sequenceserver 2.0.0 → 2.1.0

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Files changed (667) hide show
  1. checksums.yaml +4 -4
  2. data/lib/sequenceserver/api_errors.rb +24 -2
  3. data/lib/sequenceserver/blast/job.rb +41 -7
  4. data/lib/sequenceserver/blast/report.rb +36 -30
  5. data/lib/sequenceserver/config.rb +49 -27
  6. data/lib/sequenceserver/job.rb +13 -3
  7. data/lib/sequenceserver/job_remover.rb +25 -29
  8. data/lib/sequenceserver/refinements.rb +15 -0
  9. data/lib/sequenceserver/routes.rb +69 -7
  10. data/lib/sequenceserver/sequence.rb +8 -7
  11. data/lib/sequenceserver/sys.rb +2 -2
  12. data/lib/sequenceserver/version.rb +1 -1
  13. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  14. data/lib/sequenceserver.rb +1 -0
  15. data/public/config.js +149 -143
  16. data/public/css/sequenceserver.css +44 -3
  17. data/public/css/sequenceserver.min.css +3 -3
  18. data/public/js/alignment_exporter.js +16 -8
  19. data/public/js/circos.js +370 -234
  20. data/public/js/cloud_share_modal.js +216 -0
  21. data/public/js/databases.js +144 -0
  22. data/public/js/databases_tree.js +42 -113
  23. data/public/js/dnd.js +164 -0
  24. data/public/js/error_modal.js +4 -11
  25. data/public/js/exporter.js +7 -3
  26. data/public/js/form.js +260 -0
  27. data/public/js/grapher.js +113 -106
  28. data/public/js/hit.js +80 -67
  29. data/public/js/hits_overview.js +2 -2
  30. data/public/js/hsp.js +343 -288
  31. data/public/js/jquery_world.js +4 -4
  32. data/public/js/mailto.js +36 -0
  33. data/public/js/options.js +84 -0
  34. data/public/js/query.js +319 -59
  35. data/public/js/report.js +315 -269
  36. data/public/js/report_root.js +75 -0
  37. data/public/js/search.js +28 -1011
  38. data/public/js/search_button.js +195 -0
  39. data/public/js/sequence.js +2409 -2411
  40. data/public/js/sequence_modal.js +152 -159
  41. data/public/js/share_url.js +23 -0
  42. data/public/js/sidebar.js +262 -83
  43. data/public/js/tests/database.spec.js +60 -0
  44. data/public/js/tests/mock_data/databases.json +91 -0
  45. data/public/js/tests/mock_data/long_response.json +269 -0
  46. data/public/js/tests/mock_data/short_response.json +2240 -0
  47. data/public/js/tests/report.spec.js +99 -0
  48. data/public/js/tests/search_button.spec.js +14 -0
  49. data/public/js/tests/search_query.spec.js +41 -0
  50. data/public/packages/circosJS@1.7.0.js +1640 -0
  51. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  52. data/public/sequenceserver-report.min.js +2425 -19
  53. data/public/sequenceserver-search.min.js +2337 -15
  54. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  55. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  56. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  57. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  58. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  59. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  60. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  61. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  62. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  63. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  64. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  65. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  66. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  67. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  68. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  69. data/public/vendor/npm/assert@1.5.0.js +1 -0
  70. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  71. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  72. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  73. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  74. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  75. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  76. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  77. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  78. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  79. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  80. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  81. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  82. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  83. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  84. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  85. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  86. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  87. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  88. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  89. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  90. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  91. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  92. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  93. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  94. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  95. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  96. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  97. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  98. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  99. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  100. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  101. data/public/vendor/npm/events@1.0.2.js +1 -1
  102. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  103. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  104. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  105. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  106. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  107. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  108. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  109. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  110. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  111. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  112. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  113. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  114. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  115. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  116. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  117. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  118. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  119. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  120. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  121. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  122. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  123. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  124. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  125. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  126. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  127. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  128. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  129. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  130. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  131. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  132. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  133. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  134. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  135. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  136. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  137. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  138. data/public/vendor/npm/process@0.11.10.js +1 -0
  139. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  140. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  141. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  142. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  143. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  144. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  145. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  146. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  147. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  148. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  149. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  150. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  151. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  152. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  153. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  154. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  155. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  156. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  157. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  158. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  159. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  160. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  161. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  162. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  163. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  164. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  165. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  166. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  167. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  168. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  169. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  170. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  171. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  172. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  173. data/public/vendor/npm/react@18.0.0/README.md +13 -0
  174. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
  175. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
  176. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
  177. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
  178. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
  179. data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
  180. data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
  181. data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
  182. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
  183. data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
  184. data/public/vendor/npm/react@18.0.0/index.js +9 -0
  185. data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
  186. data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
  187. data/public/vendor/npm/react@18.0.0/package.json +47 -0
  188. data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
  189. data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
  190. data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
  191. data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
  192. data/public/vendor/npm/react@18.0.0.js +1 -0
  193. data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
  194. data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
  195. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
  196. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
  197. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
  198. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
  199. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
  200. data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
