sequenceserver 2.0.0 → 2.1.0
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- checksums.yaml +4 -4
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +36 -30
- data/lib/sequenceserver/config.rb +49 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/routes.rb +69 -7
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +2 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +1 -0
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +315 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +99 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +41 -0
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
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- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
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- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/10.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/11.js +1 -1
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single file JS installs), but some people want a JS package manager and are
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It overrides the `Module._extensions['.js']` in Node to automatically prepend
|
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the amdefine snippet above. So, it will affect any .js file loaded by your
|
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app.
|
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|
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|
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## define() usage
|
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|
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|
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|
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It is best if you use the anonymous forms of define() in your module:
|
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|
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|
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|
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```javascript
|
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define(function (require) {
|
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var dependency = require('dependency');
|
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});
|
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```
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or
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```javascript
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define(['dependency'], function (dependency) {
|
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|
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});
|
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```
|
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|
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## RequireJS optimizer integration. <a name="optimizer"></name>
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|
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Version 1.0.3 of the [RequireJS optimizer](http://requirejs.org/docs/optimization.html)
|
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will have support for stripping the `if (typeof define !== 'function')` check
|
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mentioned above, so you can include this snippet for code that runs in the
|
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browser, but avoid taking the cost of the if() statement once the code is
|
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optimized for deployment.
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## Node 0.4 Support
|
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|
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If you want to support Node 0.4, then add `require` as the second parameter to amdefine:
|
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|
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```javascript
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//Only if you want Node 0.4. If using 0.5 or later, use the above snippet.
|
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if (typeof define !== 'function') { var define = require('amdefine')(module, require) }
|
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```
|
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|
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## Limitations
|
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|
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|
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### Synchronous vs Asynchronous
|
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|
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|
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amdefine creates a define() function that is callable by your code. It will
|
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execute and trace dependencies and call the factory function *synchronously*,
|
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to keep the behavior in line with Node's synchronous dependency tracing.
|
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|
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The exception: calling AMD's callback-style require() from inside a factory
|
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function. The require callback is called on process.nextTick():
|
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|
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|
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|
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```javascript
|
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define(function (require) {
|
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|
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require(['a'], function(a) {
|
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|
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//'a' is loaded synchronously, but
|
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//this callback is called on process.nextTick().
|
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|
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});
|
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|
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});
|
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|
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```
|
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|
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### Loader Plugins
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|
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Loader plugins are supported as long as they call their load() callbacks
|
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synchronously. So ones that do network requests will not work. However plugins
|
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like [text](http://requirejs.org/docs/api.html#text) can load text files locally.
|
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|
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|
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The plugin API's `load.fromText()` is **not supported** in amdefine, so this means
|
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transpiler plugins like the [CoffeeScript loader plugin](https://github.com/jrburke/require-cs)
|
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|
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will not work. This may be fixable, but it is a bit complex, and I do not have
|
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|
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enough node-fu to figure it out yet. See the source for amdefine.js if you want
|
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|
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to get an idea of the issues involved.
|
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|
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|
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|
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## Tests
|
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|
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|
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|
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To run the tests, cd to **tests** and run:
|
163
|
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|
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|
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```
|
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|
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node all.js
|
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node all-intercept.js
|
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|
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```
|
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|
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|
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|
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## License
|
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|
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|
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|
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New BSD and MIT. Check the LICENSE file for all the details.
