sequenceserver 2.0.0 → 2.1.0
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- checksums.yaml +4 -4
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +36 -30
- data/lib/sequenceserver/config.rb +49 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/routes.rb +69 -7
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +2 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +1 -0
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +315 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +99 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +41 -0
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
- data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/10.js +1 -1
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column: 2
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});
|
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assert.equal(actual.source, null);
|
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assert.equal(actual.line, null);
|
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|
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assert.equal(actual.column, null);
|
154
|
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};
|
155
|
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exports['test .fromStringWithSourceMap()'] = function(assert, util) {
|
156
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var node = SourceNode.fromStringWithSourceMap(util.testGeneratedCode, new SourceMapConsumer(util.testMap));
|
157
|
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var result = node.toStringWithSourceMap({file: 'min.js'});
|
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var map = result.map;
|
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|
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var code = result.code;
|
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assert.equal(code, util.testGeneratedCode);
|
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|
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assert.ok(map instanceof SourceMapGenerator, 'map instanceof SourceMapGenerator');
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map = map.toJSON();
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assert.equal(map.version, util.testMap.version);
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assert.equal(map.file, util.testMap.file);
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assert.equal(map.mappings, util.testMap.mappings);
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};
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exports['test .fromStringWithSourceMap() empty map'] = function(assert, util) {
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var node = SourceNode.fromStringWithSourceMap(util.testGeneratedCode, new SourceMapConsumer(util.emptyMap));
|
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var result = node.toStringWithSourceMap({file: 'min.js'});
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var map = result.map;
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|
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var code = result.code;
|
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assert.equal(code, util.testGeneratedCode);
|
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assert.ok(map instanceof SourceMapGenerator, 'map instanceof SourceMapGenerator');
|
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map = map.toJSON();
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assert.equal(map.version, util.emptyMap.version);
|
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assert.equal(map.file, util.emptyMap.file);
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assert.equal(map.mappings.length, util.emptyMap.mappings.length);
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assert.equal(map.mappings, util.emptyMap.mappings);
|
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};
|
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exports['test .fromStringWithSourceMap() complex version'] = function(assert, util) {
|
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var input = new SourceNode(null, null, null, ["(function() {\n", " var Test = {};\n", " ", new SourceNode(1, 0, "a.js", "Test.A = { value: 1234 };\n"), " ", new SourceNode(2, 0, "a.js", "Test.A.x = 'xyz';"), "\n", "}());\n", "/* Generated Source */"]);
|
