sequenceserver 2.0.0 → 2.1.0

Sign up to get free protection for your applications and to get access to all the features.

Potentially problematic release.


This version of sequenceserver might be problematic. Click here for more details.

Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
  217. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
  218. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
  219. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
  223. data/public/vendor/npm/scheduler@0.21.0.js +1 -0
  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
  238. data/public/vendor/npm/util@0.10.3.js +1 -1
  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
  252. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
  253. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/11.js +1 -1
  254. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/17.js +1 -1
  255. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/5.js +1 -1
  256. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/6.js +1 -1
  257. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/9.js +1 -1
  258. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
  259. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
  260. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
  261. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
  262. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
  263. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
  264. data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
  265. data/public/vendor/npm/webshim@1.15.8/src/shims/color-picker.js +1 -1
  266. data/public/vendor/npm/webshim@1.15.8/src/shims/combos/10.js +1 -1
  267. data/public/vendor/npm/webshim@1.15.8/src/shims/combos/11.js +1 -1
  268. data/public/vendor/npm/webshim@1.15.8/src/shims/combos/17.js +1 -1
  269. data/public/vendor/npm/webshim@1.15.8/src/shims/combos/5.js +1 -1
  270. data/public/vendor/npm/webshim@1.15.8/src/shims/combos/6.js +1 -1
  271. data/public/vendor/npm/webshim@1.15.8/src/shims/combos/9.js +1 -1
  272. data/public/vendor/npm/webshim@1.15.8/src/shims/es6.js +1 -1
  273. data/public/vendor/npm/webshim@1.15.8/src/shims/excanvas.js +1 -1
  274. data/public/vendor/npm/webshim@1.15.8/src/shims/form-number-date-ui.js +1 -1
  275. data/public/vendor/npm/webshim@1.15.8/src/shims/moxie/js/moxie-html4.js +1 -1
  276. data/public/vendor/npm/webshim@1.15.8/src/shims/moxie/js/moxie-swf.js +1 -1
  277. data/public/vendor/npm/webshim@1.15.8/src/shims/sizzle.js +1 -1
  278. data/public/vendor/npm/webshim@1.15.8/tests/dist/jquery.js +1 -1
  279. data/public/vendor/npm/webshim@1.15.8/tests/jquery/unit/core.js +1 -1
  280. data/public/vendor/npm/webshim@1.15.8/tests/jquery/unit/event.js +1388 -711
  281. data/public/vendor/npm/webshim@1.15.8/tests/qunit/qunit.js +1 -1
  282. data/public/vendor/npm/webshim@1.15.8/tests/test-ext/jquery-1-custom.js +1 -1
  283. data/public/vendor/npm/webshim@1.15.8/tests/test-ext/jquery-2-custom.js +1 -1
  284. data/public/vendor/npm/webshim@1.15.8/tests/test-ext/punycode.js +1 -1
  285. data/public/vendor/system-polyfills.js +865 -1
  286. data/views/blastn_options.erb +291 -0
  287. data/views/blastp_options.erb +288 -0
  288. data/views/blastx_options.erb +318 -0
  289. data/views/error.erb +12 -0
  290. data/views/layout.erb +2 -30
  291. data/views/report.erb +0 -8
  292. data/views/search.erb +16 -9
  293. data/views/tblastn_options.erb +266 -0
  294. data/views/tblastx_options.erb +291 -0
  295. metadata +318 -439
  296. data/public/vendor/github/jspm/nodelibs-buffer@0.1.0.js +0 -1
  297. data/public/vendor/github/jspm/nodelibs-module@0.1.0/index.js +0 -1
  298. data/public/vendor/github/jspm/nodelibs-module@0.1.0.js +0 -1
  299. data/public/vendor/github/jspm/nodelibs-process@0.1.1.js +0 -1
  300. data/public/vendor/npm/amdefine@1.0.0/LICENSE +0 -58
  301. data/public/vendor/npm/amdefine@1.0.0/README.md +0 -171
  302. data/public/vendor/npm/amdefine@1.0.0/amdefine.js +0 -200
  303. data/public/vendor/npm/amdefine@1.0.0/intercept.js +0 -24
  304. data/public/vendor/npm/amdefine@1.0.0/package.json +0 -16
  305. data/public/vendor/npm/amdefine@1.0.0.js +0 -1
  306. data/public/vendor/npm/base62@0.1.1/LICENSE +0 -20
  307. data/public/vendor/npm/base62@0.1.1/Readme.md +0 -30
  308. data/public/vendor/npm/base62@0.1.1/base62.js +0 -28
  309. data/public/vendor/npm/base62@0.1.1/package.json +0 -21
  310. data/public/vendor/npm/base62@0.1.1/test/test.js +0 -13
  311. data/public/vendor/npm/base62@0.1.1.js +0 -1
  312. data/public/vendor/npm/base64-js@0.0.8/lib/b64.js +0 -125
  313. data/public/vendor/npm/base64-js@0.0.8/package.json +0 -34
  314. data/public/vendor/npm/base64-js@0.0.8/test/convert.js +0 -39
  315. data/public/vendor/npm/base64-js@0.0.8/test/url-safe.js +0 -15
  316. data/public/vendor/npm/base64-js@0.0.8.js +0 -1
  317. data/public/vendor/npm/buffer@3.4.3/index.js +0 -1533
  318. data/public/vendor/npm/buffer@3.4.3/package.json +0 -67
  319. data/public/vendor/npm/buffer@3.4.3/test/_polyfill.js +0 -152
  320. data/public/vendor/npm/buffer@3.4.3/test/base64.js +0 -33
  321. data/public/vendor/npm/buffer@3.4.3/test/basic.js +0 -58
  322. data/public/vendor/npm/buffer@3.4.3/test/compare.js +0 -53
  323. data/public/vendor/npm/buffer@3.4.3/test/constructor.js +0 -132
  324. data/public/vendor/npm/buffer@3.4.3/test/deprecated.js +0 -21
  325. data/public/vendor/npm/buffer@3.4.3/test/from-string.js +0 -105
  326. data/public/vendor/npm/buffer@3.4.3/test/methods.js +0 -109
  327. data/public/vendor/npm/buffer@3.4.3/test/node/README.txt +0 -1
  328. data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-ascii.js +0 -20
  329. data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-bytelength.js +0 -38
  330. data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-concat.js +0 -26
  331. data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-indexof.js +0 -78
  332. data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-inspect.js +0 -31
  333. data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer.js +0 -804
  334. data/public/vendor/npm/buffer@3.4.3/test/node-es6/README.txt +0 -1
  335. data/public/vendor/npm/buffer@3.4.3/test/node-es6/test-buffer-arraybuffer.js +0 -37
  336. data/public/vendor/npm/buffer@3.4.3/test/node-es6/test-buffer-iterator.js +0 -32
  337. data/public/vendor/npm/buffer@3.4.3/test/slice.js +0 -33
  338. data/public/vendor/npm/buffer@3.4.3/test/static.js +0 -32
  339. data/public/vendor/npm/buffer@3.4.3/test/to-string.js +0 -106
  340. data/public/vendor/npm/buffer@3.4.3/test/write.js +0 -90