|
@@ -1,200 +0,0 @@
|
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|
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/* */
|
2
|
-
(function(process) {
|
3
|
-
'use strict';
|
4
|
-
function amdefine(module, requireFn) {
|
5
|
-
'use strict';
|
6
|
-
var defineCache = {},
|
7
|
-
loaderCache = {},
|
8
|
-
alreadyCalled = false,
|
9
|
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path = require("path"),
|
10
|
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makeRequire,
|
11
|
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stringRequire;
|
12
|
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function trimDots(ary) {
|
13
|
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var i,
|
14
|
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part;
|
15
|
-
for (i = 0; ary[i]; i += 1) {
|
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part = ary[i];
|
17
|
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if (part === '.') {
|
18
|
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ary.splice(i, 1);
|
19
|
-
i -= 1;
|
20
|
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} else if (part === '..') {
|
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|
-
if (i === 1 && (ary[2] === '..' || ary[0] === '..')) {
|
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|
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break;
|
23
|
-
} else if (i > 0) {
|
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ary.splice(i - 1, 2);
|
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-
i -= 2;
|
26
|
-
}
|
27
|
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}
|
28
|
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}
|
29
|
-
}
|
30
|
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function normalize(name, baseName) {
|
31
|
-
var baseParts;
|
32
|
-
if (name && name.charAt(0) === '.') {
|
33
|
-
if (baseName) {
|
34
|
-
baseParts = baseName.split('/');
|
35
|
-
baseParts = baseParts.slice(0, baseParts.length - 1);
|
36
|
-
baseParts = baseParts.concat(name.split('/'));
|
37
|
-
trimDots(baseParts);
|
38
|
-
name = baseParts.join('/');
|
39
|
-
}
|
40
|
-
}
|
41
|
-
return name;
|
42
|
-
}
|
43
|
-
function makeNormalize(relName) {
|
44
|
-
return function(name) {
|
45
|
-
return normalize(name, relName);
|
46
|
-
};
|
47
|
-
}
|
48
|
-
function makeLoad(id) {
|
49
|
-
function load(value) {
|
50
|
-
loaderCache[id] = value;
|
51
|
-
}
|
52
|
-
load.fromText = function(id, text) {
|
53
|
-
throw new Error('amdefine does not implement load.fromText');
|
54
|
-
};
|
55
|
-
return load;
|
56
|
-
}
|
57
|
-
makeRequire = function(systemRequire, exports, module, relId) {
|
58
|
-
function amdRequire(deps, callback) {
|
59
|
-
if (typeof deps === 'string') {
|
60
|
-
return stringRequire(systemRequire, exports, module, deps, relId);
|
61
|
-
} else {
|
62
|
-
deps = deps.map(function(depName) {
|
63
|
-
return stringRequire(systemRequire, exports, module, depName, relId);
|
64
|
-
});
|
65
|
-
if (callback) {
|
66
|
-
process.nextTick(function() {
|
67
|
-
callback.apply(null, deps);
|
68
|
-
});
|
69
|
-
}
|
70
|
-
}
|
71
|
-
}
|
72
|
-
amdRequire.toUrl = function(filePath) {
|
73
|
-
if (filePath.indexOf('.') === 0) {
|
74
|
-
return normalize(filePath, path.dirname(module.filename));
|
75
|
-
} else {
|
76
|
-
return filePath;
|
77
|
-
}
|
78
|
-
};
|
79
|
-
return amdRequire;
|
80
|
-
};
|
81
|
-
requireFn = requireFn || function req() {
|
82
|
-