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input = input.toStringWithSourceMap({file: 'foo.js'});
|
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|
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var node = SourceNode.fromStringWithSourceMap(input.code, new SourceMapConsumer(input.map.toString()));
|
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|
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var result = node.toStringWithSourceMap({file: 'foo.js'});
|
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|
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var map = result.map;
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var code = result.code;
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assert.equal(code, input.code);
|
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|
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assert.ok(map instanceof SourceMapGenerator, 'map instanceof SourceMapGenerator');
|
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|
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map = map.toJSON();
|
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|
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var inputMap = input.map.toJSON();
|
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|
-
util.assertEqualMaps(assert, map, inputMap);
|
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|
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};
|
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|
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exports['test .fromStringWithSourceMap() merging duplicate mappings'] = function(assert, util) {
|
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var input = new SourceNode(null, null, null, [new SourceNode(1, 0, "a.js", "(function"), new SourceNode(1, 0, "a.js", "() {\n"), " ", new SourceNode(1, 0, "a.js", "var Test = "), new SourceNode(1, 0, "b.js", "{};\n"), new SourceNode(2, 0, "b.js", "Test"), new SourceNode(2, 0, "b.js", ".A", "A"), new SourceNode(2, 20, "b.js", " = { value: 1234 };\n", "A"), "}());\n", "/* Generated Source */"]);
|
195
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input = input.toStringWithSourceMap({file: 'foo.js'});
|
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|
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var correctMap = new SourceMapGenerator({file: 'foo.js'});
|
197
|
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correctMap.addMapping({
|
198
|
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generated: {
|
199
|
-
line: 1,
|
200
|
-
column: 0
|
201
|
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},
|
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source: 'a.js',
|
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original: {
|
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|
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line: 1,
|
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|
-
column: 0
|
206
|
-
}
|
207
|
-
});
|
208
|
-
correctMap.addMapping({generated: {
|
209
|
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line: 2,
|
210
|
-
column: 0
|
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|
-
}});
|
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|
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correctMap.addMapping({
|
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|
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generated: {
|
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|
-
line: 2,
|
215
|
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column: 2
|
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|
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},
|
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|
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source: 'a.js',
|
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|
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original: {
|
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|
-
line: 1,
|
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|
-
column: 0
|
221
|
-
}
|
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|
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});
|
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correctMap.addMapping({
|
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|
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generated: {
|
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|
