sequenceserver 2.0.0 → 2.1.0

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Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
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  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
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  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
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  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
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  660. /data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/index.js +0 -0
  661. /data/public/vendor/npm/{readable-stream@1.1.13 → assert@1.5.0}/LICENSE +0 -0
  662. /data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/LICENSE +0 -0
  663. /data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/README.md +0 -0
  664. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/LICENSE +0 -0
  665. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/index.js +0 -0
  666. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/README.md +0 -0
  667. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/float.patch +0 -0
@@ -0,0 +1,67 @@
1
+ # vm-browserify
2
+
3
+ emulate node's vm module for the browser
4
+
5
+ [![testling badge](https://ci.testling.com/substack/vm-browserify.png)](https://ci.testling.com/substack/vm-browserify)
6
+
7
+ # example
8
+
9
+ Just write some client-side javascript:
10
+
11
+ ``` js
12
+ var vm = require('vm');
13
+
14
+ $(function () {
15
+ var res = vm.runInNewContext('a + 5', { a : 100 });
16
+ $('#res').text(res);
17
+ });
18
+ ```
19
+
20
+ compile it with [browserify](http://github.com/substack/node-browserify):
21
+
22
+ ```
23
+ browserify entry.js -o bundle.js
24
+ ```
25
+
26
+ then whip up some html:
27
+
28
+ ``` html
29
+ <html>
30
+ <head>
31
+ <script src="http://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.min.js"></script>
32
+ <script src="/bundle.js"></script>
33
+ </head>
34
+ <body>
35
+ result = <span id="res"></span>
36
+ </body>
37
+ </html>
38
+ ```
39
+
40
+ and when you load the page you should see:
41
+
42
+ ```
43
+ result = 105
44
+ ```
45
+
46
+ # methods
47
+
48
+ ## vm.runInNewContext(code, context={})
49
+
50
+ Evaluate some `code` in a new iframe with a `context`.
51
+
52
+ Contexts are like wrapping your code in a `with()` except slightly less terrible
53
+ because the code is sandboxed into a new iframe.
54
+
55
+ # install
56
+
57
+ This module is depended upon by browserify, so you should just be able to
58
+ `require('vm')` and it will just work. However if you want to use this module
59
+ directly you can install it with [npm](http://npmjs.org):
60
+
61
+ ```
62
+ npm install vm-browserify
63
+ ```
64
+
65
+ # license
66
+
67
+ MIT
@@ -0,0 +1,34 @@
1
+ /* */
2
+ var test = require('tape');
3
+ var vm = require('../index');
4
+ test('vmRunInNewContext', function(t) {
5
+ t.plan(6);
6
+ t.equal(vm.runInNewContext('a + 5', {a: 100}), 105);
7
+ (function() {
8
+ var vars = {x: 10};
9
+ t.equal(vm.runInNewContext('x++', vars), 10);
10
+ t.equal(vars.x, 11);
11
+ })();
12
+ (function() {
13
+ var vars = {x: 10};
14
+ t.equal(vm.runInNewContext('var y = 3; y + x++', vars), 13);
15
+ t.equal(vars.x, 11);
16
+ t.equal(vars.y, 3);
17
+ })();
18
+ t.end();
19
+ });
20
+ test('vmRunInContext', function(t) {
21