  341. data/public/vendor/npm/buffer@3.4.3.js +0 -1
  342. data/public/vendor/npm/core-util-is@1.0.1/float.patch +0 -604
  343. data/public/vendor/npm/core-util-is@1.0.1/lib/util.js +0 -66
  344. data/public/vendor/npm/core-util-is@1.0.1/util.js +0 -66
  345. data/public/vendor/npm/core-util-is@1.0.1.js +0 -1
  346. data/public/vendor/npm/envify@3.4.0/README.md +0 -145
  347. data/public/vendor/npm/envify@3.4.0/bin/envify +0 -17
  348. data/public/vendor/npm/envify@3.4.0/custom.js +0 -33
  349. data/public/vendor/npm/envify@3.4.0/index.js +0 -4
  350. data/public/vendor/npm/envify@3.4.0/package.json +0 -35
  351. data/public/vendor/npm/envify@3.4.0/visitors.js +0 -33
  352. data/public/vendor/npm/envify@3.4.0.js +0 -1
  353. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/bin/esparse.js +0 -90
  354. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/bin/esvalidate.js +0 -145
  355. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/esprima.js +0 -6191
  356. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/package.json +0 -72
  357. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/compat.js +0 -167
  358. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/reflect.js +0 -421
  359. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/run.js +0 -34
  360. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/runner.js +0 -418
  361. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/test.js +0 -34730
  362. data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb.js +0 -1
  363. data/public/vendor/npm/ieee754@1.1.6/LICENSE +0 -56
  364. data/public/vendor/npm/ieee754@1.1.6/package.json +0 -34
  365. data/public/vendor/npm/ieee754@1.1.6/test/basic.js +0 -20
  366. data/public/vendor/npm/ieee754@1.1.6.js +0 -1
  367. data/public/vendor/npm/is-array@1.0.1/History.md +0 -11
  368. data/public/vendor/npm/is-array@1.0.1/Readme.md +0 -27
  369. data/public/vendor/npm/is-array@1.0.1/component.json +0 -13
  370. data/public/vendor/npm/is-array@1.0.1/index.js +0 -33
  371. data/public/vendor/npm/is-array@1.0.1/package.json +0 -10
  372. data/public/vendor/npm/is-array@1.0.1/test/test.html +0 -46
  373. data/public/vendor/npm/is-array@1.0.1.js +0 -1
  374. data/public/vendor/npm/jstransform@10.1.0/LICENSE +0 -201
  375. data/public/vendor/npm/jstransform@10.1.0/README.md +0 -98
  376. data/public/vendor/npm/jstransform@10.1.0/jestEnvironment.js +0 -3
  377. data/public/vendor/npm/jstransform@10.1.0/jestPreprocessor.js +0 -8
  378. data/public/vendor/npm/jstransform@10.1.0/package.json +0 -52
  379. data/public/vendor/npm/jstransform@10.1.0/polyfill/Object.es6.js +0 -54
  380. data/public/vendor/npm/jstransform@10.1.0/src/__tests__/jstransform-test.js +0 -246
  381. data/public/vendor/npm/jstransform@10.1.0/src/__tests__/jstransform-utils-test.js +0 -31
  382. data/public/vendor/npm/jstransform@10.1.0/src/docblock.js +0 -86
  383. data/public/vendor/npm/jstransform@10.1.0/src/jstransform.js +0 -180
  384. data/public/vendor/npm/jstransform@10.1.0/src/utils.js +0 -386
  385. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-arrow-function-visitors-test.js +0 -57
  386. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-call-spread-visitors-test.js +0 -46
  387. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-class-visitors-test.js +0 -463
  388. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-destructuring-visitors-test.js +0 -144
  389. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-es7-object-integration-test.js +0 -40
  390. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-object-concise-method-visitors-test.js +0 -47
  391. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-object-short-notation-visitors-test.js +0 -33
  392. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-rest-param-visitors-test.js +0 -119
  393. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-template-visitors-test.js +0 -138
  394. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es7-rest-property-helpers-test.js +0 -47
  395. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es7-spread-property-visitors-test.js +0 -90
  396. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/gen/generate-type-syntax-test.js +0 -40
  397. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/gen/type-syntax-test.rec.js +0 -846
  398. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/reserved-words-test.js +0 -40
  399. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-alias-syntax-test.js +0 -34
  400. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-class-syntax-test.js +0 -105
  401. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-function-syntax-test.js +0 -126
  402. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-interface-syntax-test.js +0 -29
  403. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-object-method-syntax-test.js +0 -65
  404. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-pattern-syntax-test.js +0 -45
  405. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-syntax-test.js +0 -46
  406. data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-variable-declaration-syntax-test.js +0 -102
  407. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-arrow-function-visitors.js +0 -66
  408. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-call-spread-visitors.js +0 -72
  409. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-class-visitors.js +0 -316
  410. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-destructuring-visitors.js +0 -135
  411. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-object-concise-method-visitors.js +0 -28
  412. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-object-short-notation-visitors.js +0 -12
  413. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-rest-param-visitors.js +0 -45
  414. data/public/vendor/npm/jstransform@10.1.0/visitors/es6-template-visitors.js +0 -90
  415. data/public/vendor/npm/jstransform@10.1.0/visitors/es7-rest-property-helpers.js +0 -80
  416. data/public/vendor/npm/jstransform@10.1.0/visitors/es7-spread-property-visitors.js +0 -56
  417. data/public/vendor/npm/jstransform@10.1.0/visitors/reserved-words-helper.js +0 -74
  418. data/public/vendor/npm/jstransform@10.1.0/visitors/reserved-words-visitors.js +0 -30
  419. data/public/vendor/npm/jstransform@10.1.0/visitors/type-syntax.js +0 -118
  420. data/public/vendor/npm/jstransform@10.1.0.js +0 -1
  421. data/public/vendor/npm/process@0.10.1/browser.js +0 -58
  422. data/public/vendor/npm/process@0.10.1.js +0 -1
