sequenceserver 2.0.0 → 2.1.0

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Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
  217. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
  218. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
  219. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
  223. data/public/vendor/npm/scheduler@0.21.0.js +1 -0
  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
  238. data/public/vendor/npm/util@0.10.3.js +1 -1
  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
  252. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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@@ -1,34 +0,0 @@
1
- /* */
2
- (function(process) {
3
- (function() {
4
- 'use strict';
5
- var child = require("child_process"),
6
- nodejs = '"' + process.execPath + '"',
7
- ret = 0,
8
- suites,
9
- index;
10
- suites = ['runner', 'compat'];
11
- function nextTest() {
12
- var suite = suites[index];
13
- if (index < suites.length) {
14
- child.exec(nodejs + ' ./test/' + suite + '.js', function(err, stdout, stderr) {
15
- if (stdout) {
16
- process.stdout.write(suite + ': ' + stdout);
17
- }
18
- if (stderr) {
19
- process.stderr.write(suite + ': ' + stderr);
20
- }
21
- if (err) {
22
- ret = err.code;
23
- }
24
- index += 1;
25
- nextTest();
26
- });
27
- } else {
28
- process.exit(ret);
29
- }
30
- }
31
- index = 0;
32
- nextTest();
33
- }());
34
- })(require("process"));
@@ -1,418 +0,0 @@
1
- /* */
2
- (function(process) {
3
- var runTests;
4
- function adjustRegexLiteral(key, value) {
5
- 'use strict';
6
- if (key === 'value' && value instanceof RegExp) {
7
- value = value.toString();
8
- }
9
- return value;
10
- }
11
- function NotMatchingError(expected, actual) {
12
- 'use strict';
13
- Error.call(this, 'Expected ');
14
- this.expected = expected;
15
- this.actual = actual;
16
- }
17
- NotMatchingError.prototype = new Error();
18
- function errorToObject(e) {
19
- 'use strict';
20
- var msg = e.toString();
21
- if (msg.substr(0, 6) !== 'Error:') {
22
- if (typeof e.message === 'string') {
23
- msg = 'Error: ' + e.message;
24
- }
25
- }
26
- return {
27
- index: e.index,
28
- lineNumber: e.lineNumber,
29
- column: e.column,
30
- message: msg
31
- };
32
- }
33
- function needLoc(syntax) {
34
- var need = true;
35
- if (typeof syntax.tokens !== 'undefined' && syntax.tokens.length > 0) {
36
- need = (typeof syntax.tokens[0].loc !== 'undefined');
37
- }
38
- if (typeof syntax.comments !== 'undefined' && syntax.comments.length > 0) {
39
- need = (typeof syntax.comments[0].loc !== 'undefined');
40
- }
41
- return need;
42
- }
43
- function needRange(syntax) {
44
- var need = true;
45
- if (typeof syntax.tokens !== 'undefined' && syntax.tokens.length > 0) {
46
- need = (typeof syntax.tokens[0].range !== 'undefined');
47
- }
48
- if (typeof syntax.comments !== 'undefined' && syntax.comments.length > 0) {
49
- need = (typeof syntax.comments[0].range !== 'undefined');
50
- }
51
- return need;
52
- }
53
- function hasAttachedComment(syntax) {
54
- var key;
55
- for (key in syntax) {
56
- if (key === 'leadingComments' || key === 'trailingComments') {
57
- return true;
58
- }
59
- if (syntax[key] && typeof syntax[key] === 'object') {
60
- if (hasAttachedComment(syntax[key])) {
61
- return true;
62
- }
63
- }
64
- }
65
- return false;
66
- }
67
- function testParse(esprima, code, syntax, testOptions) {
68
- 'use strict';
69
- var expected,
70
- tree,
71
- actual,
72
- options,
73
- StringObject,
74
- i,
75
- len,
76
- err;
77
- StringObject = String;
78
- options = {
79
- comment: (typeof syntax.comments !== 'undefined'),
80
- range: needRange(syntax),
81
- loc: needLoc(syntax),