  201. data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
  202. data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
  203. data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
  204. data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
  205. data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
  206. data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
  207. data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
  208. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
  209. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
  210. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
  211. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
  212. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
  213. data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
  214. data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
  215. data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
  216. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
  217. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
  218. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
  219. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
  220. data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
  221. data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
  222. data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
  223. data/public/vendor/npm/scheduler@0.21.0.js +1 -0
  224. data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
  225. data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
  226. data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
  227. data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
  228. data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
  229. data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
  230. data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
  231. data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
  232. data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
  233. data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
  234. data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
  235. data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
  236. data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
  237. data/public/vendor/npm/util@0.10.3/util.js +3 -3
  238. data/public/vendor/npm/util@0.10.3.js +1 -1
  239. data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
  240. data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
  241. data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
  242. data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
  243. data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
  244. data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
  245. data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
  246. data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
  247. data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
  248. data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
  249. data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
  250. data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
  251. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
  252. data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
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@@ -1,604 +0,0 @@
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- diff --git a/lib/util.js b/lib/util.js
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- index a03e874..9074e8e 100644
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- --- a/lib/util.js
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- +++ b/lib/util.js
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- @@ -19,430 +19,6 @@
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- // OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
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- // USE OR OTHER DEALINGS IN THE SOFTWARE.
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-
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- -var formatRegExp = /%[sdj%]/g;
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- -exports.format = function(f) {
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- - if (!isString(f)) {
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- - var objects = [];
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- - for (var i = 0; i < arguments.length; i++) {
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- - objects.push(inspect(arguments[i]));
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- - }
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- - return objects.join(' ');
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- - }
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- -
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- - var i = 1;
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- - var args = arguments;
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- - var len = args.length;
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- - var str = String(f).replace(formatRegExp, function(x) {
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- - if (x === '%%') return '%';
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- - if (i >= len) return x;
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- - switch (x) {
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- - case '%s': return String(args[i++]);
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- - case '%d': return Number(args[i++]);
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- - case '%j':
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- - try {
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- - return JSON.stringify(args[i++]);
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- - } catch (_) {
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- - return '[Circular]';
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- - }
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- - default:
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- - return x;
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- - }
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- - });
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- - for (var x = args[i]; i < len; x = args[++i]) {
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- - if (isNull(x) || !isObject(x)) {
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- - str += ' ' + x;
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- - } else {
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- - str += ' ' + inspect(x);
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- - }
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- - }
45
- - return str;
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- -};
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- -
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- -
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- -// Mark that a method should not be used.
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- -// Returns a modified function which warns once by default.
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- -// If --no-deprecation is set, then it is a no-op.
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- -exports.deprecate = function(fn, msg) {
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- - // Allow for deprecating things in the process of starting up.
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- - if (isUndefined(global.process)) {
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- - return function() {
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- - return exports.deprecate(fn, msg).apply(this, arguments);
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- - };
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- - }
59
- -
60
- - if (process.noDeprecation === true) {
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- - return fn;
62
- - }
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- -
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- - var warned = false;
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- - function deprecated() {
66
- - if (!warned) {
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- - if (process.throwDeprecation) {
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- - throw new Error(msg);
69
- - } else if (process.traceDeprecation) {
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- - console.trace(msg);
71
- - } else {
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- - console.error(msg);
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- - }
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- - warned = true;
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- - }
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- - return fn.apply(this, arguments);
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- - }
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- -
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- - return deprecated;
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- -};
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- -
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- -
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- -var debugs = {};
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- -var debugEnviron;
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- -exports.debuglog = function(set) {
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- - if (isUndefined(debugEnviron))
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- - debugEnviron = process.env.NODE_DEBUG || '';
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- - set = set.toUpperCase();
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- - if (!debugs[set]) {
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- - if (new RegExp('\\b' + set + '\\b', 'i').test(debugEnviron)) {
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- - var pid = process.pid;
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- - debugs[set] = function() {
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- - var msg = exports.format.apply(exports, arguments);
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- - console.error('%s %d: %s', set, pid, msg);
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- - };
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- - } else {
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- - debugs[set] = function() {};
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- - }
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- - }
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- - return debugs[set];
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- -};
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- -
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- -
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- -/**
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- - * Echos the value of a value. Trys to print the value out
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- - * in the best way possible given the different types.