  423. data/public/vendor/npm/qs@2.4.1/test/stringify.js +0 -162
  424. data/public/vendor/npm/react@0.13.3/README.md +0 -20
  425. data/public/vendor/npm/react@0.13.3/addons.js +0 -2
  426. data/public/vendor/npm/react@0.13.3/dist/JSXTransformer.js +0 -11346
  427. data/public/vendor/npm/react@0.13.3/dist/react-with-addons.js +0 -10483
  428. data/public/vendor/npm/react@0.13.3/dist/react-with-addons.min.js +0 -7297
  429. data/public/vendor/npm/react@0.13.3/dist/react.js +0 -9468
  430. data/public/vendor/npm/react@0.13.3/dist/react.min.js +0 -6764
  431. data/public/vendor/npm/react@0.13.3/lib/AutoFocusMixin.js +0 -9
  432. data/public/vendor/npm/react@0.13.3/lib/BeforeInputEventPlugin.js +0 -197
  433. data/public/vendor/npm/react@0.13.3/lib/CSSCore.js +0 -39
  434. data/public/vendor/npm/react@0.13.3/lib/CSSProperty.js +0 -123
  435. data/public/vendor/npm/react@0.13.3/lib/CSSPropertyOperations.js +0 -103
  436. data/public/vendor/npm/react@0.13.3/lib/CallbackQueue.js +0 -43
  437. data/public/vendor/npm/react@0.13.3/lib/ChangeEventPlugin.js +0 -174
  438. data/public/vendor/npm/react@0.13.3/lib/ClientReactRootIndex.js +0 -23
  439. data/public/vendor/npm/react@0.13.3/lib/DOMChildrenOperations.js +0 -57
  440. data/public/vendor/npm/react@0.13.3/lib/DOMProperty.js +0 -96
  441. data/public/vendor/npm/react@0.13.3/lib/DOMPropertyOperations.js +0 -99
  442. data/public/vendor/npm/react@0.13.3/lib/Danger.js +0 -67
  443. data/public/vendor/npm/react@0.13.3/lib/DefaultEventPluginOrder.js +0 -5
  444. data/public/vendor/npm/react@0.13.3/lib/EnterLeaveEventPlugin.js +0 -69
  445. data/public/vendor/npm/react@0.13.3/lib/EventConstants.js +0 -55
  446. data/public/vendor/npm/react@0.13.3/lib/EventListener.js +0 -34
  447. data/public/vendor/npm/react@0.13.3/lib/EventPluginHub.js +0 -103
  448. data/public/vendor/npm/react@0.13.3/lib/EventPluginRegistry.js +0 -115
  449. data/public/vendor/npm/react@0.13.3/lib/EventPluginUtils.js +0 -121
  450. data/public/vendor/npm/react@0.13.3/lib/EventPropagators.js +0 -62
  451. data/public/vendor/npm/react@0.13.3/lib/ExecutionEnvironment.js +0 -42
  452. data/public/vendor/npm/react@0.13.3/lib/FallbackCompositionState.js +0 -45
  453. data/public/vendor/npm/react@0.13.3/lib/HTMLDOMPropertyConfig.js +0 -155
  454. data/public/vendor/npm/react@0.13.3/lib/LinkedStateMixin.js +0 -8
  455. data/public/vendor/npm/react@0.13.3/lib/LinkedValueUtils.js +0 -74
  456. data/public/vendor/npm/react@0.13.3/lib/LocalEventTrapMixin.js +0 -26
  457. data/public/vendor/npm/react@0.13.3/lib/MobileSafariClickEventPlugin.js +0 -17
  458. data/public/vendor/npm/react@0.13.3/lib/Object.assign.js +0 -47
  459. data/public/vendor/npm/react@0.13.3/lib/PooledClass.js +0 -75
  460. data/public/vendor/npm/react@0.13.3/lib/React.js +0 -93
  461. data/public/vendor/npm/react@0.13.3/lib/ReactBrowserComponentMixin.js +0 -7
  462. data/public/vendor/npm/react@0.13.3/lib/ReactBrowserEventEmitter.js +0 -136
  463. data/public/vendor/npm/react@0.13.3/lib/ReactCSSTransitionGroup.js +0 -34
  464. data/public/vendor/npm/react@0.13.3/lib/ReactCSSTransitionGroupChild.js +0 -92
  465. data/public/vendor/npm/react@0.13.3/lib/ReactChildReconciler.js +0 -57
  466. data/public/vendor/npm/react@0.13.3/lib/ReactChildren.js +0 -67
  467. data/public/vendor/npm/react@0.13.3/lib/ReactClass.js +0 -338
  468. data/public/vendor/npm/react@0.13.3/lib/ReactComponent.js +0 -50
  469. data/public/vendor/npm/react@0.13.3/lib/ReactComponentBrowserEnvironment.js +0 -14
  470. data/public/vendor/npm/react@0.13.3/lib/ReactComponentEnvironment.js +0 -19
  471. data/public/vendor/npm/react@0.13.3/lib/ReactComponentWithPureRenderMixin.js +0 -7
  472. data/public/vendor/npm/react@0.13.3/lib/ReactCompositeComponent.js +0 -374
  473. data/public/vendor/npm/react@0.13.3/lib/ReactContext.js +0 -27
  474. data/public/vendor/npm/react@0.13.3/lib/ReactCurrentOwner.js +0 -32
  475. data/public/vendor/npm/react@0.13.3/lib/ReactDOM.js +0 -146
  476. data/public/vendor/npm/react@0.13.3/lib/ReactDOMButton.js +0 -35
  477. data/public/vendor/npm/react@0.13.3/lib/ReactDOMComponent.js +0 -267
  478. data/public/vendor/npm/react@0.13.3/lib/ReactDOMForm.js +0 -21
  479. data/public/vendor/npm/react@0.13.3/lib/ReactDOMIDOperations.js +0 -63
  480. data/public/vendor/npm/react@0.13.3/lib/ReactDOMIframe.js +0 -20
  481. data/public/vendor/npm/react@0.13.3/lib/ReactDOMImg.js +0 -21
  482. data/public/vendor/npm/react@0.13.3/lib/ReactDOMInput.js +0 -94
  483. data/public/vendor/npm/react@0.13.3/lib/ReactDOMOption.js +0 -23
  484. data/public/vendor/npm/react@0.13.3/lib/ReactDOMSelect.js +0 -112
  485. data/public/vendor/npm/react@0.13.3/lib/ReactDOMSelection.js +0 -103
  486. data/public/vendor/npm/react@0.13.3/lib/ReactDOMTextComponent.js +0 -38
  487. data/public/vendor/npm/react@0.13.3/lib/ReactDOMTextarea.js +0 -70
  488. data/public/vendor/npm/react@0.13.3/lib/ReactDefaultBatchingStrategy.js +0 -37
  489. data/public/vendor/npm/react@0.13.3/lib/ReactDefaultInjection.js +0 -93
  490. data/public/vendor/npm/react@0.13.3/lib/ReactDefaultPerf.js +0 -183
  491. data/public/vendor/npm/react@0.13.3/lib/ReactDefaultPerfAnalysis.js +0 -145
  492. data/public/vendor/npm/react@0.13.3/lib/ReactElement.js +0 -151
  493. data/public/vendor/npm/react@0.13.3/lib/ReactElementValidator.js +0 -218
  494. data/public/vendor/npm/react@0.13.3/lib/ReactEmptyComponent.js +0 -47
  495. data/public/vendor/npm/react@0.13.3/lib/ReactErrorUtils.js +0 -30
  496. data/public/vendor/npm/react@0.13.3/lib/ReactEventEmitterMixin.js +0 -12
  497. data/public/vendor/npm/react@0.13.3/lib/ReactEventListener.js +0 -93
  498. data/public/vendor/npm/react@0.13.3/lib/ReactFragment.js +0 -110
  499. data/public/vendor/npm/react@0.13.3/lib/ReactInjection.js +0 -27
  500. data/public/vendor/npm/react@0.13.3/lib/ReactInputSelection.js +0 -75
  501. data/public/vendor/npm/react@0.13.3/lib/ReactInstanceHandles.js +0 -113
  502. data/public/vendor/npm/react@0.13.3/lib/ReactInstanceMap.js +0 -47
  503. data/public/vendor/npm/react@0.13.3/lib/ReactLifeCycle.js +0 -9
  504. data/public/vendor/npm/react@0.13.3/lib/ReactLink.js +0 -16
  505. data/public/vendor/npm/react@0.13.3/lib/ReactMarkupChecksum.js +0 -17
  506. data/public/vendor/npm/react@0.13.3/lib/ReactMount.js +0 -347
  507. data/public/vendor/npm/react@0.13.3/lib/ReactMultiChild.js +0 -190
  508. data/public/vendor/npm/react@0.13.3/lib/ReactMultiChildUpdateTypes.js +0 -10
  509. data/public/vendor/npm/react@0.13.3/lib/ReactNativeComponent.js +0 -53
  510. data/public/vendor/npm/react@0.13.3/lib/ReactOwner.js +0 -21