+ t.plan(2);
22
+ var context = vm.createContext({foo: 1});
23
+ vm.runInContext('var x = 1', context);
24
+ t.deepEqual(context, {
25
+ foo: 1,
26
+ x: 1
27
+ });
28
+ vm.runInContext('var y = 1', context);
29
+ t.deepEqual(context, {
30
+ foo: 1,
31
+ x: 1,
32
+ y: 1
33
+ });
34
+ });
@@ -0,0 +1 @@
1
+ module.exports = require("npm:vm-browserify@0.0.4/index.js");
@@ -161,7 +161,7 @@ module.exports = function(grunt) {
161
161
  }
162
162
  });
163
163
  grunt.registerTask('webshimscombos', 'create combos from polyfiller.js.', function() {
164
- var phantomjs = require("phantomjs");
164
+ var phantomjs = require('phantomjs');
165
165
  var done = this.async();
166
166
  var combos = {};
167
167
  grunt.util.spawn({
@@ -200,7 +200,7 @@ module.exports = function(grunt) {
200
200
  });
201
201
  grunt.registerTask('cfgcopymin', 'config min and copy tasks.', function() {
202
202
  var files = getFiles('src', false, '**', 'demos/js-webshim/dev', '*.js');
203
- var path = require("path");
203
+ var path = require('path');
204
204
  var copyTask = {};
205
205
  var minTask = {};
206
206
  var minPath,
@@ -263,8 +263,8 @@ module.exports = function(grunt) {
263
263
  grunt.registerTask('dev', ['webshimscombos', 'concat', 'cfgcopymin', 'copy:main', 'sass', 'watch']);
264
264
  grunt.registerTask('release', ['versiontest', 'clean', 'default', 'bytesize']);
265
265
  function getFiles(srcdir, destdir, wildcard, compareDir, compareMatch) {
266
- var path = require("path");
267
- var fs = require("fs");
266
+ var path = require('path');
267
+ var fs = require('fs');
268
268
  var existsSync = fs.existsSync || path.existsSync;
269
269
  var files = {};
270
270
  grunt.file.expand({cwd: srcdir}, wildcard).forEach(function(relpath) {
@@ -1,5 +1,5 @@
1
1
  /* */
2
- var fs = require("fs");
2
+ var fs = require('fs');
3
3
  var url = phantom.args[0];
4
4
  var last = new Date();
5
5
  function sendMessage(args) {
@@ -9,7 +9,7 @@ function sendMessage(args) {
9
9
  setInterval(function() {
10
10
  sendMessage(['done_timeout']);
11
11
  }, 5000);
12
- var page = require("webpage").create();
12
+ var page = require('webpage').create();
13
13
  page.onAlert = function(args) {
14
14
  sendMessage(JSON.parse(args));
15
15
  };
@@ -2287,4 +2287,4 @@
2287
2287
  }
2288
2288
  document.createElement('img').src = webshims.cfg.basePath + 'jpicker/images/Maps.png';
2289
2289
  });
2290
- })(require("process"));
2290
+ })(require('process'));
@@ -3515,4 +3515,4 @@
3515
3515
  }
3516
3516
  })();
3517
3517
  });
3518
- })(require("process"));
3518
+ })(require('process'));
@@ -2373,4 +2373,4 @@
2373
2373
  }
2374
2374
  })();
2375
2375
  });
2376
- })(require("process"));
2376
+ })(require('process'));
@@ -2876,4 +2876,4 @@
2876
2876
  }
2877
2877
  })();
2878
2878
  });
2879
- })(require("process"));
2879
+ })(require('process'));
@@ -3059,4 +3059,4 @@
3059
3059
  }
3060
3060
  })();
3061
3061
  });
3062
- })(require("process"));
3062
+ })(require('process'));
@@ -3312,4 +3312,4 @@
3312
3312
  initializeDatalist();
3313
3313
  })();
3314
3314
  });
3315
- })(require("process"));
3315
+ })(require('process'));
@@ -3768,4 +3768,4 @@
3768
3768
  initializeDatalist();
3769
3769
  })();
3770
3770
  });
3771
- })(require("process"));
3771
+ })(require('process'));
@@ -1663,4 +1663,4 @@
1663
1663
  };
1664
1664
  main();
1665
1665
  });
