sequenceserver 2.0.0 → 2.1.0

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Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
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  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
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  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
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  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
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@@ -1 +0,0 @@
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- module.exports = require("npm:esprima-fb@13001.1001.0-dev-harmony-fb/esprima");
@@ -1,56 +0,0 @@
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- The MIT License (MIT)
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-
3
- Copyright (c) Feross Aboukhadijeh
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-
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- Permission is hereby granted, free of charge, to any person obtaining a copy
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- of this software and associated documentation files (the "Software"), to deal
7
- in the Software without restriction, including without limitation the rights
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- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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- copies of the Software, and to permit persons to whom the Software is
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- furnished to do so, subject to the following conditions:
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-
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- The above copyright notice and this permission notice shall be included in
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- all copies or substantial portions of the Software.
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-
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- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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- AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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- THE SOFTWARE.
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-
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- ===========================================
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- ieee754 originally contained this license:
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- ===========================================
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-
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- Copyright (c) 2008, Fair Oaks Labs, Inc.
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- All rights reserved.
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-
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- Redistribution and use in source and binary forms, with or without
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- modification, are permitted provided that the following conditions are met:
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-
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- * Redistributions of source code must retain the above copyright notice,
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- this list of conditions and the following disclaimer.
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-
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- * Redistributions in binary form must reproduce the above copyright notice,
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- this list of conditions and the following disclaimer in the documentation
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- and/or other materials provided with the distribution.
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-
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- * Neither the name of Fair Oaks Labs, Inc. nor the names of its contributors
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- may be used to endorse or promote products derived from this software
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- without specific prior written permission.
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-
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- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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- AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
46
- IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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- ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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- LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49
- CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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- SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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- INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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- CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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- ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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- POSSIBILITY OF SUCH DAMAGE.
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-
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- Modifications to writeIEEE754 to support negative zeroes made by Brian White.
@@ -1,34 +0,0 @@
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- {
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- "name": "ieee754",
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- "version": "1.1.6",
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- "description": "Read/write IEEE754 floating point numbers from/to a Buffer or array-like object",
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- "main": "index.js",
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- "dependencies": {},
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- "devDependencies": {
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- "standard": "^4.1.1",
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- "tape": "^4.0.0",
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- "zuul": "^3.0.0"
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- },
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- "repository": {
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- "type": "git",
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- "url": "git://github.com/feross/ieee754.git"
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- },
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- "keywords": [
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- "ieee754",
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- "IEEE 754",
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- "floating point",
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- "buffer",
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- "convert"
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- ],
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- "author": "Feross Aboukhadijeh <feross@feross.org> (http://feross.org/)",
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- "contributors": [
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- "Romain Beauxis <toots@rastageeks.org>"
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- ],
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- "scripts": {
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- "test": "standard && npm run test-node && npm run test-browser",
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- "test-browser": "zuul -- test/*.js",
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- "test-browser-local": "zuul --local -- test/*.js",
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- "test-node": "tape test/*.js"
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- },
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- "license": "MIT"
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- }
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- /* */
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- (function(Buffer) {
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- var ieee754 = require("../index");
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- var test = require("tape");
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- var EPSILON = 0.00001;
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- test('read float', function(t) {
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- var buf = new Buffer(4);
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- buf.writeFloatLE(42.42, 0);
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- var num = ieee754.read(buf, 0, true, 23, 4);
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- t.ok(Math.abs(num - 42.42) < EPSILON);
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- t.end();
12
- });
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- test('write float', function(t) {
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- var buf = new Buffer(4);
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- ieee754.write(buf, 42.42, 0, true, 23, 4);
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- var num = buf.readFloatLE(0);
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- t.ok(Math.abs(num - 42.42) < EPSILON);
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- t.end();
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- });
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- })(require("buffer").Buffer);
@@ -1 +0,0 @@
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- module.exports = require("npm:ieee754@1.1.6/index");
@@ -1,11 +0,0 @@
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-
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- 1.0.0 / 2013-02-01
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- ==================
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-
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- * Merge pull request #2 from jepso-ci-4-all/master
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- * Add jepso-ci badge to readme
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- * Merge pull request #1 from jepso-ci-4-all/master
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- * Add jepso-ci
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- * Add tests
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- * remove es5 from readme confuses ppl
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- * use Array.isArray if exists.