82
- tokens: (typeof syntax.tokens !== 'undefined'),
83
- raw: true,
84
- tolerant: (typeof syntax.errors !== 'undefined'),
85
- source: null,
86
- sourceType: testOptions.sourceType
87
- };
88
- if (options.comment) {
89
- options.attachComment = hasAttachedComment(syntax);
90
- }
91
- if (options.loc) {
92
- options.source = syntax.loc.source;
93
- }
94
- expected = JSON.stringify(syntax, adjustRegexLiteral, 4);
95
- try {
96
- tree = esprima.parse(code, options);
97
- tree = (options.comment || options.tokens || options.tolerant) ? tree : tree.body[0];
98
- if (options.tolerant) {
99
- for (i = 0, len = tree.errors.length; i < len; i += 1) {
100
- tree.errors[i] = errorToObject(tree.errors[i]);
101
- }
102
- }
103
- actual = JSON.stringify(tree, adjustRegexLiteral, 4);
104
- esprima.parse(new StringObject(code), options);
105
- } catch (e) {
106
- throw new NotMatchingError(expected, e.toString());
107
- }
108
- if (expected !== actual) {
109
- throw new NotMatchingError(expected, actual);
110
- }
111
- function filter(key, value) {
112
- if (key === 'value' && value instanceof RegExp) {
113
- value = value.toString();
114
- }
115
- return (key === 'loc' || key === 'range') ? undefined : value;
116
- }
117
- if (options.tolerant) {
118
- return;
119
- }
120
- options.range = false;
121
- options.loc = false;
122
- expected = JSON.stringify(syntax, filter, 4);
123
- try {
124
- tree = esprima.parse(code, options);
125
- tree = (options.comment || options.tokens) ? tree : tree.body[0];
126
- if (options.tolerant) {
127
- for (i = 0, len = tree.errors.length; i < len; i += 1) {
128
- tree.errors[i] = errorToObject(tree.errors[i]);
129
- }
130
- }
131
- actual = JSON.stringify(tree, filter, 4);
132
- } catch (e) {
133
- throw new NotMatchingError(expected, e.toString());
134
- }
135
- if (expected !== actual) {
136
- throw new NotMatchingError(expected, actual);
137
- }
138
- }
139
- function mustHaveLocRange(testName, node, needLoc, needRange, stack) {
140
- var error;
141
- if (node.hasOwnProperty('type')) {
142
- if (needLoc && !node.loc) {
143
- error = "doesn't have 'loc' property";
144
- }
145
- if (needRange && !node.range) {
146
- error = "doesn't have 'range' property";
147
- }
148
- if (error) {
149
- stack = stack.length ? ' at [' + stack.join('][') + ']' : '';
150
- throw new Error("Test '" + testName + "'" + stack + " (type = " + node.type + ") " + error);
151
- }
152
- }
153
- for (i in node) {
154
- if (node.hasOwnProperty(i) && node[i] !== null && typeof node[i] === 'object') {
155
- stack.push(i);
156
- mustHaveLocRange(testName, node[i], needLoc, needRange, stack);
157
- stack.pop();
158
- }
159
- }
160
- }
161
- function testTokenize(esprima, code, tokens, testOptions) {
162
- 'use strict';
163
- var options,
164
- expected,
165
- actual,
166
- tree;
167
- options = {
168
- comment: true,
169
- tolerant: true,
170
- loc: true,
171
- range: true,
172
- sourceType: testOptions.sourceType
173
- };
174
- expected = JSON.stringify(tokens, null, 4);
175
- try {
176
- tree = esprima.tokenize(code, options);
177
- actual = JSON.stringify(tree, null, 4);
178
- } catch (e) {
179
- throw new NotMatchingError(expected, e.toString());
180
- }
181
- if (expected !== actual) {
182
- throw new NotMatchingError(expected, actual);
183
- }
184
- }
185
- function testError(esprima, code, exception, testOptions) {
186
- 'use strict';
187
- var i,
188
- options,
189
- expected,
190
- actual,
191
- err,
192
- handleInvalidRegexFlag,
193
- tokenize,
194
- sourceType;
195
- options = [{sourceType: testOptions.sourceType}, {
196
- sourceType: testOptions.sourceType,
197
- comment: true
198
- }, {
199
