sequenceserver 2.0.0 → 2.1.0

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Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
  217. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
  218. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
  219. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
  223. data/public/vendor/npm/scheduler@0.21.0.js +1 -0
  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
  238. data/public/vendor/npm/util@0.10.3.js +1 -1
  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
  252. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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@@ -0,0 +1,2 @@
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+ /* */
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+ module.exports = System._nodeRequire ? System._nodeRequire('assert') : require('assert');
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  {
2
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  "registry": "npm",
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  "dependencies": {
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- "buffer": "^3.0.1"
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+ "assert": "^1.3.0"
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  }
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  }
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+ module.exports = require("github:jspm/nodelibs-assert@0.1.0/index");
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+ {
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+ "registry": "npm",
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+ "dependencies": {
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+ "buffer": "^5.0.6"
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+ }
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+ }
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+ module.exports = require("github:jspm/nodelibs-buffer@0.1.1/index");
@@ -1,6 +1,6 @@
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  {
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  "registry": "jspm",
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  "dependencies": {
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- "process": "npm:process@^0.10.0"
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+ "process": "npm:process@^0.11.0"
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  }
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- }
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+ }
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+ module.exports = require("github:jspm/nodelibs-process@0.1.2/index");
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+ /* */
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+ module.exports = System._nodeRequire ? System._nodeRequire('vm') : require('vm-browserify');
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+ {
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+ "registry": "npm",
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+ "dependencies": {
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+ "vm-browserify": "0.0.4"
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+ }
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+ }
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+ module.exports = require("github:jspm/nodelibs-vm@0.1.0/index");
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+ # assert change log
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+
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+ All notable changes to this project will be documented in this file.
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+
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+ This project adheres to [Semantic Versioning](http://semver.org/).
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+
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+ ## 1.5.0
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+ * Add strict mode APIs. ([@lukechilds](https://github.com/lukechilds) in [#41](https://github.com/browserify/commonjs-assert/pull/41))
@@ -0,0 +1,105 @@
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+ # assert
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+
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+ [![Build Status](https://travis-ci.org/browserify/commonjs-assert.svg?branch=master)](https://travis-ci.org/browserify/commonjs-assert)
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+
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+ This module is used for writing unit tests for your applications, you can access it with `require('assert')`.
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+
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+ It aims to be fully compatibe with the [node.js assert module](http://nodejs.org/api/assert.html), same API and same behavior, just adding support for web browsers.
8
+ The API and code may contain traces of the [CommonJS Unit Testing 1.0 spec](http://wiki.commonjs.org/wiki/Unit_Testing/1.0) which they were based on, but both have evolved significantly since then.
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+
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+ A `strict` and a `legacy` mode exist, while it is recommended to only use `strict mode`.
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+
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+ ## Strict mode
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+
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+ When using the `strict mode`, any `assert` function will use the equality used in the strict function mode. So `assert.deepEqual()` will, for example, work the same as `assert.deepStrictEqual()`.
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+
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+ It can be accessed using:
17
+
18
+ ```js
19
+ const assert = require('assert').strict;
20
+ ```
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+
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+ ## Legacy mode
23
+
24
+ > Deprecated: Use strict mode instead.
25
+
26
+ When accessing `assert` directly instead of using the `strict` property, the
27
+ [Abstract Equality Comparison](https://tc39.github.io/ecma262/#sec-abstract-equality-comparison) will be used for any function without a
28
+ "strict" in its name (e.g. `assert.deepEqual()`).
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+
30
+ It can be accessed using:
31
+
32
+ ```js
33
+ const assert = require('assert');
34
+ ```
35
+
36
+ It is recommended to use the `strict mode` instead as the Abstract Equality Comparison can often have surprising results. Especially
37
+ in case of `assert.deepEqual()` as the used comparison rules there are very lax.
38
+
39
+ E.g.
40
+
41
+ ```js
42
+ // WARNING: This does not throw an AssertionError!
43
+ assert.deepEqual(/a/gi, new Date());
44
+ ```
45
+
46
+
47
+ ## assert.fail(actual, expected, message, operator)
48
+ Throws an exception that displays the values for actual and expected separated by the provided operator.