  511. data/public/vendor/npm/react@0.13.3/lib/ReactPerf.js +0 -42
  512. data/public/vendor/npm/react@0.13.3/lib/ReactPropTransferer.js +0 -40
  513. data/public/vendor/npm/react@0.13.3/lib/ReactPropTypeLocationNames.js +0 -13
  514. data/public/vendor/npm/react@0.13.3/lib/ReactPropTypeLocations.js +0 -9
  515. data/public/vendor/npm/react@0.13.3/lib/ReactPropTypes.js +0 -225
  516. data/public/vendor/npm/react@0.13.3/lib/ReactPutListenerQueue.js +0 -31
  517. data/public/vendor/npm/react@0.13.3/lib/ReactReconcileTransaction.js +0 -66
  518. data/public/vendor/npm/react@0.13.3/lib/ReactReconciler.js +0 -44
  519. data/public/vendor/npm/react@0.13.3/lib/ReactRef.js +0 -36
  520. data/public/vendor/npm/react@0.13.3/lib/ReactRootIndex.js +0 -29
  521. data/public/vendor/npm/react@0.13.3/lib/ReactServerRendering.js +0 -44
  522. data/public/vendor/npm/react@0.13.3/lib/ReactServerRenderingTransaction.js +0 -47
  523. data/public/vendor/npm/react@0.13.3/lib/ReactStateSetters.js +0 -104
  524. data/public/vendor/npm/react@0.13.3/lib/ReactTestUtils.js +0 -249
  525. data/public/vendor/npm/react@0.13.3/lib/ReactTransitionChildMapping.js +0 -53
  526. data/public/vendor/npm/react@0.13.3/lib/ReactTransitionEvents.js +0 -68
  527. data/public/vendor/npm/react@0.13.3/lib/ReactTransitionGroup.js +0 -140
  528. data/public/vendor/npm/react@0.13.3/lib/ReactUpdateQueue.js +0 -107
  529. data/public/vendor/npm/react@0.13.3/lib/ReactUpdates.js +0 -139
  530. data/public/vendor/npm/react@0.13.3/lib/ReactWithAddons.js +0 -30
  531. data/public/vendor/npm/react@0.13.3/lib/SVGDOMPropertyConfig.js +0 -76
  532. data/public/vendor/npm/react@0.13.3/lib/SelectEventPlugin.js +0 -91
  533. data/public/vendor/npm/react@0.13.3/lib/ServerReactRootIndex.js +0 -29
  534. data/public/vendor/npm/react@0.13.3/lib/SimpleEventPlugin.js +0 -287
  535. data/public/vendor/npm/react@0.13.3/lib/SyntheticClipboardEvent.js +0 -11
  536. data/public/vendor/npm/react@0.13.3/lib/SyntheticCompositionEvent.js +0 -9
  537. data/public/vendor/npm/react@0.13.3/lib/SyntheticDragEvent.js +0 -9
  538. data/public/vendor/npm/react@0.13.3/lib/SyntheticEvent.js +0 -90
  539. data/public/vendor/npm/react@0.13.3/lib/SyntheticFocusEvent.js +0 -9
  540. data/public/vendor/npm/react@0.13.3/lib/SyntheticInputEvent.js +0 -9
  541. data/public/vendor/npm/react@0.13.3/lib/SyntheticKeyboardEvent.js +0 -43
  542. data/public/vendor/npm/react@0.13.3/lib/SyntheticMouseEvent.js +0 -38
  543. data/public/vendor/npm/react@0.13.3/lib/SyntheticTouchEvent.js +0 -19
  544. data/public/vendor/npm/react@0.13.3/lib/SyntheticUIEvent.js +0 -29
  545. data/public/vendor/npm/react@0.13.3/lib/SyntheticWheelEvent.js +0 -18
  546. data/public/vendor/npm/react@0.13.3/lib/Transaction.js +0 -90
  547. data/public/vendor/npm/react@0.13.3/lib/ViewportMetrics.js +0 -27
  548. data/public/vendor/npm/react@0.13.3/lib/accumulateInto.js +0 -26
  549. data/public/vendor/npm/react@0.13.3/lib/adler32.js +0 -32
  550. data/public/vendor/npm/react@0.13.3/lib/camelize.js +0 -30
  551. data/public/vendor/npm/react@0.13.3/lib/camelizeStyleName.js +0 -8
  552. data/public/vendor/npm/react@0.13.3/lib/cloneWithProps.js +0 -20
  553. data/public/vendor/npm/react@0.13.3/lib/containsNode.js +0 -20
  554. data/public/vendor/npm/react@0.13.3/lib/createArrayFromMixed.js +0 -15
  555. data/public/vendor/npm/react@0.13.3/lib/createFullPageComponent.js +0 -22
  556. data/public/vendor/npm/react@0.13.3/lib/createNodesFromMarkup.js +0 -39
  557. data/public/vendor/npm/react@0.13.3/lib/cx.js +0 -20
  558. data/public/vendor/npm/react@0.13.3/lib/dangerousStyleValue.js +0 -19
  559. data/public/vendor/npm/react@0.13.3/lib/emptyFunction.js +0 -32
  560. data/public/vendor/npm/react@0.13.3/lib/emptyObject.js +0 -9
  561. data/public/vendor/npm/react@0.13.3/lib/escapeTextContentForBrowser.js +0 -38
  562. data/public/vendor/npm/react@0.13.3/lib/findDOMNode.js +0 -31
  563. data/public/vendor/npm/react@0.13.3/lib/flattenChildren.js +0 -25
  564. data/public/vendor/npm/react@0.13.3/lib/focusNode.js +0 -27
  565. data/public/vendor/npm/react@0.13.3/lib/forEachAccumulated.js +0 -29
  566. data/public/vendor/npm/react@0.13.3/lib/getActiveElement.js +0 -27
  567. data/public/vendor/npm/react@0.13.3/lib/getEventCharCode.js +0 -50
  568. data/public/vendor/npm/react@0.13.3/lib/getEventKey.js +0 -72
  569. data/public/vendor/npm/react@0.13.3/lib/getEventModifierState.js +0 -45
  570. data/public/vendor/npm/react@0.13.3/lib/getEventTarget.js +0 -29
  571. data/public/vendor/npm/react@0.13.3/lib/getIteratorFn.js +0 -42
  572. data/public/vendor/npm/react@0.13.3/lib/getMarkupWrap.js +0 -73
  573. data/public/vendor/npm/react@0.13.3/lib/getNodeForCharacterOffset.js +0 -73
  574. data/public/vendor/npm/react@0.13.3/lib/getReactRootElementInContainer.js +0 -33
  575. data/public/vendor/npm/react@0.13.3/lib/getTextContentAccessor.js +0 -11
  576. data/public/vendor/npm/react@0.13.3/lib/getUnboundedScrollPosition.js +0 -38
  577. data/public/vendor/npm/react@0.13.3/lib/hyphenate.js +0 -31
  578. data/public/vendor/npm/react@0.13.3/lib/hyphenateStyleName.js +0 -8
  579. data/public/vendor/npm/react@0.13.3/lib/instantiateReactComponent.js +0 -55
  580. data/public/vendor/npm/react@0.13.3/lib/invariant.js +0 -26
  581. data/public/vendor/npm/react@0.13.3/lib/isEventSupported.js +0 -24
  582. data/public/vendor/npm/react@0.13.3/lib/isNode.js +0 -25
  583. data/public/vendor/npm/react@0.13.3/lib/isTextInputElement.js +0 -41
  584. data/public/vendor/npm/react@0.13.3/lib/isTextNode.js +0 -6
  585. data/public/vendor/npm/react@0.13.3/lib/joinClasses.js +0 -39
  586. data/public/vendor/npm/react@0.13.3/lib/keyMirror.js +0 -18
  587. data/public/vendor/npm/react@0.13.3/lib/keyOf.js +0 -34
  588. data/public/vendor/npm/react@0.13.3/lib/mapObject.js +0 -51
  589. data/public/vendor/npm/react@0.13.3/lib/memoizeStringOnly.js +0 -31
  590. data/public/vendor/npm/react@0.13.3/lib/onlyChild.js +0 -11
  591. data/public/vendor/npm/react@0.13.3/lib/performance.js +0 -8
  592. data/public/vendor/npm/react@0.13.3/lib/performanceNow.js +0 -7
  593. data/public/vendor/npm/react@0.13.3/lib/quoteAttributeValueForBrowser.js +0 -7
  594. data/public/vendor/npm/react@0.13.3/lib/setInnerHTML.js +0 -40
  595. data/public/vendor/npm/react@0.13.3/lib/setTextContent.js +0 -16
  596. data/public/vendor/npm/react@0.13.3/lib/shallowEqual.js +0 -42
  597. data/public/vendor/npm/react@0.13.3/lib/shouldUpdateReactComponent.js +0 -51
  598. data/public/vendor/npm/react@0.13.3/lib/toArray.js +0 -21
