sequenceserver 2.0.0 → 2.1.0
Sign up to get free protection for your applications and to get access to all the features.
Potentially problematic release.
This version of sequenceserver might be problematic. Click here for more details.
- checksums.yaml +4 -4
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +36 -30
- data/lib/sequenceserver/config.rb +49 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/routes.rb +69 -7
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +2 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +1 -0
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +315 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +99 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +41 -0
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
- data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/11.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/17.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/5.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/9.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/10.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/11.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/17.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/5.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/9.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/tests/dist/jquery.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/tests/jquery/unit/core.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/tests/jquery/unit/event.js +1388 -711
- data/public/vendor/npm/webshim@1.15.8/tests/qunit/qunit.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/tests/test-ext/jquery-1-custom.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/tests/test-ext/jquery-2-custom.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/tests/test-ext/punycode.js +1 -1
- data/public/vendor/system-polyfills.js +865 -1
- data/views/blastn_options.erb +291 -0
- data/views/blastp_options.erb +288 -0
- data/views/blastx_options.erb +318 -0
- data/views/error.erb +12 -0
- data/views/layout.erb +2 -30
- data/views/report.erb +0 -8
- data/views/search.erb +16 -9
- data/views/tblastn_options.erb +266 -0
- data/views/tblastx_options.erb +291 -0
- metadata +318 -439
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.0.js +0 -1
- data/public/vendor/github/jspm/nodelibs-module@0.1.0/index.js +0 -1
- data/public/vendor/github/jspm/nodelibs-module@0.1.0.js +0 -1
- data/public/vendor/github/jspm/nodelibs-process@0.1.1.js +0 -1
- data/public/vendor/npm/amdefine@1.0.0/LICENSE +0 -58
- data/public/vendor/npm/amdefine@1.0.0/README.md +0 -171
- data/public/vendor/npm/amdefine@1.0.0/amdefine.js +0 -200
- data/public/vendor/npm/amdefine@1.0.0/intercept.js +0 -24
- data/public/vendor/npm/amdefine@1.0.0/package.json +0 -16
- data/public/vendor/npm/amdefine@1.0.0.js +0 -1
- data/public/vendor/npm/base62@0.1.1/LICENSE +0 -20
- data/public/vendor/npm/base62@0.1.1/Readme.md +0 -30
- data/public/vendor/npm/base62@0.1.1/base62.js +0 -28
- data/public/vendor/npm/base62@0.1.1/package.json +0 -21
- data/public/vendor/npm/base62@0.1.1/test/test.js +0 -13
- data/public/vendor/npm/base62@0.1.1.js +0 -1
- data/public/vendor/npm/base64-js@0.0.8/lib/b64.js +0 -125
- data/public/vendor/npm/base64-js@0.0.8/package.json +0 -34
- data/public/vendor/npm/base64-js@0.0.8/test/convert.js +0 -39
- data/public/vendor/npm/base64-js@0.0.8/test/url-safe.js +0 -15
- data/public/vendor/npm/base64-js@0.0.8.js +0 -1
- data/public/vendor/npm/buffer@3.4.3/index.js +0 -1533
- data/public/vendor/npm/buffer@3.4.3/package.json +0 -67
- data/public/vendor/npm/buffer@3.4.3/test/_polyfill.js +0 -152
- data/public/vendor/npm/buffer@3.4.3/test/base64.js +0 -33
- data/public/vendor/npm/buffer@3.4.3/test/basic.js +0 -58
- data/public/vendor/npm/buffer@3.4.3/test/compare.js +0 -53
- data/public/vendor/npm/buffer@3.4.3/test/constructor.js +0 -132
- data/public/vendor/npm/buffer@3.4.3/test/deprecated.js +0 -21
- data/public/vendor/npm/buffer@3.4.3/test/from-string.js +0 -105
- data/public/vendor/npm/buffer@3.4.3/test/methods.js +0 -109
- data/public/vendor/npm/buffer@3.4.3/test/node/README.txt +0 -1
- data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-ascii.js +0 -20
