search_biomodel 0.1.2 → 1.0.0
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- data/Gemfile +1 -2
- data/Gemfile.lock +17 -3
- data/README.rdoc +9 -2
- data/VERSION +1 -1
- data/lib/search_biomodel.rb +11 -8
- data/search_biomodel.gemspec +1055 -9
- data/search_biomodel/ruby/1.8/bin/jeweler +19 -0
- data/search_biomodel/ruby/1.8/bin/nokogiri +19 -0
- data/search_biomodel/ruby/1.8/bin/rackup +19 -0
- data/search_biomodel/ruby/1.8/bin/rake +19 -0
- data/search_biomodel/ruby/1.8/bin/rcov +19 -0
- data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +89 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +229 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +232 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +296 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +55364 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +109 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +23 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +197 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +160 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +63 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +334 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +40 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +225 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +150 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +546 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +77 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +240 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +156 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +479 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +104 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +48 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +146 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +719 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +273 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +40 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +44 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +110 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +55 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +2 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +81 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +11 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +26 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +23 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +45 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +63 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +53 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +160 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +77 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +49 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +46 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +2 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +5 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +60 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +8 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +223 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +18 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +28 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +198 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +67 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +98 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +81 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +91 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +56 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +90 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +16 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +15 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +10 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +232 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +164 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +142 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +128 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +284 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +135 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +95 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +166 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +22 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +59 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +216 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +81 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +103 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +86 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +13 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +71 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +102 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +158 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +54 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +149 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +70 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +382 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +31 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +49 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +244 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler.rb +177 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +36 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +50 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +31 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +82 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +59 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +30 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +87 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +287 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +61 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +43 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +29 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +41 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +162 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +44 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +95 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +38 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +38 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +110 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +224 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +48 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +19 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Rakefile +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/flunking.rb +7 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/helper.rb +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bundler_setup.erb +10 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/default.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/support/env.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/jeweler_tasks.erb +31 -0
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- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/rcov.js +42 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/screen.css +270 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/version.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcovrt.so +0 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/setup.rb +1588 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_01.rb +7 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_02.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_03.rb +20 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_04.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-new.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-old.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_06.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/call_site_analyzer_test.rb +171 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/code_coverage_analyzer_test.rb +220 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-all.out +7 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-diff.out +11 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-original.out +5 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-no-color.out +12 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff.out +12 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/gcc-text.out +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.html +651 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_04_rb.html +641 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/file_statistics_test.rb +471 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/functional_test.rb +91 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/test_helper.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/turn_off_rcovrt.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts +2 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md +533 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile +4 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md +39 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile +40 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb +161 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/hash.rb +70 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb +51 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/time.rb +22 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb +83 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap.rb +24 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb +59 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/request.rb +61 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/xml.rb +184 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/document.rb +112 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb +96 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/request.rb +35 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsse.rb +156 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/savon.gemspec +30 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/gzip/message.gz +0 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/another_soap_fault.xml +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/authentication.xml +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/header.xml +13 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/list.xml +18 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/multi_ref.xml +39 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault.xml +8 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault12.xml +18 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/authentication.xml +63 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/geotrust.xml +156 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/namespaced_actions.xml +307 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/no_namespace.xml +115 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/soap12.xml +11 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/two_bindings.xml +25 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/client_spec.rb +354 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/hash_spec.rb +121 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/object_spec.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/string_spec.rb +57 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/time_spec.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/http/error_spec.rb +52 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/savon_spec.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/fault_spec.rb +89 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/request_spec.rb +45 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/response_spec.rb +181 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/xml_spec.rb +341 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap_spec.rb +21 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/document_spec.rb +132 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/parser_spec.rb +107 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/request_spec.rb +15 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsse_spec.rb +232 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/spec_helper.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/endpoint.rb +25 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/fixture.rb +37 -0
- data/search_biomodel/ruby/1.8/specifications/builder-3.0.0.gemspec +36 -0
- data/search_biomodel/ruby/1.8/specifications/git-1.2.5.gemspec +30 -0
- data/search_biomodel/ruby/1.8/specifications/gyoku-0.4.4.gemspec +41 -0
- data/search_biomodel/ruby/1.8/specifications/httpi-0.9.4.gemspec +49 -0
- data/search_biomodel/ruby/1.8/specifications/jeweler-1.6.2.gemspec +79 -0
- data/search_biomodel/ruby/1.8/specifications/nokogiri-1.4.6.gemspec +53 -0
- data/search_biomodel/ruby/1.8/specifications/nori-1.0.1.gemspec +38 -0
- data/search_biomodel/ruby/1.8/specifications/pyu-ntlm-http-0.1.3.1.gemspec +31 -0
- data/search_biomodel/ruby/1.8/specifications/rack-1.3.0.gemspec +57 -0
- data/search_biomodel/ruby/1.8/specifications/rake-0.9.2.gemspec +43 -0
- data/search_biomodel/ruby/1.8/specifications/rcov-0.9.9.gemspec +34 -0
- data/search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec +55 -0
- data/test/test_search_biomodel.rb +29 -4
- metadata +1071 -36
- data/test.rb +0 -1
@@ -0,0 +1,191 @@
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# -*- ruby -*-
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require 'rubygems'
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gem 'hoe', '>= 2.1.0'
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require 'hoe'
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windows = RUBY_PLATFORM =~ /(mswin|mingw)/i
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java = RUBY_PLATFORM =~ /java/
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GENERATED_PARSER = "lib/nokogiri/css/parser.rb"
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GENERATED_TOKENIZER = "lib/nokogiri/css/tokenizer.rb"
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CROSS_DIR = File.join(File.dirname(__FILE__), 'tmp', 'cross')
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# Make sure hoe-debugging is installed
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Hoe.plugin :debugging
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Hoe.plugin :git
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HOE = Hoe.spec 'nokogiri' do
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developer('Aaron Patterson', 'aaronp@rubyforge.org')
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developer('Mike Dalessio', 'mike.dalessio@gmail.com')
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self.readme_file = ['README', ENV['HLANG'], 'rdoc'].compact.join('.')