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line: 2,
|
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|
-
column: 13
|
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|
-
},
|
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|
-
source: 'b.js',
|
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|
-
original: {
|
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|
-
line: 1,
|
231
|
-
column: 0
|
232
|
-
}
|
233
|
-
});
|
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|
-
correctMap.addMapping({
|
235
|
-
generated: {
|
236
|
-
line: 3,
|
237
|
-
column: 0
|
238
|
-
},
|
239
|
-
source: 'b.js',
|
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|
-
original: {
|
241
|
-
line: 2,
|
242
|
-
column: 0
|
243
|
-
}
|
244
|
-
});
|
245
|
-
correctMap.addMapping({
|
246
|
-
generated: {
|
247
|
-
line: 3,
|
248
|
-
column: 4
|
249
|
-
},
|
250
|
-
source: 'b.js',
|
251
|
-
name: 'A',
|
252
|
-
original: {
|
253
|
-
line: 2,
|
254
|
-
column: 0
|
255
|
-
}
|
256
|
-
});
|
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|
-
correctMap.addMapping({
|
258
|
-
generated: {
|
259
|
-
line: 3,
|
260
|
-
column: 6
|
261
|
-
},
|
262
|
-
source: 'b.js',
|
263
|
-
name: 'A',
|
264
|
-
original: {
|
265
|
-
line: 2,
|
266
|
-
column: 20
|
267
|
-
}
|
268
|
-
});
|
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|
-
correctMap.addMapping({generated: {
|
270
|
-
line: 4,
|
271
|
-
column: 0
|
272
|
-
}});
|
273
|
-
var inputMap = input.map.toJSON();
|
274
|
-
correctMap = correctMap.toJSON();
|
275
|
-
util.assertEqualMaps(assert, correctMap, inputMap);
|
276
|
-
};
|
277
|
-
exports['test setSourceContent with toStringWithSourceMap'] = function(assert, util) {
|
278
|
-
var aNode = new SourceNode(1, 1, 'a.js', 'a');
|
279
|
-
aNode.setSourceContent('a.js', 'someContent');
|
280
|
-
var node = new SourceNode(null, null, null, ['(function () {\n', ' ', aNode, ' ', new SourceNode(1, 1, 'b.js', 'b'), '}());']);
|
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|
-
node.setSourceContent('b.js', 'otherContent');
|
282
|
-
var map = node.toStringWithSourceMap({file: 'foo.js'}).map;
|
283
|
-
assert.ok(map instanceof SourceMapGenerator, 'map instanceof SourceMapGenerator');
|
284
|
-
map = new SourceMapConsumer(map.toString());
|
285
|
-
assert.equal(map.sources.length, 2);
|
286
|
-
assert.equal(map.sources[0], 'a.js');
|
287
|
-
assert.equal(map.sources[1], 'b.js');
|
288
|
-
assert.equal(map.sourcesContent.length, 2);
|
289
|
-
assert.equal(map.sourcesContent[0], 'someContent');
|
290
|
-
assert.equal(map.sourcesContent[1], 'otherContent');
|
291
|
-
};
|
292
|
-
exports['test walkSourceContents'] = function(assert, util) {
|
293
|
-
var aNode = new SourceNode(1, 1, 'a.js', 'a');
|
294
|
-
aNode.setSourceContent('a.js', 'someContent');
|
295
|
-
var node = new SourceNode(null, null, null, ['(function () {\n', ' ', aNode, ' ', new SourceNode(1, 1, 'b.js', 'b'), '}());']);
|
296
|
-
node.setSourceContent('b.js', 'otherContent');
|
297
|
-
var results = [];
|
298
|
-
node.walkSourceContents(function(sourceFile, sourceContent) {
|
299
|
-
results.push([sourceFile, sourceContent]);
|
300
|
-
});
|
301
|
-
assert.equal(results.length, 2);
|
302
|
-
assert.equal(results[0][0], 'a.js');
|
303
|
-
assert.equal(results[0][1], 'someContent');
|
304
|
-
assert.equal(results[1][0], 'b.js');
|
305
|
-
assert.equal(results[1][1], 'otherContent');
|
306
|
-
};
|
307
|
-
});
|
@@ -1,84 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
"format cjs";
|
3
|
-
if (typeof define !== 'function') {
|
4
|
-
var define = require("amdefine")(module, require);
|
5
|
-
}
|
6
|
-
define(function(require, exports, module) {
|
7
|
-
var util = require("../../lib/source-map/util");
|
8
|
-
exports.testGeneratedCode = " ONE.foo=function(a){return baz(a);};\n" + " TWO.inc=function(a){return a+1;};";
|
9
|
-
exports.testMap = {
|
10
|
-
version: 3,
|
11
|
-
file: 'min.js',
|
12
|
-
names: ['bar', 'baz', 'n'],
|
13
|
-
sources: ['one.js', 'two.js'],
|
14
|
-
sourceRoot: '/the/root',
|
15
|
-
mappings: 'CAAC,IAAI,IAAM,SAAUA,GAClB,OAAOC,IAAID;CCDb,IAAI,IAAM,SAAUE,GAClB,OAAOA'
|
16
|
-
};
|
17
|
-
exports.testMapWithSourcesContent = {
|
18
|
-
version: 3,
|
19
|
-
file: 'min.js',
|
20
|
-
names: ['bar', 'baz', 'n'],
|
21
|
-
sources: ['one.js', 'two.js'],
|
22
|
-
sourcesContent: [' ONE.foo = function (bar) {\n' + ' return baz(bar);\n' + ' };', ' TWO.inc = function (n) {\n' + ' return n + 1;\n' + ' };'],
