert = require('assert');
3
+ var EventEmitter = require('../events').EventEmitter;
4
4
  var e = new EventEmitter;
5
5
  var fl;
6
6
  fl = e.listeners('foo');
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var events = require("../events");
2
+ var assert = require('assert');
3
+ var events = require('../events');
4
4
  function listener() {}
5
5
  function listener2() {}
6
6
  var e1 = new events.EventEmitter();
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var events = require("../events");
2
+ var assert = require('assert');
3
+ var events = require('../events');
4
4
  var gotEvent = false;
5
5
  var e = new events.EventEmitter();
6
6
  e.on('maxListeners', function() {
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var events = require("../events");
2
+ var assert = require('assert');
3
+ var events = require('../events');
4
4
  var callbacks_called = [];
5
5
  var e = new events.EventEmitter();
6
6
  function callback1() {
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var events = require("../events");
2
+ var assert = require('assert');
3
+ var events = require('../events');
4
4
  var e = new events.EventEmitter(),
5
5
  num_args_emited = [];
6
6
  e.on('numArgs', function() {
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var events = require("../events");
2
+ var assert = require('assert');
3
+ var events = require('../events');
4
4
  var e = new events.EventEmitter();
5
5
  var times_hello_emited = 0;
6
6
  e.once('hello', function(a, b) {
@@ -1,7 +1,7 @@
1
1
  /* */
2
- var common = require("./common");
3
- var assert = require("assert");
4
- var events = require("../events");
2
+ var common = require('./common');
3
+ var assert = require('assert');
4
+ var events = require('../events');
5
5
  var after_checks = [];
6
6
  after(function() {
7
7
  for (var i = 0; i < after_checks.length; ++i) {
@@ -1,7 +1,7 @@
1
1
  /* */
2
- var common = require("./common");
3
- var assert = require("assert");
4
- var events = require("../events");
2
+ var common = require('./common');
3
+ var assert = require('assert');
4
+ var events = require('../events');
5
5
  var count = 0;
6
6
  function listener1() {
7
7
  console.log('listener1');
@@ -1,6 +1,6 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var events = require("../events");
2
+ var assert = require('assert');
3
+ var events = require('../events');
4
4
  var e = new events.EventEmitter;
5
5
  assert.deepEqual(e._events, {});
6
6
  e.setMaxListeners(5);
@@ -1,7 +1,7 @@
1
1
  /* */
2
- var assert = require("assert");
3
- var EventEmitter = require("../events").EventEmitter;
4
- var util = require("util");
2
+ var assert = require('assert');
3
+ var EventEmitter = require('../events').EventEmitter;
4
+ var util = require('util');
5
5
  util.inherits(MyEE, EventEmitter);
6
6
  function MyEE(cb) {
7
7
  this.once(1, cb);
@@ -1 +1 @@
1
- module.exports = require("npm:events@1.0.2/events");
1
+ module.exports = require("npm:events@1.0.2/events.js");
@@ -0,0 +1,11 @@
1
+ Copyright 2008 Fair Oaks Labs, Inc.
2
+
3
+ Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
4
+
5
+ 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
6
+
7
+ 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
8
+
9
+ 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
10
+
11
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
@@ -1,12 +1,16 @@
1
- # ieee754 [![travis][travis-image]][travis-url] [![npm][npm-image]][npm-url] [![downloads][downloads-image]][npm-url]
1
+ # ieee754 [![travis][travis-image]][travis-url] [![npm][npm-image]][npm-url] [![downloads][downloads-image]][downloads-url] [![javascript style guide][standard-image]][standard-url]
2
2
 
3
- [![saucelabs][saucelabs-image]][saucelabs-url]
4
-
5
- [travis-image]: https://img.shields.io/travis/feross/ieee754.svg?style=flat
3
+ [travis-image]: https://img.shields.io/travis/feross/ieee754/master.svg
6
4
  [travis-url]: https://travis-ci.org/feross/ieee754
7
- [npm-image]: https://img.shields.io/npm/v/ieee754.svg?style=flat
5
+ [npm-image]: https://img.shields.io/npm/v/ieee754.svg
8
6
  [npm-url]: https://npmjs.org/package/ieee754
9
- [downloads-image]: https://img.shields.io/npm/dm/ieee754.svg?style=flat
7
+ [downloads-image]: https://img.shields.io/npm/dm/ieee754.svg
8
+ [downloads-url]: https://npmjs.org/package/ieee754
9
+ [standard-image]: https://img.shields.io/badge/code_style-standard-brightgreen.svg
10
+ [standard-url]: https://standardjs.com
11
+
12
+ [![saucelabs][saucelabs-image]][saucelabs-url]
13
+
10
14
  [saucelabs-image]: https://saucelabs.com/browser-matrix/ieee754.svg
11
15
  [saucelabs-url]: https://saucelabs.com/u/ieee754
12
16
 