return module.require.apply(module, arguments);
|
83
|
-
};
|
84
|
-
function runFactory(id, deps, factory) {
|
85
|
-
var r,
|
86
|
-
e,
|
87
|
-
m,
|
88
|
-
result;
|
89
|
-
if (id) {
|
90
|
-
e = loaderCache[id] = {};
|
91
|
-
m = {
|
92
|
-
id: id,
|
93
|
-
uri: __filename,
|
94
|
-
exports: e
|
95
|
-
};
|
96
|
-
r = makeRequire(requireFn, e, m, id);
|
97
|
-
} else {
|
98
|
-
if (alreadyCalled) {
|
99
|
-
throw new Error('amdefine with no module ID cannot be called more than once per file.');
|
100
|
-
}
|
101
|
-
alreadyCalled = true;
|
102
|
-
e = module.exports;
|
103
|
-
m = module;
|
104
|
-
r = makeRequire(requireFn, e, m, module.id);
|
105
|
-
}
|
106
|
-
if (deps) {
|
107
|
-
deps = deps.map(function(depName) {
|
108
|
-
return r(depName);
|
109
|
-
});
|
110
|
-
}
|
111
|
-
if (typeof factory === 'function') {
|
112
|
-
result = factory.apply(m.exports, deps);
|
113
|
-
} else {
|
114
|
-
result = factory;
|
115
|
-
}
|
116
|
-
if (result !== undefined) {
|
117
|
-
m.exports = result;
|
118
|
-
if (id) {
|
119
|
-
loaderCache[id] = m.exports;
|
120
|
-
}
|
121
|
-
}
|
122
|
-
}
|
123
|
-
stringRequire = function(systemRequire, exports, module, id, relId) {
|
124
|
-
var index = id.indexOf('!'),
|
125
|
-
originalId = id,
|
126
|
-
prefix,
|
127
|
-
plugin;
|
128
|
-
if (index === -1) {
|
129
|
-
id = normalize(id, relId);
|
130
|
-
if (id === 'require') {
|
131
|
-
return makeRequire(systemRequire, exports, module, relId);
|
132
|
-
} else if (id === 'exports') {
|
133
|
-
return exports;
|
134
|
-
} else if (id === 'module') {
|
135
|
-
return module;
|
136
|
-
} else if (loaderCache.hasOwnProperty(id)) {
|
137
|
-
return loaderCache[id];
|
138
|
-
} else if (defineCache[id]) {
|
139
|
-
runFactory.apply(null, defineCache[id]);
|
140
|
-
return loaderCache[id];
|
141
|
-
} else {
|
142
|
-
if (systemRequire) {
|
143
|
-
return systemRequire(originalId);
|
144
|
-
} else {
|
145
|
-
throw new Error('No module with ID: ' + id);
|
146
|
-
}
|
147
|
-
}
|
148
|
-
} else {
|
149
|
-
prefix = id.substring(0, index);
|
150
|
-
id = id.substring(index + 1, id.length);
|
151
|
-
plugin = stringRequire(systemRequire, exports, module, prefix, relId);
|
152
|
-
if (plugin.normalize) {
|
153
|
-
id = plugin.normalize(id, makeNormalize(relId));
|
154
|
-
} else {
|
155
|
-
id = normalize(id, relId);
|
156
|
-
}
|
157
|
-
if (loaderCache[id]) {
|
158
|
-
return loaderCache[id];
|
159
|
-
} else {
|
160
|
-
plugin.load(id, makeRequire(systemRequire, exports, module, relId), makeLoad(id), {});
|
161
|
-
return loaderCache[id];
|
162
|
-
}
|
163
|
-
}
|
164
|
-
};
|
165
|
-
function define(id, deps, factory) {
|
166
|
-
if (Array.isArray(id)) {
|
167
|
-
factory = deps;
|
168
|
-
deps = id;
|
169
|
-
id = undefined;
|
170
|
-
} else if (typeof id !== 'string') {
|
171
|
-
factory = id;
|
172
|
-
id = deps = undefined;
|
173
|
-
}
|
174
|
-
if (deps && !Array.isArray(deps)) {
|
175
|
-
factory = deps;
|
176
|
-
deps = undefined;
|
177
|
-
}
|
178
|
-
if (!deps) {
|
179
|
-
deps = ['require', 'exports', 'module'];
|
180
|
-
}
|
181
|
-
if (id) {
|
182
|
-
defineCache[id] = [id, deps, factory];
|
183
|
-
} else {
|
184
|
-
runFactory(id, deps, factory);
|
185
|
-
}
|
186
|
-
}
|
187
|
-
define.require = function(id) {
|
188
|
-
if (loaderCache[id]) {
|
189
|
-
return loaderCache[id];
|
190
|
-
}
|
191
|
-
if (defineCache[id]) {
|
192
|
-
runFactory.apply(null, defineCache[id]);
|
193
|
-
return loaderCache[id];
|
194
|