- data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-bytelength.js +0 -38
- data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-concat.js +0 -26
- data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-indexof.js +0 -78
- data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer-inspect.js +0 -31
- data/public/vendor/npm/buffer@3.4.3/test/node/test-buffer.js +0 -804
- data/public/vendor/npm/buffer@3.4.3/test/node-es6/README.txt +0 -1
- data/public/vendor/npm/buffer@3.4.3/test/node-es6/test-buffer-arraybuffer.js +0 -37
- data/public/vendor/npm/buffer@3.4.3/test/node-es6/test-buffer-iterator.js +0 -32
- data/public/vendor/npm/buffer@3.4.3/test/slice.js +0 -33
- data/public/vendor/npm/buffer@3.4.3/test/static.js +0 -32
- data/public/vendor/npm/buffer@3.4.3/test/to-string.js +0 -106
- data/public/vendor/npm/buffer@3.4.3/test/write.js +0 -90
- data/public/vendor/npm/buffer@3.4.3.js +0 -1
- data/public/vendor/npm/core-util-is@1.0.1/float.patch +0 -604
- data/public/vendor/npm/core-util-is@1.0.1/lib/util.js +0 -66
- data/public/vendor/npm/core-util-is@1.0.1/util.js +0 -66
- data/public/vendor/npm/core-util-is@1.0.1.js +0 -1
- data/public/vendor/npm/envify@3.4.0/README.md +0 -145
- data/public/vendor/npm/envify@3.4.0/bin/envify +0 -17
- data/public/vendor/npm/envify@3.4.0/custom.js +0 -33
- data/public/vendor/npm/envify@3.4.0/index.js +0 -4
- data/public/vendor/npm/envify@3.4.0/package.json +0 -35
- data/public/vendor/npm/envify@3.4.0/visitors.js +0 -33
- data/public/vendor/npm/envify@3.4.0.js +0 -1
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/bin/esparse.js +0 -90
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/bin/esvalidate.js +0 -145
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/esprima.js +0 -6191
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/package.json +0 -72
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/compat.js +0 -167
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/reflect.js +0 -421
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/run.js +0 -34
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/runner.js +0 -418
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb/test/test.js +0 -34730
- data/public/vendor/npm/esprima-fb@13001.1001.0-dev-harmony-fb.js +0 -1
- data/public/vendor/npm/ieee754@1.1.6/LICENSE +0 -56
- data/public/vendor/npm/ieee754@1.1.6/package.json +0 -34
- data/public/vendor/npm/ieee754@1.1.6/test/basic.js +0 -20
- data/public/vendor/npm/ieee754@1.1.6.js +0 -1
- data/public/vendor/npm/is-array@1.0.1/History.md +0 -11
- data/public/vendor/npm/is-array@1.0.1/Readme.md +0 -27
- data/public/vendor/npm/is-array@1.0.1/component.json +0 -13
- data/public/vendor/npm/is-array@1.0.1/index.js +0 -33
- data/public/vendor/npm/is-array@1.0.1/package.json +0 -10
- data/public/vendor/npm/is-array@1.0.1/test/test.html +0 -46
- data/public/vendor/npm/is-array@1.0.1.js +0 -1
- data/public/vendor/npm/jstransform@10.1.0/LICENSE +0 -201
- data/public/vendor/npm/jstransform@10.1.0/README.md +0 -98
- data/public/vendor/npm/jstransform@10.1.0/jestEnvironment.js +0 -3
- data/public/vendor/npm/jstransform@10.1.0/jestPreprocessor.js +0 -8
- data/public/vendor/npm/jstransform@10.1.0/package.json +0 -52
- data/public/vendor/npm/jstransform@10.1.0/polyfill/Object.es6.js +0 -54
- data/public/vendor/npm/jstransform@10.1.0/src/__tests__/jstransform-test.js +0 -246
- data/public/vendor/npm/jstransform@10.1.0/src/__tests__/jstransform-utils-test.js +0 -31
- data/public/vendor/npm/jstransform@10.1.0/src/docblock.js +0 -86
- data/public/vendor/npm/jstransform@10.1.0/src/jstransform.js +0 -180
- data/public/vendor/npm/jstransform@10.1.0/src/utils.js +0 -386
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-arrow-function-visitors-test.js +0 -57
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-call-spread-visitors-test.js +0 -46
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-class-visitors-test.js +0 -463
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-destructuring-visitors-test.js +0 -144
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-es7-object-integration-test.js +0 -40
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-object-concise-method-visitors-test.js +0 -47