@@ -1,27 +0,0 @@
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- <a href="https://jepso-ci.com/yields/isArray">
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- <img src="https://jepso-ci.com/yields/isArray.svg" align="right" alt="jepso-ci status" />
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- </a>
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- # isArray
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-
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- Check if the given `value` is an `Array`.
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-
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- ## Installation
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-
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- $ component install yields/isArray
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-
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- ## API
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-
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- ### isArray(val)
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-
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- ```javascript
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- isArray(arguments);
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- // > false
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- isArray();
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- // > false
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- isArray([]);
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- // > true
23
- ```
24
-
25
- ## License
26
-
27
- MIT
@@ -1,13 +0,0 @@
1
- {
2
- "name": "isArray",
3
- "repo": "yields/isArray",
4
- "description": "Check if the given value is an Array",
5
- "version": "1.0.0",
6
- "keywords": ["isArray", "es5", "array"],
7
- "dependencies": {},
8
- "development": {},
9
- "license": "MIT",
10
- "scripts": [
11
- "index.js"
12
- ]
13
- }
@@ -1,33 +0,0 @@
1
-
2
- /**
3
- * isArray
4
- */
5
-
6
- var isArray = Array.isArray;
7
-
8
- /**
9
- * toString
10
- */
11
-
12
- var str = Object.prototype.toString;
13
-
14
- /**
15
- * Whether or not the given `val`
16
- * is an array.
17
- *
18
- * example:
19
- *
20
- * isArray([]);
21
- * // > true
22
- * isArray(arguments);
23
- * // > false
24
- * isArray('');
25
- * // > false
26
- *
27
- * @param {mixed} val
28
- * @return {bool}
29
- */
30
-
31
- module.exports = isArray || function (val) {
32
- return !! val && '[object Array]' == str.call(val);
33
- };
@@ -1,10 +0,0 @@
1
-
2
- {
3
- "name": "is-array",
4
- "repository": "retrofox/is-array",
5
- "description": "Check if the given value is an Array",
6
- "version": "1.0.1",
7
- "keywords": ["isArray", "es5", "array"],
8
- "dependencies": {},
9
- "license": "MIT"
10
- }
@@ -1,46 +0,0 @@
1
- <!DOCTYPE html>
2
- <html>
3
- <head>
4
- <title>isArray Tests</title>
5
- <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
6
- <style>
7
- .fail {
8
- color: red;
9
- }
10
- .pass {
11
- color: green;
12
- }
13
- </style>
14
- </head>
15
- <body>
16
- <ul id="results"></ul>
17
- <script src="../build/build.js"></script>
18
- <script>
19
- var isArray = require('isArray');
20
- var results = document.getElementById('results');
21
- function assert(val, text) {
22
- results.innerHTML += '<li class="' + (val === true?'pass':'fail') + '">' + (val === true?'PASS':'FAIL') + ': ' + text + '</li>';
23
- if (val !== true) window.testsPassed = false;
24
- }
25
- assert(isArray([]), '`[]` is an array.');
26
- assert(isArray([1]), '`[1]` is an array.');
27
- assert(isArray([1, 2, 3]), '`[1, 2, 3]` is an array.');
28
- assert(!isArray(""), '`""` is not an array.');
29
- assert(!isArray("foo"), '`"foo"` is not an array.');
30
- assert(!isArray(5), '`5` is not an array.');
31
- assert(!isArray(null), '`null` is not an array.');
32
- assert(!isArray(undefined), '`undefined` is not an array.');
33
- assert(!isArray(true), '`true` is not an array.');
34
- assert(!isArray(false), '`false` is not an array.');
35
- assert(!isArray({}), '`{}` is not an array.');
36
- assert(!isArray({length: 1}), '`{length: 1}` is not an array.');
37
- (function () {
38
- assert(!isArray(arguments), '`arguments` is not an array.');
39
- }());
40
- (function () {
41
- assert(!isArray(arguments), '`arguments` is not an array.');
42
- }(1, 2, 3));
43
- window.testsPassed = window.testsPassed != false;
44
- </script>
45
- </body>
46
- </html>
@@ -1 +0,0 @@
1
- module.exports = require("npm:is-array@1.0.1/index");
@@ -1,201 +0,0 @@
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@@ -1,98 +0,0 @@
1
- # JSTransform [![Build Status](https://travis-ci.org/facebook/jstransform.svg?branch=master)](https://travis-ci.org/facebook/jstransform)
2
-
3
- A simple utility for pluggable JS syntax transforms using the esprima parser.
