sequenceserver 2.0.0 → 2.1.0
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- checksums.yaml +4 -4
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +36 -30
- data/lib/sequenceserver/config.rb +49 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/routes.rb +69 -7
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +2 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +1 -0
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +315 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +99 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +41 -0
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
- data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/src/shims/combos/10.js +1 -1
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Domain.prototype.lookup = function(moduleName) {
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|
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|
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}
|
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|
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|
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|
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|
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|
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|
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var previousModule = this._currentModule;
|
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this._currentModule = moduleName;
|
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module(this.require.bind(this), exports, { id: moduleName, uri: "" });
|
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|
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module = exports;
|
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|
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}
|
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|
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|
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|
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|
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this.modules[moduleName] = module;
|
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|
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|
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|
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return module;
|
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|
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};
|
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|
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|
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|
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|
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|
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define.Domain = Domain;
|
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define.globalDomain = new Domain();
|
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var require = define.globalDomain.require.bind(define.globalDomain);
|
@@ -1,20 +0,0 @@
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/* -*- Mode: js; js-indent-level: 2; -*- */
|
2
|
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/*
|
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* Copyright 2011 Mozilla Foundation and contributors
|
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|
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* Licensed under the New BSD license. See LICENSE or:
|
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|
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* http://opensource.org/licenses/BSD-3-Clause
|
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|
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*/
|
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|
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|
8
|
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/*
|
9
|
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* WARNING!
|
10
|
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*
|
11
|
-
* Do not edit this file directly, it is built from the sources at
|
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|
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* https://github.com/mozilla/source-map/
|
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|
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*/
|
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|
-
|
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|
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///////////////////////////////////////////////////////////////////////////////
|