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-object-short-notation-visitors-test.js +0 -33
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-rest-param-visitors-test.js +0 -119
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es6-template-visitors-test.js +0 -138
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es7-rest-property-helpers-test.js +0 -47
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/es7-spread-property-visitors-test.js +0 -90
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/gen/generate-type-syntax-test.js +0 -40
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/gen/type-syntax-test.rec.js +0 -846
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/reserved-words-test.js +0 -40
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-alias-syntax-test.js +0 -34
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-class-syntax-test.js +0 -105
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-function-syntax-test.js +0 -126
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-interface-syntax-test.js +0 -29
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-object-method-syntax-test.js +0 -65
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-pattern-syntax-test.js +0 -45
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-syntax-test.js +0 -46
- data/public/vendor/npm/jstransform@10.1.0/visitors/__tests__/type-variable-declaration-syntax-test.js +0 -102
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-arrow-function-visitors.js +0 -66
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-call-spread-visitors.js +0 -72
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-class-visitors.js +0 -316
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-destructuring-visitors.js +0 -135
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-object-concise-method-visitors.js +0 -28
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-object-short-notation-visitors.js +0 -12
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-rest-param-visitors.js +0 -45
- data/public/vendor/npm/jstransform@10.1.0/visitors/es6-template-visitors.js +0 -90
- data/public/vendor/npm/jstransform@10.1.0/visitors/es7-rest-property-helpers.js +0 -80
- data/public/vendor/npm/jstransform@10.1.0/visitors/es7-spread-property-visitors.js +0 -56
- data/public/vendor/npm/jstransform@10.1.0/visitors/reserved-words-helper.js +0 -74
- data/public/vendor/npm/jstransform@10.1.0/visitors/reserved-words-visitors.js +0 -30
- data/public/vendor/npm/jstransform@10.1.0/visitors/type-syntax.js +0 -118
- data/public/vendor/npm/jstransform@10.1.0.js +0 -1
- data/public/vendor/npm/process@0.10.1/browser.js +0 -58
- data/public/vendor/npm/process@0.10.1.js +0 -1
- data/public/vendor/npm/qs@2.4.1/test/stringify.js +0 -162
- data/public/vendor/npm/react@0.13.3/README.md +0 -20
- data/public/vendor/npm/react@0.13.3/addons.js +0 -2
- data/public/vendor/npm/react@0.13.3/dist/JSXTransformer.js +0 -11346
- data/public/vendor/npm/react@0.13.3/dist/react-with-addons.js +0 -10483
- data/public/vendor/npm/react@0.13.3/dist/react-with-addons.min.js +0 -7297
- data/public/vendor/npm/react@0.13.3/dist/react.js +0 -9468
- data/public/vendor/npm/react@0.13.3/dist/react.min.js +0 -6764
- data/public/vendor/npm/react@0.13.3/lib/AutoFocusMixin.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/BeforeInputEventPlugin.js +0 -197
- data/public/vendor/npm/react@0.13.3/lib/CSSCore.js +0 -39
- data/public/vendor/npm/react@0.13.3/lib/CSSProperty.js +0 -123
- data/public/vendor/npm/react@0.13.3/lib/CSSPropertyOperations.js +0 -103
- data/public/vendor/npm/react@0.13.3/lib/CallbackQueue.js +0 -43
- data/public/vendor/npm/react@0.13.3/lib/ChangeEventPlugin.js +0 -174
- data/public/vendor/npm/react@0.13.3/lib/ClientReactRootIndex.js +0 -23
- data/public/vendor/npm/react@0.13.3/lib/DOMChildrenOperations.js +0 -57
- data/public/vendor/npm/react@0.13.3/lib/DOMProperty.js +0 -96
- data/public/vendor/npm/react@0.13.3/lib/DOMPropertyOperations.js +0 -99
- data/public/vendor/npm/react@0.13.3/lib/Danger.js +0 -67
- data/public/vendor/npm/react@0.13.3/lib/DefaultEventPluginOrder.js +0 -5
- data/public/vendor/npm/react@0.13.3/lib/EnterLeaveEventPlugin.js +0 -69
- data/public/vendor/npm/react@0.13.3/lib/EventConstants.js +0 -55