4
-
5
- * Makes it simple to write and plug-in syntax transformations
6
- * Makes it simple to coalesce multiple syntax transformations in a single pass of the AST
7
- * Gives complete control over the formatting of the output on a per-transformation basis
8
- * Supports source map generation
9
- * Comes pre-bundled with a small set of (optional) ES6 -> ES5 transforms
10
-
11
- NOTE: If you're looking for a library for writing new greenfield JS transformations, consider looking at the [Recast](https://github.com/benjamn/recast) library instead of jstransform. We are still actively supporting jstransform (and intend to for the foreseeable future), but longer term we would like to direct efforts toward Recast. Recast does a far better job of supporting a multi-pass JS transformation pipeline, and this is important when attempting to apply many transformations to a source file.
12
-
13
- ## Examples
14
- Using a pre-bundled or existing transform:
15
- ```js
16
- /**
17
- * Reads a source file that may (or may not) contain ES6 classes, transforms it
18
- * to ES5 compatible code using the pre-bundled ES6 class visitors, and prints
19
- * out the result.
20
- */
21
- var es6ClassVisitors = require('jstransform/visitors/es6-class-visitors').visitorList;
22
- var fs = require('fs');
23
- var jstransform = require('jstransform');
24
-
25
- var originalFileContents = fs.readFileSync('path/to/original/file.js', 'utf-8');
26
-
27
- var transformedFileData = jstransform.transform(
28
- es6ClassVisitors,
29
- originalFileContents
30
- );
31
-
32
- console.log(transformedFileData.code);
33
- ```
34
-
35
- Using multiple pre-bundled or existing transforms at once:
36
- ```js
37
- /**
38
- * Reads a source file that may (or may not) contain ES6 classes *or* arrow
39
- * functions, transforms them to ES5 compatible code using the pre-bundled ES6
40
- * visitors, and prints out the result.
41
- */
42
- var es6ArrowFuncVisitors = require('jstransform/visitors/es6-arrow-function-visitors').visitorList;
43
- var es6ClassVisitors = require('jstransform/visitors/es6-class-visitors').visitorList;
44
- var jstransform = require('jstransform');
45
-
46
- // Normally you'd read this from the filesystem, but I'll just use a string here
47
- // to simplify the example.
48
- var originalFileContents = "var a = (param1) => param1; class FooClass {}";
49
-
50
- var transformedFileData = jstransform.transform(
51
- es6ClassVisitors.concat(es6ArrowFuncVisitors),
52
- originalFileContents
53
- );
54
-
55
- // var a = function(param1) {return param1;}; function FooClass(){"use strict";}
56
- console.log(transformedFileData.code);
57
- ```
58
-
59
- Writing a simple custom transform:
60
- ```js
61
- /**
62
- * Creates a custom transformation visitor that prefixes all calls to the
63
- * `eval()` function with a call to `alert()` saying how much of a clown you are
64
- * for using eval.