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self.history_file = ['CHANGELOG', ENV['HLANG'], 'rdoc'].compact.join('.')
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self.extra_rdoc_files = FileList['*.rdoc','ext/nokogiri/*.c']
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self.clean_globs = [
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"ext/nokogiri/*.dll",
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'lib/nokogiri/*.{o,so,bundle,a,log,dll}',
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'lib/nokogiri/nokogiri.rb',
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'lib/nokogiri/1.{8,9}',
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GENERATED_PARSER,
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GENERATED_TOKENIZER,
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CROSS_DIR
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]
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%w{ racc rexical rake-compiler }.each do |dep|
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extra_dev_deps << [dep, '>= 0']
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end
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extra_dev_deps << ["minitest", ">= 1.6.0"]
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self.spec_extras = { :extensions => ["ext/nokogiri/extconf.rb"] }
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self.testlib = :minitest
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end
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Hoe.add_include_dirs '.'
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task :ws_docs do
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title = "#{HOE.name}-#{HOE.version} Documentation"
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options = []
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options << "--main=#{HOE.readme_file}"
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options << '--format=activerecord'
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options << '--threads=1'
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options << "--title=#{title.inspect}"
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options += HOE.spec.require_paths
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options += HOE.spec.extra_rdoc_files
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require 'rdoc/rdoc'
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ENV['RAILS_ROOT'] ||= File.expand_path(File.join('..', 'nokogiri_ws'))
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RDoc::RDoc.new.document options
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end
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unless java
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gem 'rake-compiler', '>= 0.4.1'
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require "rake/extensiontask"
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RET = Rake::ExtensionTask.new("nokogiri", HOE.spec) do |ext|
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ext.lib_dir = File.join(*['lib', 'nokogiri', ENV['FAT_DIR']].compact)
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ext.config_options << ENV['EXTOPTS']
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ext.cross_compile = true
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ext.cross_platform = ["x86-mingw32", "x86-mswin32-60"]
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ext.cross_config_options <<
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"--with-xml2-include=#{File.join(CROSS_DIR, 'include', 'libxml2')}"
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ext.cross_config_options <<
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"--with-xml2-lib=#{File.join(CROSS_DIR, 'lib')}"
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ext.cross_config_options << "--with-iconv-dir=#{CROSS_DIR}"
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ext.cross_config_options << "--with-xslt-dir=#{CROSS_DIR}"
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ext.cross_config_options << "--with-zlib-dir=#{CROSS_DIR}"
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end
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end
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namespace :gem do
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namespace :dev do
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task :spec => [ GENERATED_PARSER, GENERATED_TOKENIZER ] do
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File.open("#{HOE.name}.gemspec", 'w') do |f|
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HOE.spec.version = "#{HOE.version}.#{Time.now.strftime("%Y%m%d%H%M%S")}"
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f.write(HOE.spec.to_ruby)
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end
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end
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end
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desc "Build a gem targetted for JRuby"
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task :jruby => ['gem:jruby:spec'] do
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raise "ERROR: please run this task under jruby" unless java
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system "gem build nokogiri.gemspec"
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FileUtils.mkdir_p "pkg"
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FileUtils.mv Dir.glob("nokogiri*-java.gem"), "pkg"
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end
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namespace :jruby do
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task :spec => [GENERATED_PARSER, GENERATED_TOKENIZER, :"gem:jruby:dlls"] do
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File.open("#{HOE.name}.gemspec", 'w') do |f|
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HOE.spec.platform = 'java'
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HOE.spec.files << GENERATED_PARSER
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HOE.spec.files << GENERATED_TOKENIZER
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HOE.spec.files += Dir["ext/nokogiri/*.dll"]
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HOE.spec.extensions = []
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HOE.spec.add_dependency 'weakling', '>= 0.0.3'
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f.write(HOE.spec.to_ruby)
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end
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end
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task :dlls do
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def run cmd
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puts(cmd) || system(cmd) || raise("command failed")
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end
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dlldir = "tmp/dlls"
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FileUtils.mkdir_p dlldir
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Dir.chdir dlldir do
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unless File.exists? "nokogiri-1.4.3.1-java.gem"
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run "wget http://rubygems.org/downloads/nokogiri-1.4.3.1-java.gem"
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end
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unless File.exists? "data.tar.gz"
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run "tar -xf nokogiri-1.4.3.1-java.gem"
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end
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FileUtils.rm_rf "unpack"
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FileUtils.mkdir "unpack"
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Dir.chdir "unpack" do
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run "tar -zxf ../data.tar.gz"
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end
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end
|
132
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133
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Dir["#{dlldir}/unpack/ext/nokogiri/*.dll"].each do |file|
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cp file, "ext/nokogiri"
|
135
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end
|
136
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end
|
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end
|
138
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|
139
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task :spec => ['gem:dev:spec']
|
140
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end
|
141
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+
|
142
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file GENERATED_PARSER => "lib/nokogiri/css/parser.y" do |t|
|
143
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racc = Config::CONFIG['target_os'] =~ /mswin32/ ? '' : `which racc`.strip
|
144
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+
racc = "#{::Config::CONFIG['bindir']}/racc" if racc.empty?