- data/public/vendor/npm/react@0.13.3/lib/EventListener.js +0 -34
- data/public/vendor/npm/react@0.13.3/lib/EventPluginHub.js +0 -103
- data/public/vendor/npm/react@0.13.3/lib/EventPluginRegistry.js +0 -115
- data/public/vendor/npm/react@0.13.3/lib/EventPluginUtils.js +0 -121
- data/public/vendor/npm/react@0.13.3/lib/EventPropagators.js +0 -62
- data/public/vendor/npm/react@0.13.3/lib/ExecutionEnvironment.js +0 -42
- data/public/vendor/npm/react@0.13.3/lib/FallbackCompositionState.js +0 -45
- data/public/vendor/npm/react@0.13.3/lib/HTMLDOMPropertyConfig.js +0 -155
- data/public/vendor/npm/react@0.13.3/lib/LinkedStateMixin.js +0 -8
- data/public/vendor/npm/react@0.13.3/lib/LinkedValueUtils.js +0 -74
- data/public/vendor/npm/react@0.13.3/lib/LocalEventTrapMixin.js +0 -26
- data/public/vendor/npm/react@0.13.3/lib/MobileSafariClickEventPlugin.js +0 -17
- data/public/vendor/npm/react@0.13.3/lib/Object.assign.js +0 -47
- data/public/vendor/npm/react@0.13.3/lib/PooledClass.js +0 -75
- data/public/vendor/npm/react@0.13.3/lib/React.js +0 -93
- data/public/vendor/npm/react@0.13.3/lib/ReactBrowserComponentMixin.js +0 -7
- data/public/vendor/npm/react@0.13.3/lib/ReactBrowserEventEmitter.js +0 -136
- data/public/vendor/npm/react@0.13.3/lib/ReactCSSTransitionGroup.js +0 -34
- data/public/vendor/npm/react@0.13.3/lib/ReactCSSTransitionGroupChild.js +0 -92
- data/public/vendor/npm/react@0.13.3/lib/ReactChildReconciler.js +0 -57
- data/public/vendor/npm/react@0.13.3/lib/ReactChildren.js +0 -67
- data/public/vendor/npm/react@0.13.3/lib/ReactClass.js +0 -338
- data/public/vendor/npm/react@0.13.3/lib/ReactComponent.js +0 -50
- data/public/vendor/npm/react@0.13.3/lib/ReactComponentBrowserEnvironment.js +0 -14
- data/public/vendor/npm/react@0.13.3/lib/ReactComponentEnvironment.js +0 -19
- data/public/vendor/npm/react@0.13.3/lib/ReactComponentWithPureRenderMixin.js +0 -7
- data/public/vendor/npm/react@0.13.3/lib/ReactCompositeComponent.js +0 -374
- data/public/vendor/npm/react@0.13.3/lib/ReactContext.js +0 -27
- data/public/vendor/npm/react@0.13.3/lib/ReactCurrentOwner.js +0 -32
- data/public/vendor/npm/react@0.13.3/lib/ReactDOM.js +0 -146
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMButton.js +0 -35
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMComponent.js +0 -267
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMForm.js +0 -21
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMIDOperations.js +0 -63
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMIframe.js +0 -20
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMImg.js +0 -21
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMInput.js +0 -94
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMOption.js +0 -23
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMSelect.js +0 -112
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMSelection.js +0 -103
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMTextComponent.js +0 -38
- data/public/vendor/npm/react@0.13.3/lib/ReactDOMTextarea.js +0 -70
- data/public/vendor/npm/react@0.13.3/lib/ReactDefaultBatchingStrategy.js +0 -37
- data/public/vendor/npm/react@0.13.3/lib/ReactDefaultInjection.js +0 -93
- data/public/vendor/npm/react@0.13.3/lib/ReactDefaultPerf.js +0 -183
- data/public/vendor/npm/react@0.13.3/lib/ReactDefaultPerfAnalysis.js +0 -145
- data/public/vendor/npm/react@0.13.3/lib/ReactElement.js +0 -151
- data/public/vendor/npm/react@0.13.3/lib/ReactElementValidator.js +0 -218
- data/public/vendor/npm/react@0.13.3/lib/ReactEmptyComponent.js +0 -47
- data/public/vendor/npm/react@0.13.3/lib/ReactErrorUtils.js +0 -30
- data/public/vendor/npm/react@0.13.3/lib/ReactEventEmitterMixin.js +0 -12
- data/public/vendor/npm/react@0.13.3/lib/ReactEventListener.js +0 -93
- data/public/vendor/npm/react@0.13.3/lib/ReactFragment.js +0 -110
- data/public/vendor/npm/react@0.13.3/lib/ReactInjection.js +0 -27
- data/public/vendor/npm/react@0.13.3/lib/ReactInputSelection.js +0 -75
- data/public/vendor/npm/react@0.13.3/lib/ReactInstanceHandles.js +0 -113
- data/public/vendor/npm/react@0.13.3/lib/ReactInstanceMap.js +0 -47
- data/public/vendor/npm/react@0.13.3/lib/ReactLifeCycle.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/ReactLink.js +0 -16