  599. data/public/vendor/npm/react@0.13.3/lib/traverseAllChildren.js +0 -104
  600. data/public/vendor/npm/react@0.13.3/lib/update.js +0 -78
  601. data/public/vendor/npm/react@0.13.3/lib/warning.js +0 -34
  602. data/public/vendor/npm/react@0.13.3/package.json +0 -34
  603. data/public/vendor/npm/react@0.13.3/react.js +0 -2
  604. data/public/vendor/npm/react@0.13.3.js +0 -1
  605. data/public/vendor/npm/readable-stream@1.1.13/duplex.js +0 -2
  606. data/public/vendor/npm/readable-stream@1.1.13/passthrough.js +0 -2
  607. data/public/vendor/npm/readable-stream@1.1.13/readable.js +0 -8
  608. data/public/vendor/npm/readable-stream@1.1.13/transform.js +0 -2
  609. data/public/vendor/npm/readable-stream@1.1.13/writable.js +0 -2
  610. data/public/vendor/npm/readable-stream@1.1.13.js +0 -1
  611. data/public/vendor/npm/source-map@0.1.31/CHANGELOG.md +0 -112
  612. data/public/vendor/npm/source-map@0.1.31/LICENSE +0 -28
  613. data/public/vendor/npm/source-map@0.1.31/Makefile.dryice.js +0 -89
  614. data/public/vendor/npm/source-map@0.1.31/README.md +0 -434
  615. data/public/vendor/npm/source-map@0.1.31/build/assert-shim.js +0 -58
  616. data/public/vendor/npm/source-map@0.1.31/build/mini-require.js +0 -154
  617. data/public/vendor/npm/source-map@0.1.31/build/prefix-source-map.jsm +0 -20
  618. data/public/vendor/npm/source-map@0.1.31/build/prefix-utils.jsm +0 -18
  619. data/public/vendor/npm/source-map@0.1.31/build/suffix-browser.js +0 -8
  620. data/public/vendor/npm/source-map@0.1.31/build/suffix-source-map.jsm +0 -6
  621. data/public/vendor/npm/source-map@0.1.31/build/suffix-utils.jsm +0 -21
  622. data/public/vendor/npm/source-map@0.1.31/build/test-prefix.js +0 -10
  623. data/public/vendor/npm/source-map@0.1.31/build/test-suffix.js +0 -5
  624. data/public/vendor/npm/source-map@0.1.31/lib/source-map/array-set.js +0 -49
  625. data/public/vendor/npm/source-map@0.1.31/lib/source-map/base64-vlq.js +0 -56
  626. data/public/vendor/npm/source-map@0.1.31/lib/source-map/base64.js +0 -44
  627. data/public/vendor/npm/source-map@0.1.31/lib/source-map/binary-search.js +0 -83
  628. data/public/vendor/npm/source-map@0.1.31/lib/source-map/source-map-consumer.js +0 -238
  629. data/public/vendor/npm/source-map@0.1.31/lib/source-map/source-map-generator.js +0 -231
  630. data/public/vendor/npm/source-map@0.1.31/lib/source-map/source-node.js +0 -234
  631. data/public/vendor/npm/source-map@0.1.31/lib/source-map/util.js +0 -207
  632. data/public/vendor/npm/source-map@0.1.31/lib/source-map.js +0 -4
  633. data/public/vendor/npm/source-map@0.1.31/package.json +0 -52
  634. data/public/vendor/npm/source-map@0.1.31/test/run-tests.js +0 -50
  635. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-api.js +0 -19
  636. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-array-set.js +0 -84
  637. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-base64-vlq.js +0 -17
  638. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-base64.js +0 -26
  639. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-binary-search.js +0 -37
  640. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-dog-fooding.js +0 -76
  641. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-consumer.js +0 -426
  642. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-generator.js +0 -480
  643. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-node.js +0 -307
  644. data/public/vendor/npm/source-map@0.1.31/test/source-map/util.js +0 -84
  645. data/public/vendor/npm/source-map@0.1.31.js +0 -1
  646. data/public/vendor/npm/through@2.3.8/LICENSE.APACHE2 +0 -15
  647. data/public/vendor/npm/through@2.3.8/LICENSE.MIT +0 -24
  648. data/public/vendor/npm/through@2.3.8/index.js +0 -93
  649. data/public/vendor/npm/through@2.3.8/package.json +0 -36
  650. data/public/vendor/npm/through@2.3.8/readme.markdown +0 -64
  651. data/public/vendor/npm/through@2.3.8/test/async.js +0 -26
  652. data/public/vendor/npm/through@2.3.8/test/auto-destroy.js +0 -26
  653. data/public/vendor/npm/through@2.3.8/test/buffering.js +0 -57
  654. data/public/vendor/npm/through@2.3.8/test/end.js +0 -37
  655. data/public/vendor/npm/through@2.3.8/test/index.js +0 -98
  656. data/public/vendor/npm/through@2.3.8/test.js +0 -2
  657. data/public/vendor/npm/through@2.3.8.js +0 -1
  658. data/views/_options.erb +0 -156
  659. /data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-buffer@0.1.1}/index.js +0 -0
  660. /data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/index.js +0 -0
  661. /data/public/vendor/npm/{readable-stream@1.1.13 → assert@1.5.0}/LICENSE +0 -0
  662. /data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/LICENSE +0 -0
  663. /data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/README.md +0 -0
  664. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/LICENSE +0 -0
  665. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/index.js +0 -0
  666. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/README.md +0 -0
  667. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/float.patch +0 -0
@@ -1,54 +0,0 @@
1
- /* */
2
- "format cjs";
3
- /**
4
- * Copyright 2014 Facebook, Inc.
5
- *
6
- * Licensed under the Apache License, Version 2.0 (the "License");
7
- * you may not use this file except in compliance with the License.
8
- * You may obtain a copy of the License at
9
- *
10
- * http://www.apache.org/licenses/LICENSE-2.0
11
- *
12
- * Unless required by applicable law or agreed to in writing, software
13
- * distributed under the License is distributed on an "AS IS" BASIS,
14
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15
- * See the License for the specific language governing permissions and
16
- * limitations under the License.
17
- *
18
- * @provides Object.es6
19
- * @polyfill
20
- */
21
-
22
- // https://people.mozilla.org/~jorendorff/es6-draft.html#sec-object.assign
23
-
24
- if (!Object.assign) {
25
- Object.assign = function(target, sources) {
26
- if (target === null || target === undefined) {
27
- throw new TypeError('Object.assign target cannot be null or undefined');
28
- }
29
-
30
- var to = Object(target);
31
- var hasOwnProperty = Object.prototype.hasOwnProperty;
32
-
33
- for (var nextIndex = 1; nextIndex < arguments.length; nextIndex++) {
34
- var nextSource = arguments[nextIndex];
35
- if (nextSource === null || nextSource === undefined) {
36
- continue;
37
- }
38
-
39
- var from = Object(nextSource);
40
-
41
- // We don't currently support accessors nor proxies. Therefore this
42
- // copy cannot throw. If we ever supported this then we must handle
43
- // exceptions and side-effects.