|
145
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+
sh "#{racc} -l -o #{t.name} #{t.prerequisites.first}"
|
146
|
+
end
|
147
|
+
|
148
|
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file GENERATED_TOKENIZER => "lib/nokogiri/css/tokenizer.rex" do |t|
|
149
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sh "rex --independent -o #{t.name} #{t.prerequisites.first}"
|
150
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end
|
151
|
+
|
152
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require 'tasks/test'
|
153
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begin
|
154
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require 'tasks/cross_compile' unless java
|
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rescue RuntimeError => e
|
156
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warn "WARNING: Could not perform some cross-compiling: #{e}"
|
157
|
+
end
|
158
|
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|
159
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+
desc "set environment variables to build and/or test with debug options"
|
160
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task :debug do
|
161
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+
ENV['NOKOGIRI_DEBUG'] = "true"
|
162
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+
ENV['CFLAGS'] ||= ""
|
163
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ENV['CFLAGS'] += " -DDEBUG"
|
164
|
+
end
|
165
|
+
|
166
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# required_ruby_version
|
167
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+
|
168
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+
# Only do this on unix, since we can't build on windows
|
169
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+
unless windows || java || ENV['NOKOGIRI_FFI']
|
170
|
+
[:compile, :check_manifest].each do |task_name|
|
171
|
+
Rake::Task[task_name].prerequisites << GENERATED_PARSER
|
172
|
+
Rake::Task[task_name].prerequisites << GENERATED_TOKENIZER
|
173
|
+
end
|
174
|
+
|
175
|
+
Rake::Task[:test].prerequisites << :compile
|
176
|
+
Rake::Task[:test].prerequisites << :check_extra_deps
|
177
|
+
if Hoe.plugins.include?(:debugging)
|
178
|
+
['valgrind', 'valgrind:mem', 'valgrind:mem0'].each do |task_name|
|
179
|
+
Rake::Task["test:#{task_name}"].prerequisites << :compile
|
180
|
+
end
|
181
|
+
end
|
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|
+
else
|
183
|
+
[:test, :check_manifest].each do |task_name|
|
184
|
+
if Rake::Task[task_name]
|
185
|
+
Rake::Task[task_name].prerequisites << GENERATED_PARSER
|
186
|
+
Rake::Task[task_name].prerequisites << GENERATED_TOKENIZER
|
187
|
+
end
|
188
|
+
end
|
189
|
+
end
|
190
|
+
|
191
|
+
# vim: syntax=Ruby
|
@@ -0,0 +1,54 @@
|
|
1
|
+
#!/usr/bin/env ruby
|
2
|
+
require 'optparse'
|
3
|
+
require 'open-uri'
|
4
|
+
require 'irb'
|
5
|
+
require 'uri'
|
6
|
+
require 'rubygems'
|
7
|
+
require 'nokogiri'
|
8
|
+
|
9
|
+
parse_class = Nokogiri
|
10
|
+
encoding = nil
|
11
|
+
|
12
|
+
opts = OptionParser.new do |opts|
|
13
|
+
opts.banner = "Nokogiri: an HTML, XML, SAX, and Reader parser"
|
14
|
+
opts.define_head "Usage: nokogiri <uri|path> [options]"
|
15
|
+
opts.separator ""
|
16
|
+
opts.separator "Examples:"
|
17
|
+
opts.separator " nokogiri http://www.ruby-lang.org/"
|
18
|
+
opts.separator " nokogiri ./public/index.html"
|
19
|
+
opts.separator ""
|
20
|
+
opts.separator "Options:"
|
21
|
+
|
22
|
+
opts.on("--type [TYPE]", [:xml, :html]) do |v|
|
23
|
+
parse_class = {:xml => Nokogiri::XML, :html => Nokogiri::HTML}[v]
|
24
|
+
end
|
25
|
+
|
26
|
+
opts.on("-E", "--encoding encoding", "Read as encoding (default #{encoding})") do |v|
|
27
|
+
encoding = v
|
28
|
+
end
|
29
|
+
|
30
|
+
opts.on_tail("-?", "--help", "Show this message") do
|
31
|
+
puts opts
|
32
|
+
exit
|
33
|
+
end
|
34
|
+
|
35
|
+
opts.on_tail("-v", "--version", "Show version") do
|
36
|
+
require 'yaml'
|
37
|
+
puts Nokogiri::VERSION_INFO.to_yaml
|
38
|
+
exit
|
39
|
+
end
|
40
|
+
end
|
41
|
+
opts.parse!