|
23
|
-
sourceRoot: '/the/root',
|
24
|
-
mappings: 'CAAC,IAAI,IAAM,SAAUA,GAClB,OAAOC,IAAID;CCDb,IAAI,IAAM,SAAUE,GAClB,OAAOA'
|
25
|
-
};
|
26
|
-
exports.emptyMap = {
|
27
|
-
version: 3,
|
28
|
-
file: 'min.js',
|
29
|
-
names: [],
|
30
|
-
sources: [],
|
31
|
-
mappings: ''
|
32
|
-
};
|
33
|
-
function assertMapping(generatedLine, generatedColumn, originalSource, originalLine, originalColumn, name, map, assert, dontTestGenerated, dontTestOriginal) {
|
34
|
-
if (!dontTestOriginal) {
|
35
|
-
var origMapping = map.originalPositionFor({
|
36
|
-
line: generatedLine,
|
37
|
-
column: generatedColumn
|
38
|
-
});
|
39
|
-
assert.equal(origMapping.name, name, 'Incorrect name, expected ' + JSON.stringify(name) + ', got ' + JSON.stringify(origMapping.name));
|
40
|
-
assert.equal(origMapping.line, originalLine, 'Incorrect line, expected ' + JSON.stringify(originalLine) + ', got ' + JSON.stringify(origMapping.line));
|
41
|
-
assert.equal(origMapping.column, originalColumn, 'Incorrect column, expected ' + JSON.stringify(originalColumn) + ', got ' + JSON.stringify(origMapping.column));
|
42
|
-
var expectedSource;
|
43
|
-
if (originalSource && map.sourceRoot && originalSource.indexOf(map.sourceRoot) === 0) {
|
44
|
-
expectedSource = originalSource;
|
45
|
-
} else if (originalSource) {
|
46
|
-
expectedSource = map.sourceRoot ? util.join(map.sourceRoot, originalSource) : originalSource;
|
47
|
-
} else {
|
48
|
-
expectedSource = null;
|
49
|
-
}
|
50
|
-
assert.equal(origMapping.source, expectedSource, 'Incorrect source, expected ' + JSON.stringify(expectedSource) + ', got ' + JSON.stringify(origMapping.source));
|
51
|
-
}
|
52
|
-
if (!dontTestGenerated) {
|
53
|
-
var genMapping = map.generatedPositionFor({
|
54
|
-
source: originalSource,
|
55
|
-
line: originalLine,
|
56
|
-
column: originalColumn
|
57
|
-
});
|
58
|
-
assert.equal(genMapping.line, generatedLine, 'Incorrect line, expected ' + JSON.stringify(generatedLine) + ', got ' + JSON.stringify(genMapping.line));
|
59
|
-
assert.equal(genMapping.column, generatedColumn, 'Incorrect column, expected ' + JSON.stringify(generatedColumn) + ', got ' + JSON.stringify(genMapping.column));
|
60
|
-
}
|
61
|
-
}
|
62
|
-
exports.assertMapping = assertMapping;
|
63
|
-
function assertEqualMaps(assert, actualMap, expectedMap) {
|
64
|
-
assert.equal(actualMap.version, expectedMap.version, "version mismatch");
|
65
|
-
assert.equal(actualMap.file, expectedMap.file, "file mismatch");
|
66
|
-
assert.equal(actualMap.names.length, expectedMap.names.length, "names length mismatch: " + actualMap.names.join(", ") + " != " + expectedMap.names.join(", "));
|
67
|
-
for (var i = 0; i < actualMap.names.length; i++) {
|
68
|
-
assert.equal(actualMap.names[i], expectedMap.names[i], "names[" + i + "] mismatch: " + actualMap.names.join(", ") + " != " + expectedMap.names.join(", "));
|
69
|
-
}
|
70
|
-
assert.equal(actualMap.sources.length, expectedMap.sources.length, "sources length mismatch: " + actualMap.sources.join(", ") + " != " + expectedMap.sources.join(", "));
|
71
|
-
for (var i = 0; i < actualMap.sources.length; i++) {
|
72
|
-
assert.equal(actualMap.sources[i], expectedMap.sources[i], "sources[" + i + "] length mismatch: " + actualMap.sources.join(", ") + " != " + expectedMap.sources.join(", "));
|
73
|
-
}
|
74
|
-
assert.equal(actualMap.sourceRoot, expectedMap.sourceRoot, "sourceRoot mismatch: " + actualMap.sourceRoot + " != " + expectedMap.sourceRoot);
|
75
|
-
assert.equal(actualMap.mappings, expectedMap.mappings, "mappings mismatch:\nActual: " + actualMap.mappings + "\nExpected: " + expectedMap.mappings);
|
76
|
-
if (actualMap.sourcesContent) {
|
77
|
-
assert.equal(actualMap.sourcesContent.length, expectedMap.sourcesContent.length, "sourcesContent length mismatch");
|
78
|
-
for (var i = 0; i < actualMap.sourcesContent.length; i++) {
|
79
|
-
assert.equal(actualMap.sourcesContent[i], expectedMap.sourcesContent[i], "sourcesContent[" + i + "] mismatch");
|
80
|
-
}
|
81
|
-
}
|
82
|
-
}
|
83
|
-
exports.assertEqualMaps = assertEqualMaps;
|
84
|
-
});
|
@@ -1 +0,0 @@
|
|
1
|
-
module.exports = require("npm:source-map@0.1.31/lib/source-map");
|
@@ -1,15 +0,0 @@
|
|
1
|
-
Apache License, Version 2.0
|
2
|
-
|
3
|
-
Copyright (c) 2011 Dominic Tarr
|
4
|
-
|
5
|
-
Licensed under the Apache License, Version 2.0 (the "License");
|
6
|
-
you may not use this file except in compliance with the License.