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- - *
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- - * @param {Object} obj The object to print out.
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- - * @param {Object} opts Optional options object that alters the output.
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- - */
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- -/* legacy: obj, showHidden, depth, colors*/
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- -function inspect(obj, opts) {
113
- - // default options
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- - var ctx = {
115
- - seen: [],
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- - stylize: stylizeNoColor
117
- - };
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- - // legacy...
119
- - if (arguments.length >= 3) ctx.depth = arguments[2];
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- - if (arguments.length >= 4) ctx.colors = arguments[3];
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- - if (isBoolean(opts)) {
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- - // legacy...
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- - ctx.showHidden = opts;
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- - } else if (opts) {
125
- - // got an "options" object
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- - exports._extend(ctx, opts);
127
- - }
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- - // set default options
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- - if (isUndefined(ctx.showHidden)) ctx.showHidden = false;
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- - if (isUndefined(ctx.depth)) ctx.depth = 2;
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- - if (isUndefined(ctx.colors)) ctx.colors = false;
132
- - if (isUndefined(ctx.customInspect)) ctx.customInspect = true;
133
- - if (ctx.colors) ctx.stylize = stylizeWithColor;
134
- - return formatValue(ctx, obj, ctx.depth);
135
- -}
136
- -exports.inspect = inspect;
137
- -
138
- -
139
- -// http://en.wikipedia.org/wiki/ANSI_escape_code#graphics
140
- -inspect.colors = {
141
- - 'bold' : [1, 22],
142
- - 'italic' : [3, 23],
143
- - 'underline' : [4, 24],
144
- - 'inverse' : [7, 27],
145
- - 'white' : [37, 39],
146
- - 'grey' : [90, 39],
147
- - 'black' : [30, 39],
148
- - 'blue' : [34, 39],
149
- - 'cyan' : [36, 39],
150
- - 'green' : [32, 39],
151
- - 'magenta' : [35, 39],
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- - 'red' : [31, 39],
153
- - 'yellow' : [33, 39]
154
- -};
155
- -
156
- -// Don't use 'blue' not visible on cmd.exe
157
- -inspect.styles = {
158
- - 'special': 'cyan',
159
- - 'number': 'yellow',
160
- - 'boolean': 'yellow',
161
- - 'undefined': 'grey',
162
- - 'null': 'bold',
163
- - 'string': 'green',
164
- - 'date': 'magenta',
165
- - // "name": intentionally not styling
166
- - 'regexp': 'red'
167
- -};
168
- -
169
- -
170
- -function stylizeWithColor(str, styleType) {
171
- - var style = inspect.styles[styleType];
172
- -
173
- - if (style) {
174
- - return '\u001b[' + inspect.colors[style][0] + 'm' + str +
175
- - '\u001b[' + inspect.colors[style][1] + 'm';
176
- - } else {
177
- - return str;
178
- - }
179
- -}
180
- -
181
- -
182
- -function stylizeNoColor(str, styleType) {
183
- - return str;
184
- -}
185
- -
186
- -
187
- -function arrayToHash(array) {
188
- - var hash = {};
189
- -
190
- - array.forEach(function(val, idx) {
191
- - hash[val] = true;
192
- - });
193
- -
194
- - return hash;
195
- -}
196
- -
197
- -
198
- -function formatValue(ctx, value, recurseTimes) {
199
- - // Provide a hook for user-specified inspect functions.
200
- - // Check that value is an object with an inspect function on it
201
- - if (ctx.customInspect &&
202
- - value &&
203
- - isFunction(value.inspect) &&
204
- - // Filter out the util module, it's inspect function is special
205
- - value.inspect !== exports.inspect &&
206
- - // Also filter out any prototype objects using the circular check.