65
- */
66
- var jstransform = require('jstransform');
67
- var utils = require('jstransform/src/utils');
68
-
69
- var Syntax = jstransform.Syntax;
70
-
71
- function visitEvalCallExpressions(traverse, node, path, state) {
72
- // Appends an alert() call to the output buffer *before* the visited node
73
- // (in this case the eval call) is appended to the output buffer
74
- utils.append('alert("...eval?...really?...");', state);
75
-
76
- // Now we copy the eval expression to the output buffer from the original
77
- // source
78
- utils.catchup(node.range[1], state);
79
- }
80
- visitEvalCallExpressions.test = function(node, path, state) {
81
- return node.type === Syntax.CallExpression
82
- && node.callee.type === Syntax.Identifier
83
- && node.callee.name === 'eval';
84
- };
85
-
86
- // Normally you'd read this from the filesystem, but I'll just use a string here
87
- // to simplify the example.
88
- var originalFileContents = "eval('foo');";
89
-
90
- var transformedFileData = jstransform.transform(
91
- [visitEvalCallExpressions], // Multiple visitors may be applied at once, so an
92
- // array is always expected for the first argument
93
- originalFileContents
94
- );
95
-
96
- // alert("...eval?...really?...");eval('foo');
97
- console.log(transformedFileData.code);
98
- ```
@@ -1,3 +0,0 @@
1
- /* */
2
- "format cjs";
3
- require.requireActual('./polyfill/Object.es6.js');
@@ -1,8 +0,0 @@
1
- /* */
2
- var jstransform = require("./src/jstransform");
3
- var arrowFuncVisitors = require("./visitors/es6-arrow-function-visitors");
4
- var restParamVisitors = require("./visitors/es6-rest-param-visitors");
5
- var es7SpreadPropertyVisitors = require("./visitors/es7-spread-property-visitors");
6
- exports.process = function(sourceText, sourcePath) {
7
- return jstransform.transform(arrowFuncVisitors.visitorList.concat(restParamVisitors.visitorList).concat(es7SpreadPropertyVisitors.visitorList), sourceText).code;
8
- };
@@ -1,52 +0,0 @@
1
- {
2
- "name": "jstransform",
3
- "version": "10.1.0",
4
- "description": "A simple AST visitor-based JS transformer",
5
- "contributors": [
6
- {
7
- "name": "Jeff Morrison",
8
- "email": "jeffmo@fb.com"
9
- }
10
- ],
11
- "main": "src/jstransform",
12
- "repository": {
13
- "type": "git",
14
- "url": "git@github.com:facebook/jstransform.git"
15
- },
16
- "keywords": [
17
- "transformer",
18
- "compiler",
19
- "syntax",
20
- "visitor"
21
- ],
22
- "dependencies": {
23
- "base62": "0.1.1",
24
- "esprima-fb": "13001.1001.0-dev-harmony-fb",
25
- "source-map": "0.1.31"
26
- },
27
- "licenses": [
28
- {
29
- "type": "Apache-2.0",
30
- "url": "http://www.apache.org/licenses/LICENSE-2.0"
31
- }
32
- ],
33
- "engines": {
34
- "node": ">=0.8.8"
35
- },
36
- "devDependencies": {
37
- "jest-cli": "^0.2",
38
- "jshint": "^2.5.10"
39
- },
40
- "jest": {
41
- "scriptPreprocessor": "<rootDir>/jestPreprocessor.js",
42
- "setupEnvScriptFile": "<rootDir>/jestEnvironment.js",
43
- "testPathIgnorePatterns": [
44
- "/node_modules/",
45
- "/__tests__/[^/]*/.+"
46
- ]
47
- },
48
- "scripts": {
49
- "prepublish": "jest && jshint --config=.jshintrc --exclude=node_modules .",
50
- "test": "jest && jshint --config=.jshintrc --exclude=node_modules ."
51
- }
52
- }