49
+
50
+ ## assert(value, message), assert.ok(value, [message])
51
+ Tests if value is truthy, it is equivalent to assert.equal(true, !!value, message);
52
+
53
+ ## assert.equal(actual, expected, [message])
54
+ Tests shallow, coercive equality with the equal comparison operator ( == ).
55
+
56
+ ## assert.notEqual(actual, expected, [message])
57
+ Tests shallow, coercive non-equality with the not equal comparison operator ( != ).
58
+
59
+ ## assert.deepEqual(actual, expected, [message])
60
+ Tests for deep equality.
61
+
62
+ ## assert.deepStrictEqual(actual, expected, [message])
63
+ Tests for deep equality, as determined by the strict equality operator ( === )
64
+
65
+ ## assert.notDeepEqual(actual, expected, [message])
66
+ Tests for any deep inequality.
67
+
68
+ ## assert.strictEqual(actual, expected, [message])
69
+ Tests strict equality, as determined by the strict equality operator ( === )
70
+
71
+ ## assert.notStrictEqual(actual, expected, [message])
72
+ Tests strict non-equality, as determined by the strict not equal operator ( !== )
73
+
74
+ ## assert.throws(block, [error], [message])
75
+ Expects block to throw an error. error can be constructor, regexp or validation function.
76
+
77
+ Validate instanceof using constructor:
78
+
79
+ ```javascript
80
+ assert.throws(function() { throw new Error("Wrong value"); }, Error);
81
+ ```
82
+
83
+ Validate error message using RegExp:
84
+
85
+ ```javascript
86
+ assert.throws(function() { throw new Error("Wrong value"); }, /value/);
87
+ ```
88
+
89
+ Custom error validation:
90
+
91
+ ```javascript
92
+ assert.throws(function() {
93
+ throw new Error("Wrong value");
94
+ }, function(err) {
95
+ if ( (err instanceof Error) && /value/.test(err) ) {
96
+ return true;
97
+ }
98
+ }, "unexpected error");
99
+ ```
100
+
101
+ ## assert.doesNotThrow(block, [message])
102
+ Expects block not to throw an error, see assert.throws for details.
103
+
104
+ ## assert.ifError(value)
105
+ Tests if value is not a false value, throws if it is a true value. Useful when testing the first argument, error in callbacks.
@@ -0,0 +1,327 @@
1
+ /* */
2
+ (function(Buffer) {
3
+ 'use strict';
4
+ var objectAssign = require('object-assign');
5
+ function compare(a, b) {
6
+ if (a === b) {
7
+ return 0;
8
+ }
9
+ var x = a.length;
10
+ var y = b.length;
11
+ for (var i = 0,
12
+ len = Math.min(x, y); i < len; ++i) {
13
+ if (a[i] !== b[i]) {
14
+ x = a[i];
15
+ y = b[i];
16
+ break;
17
+ }
18
+ }
19
+ if (x < y) {
20
+ return -1;
21
+ }
22
+ if (y < x) {
23
+ return 1;
24
+ }
25
+ return 0;
26
+ }
27
+ function isBuffer(b) {
28
+ if (global.Buffer && typeof global.Buffer.isBuffer === 'function') {
29
+ return global.Buffer.isBuffer(b);
30
+ }
31
+ return !!(b != null && b._isBuffer);
32
+ }
33
+ var util = require('util');
34
+ var hasOwn = Object.prototype.hasOwnProperty;
35
+ var pSlice = Array.prototype.slice;
36
+ var functionsHaveNames = (function() {
37
+ return function foo() {}.name === 'foo';
38
+ }());
39
+ function pToString(obj) {
40
+ return Object.prototype.toString.call(obj);
41
+ }
42
+ function isView(arrbuf) {
43
+ if (isBuffer(arrbuf)) {
44
+ return false;
45
+ }
46
+ if (typeof global.ArrayBuffer !== 'function') {
47
+ return false;
48
+ }
49
+ if (typeof ArrayBuffer.isView === 'function') {
50
+ return ArrayBuffer.isView(arrbuf);
51
+ }
52
+ if (!arrbuf) {
53
+ return false;
54
+ }
55
+ if (arrbuf instanceof DataView) {
56
+ return true;
57
+ }
58