|
42
|
+
|
43
|
+
uri = ARGV.shift
|
44
|
+
|
45
|
+
if uri.to_s.strip.empty?
|
46
|
+
puts opts
|
47
|
+
exit 1
|
48
|
+
end
|
49
|
+
|
50
|
+
@doc = parse_class.parse(open(uri).read, nil, encoding)
|
51
|
+
|
52
|
+
puts "Your document is stored in @doc..."
|
53
|
+
IRB.start
|
54
|
+
|
@@ -0,0 +1,515 @@
|
|
1
|
+
|
2
|
+
SHELL = /bin/sh
|
3
|
+
|
4
|
+
#### Start of system configuration section. ####
|
5
|
+
|
6
|
+
srcdir = .
|
7
|
+
topdir = /usr/lib/ruby/1.8/x86_64-linux
|
8
|
+
hdrdir = $(topdir)
|
9
|
+
VPATH = $(srcdir):$(topdir):$(hdrdir)
|
10
|
+
exec_prefix = $(prefix)
|
11
|
+
prefix = $(DESTDIR)/usr
|
12
|
+
sharedstatedir = $(prefix)/com
|
13
|
+
mandir = $(prefix)/share/man
|
14
|
+
psdir = $(docdir)
|
15
|
+
oldincludedir = $(DESTDIR)/usr/include
|
16
|
+
localedir = $(datarootdir)/locale
|
17
|
+
bindir = $(exec_prefix)/bin
|
18
|
+
libexecdir = $(prefix)/lib/ruby1.8
|
19
|
+
sitedir = $(DESTDIR)/usr/local/lib/site_ruby
|
20
|
+
htmldir = $(docdir)
|
21
|
+
vendorarchdir = $(vendorlibdir)/$(sitearch)
|
22
|
+
includedir = $(prefix)/include
|
23
|
+
infodir = $(prefix)/share/info
|
24
|
+
vendorlibdir = $(vendordir)/$(ruby_version)
|
25
|
+
sysconfdir = $(DESTDIR)/etc
|
26
|
+
libdir = $(exec_prefix)/lib
|
27
|
+
sbindir = $(exec_prefix)/sbin
|
28
|
+
rubylibdir = $(libdir)/ruby/$(ruby_version)
|
29
|
+
docdir = $(datarootdir)/doc/$(PACKAGE)
|
30
|
+
dvidir = $(docdir)
|
31
|
+
vendordir = $(libdir)/ruby/vendor_ruby
|
32
|
+
datarootdir = $(prefix)/share
|
33
|
+
pdfdir = $(docdir)
|
34
|
+
archdir = $(rubylibdir)/$(arch)
|
35
|
+
sitearchdir = $(sitelibdir)/$(sitearch)
|
36
|
+
datadir = $(datarootdir)
|
37
|
+
localstatedir = $(DESTDIR)/var
|
38
|
+
sitelibdir = $(sitedir)/$(ruby_version)
|
39
|
+
|
40
|
+
CC = gcc
|
41
|
+
LIBRUBY = $(LIBRUBY_SO)
|
42
|
+
LIBRUBY_A = lib$(RUBY_SO_NAME)-static.a
|
43
|
+
LIBRUBYARG_SHARED = -l$(RUBY_SO_NAME)
|
44
|
+
LIBRUBYARG_STATIC = -l$(RUBY_SO_NAME)-static
|
45
|
+
|
46
|
+
RUBY_EXTCONF_H =
|
47
|
+
CFLAGS = -fPIC -fno-strict-aliasing -g -g -O2 -fPIC $(cflags) -g -DXP_UNIX -O3 -Wall -Wcast-qual -Wwrite-strings -Wconversion -Wmissing-noreturn -Winline
|
48
|
+
INCFLAGS = -I. -I. -I/usr/lib/ruby/1.8/x86_64-linux -I.