@@ -42,6 +46,6 @@ The arguments mean the following:
42
46
 
43
47
  The IEEE Standard for Floating-Point Arithmetic (IEEE 754) is a technical standard for floating-point computation. [Read more](http://en.wikipedia.org/wiki/IEEE_floating_point).
44
48
 
45
- ## mit license
49
+ ## license
46
50
 
47
- Copyright (C) 2013 [Feross Aboukhadijeh](http://feross.org) & Romain Beauxis.
51
+ BSD 3 Clause. Copyright (c) 2008, Fair Oaks Labs, Inc.
@@ -0,0 +1,10 @@
1
+ declare namespace ieee754 {
2
+ export function read(
3
+ buffer: Uint8Array, offset: number, isLE: boolean, mLen: number,
4
+ nBytes: number): number;
5
+ export function write(
6
+ buffer: Uint8Array, value: number, offset: number, isLE: boolean,
7
+ mLen: number, nBytes: number): void;
8
+ }
9
+
10
+ export = ieee754;
@@ -1,7 +1,7 @@
1
- /* */
1
+ /*! ieee754. BSD-3-Clause License. Feross Aboukhadijeh <https://feross.org/opensource> */
2
2
  exports.read = function (buffer, offset, isLE, mLen, nBytes) {
3
3
  var e, m
4
- var eLen = nBytes * 8 - mLen - 1
4
+ var eLen = (nBytes * 8) - mLen - 1
5
5
  var eMax = (1 << eLen) - 1
6
6
  var eBias = eMax >> 1
7
7
  var nBits = -7
@@ -14,12 +14,12 @@ exports.read = function (buffer, offset, isLE, mLen, nBytes) {
14
14
  e = s & ((1 << (-nBits)) - 1)
15
15
  s >>= (-nBits)
16
16
  nBits += eLen
17
- for (; nBits > 0; e = e * 256 + buffer[offset + i], i += d, nBits -= 8) {}
17
+ for (; nBits > 0; e = (e * 256) + buffer[offset + i], i += d, nBits -= 8) {}
18
18
 
19
19
  m = e & ((1 << (-nBits)) - 1)
20
20
  e >>= (-nBits)
21
21
  nBits += mLen
22
- for (; nBits > 0; m = m * 256 + buffer[offset + i], i += d, nBits -= 8) {}
22
+ for (; nBits > 0; m = (m * 256) + buffer[offset + i], i += d, nBits -= 8) {}
23
23
 
24
24
  if (e === 0) {
25
25
  e = 1 - eBias
@@ -34,7 +34,7 @@ exports.read = function (buffer, offset, isLE, mLen, nBytes) {
34
34
 