44
-
45
- for (var key in from) {
46
- if (hasOwnProperty.call(from, key)) {
47
- to[key] = from[key];
48
- }
49
- }
50
- }
51
-
52
- return to;
53
- };
54
- }
@@ -1,246 +0,0 @@
1
- /* */
2
- require("mock-modules").autoMockOff();
3
- describe('jstransform', function() {
4
- var transformFn;
5
- var Syntax = require("esprima-fb").Syntax;
6
- beforeEach(function() {
7
- require("mock-modules").dumpCache();
8
- transformFn = require("../jstransform").transform;
9
- });
10
- function _runVisitor(source, nodeCount, visitor) {
11
- var actualVisitationCount = 0;
12
- function shimVisitor(traverse, node, path, state) {
13
- actualVisitationCount++;
14
- return visitor(traverse, node, path, state);
15
- }
16
- shimVisitor.test = visitor.test;
17
- transformFn([shimVisitor], source);
18
- expect(actualVisitationCount).toBe(nodeCount);
19
- }
20
- function testScopeBoundary(source, localIdents, nodeCount, visitorTest) {
21
- function visitor(traverse, node, path, state) {
22
- var actualLocalIdents = Object.keys(state.localScope.identifiers);
23
- expect(actualLocalIdents.sort()).toEqual(localIdents.sort());
24
- }
25
- visitor.test = visitorTest;
26
- _runVisitor(source, nodeCount, visitor);
27
- }
28
- function testParentScope(source, parentIdents, nodeCount, visitorTest) {
29
- function visitor(traverse, node, path, state) {
30
- parentIdents = parentIdents && parentIdents.sort();
31
- var parentScope = state.localScope.parentScope;
32
- var actualParentIdents = parentScope && Object.keys(parentScope.identifiers).sort();
33
- expect(actualParentIdents).toEqual(parentIdents);
34
- }
35
- visitor.test = visitorTest;
36
- _runVisitor(source, nodeCount, visitor);
37
- }
38
- describe('closure scope boundaries', function() {
39
- it('creates a scope boundary around Program scope', function() {
40
- var source = 'var foo;' + 'var bar, baz;' + 'function blah() {}';
41
- var idents = ['foo', 'bar', 'baz', 'blah'];
42
- testScopeBoundary(source, idents, 3, function(node, path) {
43
- return path[0] && path[0].type === Syntax.Program;
44
- });
45
- });
46
- it('creates a scope boundary around FunctionDeclarations', function() {
47
- var source = 'var foo;' + 'function blah() {' + ' var bar;' + ' function nested() {' + ' var baz;' + ' }' + '}';
48
- var programIdents = ['foo', 'blah'];
49
- var blahIdents = ['arguments', 'bar', 'nested'];
50
- var nestedIdents = ['arguments', 'baz'];
51
- testScopeBoundary(source, programIdents, 2, function(node, path) {
52
- return path[0] && path[0].type === Syntax.Program;
53
- });
54
- testScopeBoundary(source, blahIdents, 2, function(node, path) {
55
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'blah';
56
- });
57
- testScopeBoundary(source, nestedIdents, 1, function(node, path) {
58
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'nested';
59
- });
60
- });
61
- it('creates a scope boundary around MethodDefinitions', function() {
62
- var source = 'var foo;' + 'class ClassA {' + ' blah() {' + ' var bar;' + ' }' + ' another() {' + ' var baz;' + ' }' + '}';
63
- var programIdents = ['foo', 'ClassA'];
64
- var blahIdents = ['arguments', 'bar'];
65
- var anotherIdents = ['arguments', 'baz'];
66
- testScopeBoundary(source, programIdents, 2, function(node, path) {
67
- return path[0] && path[0].type === Syntax.Program;
68
- });
69
- testScopeBoundary(source, blahIdents, 1, function(node, path) {
70
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionExpression && path[2] && path[2].type === Syntax.MethodDefinition && path[2].key.name === 'blah';
71
- });
72
- testScopeBoundary(source, anotherIdents, 1, function(node, path) {
73
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionExpression && path[2] && path[2].type === Syntax.MethodDefinition && path[2].key.name === 'another';
74
- });
75
- });
76
- it('creates a scope boundary around concise ArrowFunc exprs', function() {
77
- var source = 'var foo;' + 'var bar = baz => baz;';
78
- var programIdents = ['foo', 'bar'];
79
- var barIdents = ['arguments', 'baz'];
80
- testScopeBoundary(source, programIdents, 2, function(node, path) {
81
- return path[0] && path[0].type === Syntax.Program;
82
- });
83
- testScopeBoundary(source, barIdents, 1, function(node, path) {
84
- return path[0] && path[0].type === Syntax.ArrowFunctionExpression && path[0].body === node;
85
- });
86
- });
87
- it('uses VariableDeclarations to determine scope boundary', function() {
88
- var source = 'var foo = 1;' + 'function bar() {' + ' foo++;' + ' function baz() {' + ' var foo = 2;' + ' }' + '}';
89
- var programIdents = ['foo', 'bar'];
90
- var barIdents = ['arguments', 'baz'];
91
- var bazIdents = ['arguments', 'foo'];
92
- testScopeBoundary(source, programIdents, 2, function(node, path) {
93
- return path[0] && path[0].type === Syntax.Program;
94
- });
95
- testScopeBoundary(source, barIdents, 2, function(node, path) {
96
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'bar';
97
- });
98
- testScopeBoundary(source, bazIdents, 1, function(node, path) {
99
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'baz';
100
- });
101
- });
102
- it('includes function args in functions scope boundary', function() {
103
- var source = 'var foo;' + 'function blah(bar) {' + ' var baz;' + '}' + 'var blah2 = bar2 => {var baz;};' + 'var blah3 = bar3 => bar3;';
104
- var programIdents = ['foo', 'blah', 'blah2', 'blah3'];
105
- var blahIdents = ['arguments', 'bar', 'baz'];
106
- var blah2Idents = ['arguments', 'bar2', 'baz'];
107
- var blah3Idents = ['arguments', 'bar3'];
108
- testScopeBoundary(source, programIdents, 4, function(node, path) {
109
- return path[0] && path[0].type === Syntax.Program;
110
- });
111
- testScopeBoundary(source, blahIdents, 1, function(node, path) {
112
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'blah';
113
- });
114
- testScopeBoundary(source, blah2Idents, 1, function(node, path) {
115
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.ArrowFunctionExpression && path[2].id.name === 'blah2';
116
- });
117
- testScopeBoundary(source, blah3Idents, 1, function(node, path) {
118
- return path[0] && path[0].type === Syntax.ArrowFunctionExpression && path[0].body === node && path[1].id.name === 'blah3';
119
- });
120
- });
121
- it('includes rest param args in function scope boundaries', function() {
122
- var source = 'var foo;' + 'function blah(...bar) {' + ' var baz;' + '}' + 'var blah2 = (...bar2) => {var baz;};' + 'var blah3 = (...bar3) => bar3;';
123
- var programIdents = ['foo', 'blah', 'blah2', 'blah3'];
124
- var blahIdents = ['arguments', 'bar', 'baz'];
125
- var blah2Idents = ['arguments', 'bar2', 'baz'];
126
- var blah3Idents = ['arguments', 'bar3'];
127
- testScopeBoundary(source, programIdents, 4, function(node, path) {
128
- return path[0] && path[0].type === Syntax.Program;
129
- });
130
- testScopeBoundary(source, blahIdents, 1, function(node, path) {
131
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'blah';
132
- });
133
- testScopeBoundary(source, blah2Idents, 1, function(node, path) {
134
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.ArrowFunctionExpression && path[2].id.name === 'blah2';
135
- });
136
- testScopeBoundary(source, blah3Idents, 1, function(node, path) {
137
- return path[0] && path[0].type === Syntax.ArrowFunctionExpression && path[0].body === node && path[1].id.name === 'blah3';