|
49
|
+
DEFS =
|
50
|
+
CPPFLAGS = -DHAVE_ICONV_OPEN -DHAVE_XMLFIRSTELEMENTCHILD -DHAVE_XMLRELAXNGSETPARSERSTRUCTUREDERRORS -DHAVE_XMLRELAXNGSETPARSERSTRUCTUREDERRORS -DHAVE_XMLRELAXNGSETVALIDSTRUCTUREDERRORS -DHAVE_XMLSCHEMASETVALIDSTRUCTUREDERRORS -DHAVE_XMLSCHEMASETPARSERSTRUCTUREDERRORS -I-I-I/opt/local/include -I-I-I/usr/local/include -I-I-I/usr/include -I-I-I/usr/include -I-I-I/usr/include/libxml2 -I/opt/local/include/libxml2 -I/usr/local/include/libxml2 -I-I/opt/local/include -I-I/usr/local/include -I-I/usr/include -I-I/usr/include -I-I/usr/include/libxml2 -I/opt/local/include -I/usr/local/include -I/usr/include -I/usr/include -I/usr/include/libxml2
|
51
|
+
CXXFLAGS = $(CFLAGS)
|
52
|
+
ldflags = -L. -Wl,-Bsymbolic-functions -rdynamic -Wl,-export-dynamic
|
53
|
+
dldflags =
|
54
|
+
archflag =
|
55
|
+
DLDFLAGS = $(ldflags) $(dldflags) $(archflag)
|
56
|
+
LDSHARED = $(CC) -shared
|
57
|
+
AR = ar
|
58
|
+
EXEEXT =
|
59
|
+
|
60
|
+
RUBY_INSTALL_NAME = ruby1.8
|
61
|
+
RUBY_SO_NAME = ruby1.8
|
62
|
+
arch = x86_64-linux
|
63
|
+
sitearch = x86_64-linux
|
64
|
+
ruby_version = 1.8
|
65
|
+
ruby = /usr/bin/ruby1.8
|
66
|
+
RUBY = $(ruby)
|
67
|
+
RM = rm -f
|
68
|
+
MAKEDIRS = mkdir -p
|
69
|
+
INSTALL = /usr/bin/install -c
|
70
|
+
INSTALL_PROG = $(INSTALL) -m 0755
|
71
|
+
INSTALL_DATA = $(INSTALL) -m 644
|
72
|
+
COPY = cp
|
73
|
+
|
74
|
+
#### End of system configuration section. ####
|
75
|
+
|
76
|
+
preload =
|
77
|
+
|
78
|
+
libpath = . $(libdir) /opt/local/lib /usr/local/lib /usr/lib
|
79
|
+
LIBPATH = -L. -L$(libdir) -L/opt/local/lib -L/usr/local/lib -L/usr/lib
|
80
|
+
DEFFILE =
|
81
|
+
|
82
|
+
CLEANFILES = mkmf.log
|
83
|
+
DISTCLEANFILES =
|
84
|
+
|
85
|
+
extout =
|
86
|
+
extout_prefix =
|
87
|
+
target_prefix = /nokogiri
|
88
|
+
LOCAL_LIBS =
|
89
|
+
LIBS = $(LIBRUBYARG_SHARED) -lexslt -lxslt -lxml2 -lpthread -lrt -ldl -lcrypt -lm -lc
|
90
|
+
SRCS = xml_relax_ng.c xml_entity_reference.c xml_entity_decl.c xml_cdata.c xml_encoding_handler.c xml_node.c xml_node_set.c xml_dtd.c html_entity_lookup.c html_sax_parser_context.c xml_xpath_context.c xml_libxml2_hacks.c xml_text.c xml_element_decl.c xml_reader.c xml_attribute_decl.c xml_sax_parser_context.c xslt_stylesheet.c xml_schema.c html_document.c xml_namespace.c html_element_description.c xml_processing_instruction.c xml_io.c nokogiri.c xml_attr.c xml_sax_parser.c xml_element_content.c xml_comment.c xml_syntax_error.c xml_document.c xml_document_fragment.c xml_sax_push_parser.c
|
91
|
+
OBJS = xml_relax_ng.o xml_entity_reference.o xml_entity_decl.o xml_cdata.o xml_encoding_handler.o xml_node.o xml_node_set.o xml_dtd.o html_entity_lookup.o html_sax_parser_context.o xml_xpath_context.o xml_libxml2_hacks.o xml_text.o xml_element_decl.o xml_reader.o xml_attribute_decl.o xml_sax_parser_context.o xslt_stylesheet.o xml_schema.o html_document.o xml_namespace.o html_element_description.o xml_processing_instruction.o xml_io.o nokogiri.o xml_attr.o xml_sax_parser.o xml_element_content.o xml_comment.o xml_syntax_error.o xml_document.o xml_document_fragment.o xml_sax_push_parser.o
|
92
|
+
TARGET = nokogiri
|
93
|
+
DLLIB = $(TARGET).so
|
94
|
+
EXTSTATIC =
|
95
|
+
STATIC_LIB =
|
96
|
+
|
97
|
+
BINDIR = $(bindir)
|
98
|
+
RUBYCOMMONDIR = $(sitedir)$(target_prefix)
|
99
|
+
RUBYLIBDIR = /home/cspc018/Work/Repos/gems/search_biomodel/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib$(target_prefix)
|
100
|
+