+ if (arrbuf.buffer && arrbuf.buffer instanceof ArrayBuffer) {
59
+ return true;
60
+ }
61
+ return false;
62
+ }
63
+ var assert = module.exports = ok;
64
+ var regex = /\s*function\s+([^\(\s]*)\s*/;
65
+ function getName(func) {
66
+ if (!util.isFunction(func)) {
67
+ return;
68
+ }
69
+ if (functionsHaveNames) {
70
+ return func.name;
71
+ }
72
+ var str = func.toString();
73
+ var match = str.match(regex);
74
+ return match && match[1];
75
+ }
76
+ assert.AssertionError = function AssertionError(options) {
77
+ this.name = 'AssertionError';
78
+ this.actual = options.actual;
79
+ this.expected = options.expected;
80
+ this.operator = options.operator;
81
+ if (options.message) {
82
+ this.message = options.message;
83
+ this.generatedMessage = false;
84
+ } else {
85
+ this.message = getMessage(this);
86
+ this.generatedMessage = true;
87
+ }
88
+ var stackStartFunction = options.stackStartFunction || fail;
89
+ if (Error.captureStackTrace) {
90
+ Error.captureStackTrace(this, stackStartFunction);
91
+ } else {
92
+ var err = new Error();
93
+ if (err.stack) {
94
+ var out = err.stack;
95
+ var fn_name = getName(stackStartFunction);
96
+ var idx = out.indexOf('\n' + fn_name);
97
+ if (idx >= 0) {
98
+ var next_line = out.indexOf('\n', idx + 1);
99
+ out = out.substring(next_line + 1);
100
+ }
101
+ this.stack = out;
102
+ }
103
+ }
104
+ };
105
+ util.inherits(assert.AssertionError, Error);
106
+ function truncate(s, n) {
107
+ if (typeof s === 'string') {
108
+ return s.length < n ? s : s.slice(0, n);
109
+ } else {
110
+ return s;
111
+ }
112
+ }
113
+ function inspect(something) {
114
+ if (functionsHaveNames || !util.isFunction(something)) {
115
+ return util.inspect(something);
116
+ }
117
+ var rawname = getName(something);
118
+ var name = rawname ? ': ' + rawname : '';
119
+ return '[Function' + name + ']';
120
+ }
121
+ function getMessage(self) {
122
+ return truncate(inspect(self.actual), 128) + ' ' + self.operator + ' ' + truncate(inspect(self.expected), 128);
123
+ }
124
+ function fail(actual, expected, message, operator, stackStartFunction) {
125
+ throw new assert.AssertionError({
126
+ message: message,
127
+ actual: actual,
128
+ expected: expected,
129
+ operator: operator,
130
+ stackStartFunction: stackStartFunction
131
+ });
132
+ }
133
+ assert.fail = fail;
134
+ function ok(value, message) {
135
+ if (!value)
136
+ fail(value, true, message, '==', assert.ok);
137
+ }
138
+ assert.ok = ok;
139
+ assert.equal = function equal(actual, expected, message) {
140
+ if (actual != expected)
141
+ fail(actual, expected, message, '==', assert.equal);
142
+ };
143
+ assert.notEqual = function notEqual(actual, expected, message) {
144
+ if (actual == expected) {
145
+ fail(actual, expected, message, '!=', assert.notEqual);
146
+ }
147
+ };
148
+ assert.deepEqual = function deepEqual(actual, expected, message) {
149
+ if (!_deepEqual(actual, expected, false)) {
150
+ fail(actual, expected, message, 'deepEqual', assert.deepEqual);
151
+ }
152
+ };
153
+ assert.deepStrictEqual = function deepStrictEqual(actual, expected, message) {
154
+ if (!_deepEqual(actual, expected, true)) {
155
+ fail(actual, expected, message, 'deepStrictEqual', assert.deepStrictEqual);
156
+ }
157
+ };
158
+ function _deepEqual(actual, expected, strict, memos) {
159
+ if (actual === expected) {
160
+ return true;
161
+ } else if (isBuffer(actual) && isBuffer(expected)) {
162
+ return compare(actual, expected) === 0;
163