138
- });
139
- });
140
- it('puts FunctionExpression names within function scope', function() {
141
- var source = 'var foo;' + 'var bar = function baz() {' + ' var blah;' + '};';
142
- var programIdents = ['foo', 'bar'];
143
- var bazIdents = ['arguments', 'baz', 'blah'];
144
- testScopeBoundary(source, programIdents, 2, function(node, path) {
145
- return path[0] && path[0].type === Syntax.Program;
146
- });
147
- testScopeBoundary(source, bazIdents, 1, function(node, path) {
148
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionExpression && path[1].id.name === 'baz';
149
- });
150
- });
151
- });
152
- describe('block scope boundaries', function() {
153
- it('creates a scope boundary around CatchClauses with params', function() {
154
- var source = 'var blah = 0;' + 'try {' + '} catch (e) {' + ' blah++;' + '}';
155
- var programIdents = ['blah'];
156
- var catchIdents = ['e'];
157
- testScopeBoundary(source, programIdents, 2, function(node, path) {
158
- return path[0] && path[0].type === Syntax.Program;
159
- });
160
- testScopeBoundary(source, catchIdents, 1, function(node, path) {
161
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.CatchClause;
162
- });
163
- });
164
- it('includes vars defined in CatchClauses in the parent scope', function() {
165
- var source = 'try {' + '} catch (e) {' + ' var blah;' + '}';
166
- var programIdents = ['blah'];
167
- var catchIdents = ['e'];
168
- testScopeBoundary(source, programIdents, 1, function(node, path) {
169
- return path[0] && path[0].type === Syntax.Program;
170
- });
171
- testScopeBoundary(source, catchIdents, 1, function(node, path) {
172
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.CatchClause;
173
- });
174
- });
175
- });
176
- describe('scope chain linking', function() {
177
- it('links parent scope boundaries', function() {
178
- var source = 'var foo;' + 'function blah() {' + ' var bar;' + ' function nested() {' + ' var baz;' + ' }' + '}';
179
- var programIdents = ['foo', 'blah'];
180
- var blahIdents = ['arguments', 'bar', 'nested'];
181
- testParentScope(source, programIdents, 2, function(node, path) {
182
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'blah';
183
- });
184
- testParentScope(source, blahIdents, 1, function(node, path) {
185
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionDeclaration && path[1].id.name === 'nested';
186
- });
187
- });
188
- it('nests MethodDefinition boundaries under parent scope', function() {
189
- var source = 'var foo;' + 'class ClassA {' + ' blah() {' + ' var bar;' + ' }' + '}';
190
- var programIdents = ['foo', 'ClassA'];
191
- testParentScope(source, programIdents, 1, function(node, path) {
192
- return path[0] && path[0].type === Syntax.BlockStatement && path[1] && path[1].type === Syntax.FunctionExpression && path[2] && path[2].type === Syntax.MethodDefinition && path[2].key.name === 'blah';
193
- });
194
- });
195
- });
196
- describe('"use strict" tracking', function() {
197
- function testStrictness(expectedStrict, source) {
198
- var visitedNodes = 0;
199
- function visitor(traverse, node, path, state) {
200
- visitedNodes++;
201
- expect(state.scopeIsStrict).toBe(expectedStrict);
202
- }
203
- visitor.test = function(node, path, state) {
204
- return node.type === Syntax.Literal && node.value === 'testStr';
205
- };
206
- transformFn([visitor], source);
207
- expect(visitedNodes).toBe(1);
208
- }
209
- it('detects program-level strictness', function() {
210
- testStrictness(false, '"testStr";');
211
- testStrictness(true, '"use strict"; "testStr";');
212
- });
213
- it('detects non-inherited strictness', function() {
214
- testStrictness(true, ['function foo() {', ' "use strict";', ' "testStr";', '}'].join('\n'));
215
- });
216
- it('detects program-inherited strictness', function() {
217
- testStrictness(true, ['"use strict";', 'function foo() {', ' "testStr";', '}'].join('\n'));
218
- });
219
- it('detects function-inherited strictness', function() {
220
- testStrictness(true, ['function foo() {', ' "use strict";', ' function bar() {', ' "testStr";', ' }', '}'].join('\n'));
221
- });
222
- it('does not detect sibling strictness', function() {
223
- testStrictness(false, ['function foo() {', ' "use strict";', '}', 'function bar() {', ' "testStr";', '}'].join('\n'));
224
- });
225
- });
226
- describe('visitors', function() {
227
- it('should visit nodes in order', function() {
228
- var source = ['// Foo comment', 'function foo() {}', '', '// Bar comment', 'function bar() {}'].join('\n');
229
- var actualNodes = [];
230
- function visitFunction(traverse, node, path, state) {
231
- actualNodes.push([node.id.name, node.range[0]]);
232
- }
233
- visitFunction.test = function(node, path, state) {
234
- return node.type === Syntax.FunctionDeclaration;
235
- };
236
- function visitComments(traverse, node, path, state) {
237
- actualNodes.push([node.value, node.range[0]]);
238
- }
239
- visitComments.test = function(node, path, state) {
240
- return node.type === 'Line';
241
- };
242
- transformFn([visitComments, visitFunction], source);
243
- expect(actualNodes).toEqual([[' Foo comment', 0], ['foo', 15], [' Bar comment', 34], ['bar', 49]]);
244
- });
245
- });
246
- });
@@ -1,31 +0,0 @@
1
- /* */
2
- require("mock-modules").autoMockOff();
3
- describe('jstransform-utils', function() {
4
- var transform,
5
- utils;
6
- var Syntax = require("esprima-fb").Syntax;
7
- beforeEach(function() {
8
- require("mock-modules").dumpCache();
9
- transform = require("../jstransform").transform;
10
- utils = require("../utils");
11
- });
12
- describe('temporary variables', function() {
13
- it('should inject temporary variables at the start of functions', function() {
14
- function visitFunctionBlock(traverse, node, path, state) {
15
- utils.catchup(node.range[0] + 1, state);
16
- var x = utils.injectTempVar(state);
17
- var y = utils.injectTempVar(state);
18
- traverse(node.body, path, state);
19
- utils.append('return ' + x + ' + ' + y + ';', state);
20
- utils.catchup(node.range[1], state);
21
- return false;
22
- }
23
- visitFunctionBlock.test = function(node, path, state) {
24
- var parentType = path.length && path[0].type;
25
- return node.type === Syntax.BlockStatement && (parentType === Syntax.FunctionDeclaration || parentType === Syntax.FunctionExpression);
26
- };
27
- expect(transform([visitFunctionBlock], 'var x = function() {};').code).toEqual('var x = function() {var $__0, $__1;return $__0 + $__1;};');
28
- expect(eval(transform([visitFunctionBlock], '2 + (function sum(x, y)\t{ $__0 = x; $__1 = y; }(3, 5))').code)).toEqual(10);
29
- });
30
- });
31
- });
@@ -1,86 +0,0 @@
1
- /**
2
- * Copyright 2013 Facebook, Inc.
3
- *
4
- * Licensed under the Apache License, Version 2.0 (the "License");
5
- * you may not use this file except in compliance with the License.
6
- * You may obtain a copy of the License at
7
- *
8
- * http://www.apache.org/licenses/LICENSE-2.0
9
- *
10
- * Unless required by applicable law or agreed to in writing, software
11
- * distributed under the License is distributed on an "AS IS" BASIS,
12
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13
- * See the License for the specific language governing permissions and
14
- * limitations under the License.