207
- - !(value.constructor && value.constructor.prototype === value)) {
208
- - var ret = value.inspect(recurseTimes, ctx);
209
- - if (!isString(ret)) {
210
- - ret = formatValue(ctx, ret, recurseTimes);
211
- - }
212
- - return ret;
213
- - }
214
- -
215
- - // Primitive types cannot have properties
216
- - var primitive = formatPrimitive(ctx, value);
217
- - if (primitive) {
218
- - return primitive;
219
- - }
220
- -
221
- - // Look up the keys of the object.
222
- - var keys = Object.keys(value);
223
- - var visibleKeys = arrayToHash(keys);
224
- -
225
- - if (ctx.showHidden) {
226
- - keys = Object.getOwnPropertyNames(value);
227
- - }
228
- -
229
- - // Some type of object without properties can be shortcutted.
230
- - if (keys.length === 0) {
231
- - if (isFunction(value)) {
232
- - var name = value.name ? ': ' + value.name : '';
233
- - return ctx.stylize('[Function' + name + ']', 'special');
234
- - }
235
- - if (isRegExp(value)) {
236
- - return ctx.stylize(RegExp.prototype.toString.call(value), 'regexp');
237
- - }
238
- - if (isDate(value)) {
239
- - return ctx.stylize(Date.prototype.toString.call(value), 'date');
240
- - }
241
- - if (isError(value)) {
242
- - return formatError(value);
243
- - }
244
- - }
245
- -
246
- - var base = '', array = false, braces = ['{', '}'];
247
- -
248
- - // Make Array say that they are Array
249
- - if (isArray(value)) {
250
- - array = true;
251
- - braces = ['[', ']'];
252
- - }
253
- -
254
- - // Make functions say that they are functions
255
- - if (isFunction(value)) {
256
- - var n = value.name ? ': ' + value.name : '';
257
- - base = ' [Function' + n + ']';
258
- - }
259
- -
260
- - // Make RegExps say that they are RegExps
261
- - if (isRegExp(value)) {
262
- - base = ' ' + RegExp.prototype.toString.call(value);
263
- - }
264
- -
265
- - // Make dates with properties first say the date
266
- - if (isDate(value)) {
267
- - base = ' ' + Date.prototype.toUTCString.call(value);
268
- - }
269
- -
270
- - // Make error with message first say the error
271
- - if (isError(value)) {
272
- - base = ' ' + formatError(value);
273
- - }
274
- -
275
- - if (keys.length === 0 && (!array || value.length == 0)) {
276
- - return braces[0] + base + braces[1];
277
- - }
278
- -
279
- - if (recurseTimes < 0) {
280
- - if (isRegExp(value)) {
281
- - return ctx.stylize(RegExp.prototype.toString.call(value), 'regexp');
282
- - } else {
283
- - return ctx.stylize('[Object]', 'special');
284
- - }
285
- - }
286
- -
287
- - ctx.seen.push(value);
288
- -
289
- - var output;
290
- - if (array) {
291
- - output = formatArray(ctx, value, recurseTimes, visibleKeys, keys);
292
- - } else {
293
- - output = keys.map(function(key) {
294
- - return formatProperty(ctx, value, recurseTimes, visibleKeys, key, array);
295
- - });
296
- - }
297
- -
298
- - ctx.seen.pop();
299
- -
300
- - return reduceToSingleString(output, base, braces);
301
- -}
302
- -
303
- -
304
- -function formatPrimitive(ctx, value) {
305
- - if (isUndefined(value))
306
- - return ctx.stylize('undefined', 'undefined');
307
- - if (isString(value)) {
308
- - var simple = '\'' + JSON.stringify(value).replace(/^"|"$/g, '')
309
- - .replace(/'/g, "\\'")
310
- - .replace(/\\"/g, '"') + '\'';
311
- - return ctx.stylize(simple, 'string');
312
- - }
313
- - if (isNumber(value)) {
314
- - // Format -0 as '-0'. Strict equality won't distinguish 0 from -0,
315
- - // so instead we use the fact that 1 / -0 < 0 whereas 1 / 0 > 0 .
316
- - if (value === 0 && 1 / value < 0)
317
- - return ctx.stylize('-0', 'number');
318
- - return ctx.stylize('' + value, 'number');
319
- - }
320
- - if (isBoolean(value))
321
- - return ctx.stylize('' + value, 'boolean');
322
- - // For some reason typeof null is "object", so special case here.