- data/public/vendor/npm/react@0.13.3/lib/ReactMarkupChecksum.js +0 -17
- data/public/vendor/npm/react@0.13.3/lib/ReactMount.js +0 -347
- data/public/vendor/npm/react@0.13.3/lib/ReactMultiChild.js +0 -190
- data/public/vendor/npm/react@0.13.3/lib/ReactMultiChildUpdateTypes.js +0 -10
- data/public/vendor/npm/react@0.13.3/lib/ReactNativeComponent.js +0 -53
- data/public/vendor/npm/react@0.13.3/lib/ReactOwner.js +0 -21
- data/public/vendor/npm/react@0.13.3/lib/ReactPerf.js +0 -42
- data/public/vendor/npm/react@0.13.3/lib/ReactPropTransferer.js +0 -40
- data/public/vendor/npm/react@0.13.3/lib/ReactPropTypeLocationNames.js +0 -13
- data/public/vendor/npm/react@0.13.3/lib/ReactPropTypeLocations.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/ReactPropTypes.js +0 -225
- data/public/vendor/npm/react@0.13.3/lib/ReactPutListenerQueue.js +0 -31
- data/public/vendor/npm/react@0.13.3/lib/ReactReconcileTransaction.js +0 -66
- data/public/vendor/npm/react@0.13.3/lib/ReactReconciler.js +0 -44
- data/public/vendor/npm/react@0.13.3/lib/ReactRef.js +0 -36
- data/public/vendor/npm/react@0.13.3/lib/ReactRootIndex.js +0 -29
- data/public/vendor/npm/react@0.13.3/lib/ReactServerRendering.js +0 -44
- data/public/vendor/npm/react@0.13.3/lib/ReactServerRenderingTransaction.js +0 -47
- data/public/vendor/npm/react@0.13.3/lib/ReactStateSetters.js +0 -104
- data/public/vendor/npm/react@0.13.3/lib/ReactTestUtils.js +0 -249
- data/public/vendor/npm/react@0.13.3/lib/ReactTransitionChildMapping.js +0 -53
- data/public/vendor/npm/react@0.13.3/lib/ReactTransitionEvents.js +0 -68
- data/public/vendor/npm/react@0.13.3/lib/ReactTransitionGroup.js +0 -140
- data/public/vendor/npm/react@0.13.3/lib/ReactUpdateQueue.js +0 -107
- data/public/vendor/npm/react@0.13.3/lib/ReactUpdates.js +0 -139
- data/public/vendor/npm/react@0.13.3/lib/ReactWithAddons.js +0 -30
- data/public/vendor/npm/react@0.13.3/lib/SVGDOMPropertyConfig.js +0 -76
- data/public/vendor/npm/react@0.13.3/lib/SelectEventPlugin.js +0 -91
- data/public/vendor/npm/react@0.13.3/lib/ServerReactRootIndex.js +0 -29
- data/public/vendor/npm/react@0.13.3/lib/SimpleEventPlugin.js +0 -287
- data/public/vendor/npm/react@0.13.3/lib/SyntheticClipboardEvent.js +0 -11
- data/public/vendor/npm/react@0.13.3/lib/SyntheticCompositionEvent.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/SyntheticDragEvent.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/SyntheticEvent.js +0 -90
- data/public/vendor/npm/react@0.13.3/lib/SyntheticFocusEvent.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/SyntheticInputEvent.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/SyntheticKeyboardEvent.js +0 -43
- data/public/vendor/npm/react@0.13.3/lib/SyntheticMouseEvent.js +0 -38
- data/public/vendor/npm/react@0.13.3/lib/SyntheticTouchEvent.js +0 -19
- data/public/vendor/npm/react@0.13.3/lib/SyntheticUIEvent.js +0 -29
- data/public/vendor/npm/react@0.13.3/lib/SyntheticWheelEvent.js +0 -18
- data/public/vendor/npm/react@0.13.3/lib/Transaction.js +0 -90
- data/public/vendor/npm/react@0.13.3/lib/ViewportMetrics.js +0 -27
- data/public/vendor/npm/react@0.13.3/lib/accumulateInto.js +0 -26
- data/public/vendor/npm/react@0.13.3/lib/adler32.js +0 -32
- data/public/vendor/npm/react@0.13.3/lib/camelize.js +0 -30
- data/public/vendor/npm/react@0.13.3/lib/camelizeStyleName.js +0 -8
- data/public/vendor/npm/react@0.13.3/lib/cloneWithProps.js +0 -20
- data/public/vendor/npm/react@0.13.3/lib/containsNode.js +0 -20
- data/public/vendor/npm/react@0.13.3/lib/createArrayFromMixed.js +0 -15
- data/public/vendor/npm/react@0.13.3/lib/createFullPageComponent.js +0 -22
- data/public/vendor/npm/react@0.13.3/lib/createNodesFromMarkup.js +0 -39
- data/public/vendor/npm/react@0.13.3/lib/cx.js +0 -20
- data/public/vendor/npm/react@0.13.3/lib/dangerousStyleValue.js +0 -19
- data/public/vendor/npm/react@0.13.3/lib/emptyFunction.js +0 -32
- data/public/vendor/npm/react@0.13.3/lib/emptyObject.js +0 -9
- data/public/vendor/npm/react@0.13.3/lib/escapeTextContentForBrowser.js +0 -38
- data/public/vendor/npm/react@0.13.3/lib/findDOMNode.js +0 -31
- data/public/vendor/npm/react@0.13.3/lib/flattenChildren.js +0 -25
- data/public/vendor/npm/react@0.13.3/lib/focusNode.js +0 -27