|
7
|
-
You may obtain a copy of the License at
|
8
|
-
|
9
|
-
http://www.apache.org/licenses/LICENSE-2.0
|
10
|
-
|
11
|
-
Unless required by applicable law or agreed to in writing, software
|
12
|
-
distributed under the License is distributed on an "AS IS" BASIS,
|
13
|
-
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
14
|
-
See the License for the specific language governing permissions and
|
15
|
-
limitations under the License.
|
@@ -1,24 +0,0 @@
|
|
1
|
-
The MIT License
|
2
|
-
|
3
|
-
Copyright (c) 2011 Dominic Tarr
|
4
|
-
|
5
|
-
Permission is hereby granted, free of charge,
|
6
|
-
to any person obtaining a copy of this software and
|
7
|
-
associated documentation files (the "Software"), to
|
8
|
-
deal in the Software without restriction, including
|
9
|
-
without limitation the rights to use, copy, modify,
|
10
|
-
merge, publish, distribute, sublicense, and/or sell
|
11
|
-
copies of the Software, and to permit persons to whom
|
12
|
-
the Software is furnished to do so,
|
13
|
-
subject to the following conditions:
|
14
|
-
|
15
|
-
The above copyright notice and this permission notice
|
16
|
-
shall be included in all copies or substantial portions of the Software.
|
17
|
-
|
18
|
-
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
19
|
-
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
|
20
|
-
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
|
21
|
-
IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR
|
22
|
-
ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
|
23
|
-
TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
|
24
|
-
SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
|
@@ -1,93 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var Stream = require("stream");
|
4
|
-
exports = module.exports = through;
|
5
|
-
through.through = through;
|
6
|
-
function through(write, end, opts) {
|
7
|
-
write = write || function(data) {
|
8
|
-
this.queue(data);
|
9
|
-
};
|
10
|
-
end = end || function() {
|
11
|
-
this.queue(null);
|
12
|
-
};
|
13
|
-
var ended = false,
|
14
|
-
destroyed = false,
|
15
|
-
buffer = [],
|
16
|
-
_ended = false;
|
17
|
-
var stream = new Stream();
|
18
|
-
stream.readable = stream.writable = true;
|
19
|
-
stream.paused = false;
|
20
|
-
stream.autoDestroy = !(opts && opts.autoDestroy === false);
|
21
|
-
stream.write = function(data) {
|
22
|
-
write.call(this, data);
|
23
|
-
return !stream.paused;
|
24
|
-
};
|
25
|
-
function drain() {
|
26
|
-
while (buffer.length && !stream.paused) {
|
27
|
-
var data = buffer.shift();
|
28
|
-
if (null === data)
|
29
|
-
return stream.emit('end');
|
30
|
-
else
|
31
|
-
stream.emit('data', data);
|
32
|
-
}
|
33
|
-
}
|
34
|
-
stream.queue = stream.push = function(data) {
|
35
|
-
if (_ended)
|
36
|
-
return stream;
|
37
|
-
if (data === null)
|
38
|
-
_ended = true;
|
39
|
-
buffer.push(data);
|
40
|
-
drain();
|
41
|
-
return stream;
|
42
|
-
};
|
43
|
-
stream.on('end', function() {
|
44
|
-
stream.readable = false;
|
45
|
-
if (!stream.writable && stream.autoDestroy)
|
46
|
-
process.nextTick(function() {