RUBYARCHDIR = /home/cspc018/Work/Repos/gems/search_biomodel/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib$(target_prefix)
|
101
|
+
|
102
|
+
TARGET_SO = $(DLLIB)
|
103
|
+
CLEANLIBS = $(TARGET).so $(TARGET).il? $(TARGET).tds $(TARGET).map
|
104
|
+
CLEANOBJS = *.o *.a *.s[ol] *.pdb *.exp *.bak
|
105
|
+
|
106
|
+
all: $(DLLIB)
|
107
|
+
static: $(STATIC_LIB)
|
108
|
+
|
109
|
+
clean:
|
110
|
+
@-$(RM) $(CLEANLIBS) $(CLEANOBJS) $(CLEANFILES)
|
111
|
+
|
112
|
+
distclean: clean
|
113
|
+
@-$(RM) Makefile $(RUBY_EXTCONF_H) conftest.* mkmf.log
|
114
|
+
@-$(RM) core ruby$(EXEEXT) *~ $(DISTCLEANFILES)
|
115
|
+
|
116
|
+
realclean: distclean
|
117
|
+
install: install-so install-rb
|
118
|
+
|
119
|
+
install-so: $(RUBYARCHDIR)
|
120
|
+
install-so: $(RUBYARCHDIR)/$(DLLIB)
|
121
|
+
$(RUBYARCHDIR)/$(DLLIB): $(DLLIB)
|
122
|
+
$(INSTALL_PROG) $(DLLIB) $(RUBYARCHDIR)
|
123
|
+
install-rb: pre-install-rb install-rb-default
|
124
|
+
install-rb-default: pre-install-rb-default
|
125
|
+
pre-install-rb: Makefile
|
126
|
+
pre-install-rb-default: Makefile
|
127
|
+
$(RUBYARCHDIR):
|
128
|
+
$(MAKEDIRS) $@
|
129
|
+
|
130
|
+
site-install: site-install-so site-install-rb
|
131
|
+
site-install-so: install-so
|
132
|
+
site-install-rb: install-rb
|
133
|
+
|
134
|
+
.SUFFIXES: .c .m .cc .cxx .cpp .C .o
|
135
|
+
|
136
|
+
.cc.o:
|
137
|
+
$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
|
138
|
+
|
139
|
+
.cxx.o:
|
140
|
+
$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
|
141
|
+
|
142
|
+
.cpp.o:
|
143
|
+
$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
|
144
|
+
|
145
|
+
.C.o:
|
146
|
+
$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
|
147
|
+
|
148
|
+
.c.o:
|
149
|
+
$(CC) $(INCFLAGS) $(CPPFLAGS) $(CFLAGS) -c $<
|
150
|
+
|
151
|
+
$(DLLIB): $(OBJS) Makefile
|
152
|
+
@-$(RM) $@
|
153
|
+
$(LDSHARED) -o $@ $(OBJS) $(LIBPATH) $(DLDFLAGS) $(LOCAL_LIBS) $(LIBS)
|
154
|
+
|
155
|
+
|
156
|
+
|
157
|
+
###
|
158
|
+
html_document.o: html_document.c html_document.h nokogiri.h xml_io.h \
|
159
|
+
xml_document.h html_entity_lookup.h xml_node.h xml_text.h \
|
160
|
+
xml_cdata.h xml_attr.h xml_processing_instruction.h \
|
161
|
+
xml_entity_reference.h xml_document_fragment.h xml_comment.h \
|
162
|
+
xml_node_set.h xml_dtd.h xml_attribute_decl.h xml_element_decl.h \
|
163
|
+
xml_entity_decl.h xml_xpath_context.h xml_element_content.h \
|
164
|
+
xml_sax_parser_context.h xml_sax_parser.h xml_sax_push_parser.h \
|
165
|
+
xml_reader.h html_sax_parser_context.h xslt_stylesheet.h \
|
166
|
+
xml_syntax_error.h xml_schema.h xml_relax_ng.h \
|
167
|
+
html_element_description.h xml_namespace.h xml_encoding_handler.h
|
168
|
+
|
169
|
+
html_element_description.o: html_element_description.c \
|
170
|
+
html_element_description.h nokogiri.h xml_io.h xml_document.h \
|
171
|
+
html_entity_lookup.h html_document.h xml_node.h xml_text.h \
|
172
|
+
xml_cdata.h xml_attr.h xml_processing_instruction.h \
|
173
|
+
xml_entity_reference.h xml_document_fragment.h xml_comment.h \
|
174
|
+
xml_node_set.h xml_dtd.h xml_attribute_decl.h xml_element_decl.h \
|
175
|
+
xml_entity_decl.h xml_xpath_context.h xml_element_content.h \
|
176
|
+
xml_sax_parser_context.h xml_sax_parser.h xml_sax_push_parser.h \
|
177
|
+
xml_reader.h html_sax_parser_context.h xslt_stylesheet.h \
|
178
|
+
xml_syntax_error.h xml_schema.h xml_relax_ng.h xml_namespace.h \
|
179
|
+
xml_encoding_handler.h
|
180
|
+
|
181
|
+
html_entity_lookup.o: html_entity_lookup.c html_entity_lookup.h \
|
182
|