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|
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|
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|
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this.EXPORTED_SYMBOLS = [ "SourceMapConsumer", "SourceMapGenerator", "SourceNode" ];
|
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|
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|
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Components.utils.import('resource://gre/modules/devtools/Require.jsm');
|
@@ -1,18 +0,0 @@
|
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1
|
-
/* -*- Mode: js; js-indent-level: 2; -*- */
|
2
|
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/*
|
3
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* Copyright 2011 Mozilla Foundation and contributors
|
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|
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* Licensed under the New BSD license. See LICENSE or:
|
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|
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* http://opensource.org/licenses/BSD-3-Clause
|
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|
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*/
|
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|
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|
8
|
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/*
|
9
|
-
* WARNING!
|
10
|
-
*
|
11
|
-
* Do not edit this file directly, it is built from the sources at
|
12
|
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* https://github.com/mozilla/source-map/
|
13
|
-
*/
|
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|
-
|
15
|
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Components.utils.import('resource://gre/modules/devtools/Require.jsm');
|
16
|
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Components.utils.import('resource://gre/modules/devtools/SourceMap.jsm');
|
17
|
-
|
18
|
-
this.EXPORTED_SYMBOLS = [ "define", "runSourceMapTests" ];
|
@@ -1,8 +0,0 @@
|
|
1
|
-
/* -*- Mode: js; js-indent-level: 2; -*- */
|
2
|
-
///////////////////////////////////////////////////////////////////////////////
|
3
|
-
|
4
|
-
this.sourceMap = {
|
5
|
-
SourceMapConsumer: require('source-map/source-map-consumer').SourceMapConsumer,
|
6
|
-
SourceMapGenerator: require('source-map/source-map-generator').SourceMapGenerator,
|
7
|
-
SourceNode: require('source-map/source-node').SourceNode
|
8
|
-
};
|
@@ -1,6 +0,0 @@
|
|
1
|
-
/* -*- Mode: js; js-indent-level: 2; -*- */
|
2
|
-
///////////////////////////////////////////////////////////////////////////////
|
3
|
-
|
4
|
-
this.SourceMapConsumer = require('source-map/source-map-consumer').SourceMapConsumer;
|
5
|
-
this.SourceMapGenerator = require('source-map/source-map-generator').SourceMapGenerator;
|
6
|
-
this.SourceNode = require('source-map/source-node').SourceNode;
|
@@ -1,21 +0,0 @@
|
|
1
|
-
/* -*- Mode: js; js-indent-level: 2; -*- */
|
2
|
-
/*
|
3
|
-
* Copyright 2011 Mozilla Foundation and contributors
|
4
|
-
* Licensed under the New BSD license. See LICENSE or:
|
5
|
-
* http://opensource.org/licenses/BSD-3-Clause
|
6
|
-
*/
|
7
|
-
function runSourceMapTests(modName, do_throw) {
|
8
|
-
let mod = require(modName);
|
9
|
-
let assert = require('test/source-map/assert');
|
10
|
-
let util = require('test/source-map/util');
|
11
|
-
|
12
|
-
assert.init(do_throw);
|
13
|
-
|
14
|
-
for (let k in mod) {
|
15
|
-
if (/^test/.test(k)) {
|
16
|
-
mod[k](assert, util);
|
17
|
-
}
|
18
|
-
}
|
19
|
-
|
20
|
-
}
|
21
|
-
this.runSourceMapTests = runSourceMapTests;
|
@@ -1,49 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
"format cjs";
|
3
|
-
if (typeof define !== 'function') {
|
4
|
-
var define = require("amdefine")(module, require);
|
5
|
-
}
|
6
|
-
define(function(require, exports, module) {
|
7
|
-
var util = require("./util");
|
8
|
-
function ArraySet() {
|
9
|
-
this._array = [];
|
10
|
-
this._set = {};
|
11
|
-
}
|
12
|
-
ArraySet.fromArray = function ArraySet_fromArray(aArray, aAllowDuplicates) {
|
13
|
-
var set = new ArraySet();
|
14
|
-
for (var i = 0,
|
15
|
-
len = aArray.length; i < len; i++) {
|
16
|
-
set.add(aArray[i], aAllowDuplicates);
|
17
|
-
}
|
18
|
-
return set;
|
19
|
-
};
|
20
|
-
ArraySet.prototype.add = function ArraySet_add(aStr, aAllowDuplicates) {
|
21
|
-
var isDuplicate = this.has(aStr);
|
22
|
-
var idx = this._array.length;
|
23
|
-
if (!isDuplicate || aAllowDuplicates) {
|
24
|
-
this._array.push(aStr);
|
25
|
-
}
|
26
|
-
if (!isDuplicate) {
|
27
|
-
this._set[util.toSetString(aStr)] = idx;
|
28
|
-
}
|
29
|
-
};
|
30
|
-