15
- */
16
-
17
- var docblockRe = /^\s*(\/\*\*(.|\r?\n)*?\*\/)/;
18
- var ltrimRe = /^\s*/;
19
- /**
20
- * @param {String} contents
21
- * @return {String}
22
- */
23
- function extract(contents) {
24
- var match = contents.match(docblockRe);
25
- if (match) {
26
- return match[0].replace(ltrimRe, '') || '';
27
- }
28
- return '';
29
- }
30
-
31
-
32
- var commentStartRe = /^\/\*\*?/;
33
- var commentEndRe = /\*+\/$/;
34
- var wsRe = /[\t ]+/g;
35
- var stringStartRe = /(\r?\n|^) *\*/g;
36
- var multilineRe = /(?:^|\r?\n) *(@[^\r\n]*?) *\r?\n *([^@\r\n\s][^@\r\n]+?) *\r?\n/g;
37
- var propertyRe = /(?:^|\r?\n) *@(\S+) *([^\r\n]*)/g;
38
-
39
- /**
40
- * @param {String} contents
41
- * @return {Array}
42
- */
43
- function parse(docblock) {
44
- docblock = docblock
45
- .replace(commentStartRe, '')
46
- .replace(commentEndRe, '')
47
- .replace(wsRe, ' ')
48
- .replace(stringStartRe, '$1');
49
-
50
- // Normalize multi-line directives
51
- var prev = '';
52
- while (prev != docblock) {
53
- prev = docblock;
54
- docblock = docblock.replace(multilineRe, "\n$1 $2\n");
55
- }
56
- docblock = docblock.trim();
57
-
58
- var result = [];
59
- var match;
60
- while (match = propertyRe.exec(docblock)) {
61
- result.push([match[1], match[2]]);
62
- }
63
-
64
- return result;
65
- }
66
-
67
- /**
68
- * Same as parse but returns an object of prop: value instead of array of paris
69
- * If a property appers more than once the last one will be returned
70
- *
71
- * @param {String} contents
72
- * @return {Object}
73
- */
74
- function parseAsObject(docblock) {
75
- var pairs = parse(docblock);
76
- var result = {};
77
- for (var i = 0; i < pairs.length; i++) {
78
- result[pairs[i][0]] = pairs[i][1];
79
- }
80
- return result;
81
- }
82
-
83
-
84
- exports.extract = extract;
85
- exports.parse = parse;
86
- exports.parseAsObject = parseAsObject;
@@ -1,180 +0,0 @@
1
- /* */
2
- "use strict";
3
- var esprima = require("esprima-fb");
4
- var utils = require("./utils");
5
- var getBoundaryNode = utils.getBoundaryNode;
6
- var declareIdentInScope = utils.declareIdentInLocalScope;
7
- var initScopeMetadata = utils.initScopeMetadata;
8
- var Syntax = esprima.Syntax;
9
- function _nodeIsClosureScopeBoundary(node, parentNode) {
10
- if (node.type === Syntax.Program) {
11
- return true;
12
- }
13
- var parentIsFunction = parentNode.type === Syntax.FunctionDeclaration || parentNode.type === Syntax.FunctionExpression || parentNode.type === Syntax.ArrowFunctionExpression;
14
- var parentIsCurlylessArrowFunc = parentNode.type === Syntax.ArrowFunctionExpression && node === parentNode.body;
15
- return parentIsFunction && (node.type === Syntax.BlockStatement || parentIsCurlylessArrowFunc);
16
- }
17
- function _nodeIsBlockScopeBoundary(node, parentNode) {
18
- if (node.type === Syntax.Program) {
19
- return false;
20
- }
21
- return node.type === Syntax.BlockStatement && parentNode.type === Syntax.CatchClause;
22
- }
23
- function traverse(node, path, state) {
24
- var startIndex = null;
25
- var parentNode = path[0];
26
- if (!Array.isArray(node) && state.localScope.parentNode !== parentNode) {
27
- if (_nodeIsClosureScopeBoundary(node, parentNode)) {
28
- var scopeIsStrict = state.scopeIsStrict;
29
- if (!scopeIsStrict && (node.type === Syntax.BlockStatement || node.type === Syntax.Program)) {
30
- scopeIsStrict = node.body.length > 0 && node.body[0].type === Syntax.ExpressionStatement && node.body[0].expression.type === Syntax.Literal && node.body[0].expression.value === 'use strict';
31
- }
32
- if (node.type === Syntax.Program) {
33
- startIndex = state.g.buffer.length;
34
- state = utils.updateState(state, {scopeIsStrict: scopeIsStrict});
35
- } else {
36
- startIndex = state.g.buffer.length + 1;
37
- state = utils.updateState(state, {
38
- localScope: {
39
- parentNode: parentNode,
40
- parentScope: state.localScope,
41
- identifiers: {},
42
- tempVarIndex: 0,
43
- tempVars: []
44
- },
45
- scopeIsStrict: scopeIsStrict
46
- });
47
- declareIdentInScope('arguments', initScopeMetadata(node), state);
48
- if (parentNode.params.length > 0) {
49
- var param;
50
- var metadata = initScopeMetadata(parentNode, path.slice(1), path[0]);
51
- for (var i = 0; i < parentNode.params.length; i++) {
52
- param = parentNode.params[i];
53
- if (param.type === Syntax.Identifier) {
54
- declareIdentInScope(param.name, metadata, state);
55
- }
56
- }
57
- }
58
- if (parentNode.rest) {
59
- var metadata = initScopeMetadata(parentNode, path.slice(1), path[0]);
60
- declareIdentInScope(parentNode.rest.name, metadata, state);
61
- }
62
- if (parentNode.type === Syntax.FunctionExpression && parentNode.id) {
63
- var metaData = initScopeMetadata(parentNode, path.parentNodeslice, parentNode);
64
- declareIdentInScope(parentNode.id.name, metaData, state);
65
- }
66
- }
67
- collectClosureIdentsAndTraverse(node, path, state);
68
- }
69
- if (_nodeIsBlockScopeBoundary(node, parentNode)) {
70
- startIndex = state.g.buffer.length;
71
- state = utils.updateState(state, {localScope: {
72
- parentNode: parentNode,
73
- parentScope: state.localScope,
74
- identifiers: {},
75
- tempVarIndex: 0,
76
- tempVars: []
77
- }});
78
- if (parentNode.type === Syntax.CatchClause) {
79
- var metadata = initScopeMetadata(parentNode, path.slice(1), parentNode);
80
- declareIdentInScope(parentNode.param.name, metadata, state);
81
- }
82
- collectBlockIdentsAndTraverse(node, path, state);
83
- }
84
- }
85
- function traverser(node, path, state) {
86
- node.range && utils.catchup(node.range[0], state);
87
- traverse(node, path, state);
88
- node.range && utils.catchup(node.range[1], state);
89
- }
90
- utils.analyzeAndTraverse(walker, traverser, node, path, state);
91
- if (startIndex !== null) {
92
- utils.injectTempVarDeclarations(state, startIndex);
93
- }
94
- }
95
- function collectClosureIdentsAndTraverse(node, path, state) {
96
- utils.analyzeAndTraverse(visitLocalClosureIdentifiers, collectClosureIdentsAndTraverse, node, path, state);
97
- }
98
- function collectBlockIdentsAndTraverse(node, path, state) {
99
- utils.analyzeAndTraverse(visitLocalBlockIdentifiers, collectBlockIdentsAndTraverse, node, path, state);
100
- }
101
- function visitLocalClosureIdentifiers(node, path, state) {
102
- var metaData;
103
- switch (node.type) {
104
- case Syntax.ArrowFunctionExpression:
105
- case Syntax.FunctionExpression:
106
- return false;
107
- case Syntax.ClassDeclaration:
108
- case Syntax.ClassExpression:
109
- case Syntax.FunctionDeclaration:
110
- if (node.id) {
111
- metaData = initScopeMetadata(getBoundaryNode(path), path.slice(), node);
112
- declareIdentInScope(node.id.name, metaData, state);
113
- }
114
- return false;
115
- case Syntax.VariableDeclarator:
116
- if (path[0].kind === 'var') {
117
- metaData = initScopeMetadata(getBoundaryNode(path), path.slice(), node);
118
- declareIdentInScope(node.id.name, metaData, state);
119
- }
120
- break;
121
- }
122
- }
123
- function visitLocalBlockIdentifiers(node, path, state) {
124
- if (node.type === Syntax.CatchClause) {
125
- return false;
126
- }
127
- }
128
- function walker(node, path, state) {
129
- var visitors = state.g.visitors;
130
- for (var i = 0; i < visitors.length; i++) {
131
- if (visitors[i].test(node, path, state)) {
132
- return visitors[i](traverse, node, path, state);
133
- }
134
- }
135
- }
136
- var _astCache = {};
137
- function getAstForSource(source, options) {
138
- if (_astCache[source] && !options.disableAstCache) {
139
- return _astCache[source];
140
- }
141
- var ast = esprima.parse(source, {
142
- comment: true,
143
- loc: true,
144
- range: true,
145
- sourceType: options.sourceType
146
- });
147
- if (!options.disableAstCache) {
148
- _astCache[source] = ast;
149
- }
150
- return ast;
151
- }
152
- function transform(visitors, source, options) {
153
- options = options || {};
154
- var ast;
155
- try {
156
- ast = getAstForSource(source, options);
157
- } catch (e) {
158
- e.message = 'Parse Error: ' + e.message;
159
- throw e;
160
- }
161
- var state = utils.createState(source, ast, options);
162
- state.g.visitors = visitors;
163
- if (options.sourceMap) {
164
- var SourceMapGenerator = require("source-map").SourceMapGenerator;
165
- state.g.sourceMap = new SourceMapGenerator({file: options.filename || 'transformed.js'});
166
- }
167
- traverse(ast, [], state);
168
- utils.catchup(source.length, state);
169
- var ret = {
170
- code: state.g.buffer,
171
- extra: state.g.extra
172
- };
173
- if (options.sourceMap) {
174
- ret.sourceMap = state.g.sourceMap;
175
- ret.sourceMapFilename = options.filename || 'source.js';
176
- }
177
- return ret;
178
- }
179
- exports.transform = transform;
180
- exports.Syntax = Syntax;