+
nokogiri.h xml_io.h xml_document.h html_document.h xml_node.h \
|
183
|
+
xml_text.h xml_cdata.h xml_attr.h xml_processing_instruction.h \
|
184
|
+
xml_entity_reference.h xml_document_fragment.h xml_comment.h \
|
185
|
+
xml_node_set.h xml_dtd.h xml_attribute_decl.h xml_element_decl.h \
|
186
|
+
xml_entity_decl.h xml_xpath_context.h xml_element_content.h \
|
187
|
+
xml_sax_parser_context.h xml_sax_parser.h xml_sax_push_parser.h \
|
188
|
+
xml_reader.h html_sax_parser_context.h xslt_stylesheet.h \
|
189
|
+
xml_syntax_error.h xml_schema.h xml_relax_ng.h \
|
190
|
+
html_element_description.h xml_namespace.h xml_encoding_handler.h
|
191
|
+
|
192
|
+
html_sax_parser_context.o: html_sax_parser_context.c \
|
193
|
+
html_sax_parser_context.h nokogiri.h xml_io.h xml_document.h \
|
194
|
+
html_entity_lookup.h html_document.h xml_node.h xml_text.h \
|
195
|
+
xml_cdata.h xml_attr.h xml_processing_instruction.h \
|
196
|
+
xml_entity_reference.h xml_document_fragment.h xml_comment.h \
|
197
|
+
xml_node_set.h xml_dtd.h xml_attribute_decl.h xml_element_decl.h \
|
198
|
+
xml_entity_decl.h xml_xpath_context.h xml_element_content.h \
|
199
|
+
xml_sax_parser_context.h xml_sax_parser.h xml_sax_push_parser.h \
|
200
|
+
xml_reader.h xslt_stylesheet.h xml_syntax_error.h xml_schema.h \
|
201
|
+
xml_relax_ng.h html_element_description.h xml_namespace.h \
|
202
|
+
xml_encoding_handler.h
|
203
|
+
|
204
|
+
nokogiri.o: nokogiri.c nokogiri.h xml_io.h xml_document.h \
|
205
|
+
html_entity_lookup.h html_document.h xml_node.h xml_text.h \
|
206
|
+
xml_cdata.h xml_attr.h xml_processing_instruction.h \
|
207
|
+
xml_entity_reference.h xml_document_fragment.h xml_comment.h \
|
208
|
+
xml_node_set.h xml_dtd.h xml_attribute_decl.h xml_element_decl.h \
|
209
|
+
xml_entity_decl.h xml_xpath_context.h xml_element_content.h \
|
210
|
+
xml_sax_parser_context.h xml_sax_parser.h xml_sax_push_parser.h \
|
211
|
+
xml_reader.h html_sax_parser_context.h xslt_stylesheet.h \
|
212
|
+
xml_syntax_error.h xml_schema.h xml_relax_ng.h \
|
213
|
+
html_element_description.h xml_namespace.h xml_encoding_handler.h
|
214
|
+
|
215
|
+
xml_attr.o: xml_attr.c xml_attr.h nokogiri.h xml_io.h xml_document.h \
|
216
|
+
html_entity_lookup.h html_document.h xml_node.h xml_text.h \
|
217
|
+
xml_cdata.h xml_processing_instruction.h xml_entity_reference.h \
|
218
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nokogiri.h xml_io.h xml_document.h html_entity_lookup.h \
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xml_document.h html_entity_lookup.h html_document.h xml_node.h \
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xml_reader.o: xml_reader.c xml_reader.h nokogiri.h xml_io.h \
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xml_document.h html_entity_lookup.h html_document.h xml_node.h \
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+
xml_document_fragment.h xml_comment.h xml_node_set.h xml_dtd.h \
|
454
|
+
xml_attribute_decl.h xml_element_decl.h xml_entity_decl.h \
|
455
|
+
xml_xpath_context.h xml_element_content.h xml_sax_parser_context.h \
|
456
|
+
xml_sax_parser.h xml_reader.h html_sax_parser_context.h \
|
457
|
+
xslt_stylesheet.h xml_syntax_error.h xml_schema.h xml_relax_ng.h \
|
458
|
+
html_element_description.h xml_namespace.h xml_encoding_handler.h
|
459
|
+
|
460
|
+
xml_schema.o: xml_schema.c xml_schema.h nokogiri.h xml_io.h \
|
461
|
+
xml_document.h html_entity_lookup.h html_document.h xml_node.h \
|
462
|
+