- data/public/vendor/npm/react@0.13.3/lib/forEachAccumulated.js +0 -29
- data/public/vendor/npm/react@0.13.3/lib/getActiveElement.js +0 -27
- data/public/vendor/npm/react@0.13.3/lib/getEventCharCode.js +0 -50
- data/public/vendor/npm/react@0.13.3/lib/getEventKey.js +0 -72
- data/public/vendor/npm/react@0.13.3/lib/getEventModifierState.js +0 -45
- data/public/vendor/npm/react@0.13.3/lib/getEventTarget.js +0 -29
- data/public/vendor/npm/react@0.13.3/lib/getIteratorFn.js +0 -42
- data/public/vendor/npm/react@0.13.3/lib/getMarkupWrap.js +0 -73
- data/public/vendor/npm/react@0.13.3/lib/getNodeForCharacterOffset.js +0 -73
- data/public/vendor/npm/react@0.13.3/lib/getReactRootElementInContainer.js +0 -33
- data/public/vendor/npm/react@0.13.3/lib/getTextContentAccessor.js +0 -11
- data/public/vendor/npm/react@0.13.3/lib/getUnboundedScrollPosition.js +0 -38
- data/public/vendor/npm/react@0.13.3/lib/hyphenate.js +0 -31
- data/public/vendor/npm/react@0.13.3/lib/hyphenateStyleName.js +0 -8
- data/public/vendor/npm/react@0.13.3/lib/instantiateReactComponent.js +0 -55
- data/public/vendor/npm/react@0.13.3/lib/invariant.js +0 -26
- data/public/vendor/npm/react@0.13.3/lib/isEventSupported.js +0 -24
- data/public/vendor/npm/react@0.13.3/lib/isNode.js +0 -25
- data/public/vendor/npm/react@0.13.3/lib/isTextInputElement.js +0 -41
- data/public/vendor/npm/react@0.13.3/lib/isTextNode.js +0 -6
- data/public/vendor/npm/react@0.13.3/lib/joinClasses.js +0 -39
- data/public/vendor/npm/react@0.13.3/lib/keyMirror.js +0 -18
- data/public/vendor/npm/react@0.13.3/lib/keyOf.js +0 -34
- data/public/vendor/npm/react@0.13.3/lib/mapObject.js +0 -51
- data/public/vendor/npm/react@0.13.3/lib/memoizeStringOnly.js +0 -31
- data/public/vendor/npm/react@0.13.3/lib/onlyChild.js +0 -11
- data/public/vendor/npm/react@0.13.3/lib/performance.js +0 -8
- data/public/vendor/npm/react@0.13.3/lib/performanceNow.js +0 -7
- data/public/vendor/npm/react@0.13.3/lib/quoteAttributeValueForBrowser.js +0 -7
- data/public/vendor/npm/react@0.13.3/lib/setInnerHTML.js +0 -40
- data/public/vendor/npm/react@0.13.3/lib/setTextContent.js +0 -16
- data/public/vendor/npm/react@0.13.3/lib/shallowEqual.js +0 -42
- data/public/vendor/npm/react@0.13.3/lib/shouldUpdateReactComponent.js +0 -51
- data/public/vendor/npm/react@0.13.3/lib/toArray.js +0 -21
- data/public/vendor/npm/react@0.13.3/lib/traverseAllChildren.js +0 -104
- data/public/vendor/npm/react@0.13.3/lib/update.js +0 -78
- data/public/vendor/npm/react@0.13.3/lib/warning.js +0 -34
- data/public/vendor/npm/react@0.13.3/package.json +0 -34
- data/public/vendor/npm/react@0.13.3/react.js +0 -2
- data/public/vendor/npm/react@0.13.3.js +0 -1
- data/public/vendor/npm/readable-stream@1.1.13/duplex.js +0 -2
- data/public/vendor/npm/readable-stream@1.1.13/passthrough.js +0 -2
- data/public/vendor/npm/readable-stream@1.1.13/readable.js +0 -8
- data/public/vendor/npm/readable-stream@1.1.13/transform.js +0 -2
- data/public/vendor/npm/readable-stream@1.1.13/writable.js +0 -2
- data/public/vendor/npm/readable-stream@1.1.13.js +0 -1
- data/public/vendor/npm/source-map@0.1.31/CHANGELOG.md +0 -112
- data/public/vendor/npm/source-map@0.1.31/LICENSE +0 -28
- data/public/vendor/npm/source-map@0.1.31/Makefile.dryice.js +0 -89
- data/public/vendor/npm/source-map@0.1.31/README.md +0 -434
- data/public/vendor/npm/source-map@0.1.31/build/assert-shim.js +0 -58
- data/public/vendor/npm/source-map@0.1.31/build/mini-require.js +0 -154
- data/public/vendor/npm/source-map@0.1.31/build/prefix-source-map.jsm +0 -20
- data/public/vendor/npm/source-map@0.1.31/build/prefix-utils.jsm +0 -18
- data/public/vendor/npm/source-map@0.1.31/build/suffix-browser.js +0 -8
- data/public/vendor/npm/source-map@0.1.31/build/suffix-source-map.jsm +0 -6
- data/public/vendor/npm/source-map@0.1.31/build/suffix-utils.jsm +0 -21
- data/public/vendor/npm/source-map@0.1.31/build/test-prefix.js +0 -10
- data/public/vendor/npm/source-map@0.1.31/build/test-suffix.js +0 -5
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/array-set.js +0 -49
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/base64-vlq.js +0 -56
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/base64.js +0 -44
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/binary-search.js +0 -83