ArraySet.prototype.has = function ArraySet_has(aStr) {
|
31
|
-
return Object.prototype.hasOwnProperty.call(this._set, util.toSetString(aStr));
|
32
|
-
};
|
33
|
-
ArraySet.prototype.indexOf = function ArraySet_indexOf(aStr) {
|
34
|
-
if (this.has(aStr)) {
|
35
|
-
return this._set[util.toSetString(aStr)];
|
36
|
-
}
|
37
|
-
throw new Error('"' + aStr + '" is not in the set.');
|
38
|
-
};
|
39
|
-
ArraySet.prototype.at = function ArraySet_at(aIdx) {
|
40
|
-
if (aIdx >= 0 && aIdx < this._array.length) {
|
41
|
-
return this._array[aIdx];
|
42
|
-
}
|
43
|
-
throw new Error('No element indexed by ' + aIdx);
|
44
|
-
};
|
45
|
-
ArraySet.prototype.toArray = function ArraySet_toArray() {
|
46
|
-
return this._array.slice();
|
47
|
-
};
|
48
|
-
exports.ArraySet = ArraySet;
|
49
|
-
});
|
@@ -1,56 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
"format cjs";
|
3
|
-
if (typeof define !== 'function') {
|
4
|
-
var define = require("amdefine")(module, require);
|
5
|
-
}
|
6
|
-
define(function(require, exports, module) {
|
7
|
-
var base64 = require("./base64");
|
8
|
-
var VLQ_BASE_SHIFT = 5;
|
9
|
-
var VLQ_BASE = 1 << VLQ_BASE_SHIFT;
|
10
|
-
var VLQ_BASE_MASK = VLQ_BASE - 1;
|
11
|
-
var VLQ_CONTINUATION_BIT = VLQ_BASE;
|
12
|
-
function toVLQSigned(aValue) {
|
13
|
-
return aValue < 0 ? ((-aValue) << 1) + 1 : (aValue << 1) + 0;
|
14
|
-
}
|
15
|
-
function fromVLQSigned(aValue) {
|
16
|
-
var isNegative = (aValue & 1) === 1;
|
17
|
-
var shifted = aValue >> 1;
|
18
|
-
return isNegative ? -shifted : shifted;
|
19
|
-
}
|
20
|
-
exports.encode = function base64VLQ_encode(aValue) {
|
21
|
-
var encoded = "";
|
22
|
-
var digit;
|
23
|
-
var vlq = toVLQSigned(aValue);
|
24
|
-
do {
|
25
|
-
digit = vlq & VLQ_BASE_MASK;
|
26
|
-
vlq >>>= VLQ_BASE_SHIFT;
|
27
|
-
if (vlq > 0) {
|
28
|
-
digit |= VLQ_CONTINUATION_BIT;
|
29
|
-
}
|
30
|
-
encoded += base64.encode(digit);
|
31
|
-
} while (vlq > 0);
|
32
|
-
return encoded;
|
33
|
-
};
|
34
|
-
exports.decode = function base64VLQ_decode(aStr) {
|
35
|
-
var i = 0;
|
36
|
-
var strLen = aStr.length;
|
37
|
-
var result = 0;
|
38
|
-
var shift = 0;
|
39
|
-
var continuation,
|
40
|
-
digit;
|
41
|
-
do {
|
42
|
-
if (i >= strLen) {
|
43
|
-
throw new Error("Expected more digits in base 64 VLQ value.");
|
44
|
-
}
|
45
|
-
digit = base64.decode(aStr.charAt(i++));
|
46
|
-
continuation = !!(digit & VLQ_CONTINUATION_BIT);
|
47
|
-
digit &= VLQ_BASE_MASK;
|
48
|
-
result = result + (digit << shift);
|
49
|
-
shift += VLQ_BASE_SHIFT;
|
50
|
-
} while (continuation);
|
51
|
-
return {
|
52
|
-
value: fromVLQSigned(result),
|
53
|
-
rest: aStr.slice(i)
|
54
|
-
};
|
55
|
-
};
|
56
|
-
});
|
@@ -1,44 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
"format cjs";
|
3
|
-
/* -*- Mode: js; js-indent-level: 2; -*- */
|
4
|
-
/*
|
5
|
-
* Copyright 2011 Mozilla Foundation and contributors
|
6
|
-
* Licensed under the New BSD license. See LICENSE or:
|
7
|
-
* http://opensource.org/licenses/BSD-3-Clause
|
8
|
-
*/
|
9
|
-
if (typeof define !== 'function') {
|
10
|
-
var define = require('amdefine')(module, require);
|
11
|
-
}
|
12
|
-
define(function (require, exports, module) {
|
13
|
-
|
14
|
-
var charToIntMap = {};
|
15
|
-
var intToCharMap = {};
|
16
|
-
|
17
|
-
'ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/'
|
18
|
-
.split('')
|
19
|
-
.forEach(function (ch, index) {
|
20
|
-
charToIntMap[ch] = index;
|
21
|
-
intToCharMap[index] = ch;
|
22
|
-
});
|
23
|
-
|
24
|
-
/**
|
25
|
-
* Encode an integer in the range of 0 to 63 to a single base 64 digit.
|
26
|
-
*/
|
27
|
-
exports.encode = function base64_encode(aNumber) {
|
28
|
-
if (aNumber in intToCharMap) {
|
29
|
-
return intToCharMap[aNumber];
|
30
|
-
}
|
31
|
-
throw new TypeError("Must be between 0 and 63: " + aNumber);
|
32
|
-
};
|
33
|
-
|
34
|
-
/**
|
35
|
-
* Decode a single base 64 digit to an integer.
|
36
|
-
*/
|
37
|
-
exports.decode = function base64_decode(aChar) {
|
38
|
-
if (aChar in charToIntMap) {
|
39
|
-
return charToIntMap[aChar];
|
40
|
-
}
|
41
|
-
throw new TypeError("Not a valid base 64 digit: " + aChar);
|
42
|
-
};
|
43
|
-
|
44
|
-
});
|
@@ -1,83 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
"format cjs";
|
3
|
-
/* -*- Mode: js; js-indent-level: 2; -*- */
|
4
|
-
/*
|
5
|
-
* Copyright 2011 Mozilla Foundation and contributors
|
6
|
-
* Licensed under the New BSD license. See LICENSE or:
|
7
|
-
* http://opensource.org/licenses/BSD-3-Clause
|
8
|
-
*/
|
9
|
-
if (typeof define !== 'function') {
|
10
|
-
var define = require('amdefine')(module, require);
|
11
|
-
}
|
12
|
-
define(function (require, exports, module) {
|
13
|
-
|
14
|
-
/**
|
15
|
-
* Recursive implementation of binary search.