35
35
  exports.write = function (buffer, value, offset, isLE, mLen, nBytes) {
36
36
  var e, m, c
37
- var eLen = nBytes * 8 - mLen - 1
37
+ var eLen = (nBytes * 8) - mLen - 1
38
38
  var eMax = (1 << eLen) - 1
39
39
  var eBias = eMax >> 1
40
40
  var rt = (mLen === 23 ? Math.pow(2, -24) - Math.pow(2, -77) : 0)
@@ -67,7 +67,7 @@ exports.write = function (buffer, value, offset, isLE, mLen, nBytes) {
67
67
  m = 0
68
68
  e = eMax
69
69
  } else if (e + eBias >= 1) {
70
- m = (value * c - 1) * Math.pow(2, mLen)
70
+ m = ((value * c) - 1) * Math.pow(2, mLen)
71
71
  e = e + eBias
72
72
  } else {
73
73
  m = value * Math.pow(2, eBias - 1) * Math.pow(2, mLen)
@@ -0,0 +1,52 @@
1
+ {
2
+ "name": "ieee754",
3
+ "description": "Read/write IEEE754 floating point numbers from/to a Buffer or array-like object",
4
+ "version": "1.2.1",
5
+ "author": {
6
+ "name": "Feross Aboukhadijeh",
7
+ "email": "feross@feross.org",
8
+ "url": "https://feross.org"
9
+ },
10
+ "contributors": [
11
+ "Romain Beauxis <toots@rastageeks.org>"
12
+ ],
13
+ "devDependencies": {
14
+ "airtap": "^3.0.0",
15
+ "standard": "*",
16
+ "tape": "^5.0.1"
17
+ },
18
+ "keywords": [
19
+ "IEEE 754",
20
+ "buffer",
21
+ "convert",
22
+ "floating point",
23
+ "ieee754"
24
+ ],
25
+ "license": "BSD-3-Clause",
26
+ "main": "index.js",
27
+ "types": "index.d.ts",
28
+ "repository": {
29
+ "type": "git",
30
+ "url": "git://github.com/feross/ieee754.git"
31
+ },
32
+ "scripts": {
33
+ "test": "standard && npm run test-node && npm run test-browser",
34
+ "test-browser": "airtap -- test/*.js",
35
+ "test-browser-local": "airtap --local -- test/*.js",
36
+ "test-node": "tape test/*.js"
37
+ },
38
+ "funding": [
39
+ {
40
+ "type": "github",
41
+ "url": "https://github.com/sponsors/feross"
42
+ },
43
+ {
44
+ "type": "patreon",
45
+ "url": "https://www.patreon.com/feross"
46
+ },
47
+ {
48
+ "type": "consulting",
49
+ "url": "https://feross.org/support"
50
+ }
51
+ ]
52
+ }
@@ -0,0 +1 @@
1
+ module.exports = require("npm:ieee754@1.2.1/index.js");
@@ -1,9 +1,9 @@
1
1
 
2
2
  build: components index.js
3
- @component build --dev
3
+ @component build
4
4
 
5
- components: component.json
6
- @component install --dev
5
+ components:
6
+ @Component install
7
7
 
8
8
  clean:
9
9
  rm -fr build components template.js
@@ -0,0 +1,15 @@
1
+
2
+ # indexOf
3
+
4
+ Lame indexOf thing, thanks microsoft
5
+
6
+ ## Example
7
+
8
+ ```js
9
+ var index = require('indexof');
10
+ index(arr, obj);
11
+ ```
12
+
13
+ ## License
14
+
15
+ MIT
@@ -0,0 +1,10 @@
1
+ {
2
+ "name": "indexof",
3
+ "description": "Microsoft sucks",
4
+ "version": "0.0.1",
5
+ "keywords": ["index", "array", "indexOf"],
6
+ "dependencies": {},
7
+ "scripts": [
8
+ "index.js"
9
+ ]
10
+ }
@@ -0,0 +1,11 @@
1
+ /* */
2
+
3
+ var indexOf = [].indexOf;
4
+
5
+ module.exports = function(arr, obj){
6
+ if (indexOf) return arr.indexOf(obj);
7
+ for (var i = 0; i < arr.length; ++i) {
8
+ if (arr[i] === obj) return i;
9
+ }
10
+ return -1;
11
+ };
@@ -0,0 +1,12 @@
1
+ {
2
+ "name": "indexof",
3
+ "description": "Microsoft sucks",
4
+ "version": "0.0.1",
5
+ "keywords": ["index", "array", "indexOf"],
6
+ "dependencies": {},
7
+ "component": {
8
+ "scripts": {
9
+ "indexof/index.js": "index.js"
10
+ }
11
+ }
12
+ }
@@ -0,0 +1 @@
1
+ module.exports = require("npm:indexof@0.0.1/index");
@@ -1,2 +1,2 @@
1
1
  /* */
2
- module.exports = require("util").inherits;
2
+ module.exports = require('util').inherits;
@@ -1 +1 @@
1
- module.exports = require("npm:inherits@2.0.1/inherits_browser");
1
+ module.exports = require("npm:inherits@2.0.1/inherits_browser.js");
@@ -1 +1 @@
1
- module.exports = require("npm:isarray@0.0.1/index");
1
+ module.exports = require("npm:isarray@0.0.1/index.js");