+ } else if (util.isDate(actual) && util.isDate(expected)) {
164
+ return actual.getTime() === expected.getTime();
165
+ } else if (util.isRegExp(actual) && util.isRegExp(expected)) {
166
+ return actual.source === expected.source && actual.global === expected.global && actual.multiline === expected.multiline && actual.lastIndex === expected.lastIndex && actual.ignoreCase === expected.ignoreCase;
167
+ } else if ((actual === null || typeof actual !== 'object') && (expected === null || typeof expected !== 'object')) {
168
+ return strict ? actual === expected : actual == expected;
169
+ } else if (isView(actual) && isView(expected) && pToString(actual) === pToString(expected) && !(actual instanceof Float32Array || actual instanceof Float64Array)) {
170
+ return compare(new Uint8Array(actual.buffer), new Uint8Array(expected.buffer)) === 0;
171
+ } else if (isBuffer(actual) !== isBuffer(expected)) {
172
+ return false;
173
+ } else {
174
+ memos = memos || {
175
+ actual: [],
176
+ expected: []
177
+ };
178
+ var actualIndex = memos.actual.indexOf(actual);
179
+ if (actualIndex !== -1) {
180
+ if (actualIndex === memos.expected.indexOf(expected)) {
181
+ return true;
182
+ }
183
+ }
184
+ memos.actual.push(actual);
185
+ memos.expected.push(expected);
186
+ return objEquiv(actual, expected, strict, memos);
187
+ }
188
+ }
189
+ function isArguments(object) {
190
+ return Object.prototype.toString.call(object) == '[object Arguments]';
191
+ }
192
+ function objEquiv(a, b, strict, actualVisitedObjects) {
193
+ if (a === null || a === undefined || b === null || b === undefined)
194
+ return false;
195
+ if (util.isPrimitive(a) || util.isPrimitive(b))
196
+ return a === b;
197
+ if (strict && Object.getPrototypeOf(a) !== Object.getPrototypeOf(b))
198
+ return false;
199
+ var aIsArgs = isArguments(a);
200
+ var bIsArgs = isArguments(b);
201
+ if ((aIsArgs && !bIsArgs) || (!aIsArgs && bIsArgs))
202
+ return false;
203
+ if (aIsArgs) {
204
+ a = pSlice.call(a);
205
+ b = pSlice.call(b);
206
+ return _deepEqual(a, b, strict);
207
+ }
208
+ var ka = objectKeys(a);
209
+ var kb = objectKeys(b);
210
+ var key,
211
+ i;
212
+ if (ka.length !== kb.length)
213
+ return false;
214
+ ka.sort();
215
+ kb.sort();
216
+ for (i = ka.length - 1; i >= 0; i--) {
217
+ if (ka[i] !== kb[i])
218
+ return false;
219
+ }
220
+ for (i = ka.length - 1; i >= 0; i--) {
221
+ key = ka[i];
222
+ if (!_deepEqual(a[key], b[key], strict, actualVisitedObjects))
223
+ return false;
224
+ }
225
+ return true;
226
+ }
227
+ assert.notDeepEqual = function notDeepEqual(actual, expected, message) {
228
+ if (_deepEqual(actual, expected, false)) {
229
+ fail(actual, expected, message, 'notDeepEqual', assert.notDeepEqual);
230
+ }
231
+ };
232
+ assert.notDeepStrictEqual = notDeepStrictEqual;
233
+ function notDeepStrictEqual(actual, expected, message) {
234
+ if (_deepEqual(actual, expected, true)) {
235
+ fail(actual, expected, message, 'notDeepStrictEqual', notDeepStrictEqual);
236
+ }
237
+ }
238
+ assert.strictEqual = function strictEqual(actual, expected, message) {
239
+ if (actual !== expected) {
240
+ fail(actual, expected, message, '===', assert.strictEqual);
241
+ }
242
+ };
243
+ assert.notStrictEqual = function notStrictEqual(actual, expected, message) {
244
+ if (actual === expected) {
245
+ fail(actual, expected, message, '!==', assert.notStrictEqual);
246
+ }
247
+ };
248
+ function expectedException(actual, expected) {
249
+ if (!actual || !expected) {
250