|
47
|
-
stream.destroy();
|
48
|
-
});
|
49
|
-
});
|
50
|
-
function _end() {
|
51
|
-
stream.writable = false;
|
52
|
-
end.call(stream);
|
53
|
-
if (!stream.readable && stream.autoDestroy)
|
54
|
-
stream.destroy();
|
55
|
-
}
|
56
|
-
stream.end = function(data) {
|
57
|
-
if (ended)
|
58
|
-
return;
|
59
|
-
ended = true;
|
60
|
-
if (arguments.length)
|
61
|
-
stream.write(data);
|
62
|
-
_end();
|
63
|
-
return stream;
|
64
|
-
};
|
65
|
-
stream.destroy = function() {
|
66
|
-
if (destroyed)
|
67
|
-
return;
|
68
|
-
destroyed = true;
|
69
|
-
ended = true;
|
70
|
-
buffer.length = 0;
|
71
|
-
stream.writable = stream.readable = false;
|
72
|
-
stream.emit('close');
|
73
|
-
return stream;
|
74
|
-
};
|
75
|
-
stream.pause = function() {
|
76
|
-
if (stream.paused)
|
77
|
-
return;
|
78
|
-
stream.paused = true;
|
79
|
-
return stream;
|
80
|
-
};
|
81
|
-
stream.resume = function() {
|
82
|
-
if (stream.paused) {
|
83
|
-
stream.paused = false;
|
84
|
-
stream.emit('resume');
|
85
|
-
}
|
86
|
-
drain();
|
87
|
-
if (!stream.paused)
|
88
|
-
stream.emit('drain');
|
89
|
-
return stream;
|
90
|
-
};
|
91
|
-
return stream;
|
92
|
-
}
|
93
|
-
})(require("process"));
|
@@ -1,36 +0,0 @@
|
|
1
|
-
{
|
2
|
-
"name": "through",
|
3
|
-
"version": "2.3.8",
|
4
|
-
"description": "simplified stream construction",
|
5
|
-
"main": "index.js",
|
6
|
-
"scripts": {
|
7
|
-
"test": "set -e; for t in test/*.js; do node $t; done"
|
8
|
-
},
|
9
|
-
"devDependencies": {
|
10
|
-
"stream-spec": "~0.3.5",
|
11
|
-
"tape": "~2.3.2",
|
12
|
-
"from": "~0.1.3"
|
13
|
-
},
|
14
|
-
"keywords": [
|
15
|
-
"stream",
|
16
|
-
"streams",
|
17
|
-
"user-streams",
|
18
|
-
"pipe"
|
19
|
-
],
|
20
|
-
"author": "Dominic Tarr <dominic.tarr@gmail.com> (dominictarr.com)",
|
21
|
-
"license": "MIT",
|
22
|
-
"repository": {
|
23
|
-
"type": "git",
|
24
|
-
"url": "https://github.com/dominictarr/through.git"
|
25
|
-
},
|
26
|
-
"homepage": "https://github.com/dominictarr/through",
|
27
|
-
"testling": {
|
28
|
-
"browsers": [
|
29
|
-
"ie/8..latest",
|
30
|
-
"ff/15..latest",
|
31
|
-
"chrome/20..latest",
|
32
|
-
"safari/5.1..latest"
|
33
|
-
],
|
34
|
-
"files": "test/*.js"
|
35
|
-
}
|
36
|
-
}
|
@@ -1,64 +0,0 @@
|
|
1
|
-
#through
|
2
|
-
|
3
|
-
[![build status](https://secure.travis-ci.org/dominictarr/through.png)](http://travis-ci.org/dominictarr/through)
|
4
|
-
[![testling badge](https://ci.testling.com/dominictarr/through.png)](https://ci.testling.com/dominictarr/through)
|
5
|
-
|
6
|
-
Easy way to create a `Stream` that is both `readable` and `writable`.
|
7
|
-
|
8
|
-
* Pass in optional `write` and `end` methods.
|
9
|
-
* `through` takes care of pause/resume logic if you use `this.queue(data)` instead of `this.emit('data', data)`.
|
10
|
-
* Use `this.pause()` and `this.resume()` to manage flow.
|
11
|
-
* Check `this.paused` to see current flow state. (`write` always returns `!this.paused`).
|
12
|
-
|
13
|
-
This function is the basis for most of the synchronous streams in
|
14
|
-
[event-stream](http://github.com/dominictarr/event-stream).