xml_text.h xml_cdata.h xml_attr.h xml_processing_instruction.h \
|
463
|
+
xml_entity_reference.h xml_document_fragment.h xml_comment.h \
|
464
|
+
xml_node_set.h xml_dtd.h xml_attribute_decl.h xml_element_decl.h \
|
465
|
+
xml_entity_decl.h xml_xpath_context.h xml_element_content.h \
|
466
|
+
xml_sax_parser_context.h xml_sax_parser.h xml_sax_push_parser.h \
|
467
|
+
xml_reader.h html_sax_parser_context.h xslt_stylesheet.h \
|
468
|
+
xml_syntax_error.h xml_relax_ng.h html_element_description.h \
|
469
|
+
xml_namespace.h xml_encoding_handler.h
|
470
|
+
|
471
|
+
xml_syntax_error.o: xml_syntax_error.c xml_syntax_error.h nokogiri.h \
|
472
|
+
xml_io.h xml_document.h html_entity_lookup.h html_document.h \
|
473
|
+
xml_node.h xml_text.h xml_cdata.h xml_attr.h \
|
474
|
+
xml_processing_instruction.h xml_entity_reference.h \
|
475
|
+
xml_document_fragment.h xml_comment.h xml_node_set.h xml_dtd.h \
|
476
|
+
xml_attribute_decl.h xml_element_decl.h xml_entity_decl.h \
|
477
|
+
xml_xpath_context.h xml_element_content.h xml_sax_parser_context.h \
|
478
|
+
xml_sax_parser.h xml_sax_push_parser.h xml_reader.h \
|
479
|
+
html_sax_parser_context.h xslt_stylesheet.h xml_schema.h \
|
480
|
+
xml_relax_ng.h html_element_description.h xml_namespace.h \
|
481
|
+
xml_encoding_handler.h
|
482
|
+
|
483
|
+
xml_text.o: xml_text.c xml_text.h nokogiri.h xml_io.h xml_document.h \
|
484
|
+
html_entity_lookup.h html_document.h xml_node.h xml_cdata.h \
|
485
|
+
xml_attr.h xml_processing_instruction.h xml_entity_reference.h \
|
486
|
+
xml_document_fragment.h xml_comment.h xml_node_set.h xml_dtd.h \
|
487
|
+
xml_attribute_decl.h xml_element_decl.h xml_entity_decl.h \
|
488
|
+
xml_xpath_context.h xml_element_content.h xml_sax_parser_context.h \
|
489
|
+
xml_sax_parser.h xml_sax_push_parser.h xml_reader.h \
|
490
|
+
html_sax_parser_context.h xslt_stylesheet.h xml_syntax_error.h \
|
491
|
+
xml_schema.h xml_relax_ng.h html_element_description.h \
|
492
|
+
xml_namespace.h xml_encoding_handler.h
|
493
|
+
|
494
|
+
xml_xpath_context.o: xml_xpath_context.c xml_xpath_context.h \
|
495
|
+
nokogiri.h xml_io.h xml_document.h html_entity_lookup.h \
|
496
|
+
html_document.h xml_node.h xml_text.h xml_cdata.h xml_attr.h \
|
497
|
+
xml_processing_instruction.h xml_entity_reference.h \
|
498
|
+
xml_document_fragment.h xml_comment.h xml_node_set.h xml_dtd.h \
|
499
|
+
xml_attribute_decl.h xml_element_decl.h xml_entity_decl.h \
|
500
|
+
xml_element_content.h xml_sax_parser_context.h xml_sax_parser.h \
|
501
|
+
xml_sax_push_parser.h xml_reader.h html_sax_parser_context.h \
|
502
|
+
xslt_stylesheet.h xml_syntax_error.h xml_schema.h xml_relax_ng.h \
|
503
|
+
html_element_description.h xml_namespace.h xml_encoding_handler.h
|
504
|
+
|
505
|
+
xslt_stylesheet.o: xslt_stylesheet.c xslt_stylesheet.h nokogiri.h \
|
506
|
+
xml_io.h xml_document.h html_entity_lookup.h html_document.h \
|
507
|
+
xml_node.h xml_text.h xml_cdata.h xml_attr.h \
|
508
|
+
xml_processing_instruction.h xml_entity_reference.h \
|
509
|
+
xml_document_fragment.h xml_comment.h xml_node_set.h xml_dtd.h \
|
510
|
+
xml_attribute_decl.h xml_element_decl.h xml_entity_decl.h \
|
511
|
+
xml_xpath_context.h xml_element_content.h xml_sax_parser_context.h \
|
512
|
+
xml_sax_parser.h xml_sax_push_parser.h xml_reader.h \
|
513
|
+
html_sax_parser_context.h xml_syntax_error.h xml_schema.h \
|
514
|
+
xml_relax_ng.h html_element_description.h xml_namespace.h \
|
515
|
+
xml_encoding_handler.h
|