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/source-map-consumer.js +0 -238
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/source-map-generator.js +0 -231
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/source-node.js +0 -234
- data/public/vendor/npm/source-map@0.1.31/lib/source-map/util.js +0 -207
- data/public/vendor/npm/source-map@0.1.31/lib/source-map.js +0 -4
- data/public/vendor/npm/source-map@0.1.31/package.json +0 -52
- data/public/vendor/npm/source-map@0.1.31/test/run-tests.js +0 -50
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-api.js +0 -19
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-array-set.js +0 -84
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-base64-vlq.js +0 -17
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-base64.js +0 -26
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-binary-search.js +0 -37
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-dog-fooding.js +0 -76
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-consumer.js +0 -426
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-generator.js +0 -480
- data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-node.js +0 -307
- data/public/vendor/npm/source-map@0.1.31/test/source-map/util.js +0 -84
- data/public/vendor/npm/source-map@0.1.31.js +0 -1
- data/public/vendor/npm/through@2.3.8/LICENSE.APACHE2 +0 -15
- data/public/vendor/npm/through@2.3.8/LICENSE.MIT +0 -24
- data/public/vendor/npm/through@2.3.8/index.js +0 -93
- data/public/vendor/npm/through@2.3.8/package.json +0 -36
- data/public/vendor/npm/through@2.3.8/readme.markdown +0 -64
- data/public/vendor/npm/through@2.3.8/test/async.js +0 -26
- data/public/vendor/npm/through@2.3.8/test/auto-destroy.js +0 -26
- data/public/vendor/npm/through@2.3.8/test/buffering.js +0 -57
- data/public/vendor/npm/through@2.3.8/test/end.js +0 -37
- data/public/vendor/npm/through@2.3.8/test/index.js +0 -98
- data/public/vendor/npm/through@2.3.8/test.js +0 -2
- data/public/vendor/npm/through@2.3.8.js +0 -1
- data/views/_options.erb +0 -156
- /data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-buffer@0.1.1}/index.js +0 -0
- /data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/index.js +0 -0
- /data/public/vendor/npm/{readable-stream@1.1.13 → assert@1.5.0}/LICENSE +0 -0
- /data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/LICENSE +0 -0
- /data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/README.md +0 -0
- /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/LICENSE +0 -0
- /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/index.js +0 -0
- /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/README.md +0 -0
- /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/float.patch +0 -0
@@ -0,0 +1,67 @@
|
|
1
|
+
# vm-browserify
|
2
|
+
|
3
|
+
emulate node's vm module for the browser
|
4
|
+
|
5
|
+
[![testling badge](https://ci.testling.com/substack/vm-browserify.png)](https://ci.testling.com/substack/vm-browserify)
|
6
|
+
|
7
|
+
# example
|
8
|
+
|
9
|
+
Just write some client-side javascript:
|
10
|
+
|
11
|
+
``` js
|
12
|
+
var vm = require('vm');
|
13
|
+
|
14
|
+
$(function () {
|
15
|
+
var res = vm.runInNewContext('a + 5', { a : 100 });
|
16
|
+
$('#res').text(res);
|
17
|
+
});
|
18
|
+
```
|
19
|
+
|
20
|
+
compile it with [browserify](http://github.com/substack/node-browserify):
|
21
|
+
|
22
|
+
```
|
23
|
+
browserify entry.js -o bundle.js
|
24
|
+
```
|
25
|
+
|
26
|
+
then whip up some html:
|
27
|
+
|
28
|
+
``` html
|
29
|
+
<html>
|
30
|
+
<head>
|
31
|
+
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.min.js"></script>
|
32
|
+
<script src="/bundle.js"></script>
|
33
|
+
</head>
|
34
|
+
<body>
|
35
|
+
result = <span id="res"></span>
|
36
|
+
</body>
|
37
|
+
</html>
|
38
|
+
```
|
39
|
+
|
40
|
+
and when you load the page you should see:
|
41
|
+
|
42
|
+
```
|
43
|
+
result = 105
|
44
|
+
```
|
45
|
+
|
46
|
+
# methods
|
47
|
+
|
48
|
+
## vm.runInNewContext(code, context={})
|
49
|
+
|
50
|
+
Evaluate some `code` in a new iframe with a `context`.
|
51
|
+
|
52
|
+
Contexts are like wrapping your code in a `with()` except slightly less terrible
|
53
|
+
because the code is sandboxed into a new iframe.