- sourceType: testOptions.sourceType,
200
- raw: true
201
- }, {
202
- sourceType: testOptions.sourceType,
203
- raw: true,
204
- comment: true
205
- }];
206
- handleInvalidRegexFlag = false;
207
- try {
208
- 'test'.match(new RegExp('[a-z]', 'x'));
209
- } catch (e) {
210
- handleInvalidRegexFlag = true;
211
- }
212
- exception.description = exception.message.replace(/Error: Line [0-9]+: /, '');
213
- if (exception.tokenize) {
214
- tokenize = true;
215
- exception.tokenize = undefined;
216
- }
217
- expected = JSON.stringify(exception);
218
- for (i = 0; i < options.length; i += 1) {
219
- try {
220
- if (tokenize) {
221
- esprima.tokenize(code, options[i]);
222
- } else {
223
- esprima.parse(code, options[i]);
224
- }
225
- } catch (e) {
226
- err = errorToObject(e);
227
- err.description = e.description;
228
- actual = JSON.stringify(err);
229
- }
230
- if (expected !== actual) {
231
- if (exception.message.indexOf('Invalid regular expression') > 0) {
232
- if (typeof actual === 'undefined' && !handleInvalidRegexFlag) {
233
- return;
234
- }
235
- }
236
- throw new NotMatchingError(expected, actual);
237
- }
238
- }
239
- }
240
- function testAPI(esprima, code, result) {
241
- 'use strict';
242
- var expected,
243
- res,
244
- actual;
245
- expected = JSON.stringify(result.result, null, 4);
246
- try {
247
- if (typeof result.property !== 'undefined') {
248
- res = esprima[result.property];
249
- } else {
250
- res = esprima[result.call].apply(esprima, result.args);
251
- }
252
- actual = JSON.stringify(res, adjustRegexLiteral, 4);
253
- } catch (e) {
254
- throw new NotMatchingError(expected, e.toString());
255
- }
256
- if (expected !== actual) {
257
- throw new NotMatchingError(expected, actual);
258
- }
259
- }
260
- function runTest(esprima, code, result, options) {
261
- 'use strict';
262
- if (result.hasOwnProperty('lineNumber')) {
263
- testError(esprima, code, result, options);
264
- } else if (result.hasOwnProperty('result')) {
265
- testAPI(esprima, code, result);
266
- } else if (result instanceof Array) {
267
- testTokenize(esprima, code, result, options);
268
- } else {
269
- testParse(esprima, code, result, options);
270
- }
271
- }
272
- if (typeof window !== 'undefined') {
273
- runTests = function() {
274
- 'use strict';
275
- var total = 0,
276
- failures = 0,
277
- category,
278
- fixture,
279
- source,
280
- tick,
281
- expected,
282
- index,
283
- len;
284
- function setText(el, str) {
285
- if (typeof el.innerText === 'string') {
286
- el.innerText = str;
287
- } else {
288
- el.textContent = str;
289
- }
290
- }
291
- function startCategory(category) {
292
- var report,
293
- e;
294
- report = document.getElementById('report');
295
- e = document.createElement('h4');
296
- setText(e, category);
297
- report.appendChild(e);
298
- }
299
- function reportSuccess(code) {
300
- var report,
301
- e;
302
- report = document.getElementById('report');
303
- e = document.createElement('pre');
304
- e.setAttribute('class', 'code');
305
- setText(e, code);
306
- report.appendChild(e);
307
- }
308
- function reportFailure(code, expected, actual) {
309
- var report,
310
- e;
311
- report = document.getElementById('report');
312
- e = document.createElement('p');
313
- setText(e, 'Code:');
314
- report.appendChild(e);
315
- e = document.createElement('pre');
316
- e.setAttribute('class', 'code');
317
- setText(e, code);
318
- report.appendChild(e);
319
- e = document.createElement('p');
320
- setText(e, 'Expected');
321
- report.appendChild(e);
322
- e = document.createElement('pre');
323
- e.setAttribute('class', 'expected');
324
- setText(e, expected);
325
- report.appendChild(e);
326
- e = document.createElement('p');