1666
- })(require("process"));
1666
+ })(require('process'));
@@ -616,4 +616,4 @@
616
616
  webshims.isReady('canvas', true);
617
617
  })(document);
618
618
  }
619
- })(require("process"));
619
+ })(require('process'));
@@ -1773,4 +1773,4 @@
1773
1773
  }
1774
1774
  })();
1775
1775
  });
1776
- })(require("process"));
1776
+ })(require('process'));
@@ -4505,4 +4505,4 @@
4505
4505
  }
4506
4506
  return o;
4507
4507
  })(this);
4508
- })(require("process"));
4508
+ })(require('process'));
@@ -3189,4 +3189,4 @@
3189
3189
  }
3190
3190
  return o;
3191
3191
  })(this);
3192
- })(require("process"));
3192
+ })(require('process'));
@@ -1264,4 +1264,4 @@
1264
1264
  webshims.isReady('sizzle', true);
1265
1265
  })(window.webshims && window.webshims.$ || window.jQuery, window.Sizzle);
1266
1266
  })(window);
1267
- })(require("process"));
1267
+ })(require('process'));
@@ -1118,4 +1118,4 @@
1118
1118
  };
1119
1119
  k();
1120
1120
  });
1121
- })(require("process"));
1121
+ })(require('process'));
@@ -2287,4 +2287,4 @@
2287
2287
  }
2288
2288
  document.createElement('img').src = webshims.cfg.basePath + 'jpicker/images/Maps.png';
2289
2289
  });
2290
- })(require("process"));
2290
+ })(require('process'));
@@ -3515,4 +3515,4 @@
3515
3515
  }
3516
3516
  })();
3517
3517
  });
3518
- })(require("process"));
3518
+ })(require('process'));
@@ -2373,4 +2373,4 @@
2373
2373
  }
2374
2374
  })();
2375
2375
  });
2376
- })(require("process"));
2376
+ })(require('process'));
@@ -2876,4 +2876,4 @@
2876
2876
  }
2877
2877
  })();
2878
2878
  });
2879
- })(require("process"));
2879
+ })(require('process'));
@@ -3059,4 +3059,4 @@
3059
3059
  }
3060
3060
  })();
3061
3061
  });
3062
- })(require("process"));
3062
+ })(require('process'));
@@ -3312,4 +3312,4 @@
3312
3312
  initializeDatalist();
3313
3313
  })();
3314
3314
  });
3315
- })(require("process"));
3315
+ })(require('process'));
@@ -3768,4 +3768,4 @@
3768
3768
  initializeDatalist();
3769
3769
  })();
3770
3770
  });
3771
- })(require("process"));
3771
+ })(require('process'));
@@ -1663,4 +1663,4 @@
1663
1663
  };
1664
1664
  main();
1665
1665
  });
1666
- })(require("process"));
1666
+ })(require('process'));
@@ -616,4 +616,4 @@
616
616
  webshims.isReady('canvas', true);
617
617
  })(document);
618
618
  }
619
- })(require("process"));
619
+ })(require('process'));
@@ -1773,4 +1773,4 @@
1773
1773
  }
1774
1774
  })();
1775
1775
  });
1776
- })(require("process"));
1776
+ })(require('process'));
@@ -4505,4 +4505,4 @@
4505
4505
  }
4506
4506
  return o;
4507
4507
  })(this);
4508
- })(require("process"));
4508
+ })(require('process'));
@@ -3189,4 +3189,4 @@
3189
3189
  }
3190
3190
  return o;
3191
3191
  })(this);
3192
- })(require("process"));
3192
+ })(require('process'));
@@ -1264,4 +1264,4 @@
1264
1264
  webshims.isReady('sizzle', true);
1265
1265
  })(window.webshims && window.webshims.$ || window.jQuery, window.Sizzle);
1266
1266
  })(window);
1267
- })(require("process"));
1267
+ })(require('process'));
@@ -4051,4 +4051,4 @@
4051
4051
  return p;
4052
4052
  });
4053
4053
  })(window);
4054
- })(require("process"));
4054
+ })(require('process'));
@@ -1095,4 +1095,4 @@
1095
1095
  equal(jQuery.camelCase(key), val, "Converts: " + key + " => " + val);
1096
1096
  });
1097
1097
  });
1098
- })(require("process"));
1098
+ })(require('process'));