323
- - if (isNull(value))
324
- - return ctx.stylize('null', 'null');
325
- -}
326
- -
327
- -
328
- -function formatError(value) {
329
- - return '[' + Error.prototype.toString.call(value) + ']';
330
- -}
331
- -
332
- -
333
- -function formatArray(ctx, value, recurseTimes, visibleKeys, keys) {
334
- - var output = [];
335
- - for (var i = 0, l = value.length; i < l; ++i) {
336
- - if (hasOwnProperty(value, String(i))) {
337
- - output.push(formatProperty(ctx, value, recurseTimes, visibleKeys,
338
- - String(i), true));
339
- - } else {
340
- - output.push('');
341
- - }
342
- - }
343
- - keys.forEach(function(key) {
344
- - if (!key.match(/^\d+$/)) {
345
- - output.push(formatProperty(ctx, value, recurseTimes, visibleKeys,
346
- - key, true));
347
- - }
348
- - });
349
- - return output;
350
- -}
351
- -
352
- -
353
- -function formatProperty(ctx, value, recurseTimes, visibleKeys, key, array) {
354
- - var name, str, desc;
355
- - desc = Object.getOwnPropertyDescriptor(value, key) || { value: value[key] };
356
- - if (desc.get) {
357
- - if (desc.set) {
358
- - str = ctx.stylize('[Getter/Setter]', 'special');
359
- - } else {
360
- - str = ctx.stylize('[Getter]', 'special');
361
- - }
362
- - } else {
363
- - if (desc.set) {
364
- - str = ctx.stylize('[Setter]', 'special');
365
- - }
366
- - }
367
- - if (!hasOwnProperty(visibleKeys, key)) {
368
- - name = '[' + key + ']';
369
- - }
370
- - if (!str) {
371
- - if (ctx.seen.indexOf(desc.value) < 0) {
372
- - if (isNull(recurseTimes)) {
373
- - str = formatValue(ctx, desc.value, null);
374
- - } else {
375
- - str = formatValue(ctx, desc.value, recurseTimes - 1);
376
- - }
377
- - if (str.indexOf('\n') > -1) {
378
- - if (array) {
379
- - str = str.split('\n').map(function(line) {
380
- - return ' ' + line;
381
- - }).join('\n').substr(2);
382
- - } else {
383
- - str = '\n' + str.split('\n').map(function(line) {
384
- - return ' ' + line;
385
- - }).join('\n');
386
- - }
387
- - }
388
- - } else {
389
- - str = ctx.stylize('[Circular]', 'special');
390
- - }
391
- - }
392
- - if (isUndefined(name)) {
393
- - if (array && key.match(/^\d+$/)) {
394
- - return str;
395
- - }
396
- - name = JSON.stringify('' + key);
397
- - if (name.match(/^"([a-zA-Z_][a-zA-Z_0-9]*)"$/)) {
398
- - name = name.substr(1, name.length - 2);
399
- - name = ctx.stylize(name, 'name');
400
- - } else {
401
- - name = name.replace(/'/g, "\\'")
402
- - .replace(/\\"/g, '"')
403
- - .replace(/(^"|"$)/g, "'");
404
- - name = ctx.stylize(name, 'string');
405
- - }
406
- - }
407
- -
408
- - return name + ': ' + str;
409
- -}
410
- -
411
- -
412
- -function reduceToSingleString(output, base, braces) {
413
- - var numLinesEst = 0;
414
- - var length = output.reduce(function(prev, cur) {
415
- - numLinesEst++;
416
- - if (cur.indexOf('\n') >= 0) numLinesEst++;
417
- - return prev + cur.replace(/\u001b\[\d\d?m/g, '').length + 1;
418
- - }, 0);
419
- -
420
- - if (length > 60) {
421
- - return braces[0] +
422
- - (base === '' ? '' : base + '\n ') +
423
- - ' ' +
424
- - output.join(',\n ') +
425
- - ' ' +
426
- - braces[1];
427
- - }
428
- -
429
- - return braces[0] + base + ' ' + output.join(', ') + ' ' + braces[1];
430
- -}
431
- -
432
- -
433
- // NOTE: These type checking functions intentionally don't use `instanceof`
434
- // because it is fragile and can be easily faked with `Object.create()`.