|
54
|
+
|
55
|
+
# install
|
56
|
+
|
57
|
+
This module is depended upon by browserify, so you should just be able to
|
58
|
+
`require('vm')` and it will just work. However if you want to use this module
|
59
|
+
directly you can install it with [npm](http://npmjs.org):
|
60
|
+
|
61
|
+
```
|
62
|
+
npm install vm-browserify
|
63
|
+
```
|
64
|
+
|
65
|
+
# license
|
66
|
+
|
67
|
+
MIT
|
@@ -0,0 +1,34 @@
|
|
1
|
+
/* */
|
2
|
+
var test = require('tape');
|
3
|
+
var vm = require('../index');
|
4
|
+
test('vmRunInNewContext', function(t) {
|
5
|
+
t.plan(6);
|
6
|
+
t.equal(vm.runInNewContext('a + 5', {a: 100}), 105);
|
7
|
+
(function() {
|
8
|
+
var vars = {x: 10};
|
9
|
+
t.equal(vm.runInNewContext('x++', vars), 10);
|
10
|
+
t.equal(vars.x, 11);
|
11
|
+
})();
|
12
|
+
(function() {
|
13
|
+
var vars = {x: 10};
|
14
|
+
t.equal(vm.runInNewContext('var y = 3; y + x++', vars), 13);
|
15
|
+
t.equal(vars.x, 11);
|
16
|
+
t.equal(vars.y, 3);
|
17
|
+
})();
|
18
|
+
t.end();
|
19
|
+
});
|
20
|
+
test('vmRunInContext', function(t) {
|
21
|
+
t.plan(2);
|
22
|
+
var context = vm.createContext({foo: 1});
|
23
|
+
vm.runInContext('var x = 1', context);
|
24
|
+
t.deepEqual(context, {
|
25
|
+
foo: 1,
|
26
|
+
x: 1
|
27
|
+
});
|
28
|
+
vm.runInContext('var y = 1', context);
|
29
|
+
t.deepEqual(context, {
|
30
|
+
foo: 1,
|
31
|
+
x: 1,
|
32
|
+
y: 1
|
33
|
+
});
|
34
|
+
});
|
@@ -0,0 +1 @@
|
|
1
|
+
module.exports = require("npm:vm-browserify@0.0.4/index.js");
|
@@ -161,7 +161,7 @@ module.exports = function(grunt) {
|
|
161
161
|
}
|
162
162
|
});
|
163
163
|
grunt.registerTask('webshimscombos', 'create combos from polyfiller.js.', function() {
|
164
|
-
var phantomjs = require(
|
164
|
+
var phantomjs = require('phantomjs');
|
165
165
|
var done = this.async();
|
166
166
|
var combos = {};
|
167
167
|
grunt.util.spawn({
|
@@ -200,7 +200,7 @@ module.exports = function(grunt) {
|
|
200
200
|
});
|
201
201
|
grunt.registerTask('cfgcopymin', 'config min and copy tasks.', function() {
|
202
202
|
var files = getFiles('src', false, '**', 'demos/js-webshim/dev', '*.js');
|
203
|
-
var path = require(
|
203
|
+
var path = require('path');
|
204
204
|
var copyTask = {};
|
205
205
|
var minTask = {};
|
206
206
|
var minPath,
|
@@ -263,8 +263,8 @@ module.exports = function(grunt) {
|
|
263
263
|
grunt.registerTask('dev', ['webshimscombos', 'concat', 'cfgcopymin', 'copy:main', 'sass', 'watch']);
|
264
264
|
grunt.registerTask('release', ['versiontest', 'clean', 'default', 'bytesize']);
|
265
265
|
function getFiles(srcdir, destdir, wildcard, compareDir, compareMatch) {
|
266
|
-
var path = require(
|
267
|
-
var fs = require(
|
266
|
+
var path = require('path');
|
267
|
+
var fs = require('fs');
|
268
268
|
var existsSync = fs.existsSync || path.existsSync;
|
269
269
|
var files = {};
|
270
270
|
grunt.file.expand({cwd: srcdir}, wildcard).forEach(function(relpath) {
|
@@ -1,5 +1,5 @@
|
|
1
1
|
/* */
|
2
|
-
var fs = require(
|
2
|
+
var fs = require('fs');
|
3
3
|
var url = phantom.args[0];
|
4
4
|
var last = new Date();
|
5
5
|
function sendMessage(args) {
|
@@ -9,7 +9,7 @@ function sendMessage(args) {
|
|
9
9
|
setInterval(function() {
|
10
10
|
sendMessage(['done_timeout']);
|
11
11
|
}, 5000);
|
12
|
-
var page = require(
|
12
|
+
var page = require('webpage').create();
|
13
13
|
page.onAlert = function(args) {
|
14
14
|
sendMessage(JSON.parse(args));
|
15
15
|
};
|