-
}
|
195
|
-
};
|
196
|
-
define.amd = {};
|
197
|
-
return define;
|
198
|
-
}
|
199
|
-
module.exports = amdefine;
|
200
|
-
})(require("process"));
|
@@ -1,24 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
var inserted,
|
3
|
-
Module = require("module"),
|
4
|
-
fs = require("fs"),
|
5
|
-
existingExtFn = Module._extensions['.js'],
|
6
|
-
amdefineRegExp = /amdefine\.js/;
|
7
|
-
inserted = "if (typeof define !== 'function') {var define = require('amdefine')(module)}";
|
8
|
-
function stripBOM(content) {
|
9
|
-
if (content.charCodeAt(0) === 0xFEFF) {
|
10
|
-
content = content.slice(1);
|
11
|
-
}
|
12
|
-
return content;
|
13
|
-
}
|
14
|
-
function intercept(module, filename) {
|
15
|
-
var content = stripBOM(fs.readFileSync(filename, 'utf8'));
|
16
|
-
if (!amdefineRegExp.test(module.id)) {
|
17
|
-
content = inserted + content;
|
18
|
-
}
|
19
|
-
module._compile(content, filename);
|
20
|
-
}
|
21
|
-
intercept._id = 'amdefine/intercept';
|
22
|
-
if (!existingExtFn._id || existingExtFn._id !== intercept._id) {
|
23
|
-
Module._extensions['.js'] = intercept;
|
24
|
-
}
|
@@ -1,16 +0,0 @@
|
|
1
|
-
{
|
2
|
-
"name": "amdefine",
|
3
|
-
"description": "Provide AMD's define() API for declaring modules in the AMD format",
|
4
|
-
"version": "1.0.0",
|
5
|
-
"homepage": "http://github.com/jrburke/amdefine",
|
6
|
-
"author": "James Burke <jrburke@gmail.com> (http://github.com/jrburke)",
|
7
|
-
"license": "BSD-3-Clause AND MIT",
|
8
|
-
"repository": {
|
9
|
-
"type": "git",
|
10
|
-
"url": "https://github.com/jrburke/amdefine.git"
|
11
|
-
},
|
12
|
-
"main": "./amdefine.js",
|
13
|
-
"engines": {
|
14
|
-
"node": ">=0.4.2"
|
15
|
-
}
|
16
|
-
}
|
@@ -1 +0,0 @@
|
|
1
|
-
module.exports = require("npm:amdefine@1.0.0/amdefine");
|
@@ -1,20 +0,0 @@
|
|
1
|
-
Copyright (c) 2012 Andrew Nesbitt
|
2
|
-
|
3
|
-
Permission is hereby granted, free of charge, to any person obtaining
|
4
|
-
a copy of this software and associated documentation files (the
|
5
|
-
"Software"), to deal in the Software without restriction, including
|
6
|
-
without limitation the rights to use, copy, modify, merge, publish,
|
7
|
-
distribute, sublicense, and/or sell copies of the Software, and to
|
8
|
-
permit persons to whom the Software is furnished to do so, subject to
|
9
|
-
the following conditions:
|
10
|
-
|
11
|
-
The above copyright notice and this permission notice shall be
|
12
|
-
included in all copies or substantial portions of the Software.
|
13
|
-
|
14
|
-
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
15
|
-
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
|
16
|
-
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
17
|
-
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
|
18
|
-
LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
|
19
|
-
OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
|
20
|
-
WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
|
@@ -1,30 +0,0 @@
|
|
1
|
-
# Base62.js
|
2
|
-
[![build status](https://secure.travis-ci.org/andrew/base62.js.png)](http://travis-ci.org/andrew/base62.js)
|
3
|
-
|
4
|
-
A javascript Base62 encode/decoder for node.js
|
5
|
-
|
6
|
-
## Install
|
7
|
-
|
8
|
-
npm install base62
|
9
|
-
|
10
|
-
## Usage
|
11
|
-
|
12
|
-
Base62 = require('base62')
|
13
|
-
Base62.encode(999) // 'g7'
|
14
|
-
Base62.decode('g7') // 999
|
15
|
-
|
16
|
-
## Development
|
17
|
-
|
18
|
-
Source hosted at [GitHub](http://github.com/andrew/base62.js).