|
16
|
-
*
|
17
|
-
* @param aLow Indices here and lower do not contain the needle.
|
18
|
-
* @param aHigh Indices here and higher do not contain the needle.
|
19
|
-
* @param aNeedle The element being searched for.
|
20
|
-
* @param aHaystack The non-empty array being searched.
|
21
|
-
* @param aCompare Function which takes two elements and returns -1, 0, or 1.
|
22
|
-
*/
|
23
|
-
function recursiveSearch(aLow, aHigh, aNeedle, aHaystack, aCompare) {
|
24
|
-
// This function terminates when one of the following is true:
|
25
|
-
//
|
26
|
-
// 1. We find the exact element we are looking for.
|
27
|
-
//
|
28
|
-
// 2. We did not find the exact element, but we can return the next
|
29
|
-
// closest element that is less than that element.
|
30
|
-
//
|
31
|
-
// 3. We did not find the exact element, and there is no next-closest
|
32
|
-
// element which is less than the one we are searching for, so we
|
33
|
-
// return null.
|
34
|
-
var mid = Math.floor((aHigh - aLow) / 2) + aLow;
|
35
|
-
var cmp = aCompare(aNeedle, aHaystack[mid], true);
|
36
|
-
if (cmp === 0) {
|
37
|
-
// Found the element we are looking for.
|
38
|
-
return aHaystack[mid];
|
39
|
-
}
|
40
|
-
else if (cmp > 0) {
|
41
|
-
// aHaystack[mid] is greater than our needle.
|
42
|
-
if (aHigh - mid > 1) {
|
43
|
-
// The element is in the upper half.
|
44
|
-
return recursiveSearch(mid, aHigh, aNeedle, aHaystack, aCompare);
|
45
|
-
}
|
46
|
-
// We did not find an exact match, return the next closest one
|
47
|
-
// (termination case 2).
|
48
|
-
return aHaystack[mid];
|
49
|
-
}
|
50
|
-
else {
|
51
|
-
// aHaystack[mid] is less than our needle.
|
52
|
-
if (mid - aLow > 1) {
|
53
|
-
// The element is in the lower half.
|
54
|
-
return recursiveSearch(aLow, mid, aNeedle, aHaystack, aCompare);
|
55
|
-
}
|
56
|
-
// The exact needle element was not found in this haystack. Determine if
|
57
|
-
// we are in termination case (2) or (3) and return the appropriate thing.
|
58
|
-
return aLow < 0
|
59
|
-
? null
|
60
|
-
: aHaystack[aLow];
|
61
|
-
}
|
62
|
-
}
|
63
|
-
|
64
|
-
/**
|
65
|
-
* This is an implementation of binary search which will always try and return
|
66
|
-
* the next lowest value checked if there is no exact hit. This is because
|
67
|
-
* mappings between original and generated line/col pairs are single points,
|
68
|
-
* and there is an implicit region between each of them, so a miss just means
|
69
|
-
* that you aren't on the very start of a region.
|
70
|
-
*
|
71
|
-
* @param aNeedle The element you are looking for.
|
72
|
-
* @param aHaystack The array that is being searched.
|
73
|
-
* @param aCompare A function which takes the needle and an element in the
|
74
|
-
* array and returns -1, 0, or 1 depending on whether the needle is less
|
75
|
-
* than, equal to, or greater than the element, respectively.
|
76
|
-
*/
|
77
|
-
exports.search = function search(aNeedle, aHaystack, aCompare) {
|
78
|
-
return aHaystack.length > 0
|
79
|
-
? recursiveSearch(-1, aHaystack.length, aNeedle, aHaystack, aCompare)
|
80
|
-
: null;
|
81
|
-
};
|
82
|
-
|
83
|
-
});
|