327
- setText(e, 'Actual');
328
- report.appendChild(e);
329
- e = document.createElement('pre');
330
- e.setAttribute('class', 'actual');
331
- setText(e, actual);
332
- report.appendChild(e);
333
- }
334
- setText(document.getElementById('version'), esprima.version);
335
- tick = new Date();
336
- for (category in testFixture) {
337
- if (testFixture.hasOwnProperty(category)) {
338
- var categoryOptions = testFixtureOptions[category] || {};
339
- startCategory(category);
340
- fixture = testFixture[category];
341
- for (source in fixture) {
342
- if (fixture.hasOwnProperty(source)) {
343
- var sourceOptions = categoryOptions.hasOwnProperty(source) ? categoryOptions[source] : categoryOptions;
344
- expected = fixture[source];
345
- total += 1;
346
- try {
347
- runTest(esprima, source, expected, sourceOptions);
348
- reportSuccess(source, JSON.stringify(expected, null, 4));
349
- } catch (e) {
350
- failures += 1;
351
- reportFailure(source, e.expected, e.actual);
352
- }
353
- }
354
- }
355
- }
356
- }
357
- tick = (new Date()) - tick;
358
- if (failures > 0) {
359
- document.getElementById('status').className = 'alert-box alert';
360
- setText(document.getElementById('status'), total + ' tests. ' + 'Failures: ' + failures + '. ' + tick + ' ms.');
361
- } else {
362
- document.getElementById('status').className = 'alert-box success';
363
- setText(document.getElementById('status'), total + ' tests. ' + 'No failure. ' + tick + ' ms.');
364
- }
365
- };
366
- } else {
367
- (function() {
368
- 'use strict';
369
- var esprima = require("../esprima"),
370
- vm = require("vm"),
371
- fs = require("fs"),
372
- diff = require("json-diff").diffString,
373
- total = 0,
374
- failures = [],
375
- tick = new Date(),
376
- expected,
377
- header;
378
- vm.runInThisContext(fs.readFileSync(__dirname + '/test.js', 'utf-8'));
379
- vm.runInThisContext(fs.readFileSync(__dirname + '/harmonytest.js', 'utf-8'));
380
- vm.runInThisContext(fs.readFileSync(__dirname + '/fbtest.rec.js', 'utf-8'));
381
- vm.runInThisContext(fs.readFileSync(__dirname + '/harmonymodulestest.js', 'utf-8'));
382
- Object.keys(testFixture).forEach(function(category) {
383
- var categoryOptions = testFixtureOptions[category] || {};
384
- Object.keys(testFixture[category]).forEach(function(source) {
385
- var sourceOptions = categoryOptions.hasOwnProperty(source) ? categoryOptions[source] : categoryOptions;
386
- total += 1;
387
- expected = testFixture[category][source];
388
- if (!expected.hasOwnProperty('lineNumber') && !expected.hasOwnProperty('result')) {
389
- mustHaveLocRange(source, expected, needLoc(expected), needRange(expected), []);
390
- }
391
- try {
392
- runTest(esprima, source, expected, sourceOptions);
393
- } catch (e) {
394
- e.source = source;
395
- failures.push(e);
396
- }
397
- });
398
- });
399
- tick = (new Date()) - tick;
400
- header = total + ' tests. ' + failures.length + ' failures. ' + tick + ' ms';
401
- if (failures.length) {
402
- console.error(header);
403
- failures.forEach(function(failure) {
404
- try {
405
- var expectedObject = JSON.parse(failure.expected);
406
- var actualObject = JSON.parse(failure.actual);
407
- console.error(failure.source + ': Expected\n ' + failure.expected.split('\n').join('\n ') + '\nto match\n ' + failure.actual + '\nDiff:\n' + diff(expectedObject, actualObject));
408
- } catch (ex) {
409
- console.error(failure.source + ': Expected\n ' + failure.expected.split('\n').join('\n ') + '\nto match\n ' + failure.actual);
410
- }
411
- });
412
- } else {
413
- console.log(header);
414
- }
415
- process.exit(failures.length === 0 ? 0 : 1);
416
- }());
417
- }
418
- })(require("process"));