435
- function isArray(ar) {
436
- @@ -522,166 +98,10 @@ function isPrimitive(arg) {
437
- exports.isPrimitive = isPrimitive;
438
-
439
- function isBuffer(arg) {
440
- - return arg instanceof Buffer;
441
- + return Buffer.isBuffer(arg);
442
- }
443
- exports.isBuffer = isBuffer;
444
-
445
- function objectToString(o) {
446
- return Object.prototype.toString.call(o);
447
- -}
448
- -
449
- -
450
- -function pad(n) {
451
- - return n < 10 ? '0' + n.toString(10) : n.toString(10);
452
- -}
453
- -
454
- -
455
- -var months = ['Jan', 'Feb', 'Mar', 'Apr', 'May', 'Jun', 'Jul', 'Aug', 'Sep',
456
- - 'Oct', 'Nov', 'Dec'];
457
- -
458
- -// 26 Feb 16:19:34
459
- -function timestamp() {
460
- - var d = new Date();
461
- - var time = [pad(d.getHours()),
462
- - pad(d.getMinutes()),
463
- - pad(d.getSeconds())].join(':');
464
- - return [d.getDate(), months[d.getMonth()], time].join(' ');
465
- -}
466
- -
467
- -
468
- -// log is just a thin wrapper to console.log that prepends a timestamp
469
- -exports.log = function() {
470
- - console.log('%s - %s', timestamp(), exports.format.apply(exports, arguments));
471
- -};
472
- -
473
- -
474
- -/**
475
- - * Inherit the prototype methods from one constructor into another.
476
- - *
477
- - * The Function.prototype.inherits from lang.js rewritten as a standalone
478
- - * function (not on Function.prototype). NOTE: If this file is to be loaded
479
- - * during bootstrapping this function needs to be rewritten using some native
480
- - * functions as prototype setup using normal JavaScript does not work as
481
- - * expected during bootstrapping (see mirror.js in r114903).
482
- - *
483
- - * @param {function} ctor Constructor function which needs to inherit the
484
- - * prototype.
485
- - * @param {function} superCtor Constructor function to inherit prototype from.
486
- - */
487
- -exports.inherits = function(ctor, superCtor) {
488
- - ctor.super_ = superCtor;
489
- - ctor.prototype = Object.create(superCtor.prototype, {
490
- - constructor: {
491
- - value: ctor,
492
- - enumerable: false,
493
- - writable: true,
494
- - configurable: true
495
- - }
496
- - });
497
- -};
498
- -
499
- -exports._extend = function(origin, add) {
500
- - // Don't do anything if add isn't an object
501
- - if (!add || !isObject(add)) return origin;
502
- -
503
- - var keys = Object.keys(add);
504
- - var i = keys.length;
505
- - while (i--) {
506
- - origin[keys[i]] = add[keys[i]];
507
- - }
508
- - return origin;
509
- -};
510
- -
511
- -function hasOwnProperty(obj, prop) {
512
- - return Object.prototype.hasOwnProperty.call(obj, prop);
513
- -}
514
- -
515
- -
516
- -// Deprecated old stuff.