|
19
|
-
Report Issues/Feature requests on [GitHub Issues](http://github.com/andrew/split/base62.js).
|
20
|
-
|
21
|
-
### Note on Patches/Pull Requests
|
22
|
-
|
23
|
-
* Fork the project.
|
24
|
-
* Make your feature addition or bug fix.
|
25
|
-
* Add tests for it. This is important so I don't break it in a future version unintentionally.
|
26
|
-
* Send me a pull request. Bonus points for topic branches.
|
27
|
-
|
28
|
-
## Copyright
|
29
|
-
|
30
|
-
Copyright (c) 2012 Andrew Nesbitt. See [LICENSE](https://github.com/andrew/base62.js/blob/master/LICENSE) for details.
|
@@ -1,28 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
var Base62 = (function (my) {
|
3
|
-
my.chars = ["0", "1", "2", "3", "4", "5", "6", "7", "8", "9", "a", "b", "c", "d", "e", "f", "g", "h", "i", "j", "k", "l", "m", "n", "o", "p", "q", "r", "s", "t", "u", "v", "w", "x", "y", "z", "A", "B", "C", "D", "E", "F", "G", "H", "I", "J", "K", "L", "M", "N", "O", "P", "Q", "R", "S", "T", "U", "V", "W", "X", "Y", "Z"]
|
4
|
-
|
5
|
-
my.encode = function(i){
|
6
|
-
if (i === 0) {return '0'}
|
7
|
-
var s = ''
|
8
|
-
while (i > 0) {
|
9
|
-
s = this.chars[i % 62] + s
|
10
|
-
i = Math.floor(i/62)
|
11
|
-
}
|
12
|
-
return s
|
13
|
-
};
|
14
|
-
my.decode = function(a,b,c,d){
|
15
|
-
for (
|
16
|
-
b = c = (
|
17
|
-
a === (/\W|_|^$/.test(a += "") || a)
|
18
|
-
) - 1;
|
19
|
-
d = a.charCodeAt(c++);
|
20
|
-
)
|
21
|
-
b = b * 62 + d - [, 48, 29, 87][d >> 5];
|
22
|
-
return b
|
23
|
-
};
|
24
|
-
|
25
|
-
return my;
|
26
|
-
}({}));
|
27
|
-
|
28
|
-
module.exports = Base62
|
@@ -1,21 +0,0 @@
|
|
1
|
-
{
|
2
|
-
"author": "Andrew Nesbitt <andrewnez@gmail.com> (http://andrew-nesbitt.com/)",
|
3
|
-
"name": "base62",
|
4
|
-
"description": "Javascript Base62 encode/decoder",
|
5
|
-
"keywords": ["base-62"],
|
6
|
-
"version": "0.1.1",
|
7
|
-
"repository": {
|
8
|
-
"type": "git",
|
9
|
-
"url": "git://github.com/andrew/base62.js.git"
|
10
|
-
},
|
11
|
-
"main": "base62.js",
|
12
|
-
"engines": {
|
13
|
-
"node": "*"
|
14
|
-
},
|
15
|
-
"scripts": {
|
16
|
-
"test": "mocha test"
|
17
|
-
},
|
18
|
-
"devDependencies": {
|
19
|
-
"mocha": "1.7.x"
|
20
|
-
}
|
21
|
-
}
|
@@ -1,13 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
var assert = require("assert");
|
3
|
-
var Base62 = require("../base62");
|
4
|
-
describe("encode", function() {
|
5
|
-
it("should encode a number to a Base62 string", function() {
|
6
|
-
assert.equal(Base62.encode(999), 'g7');
|
7
|
-
});
|
8
|
-
});
|
9
|
-
describe("decode", function() {
|
10
|
-
it("should decode a number from a Base62 string", function() {
|
11
|
-
assert.equal(Base62.decode('g7'), 999);
|
12
|
-
});
|
13
|
-
});
|
@@ -1 +0,0 @@
|
|
1
|
-
module.exports = require("npm:base62@0.1.1/base62");
|