+ return false;
251
+ }
252
+ if (Object.prototype.toString.call(expected) == '[object RegExp]') {
253
+ return expected.test(actual);
254
+ }
255
+ try {
256
+ if (actual instanceof expected) {
257
+ return true;
258
+ }
259
+ } catch (e) {}
260
+ if (Error.isPrototypeOf(expected)) {
261
+ return false;
262
+ }
263
+ return expected.call({}, actual) === true;
264
+ }
265
+ function _tryBlock(block) {
266
+ var error;
267
+ try {
268
+ block();
269
+ } catch (e) {
270
+ error = e;
271
+ }
272
+ return error;
273
+ }
274
+ function _throws(shouldThrow, block, expected, message) {
275
+ var actual;
276
+ if (typeof block !== 'function') {
277
+ throw new TypeError('"block" argument must be a function');
278
+ }
279
+ if (typeof expected === 'string') {
280
+ message = expected;
281
+ expected = null;
282
+ }
283
+ actual = _tryBlock(block);
284
+ message = (expected && expected.name ? ' (' + expected.name + ').' : '.') + (message ? ' ' + message : '.');
285
+ if (shouldThrow && !actual) {
286
+ fail(actual, expected, 'Missing expected exception' + message);
287
+ }
288
+ var userProvidedMessage = typeof message === 'string';
289
+ var isUnwantedException = !shouldThrow && util.isError(actual);
290
+ var isUnexpectedException = !shouldThrow && actual && !expected;
291
+ if ((isUnwantedException && userProvidedMessage && expectedException(actual, expected)) || isUnexpectedException) {
292
+ fail(actual, expected, 'Got unwanted exception' + message);
293
+ }
294
+ if ((shouldThrow && actual && expected && !expectedException(actual, expected)) || (!shouldThrow && actual)) {
295
+ throw actual;
296
+ }
297
+ }
298
+ assert.throws = function(block, error, message) {
299
+ _throws(true, block, error, message);
300
+ };
301
+ assert.doesNotThrow = function(block, error, message) {
302
+ _throws(false, block, error, message);
303
+ };
304
+ assert.ifError = function(err) {
305
+ if (err)
306
+ throw err;
307
+ };
308
+ function strict(value, message) {
309
+ if (!value)
310
+ fail(value, true, message, '==', strict);
311
+ }
312
+ assert.strict = objectAssign(strict, assert, {
313
+ equal: assert.strictEqual,
314
+ deepEqual: assert.deepStrictEqual,
315
+ notEqual: assert.notStrictEqual,
316
+ notDeepEqual: assert.notDeepStrictEqual
317
+ });
318
+ assert.strict.strict = assert.strict;
319
+ var objectKeys = Object.keys || function(obj) {
320
+ var keys = [];
321
+ for (var key in obj) {
322
+ if (hasOwn.call(obj, key))
323
+ keys.push(key);
324
+ }
325
+ return keys;
326
+ };
327
+ })(require('buffer').Buffer);
@@ -0,0 +1,32 @@
1
+ {
2
+ "name": "assert",
3
+ "description": "The node.js assert module, re-packaged for web browsers.",
4
+ "version": "1.5.0",
5
+ "dependencies": {
6
+ "object-assign": "^4.1.1",
7
+ "util": "0.10.3"
8
+ },
9
+ "devDependencies": {
10
+ "mocha": "~1.21.4",
11
+ "zuul": "~3.10.0",
12
+ "zuul-ngrok": "^4.0.0"
13
+ },
14
+ "homepage": "https://github.com/browserify/commonjs-assert",
15
+ "keywords": [
16
+ "assert",
17
+ "browser"
18
+ ],
19
+ "license": "MIT",
20
+ "main": "./assert.js",
21
+ "repository": {
22
+ "type": "git",
23
+ "url": "git://github.com/browserify/commonjs-assert.git"
24
+ },
25
+ "scripts": {
26
+ "browser-local": "zuul --no-coverage --local 8000 -- test.js",
27
+ "test": "npm run test-node && npm run test-browser",
28
+ "test-browser": "zuul -- test.js",
29
+ "test-native": "TEST_NATIVE=true mocha --ui qunit test.js",
30
+ "test-node": "mocha --ui qunit test.js"
31
+ }
32
+ }