|
15
|
-
|
16
|
-
``` js
|
17
|
-
var through = require('through')
|
18
|
-
|
19
|
-
through(function write(data) {
|
20
|
-
this.queue(data) //data *must* not be null
|
21
|
-
},
|
22
|
-
function end () { //optional
|
23
|
-
this.queue(null)
|
24
|
-
})
|
25
|
-
```
|
26
|
-
|
27
|
-
Or, can also be used _without_ buffering on pause, use `this.emit('data', data)`,
|
28
|
-
and this.emit('end')
|
29
|
-
|
30
|
-
``` js
|
31
|
-
var through = require('through')
|
32
|
-
|
33
|
-
through(function write(data) {
|
34
|
-
this.emit('data', data)
|
35
|
-
//this.pause()
|
36
|
-
},
|
37
|
-
function end () { //optional
|
38
|
-
this.emit('end')
|
39
|
-
})
|
40
|
-
```
|
41
|
-
|
42
|
-
## Extended Options
|
43
|
-
|
44
|
-
You will probably not need these 99% of the time.
|
45
|
-
|
46
|
-
### autoDestroy=false
|
47
|
-
|
48
|
-
By default, `through` emits close when the writable
|
49
|
-
and readable side of the stream has ended.
|
50
|
-
If that is not desired, set `autoDestroy=false`.
|
51
|
-
|
52
|
-
``` js
|
53
|
-
var through = require('through')
|
54
|
-
|
55
|
-
//like this
|
56
|
-
var ts = through(write, end, {autoDestroy: false})
|
57
|
-
//or like this
|
58
|
-
var ts = through(write, end)
|
59
|
-
ts.autoDestroy = false
|
60
|
-
```
|
61
|
-
|
62
|
-
## License
|
63
|
-
|
64
|
-
MIT / Apache2
|
@@ -1,26 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
var from = require("from");
|
3
|
-
var through = require("../index");
|
4
|
-
var tape = require("tape");
|
5
|
-
tape('simple async example', function(t) {
|
6
|
-
var n = 0,
|
7
|
-
expected = [1, 2, 3, 4, 5],
|
8
|
-
actual = [];
|
9
|
-
from(expected).pipe(through(function(data) {
|
10
|
-
this.pause();
|
11
|
-
n++;
|
12
|
-
setTimeout(function() {
|
13
|
-
console.log('pushing data', data);
|
14
|
-
this.push(data);
|
15
|
-
this.resume();
|
16
|
-
}.bind(this), 300);
|
17
|
-
})).pipe(through(function(data) {
|
18
|
-
console.log('pushing data second time', data);
|
19
|
-
this.push(data);
|
20
|
-
})).on('data', function(d) {
|
21
|
-
actual.push(d);
|
22
|
-
}).on('end', function() {
|
23
|
-
t.deepEqual(actual, expected);
|
24
|
-
t.end();
|
25
|
-
});
|
26
|
-
});
|
@@ -1,26 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
var test = require("tape");
|
3
|
-
var through = require("../index");
|
4
|
-
test('end before close', function(assert) {
|
5
|
-
var ts = through();
|
6
|
-
ts.autoDestroy = false;
|
7
|
-
var ended = false,
|
8
|
-
closed = false;
|
9
|
-
ts.on('end', function() {
|
10
|
-
assert.ok(!closed);
|
11
|
-
ended = true;
|
12
|
-
});
|
13
|
-
ts.on('close', function() {
|
14
|
-
assert.ok(ended);
|
15
|
-
closed = true;
|
16
|
-
});
|
17
|
-
ts.write(1);
|
18
|
-
ts.write(2);
|
19
|
-
ts.write(3);
|
20
|
-
ts.end();
|
21
|
-
assert.ok(ended);
|
22
|
-
assert.notOk(closed);
|
23
|
-
ts.destroy();
|
24
|
-
assert.ok(closed);
|
25
|
-
assert.end();
|
26
|
-
});
|