517
- -
518
- -exports.p = exports.deprecate(function() {
519
- - for (var i = 0, len = arguments.length; i < len; ++i) {
520
- - console.error(exports.inspect(arguments[i]));
521
- - }
522
- -}, 'util.p: Use console.error() instead');
523
- -
524
- -
525
- -exports.exec = exports.deprecate(function() {
526
- - return require('child_process').exec.apply(this, arguments);
527
- -}, 'util.exec is now called `child_process.exec`.');
528
- -
529
- -
530
- -exports.print = exports.deprecate(function() {
531
- - for (var i = 0, len = arguments.length; i < len; ++i) {
532
- - process.stdout.write(String(arguments[i]));
533
- - }
534
- -}, 'util.print: Use console.log instead');
535
- -
536
- -
537
- -exports.puts = exports.deprecate(function() {
538
- - for (var i = 0, len = arguments.length; i < len; ++i) {
539
- - process.stdout.write(arguments[i] + '\n');
540
- - }
541
- -}, 'util.puts: Use console.log instead');
542
- -
543
- -
544
- -exports.debug = exports.deprecate(function(x) {
545
- - process.stderr.write('DEBUG: ' + x + '\n');
546
- -}, 'util.debug: Use console.error instead');
547
- -
548
- -
549
- -exports.error = exports.deprecate(function(x) {
550
- - for (var i = 0, len = arguments.length; i < len; ++i) {
551
- - process.stderr.write(arguments[i] + '\n');
552
- - }
553
- -}, 'util.error: Use console.error instead');
554
- -
555
- -
556
- -exports.pump = exports.deprecate(function(readStream, writeStream, callback) {
557
- - var callbackCalled = false;
558
- -
559
- - function call(a, b, c) {
560
- - if (callback && !callbackCalled) {
561
- - callback(a, b, c);
562
- - callbackCalled = true;
563
- - }
564
- - }
565
- -
566
- - readStream.addListener('data', function(chunk) {
567
- - if (writeStream.write(chunk) === false) readStream.pause();
568
- - });
569
- -
570
- - writeStream.addListener('drain', function() {
571
- - readStream.resume();
572
- - });
573
- -
574
- - readStream.addListener('end', function() {
575
- - writeStream.end();
576
- - });
577
- -
578
- - readStream.addListener('close', function() {
579
- - call();
580
- - });
581
- -
582
- - readStream.addListener('error', function(err) {
583
- - writeStream.end();
584
- - call(err);
585
- - });
586
- -
587
- - writeStream.addListener('error', function(err) {
588
- - readStream.destroy();
589
- - call(err);
590
- - });
591
- -}, 'util.pump(): Use readableStream.pipe() instead');
592
- -
593
- -
594
- -var uv;
595
- -exports._errnoException = function(err, syscall) {
596
- - if (isUndefined(uv)) uv = process.binding('uv');
597
- - var errname = uv.errname(err);
598
- - var e = new Error(syscall + ' ' + errname);
599
- - e.code = errname;
600
- - e.errno = errname;
601
- - e.syscall = syscall;
602
- - return e;
603
- -};
604
- +}
@@ -1,66 +0,0 @@
1
- /* */
2
- (function(Buffer) {
3
- function isArray(ar) {
4
- return Array.isArray(ar);
5
- }
6
- exports.isArray = isArray;
7
- function isBoolean(arg) {
8
- return typeof arg === 'boolean';
9
- }
10
- exports.isBoolean = isBoolean;
11
- function isNull(arg) {
12
- return arg === null;
13
- }
14
- exports.isNull = isNull;
15
- function isNullOrUndefined(arg) {
16
- return arg == null;
17
- }
18
- exports.isNullOrUndefined = isNullOrUndefined;
19
- function isNumber(arg) {
20
- return typeof arg === 'number';
21
- }
22
- exports.isNumber = isNumber;
23
- function isString(arg) {
24
- return typeof arg === 'string';
25
- }
26
- exports.isString = isString;
27
- function isSymbol(arg) {
28
- return typeof arg === 'symbol';
29
- }
30
- exports.isSymbol = isSymbol;
31
- function isUndefined(arg) {
32
- return arg === void 0;
33
- }
34
- exports.isUndefined = isUndefined;
35
- function isRegExp(re) {
36
- return isObject(re) && objectToString(re) === '[object RegExp]';
37
- }
38
- exports.isRegExp = isRegExp;
39
- function isObject(arg) {
40
- return typeof arg === 'object' && arg !== null;
41
- }
42
- exports.isObject = isObject;
43
- function isDate(d) {
44
- return isObject(d) && objectToString(d) === '[object Date]';
45
- }
46
- exports.isDate = isDate;
47
- function isError(e) {
48
- return isObject(e) && (objectToString(e) === '[object Error]' || e instanceof Error);
49
- }
50
- exports.isError = isError;
51
- function isFunction(arg) {
52
- return typeof arg === 'function';
53
- }
54
- exports.isFunction = isFunction;
55
- function isPrimitive(arg) {
56
- return arg === null || typeof arg === 'boolean' || typeof arg === 'number' || typeof arg === 'string' || typeof arg === 'symbol' || typeof arg === 'undefined';
57
- }
58
- exports.isPrimitive = isPrimitive;
59
- function isBuffer(arg) {
60
- return Buffer.isBuffer(arg);
61
- }
62
- exports.isBuffer = isBuffer;
63
- function objectToString(o) {
64
- return Object.prototype.toString.call(o);
65
- }
66
- })(require("buffer").Buffer);