search_biomodel 0.1.2 → 1.0.0

data/Gemfile

@@ -6,8 +6,7 @@ source "http://rubygems.org"
 # Add dependencies to develop your gem here.
 # Include everything needed to run rake, tests, features, etc.
 group :development do
-  gem "shoulda", ">= 0"
-  gem "bundler", "~> 1.0.0"
   gem "jeweler", "~> 1.6.2"
   gem "rcov", ">= 0"
+  gem "savon", "~> 0.9.2"
 end

data/Gemfile.lock

@@ -1,20 +1,34 @@
 GEM
   remote: http://rubygems.org/
   specs:
+    builder (3.0.0)
     git (1.2.5)
+    gyoku (0.4.4)
+      builder (>= 2.1.2)
+    httpi (0.9.4)
+      pyu-ntlm-http (>= 0.1.3.1)
+      rack
     jeweler (1.6.2)
       bundler (~> 1.0)
       git (>= 1.2.5)
       rake
+    nokogiri (1.4.6)
+    nori (1.0.1)
+    pyu-ntlm-http (0.1.3.1)
+    rack (1.3.0)
     rake (0.9.2)
     rcov (0.9.9)
-    shoulda (2.11.3)
+    savon (0.9.2)
+      builder (>= 2.1.2)
+      gyoku (>= 0.4.0)
+      httpi (>= 0.7.8)
+      nokogiri (>= 1.4.0)
+      nori (>= 0.2.0)
 
 PLATFORMS
   ruby
 
 DEPENDENCIES
-  bundler (~> 1.0.0)
   jeweler (~> 1.6.2)
   rcov
-  shoulda
+  savon (~> 0.9.2)

data/README.rdoc

@@ -1,6 +1,14 @@
 = search_biomodel
 
-Description goes here.
+search biomodel is a small gem ready to be used for running queries through the biomodel web service API. 
+
+There are (currently) 3 methods to communicate with the biomodels website (found at http://www.ebi.ac.uk/biomodels-main/). 
+
+These methods are "search_by_chebiid", "search_by_name" and "get_all_models". The former two return an array and the latter a hash map of :key and :value
+
+== Installation 
+
+  gem install seach_biomodel
 
 == Contributing to search_biomodel
  
@@ -11,7 +19,6 @@ Description goes here.
 * Commit and push until you are happy with your contribution
 * Make sure to add tests for it. This is important so I don't break it in a future version unintentionally.
 * Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it.
-
 == Copyright
 
 Copyright (c) 2011 Niall Beard. See LICENSE.txt for

data/VERSION

@@ -1 +1 @@
-0.1.2
+1.0.0

data/lib/search_biomodel.rb

@@ -1,33 +1,36 @@
 require 'rubygems'
 require 'savon'
 
+
 module SysMODB
 
   class SearchBiomodelException < Exception
-    puts "Awww maaaan. Didn't work"
   end
 
   module SearchBiomodel
    
-    def search_by_ChEBIID
+    def search_by_ChEBIID(search_string)
       client = create_connection
       response = client.request(:biom, "get_models_id_by_ch_ebi_id") do
-        soap.body = { :ChEBBId => value, :attributes! => { :ChEBBId => { "xsi:type" => "xsd:string" } } }  
+        soap.body = { :ChEBBId => search_string, :attributes! => { :ChEBBId => { "xsi:type" => "xsd:string" } } }  
       end
       return response.to_hash[:get_models_id_by_ch_ebi_id_response][:get_models_id_by_ch_ebi_id_return][:get_models_id_by_ch_ebi_id_return]
     end
     
+
     def get_all_models
       client = create_connection  
-      response = client.request :biom, "get_all_models" 
-      parse_responses response, "get_all_models"
-      return response.to_hash[:get_all_models_response][:get_all_models_return][:get_all_models_return]
+      response = client.request(:biom, "get_all_models" ) do
+        soap.body = { :modelName => "?", :attributes! => { :modelName => { "xsi:type" => "xsd:string" } } }
+      end
+      return response.to_hash[:multi_ref][:item]
     end
   
-    def get_models_id_by_name
+
+    def search_by_name (search_string)
       client = create_connection
       response = client.request(:biom, "get_models_id_by_name") do
-        soap.body = { :modelName => value, :attributes! => { :modelName => { "xsi:type" => "xsd:string" } } }  
+        soap.body = { :modelName => search_string, :attributes! => { :modelName => { "xsi:type" => "xsd:string" } } }  
       end
       return response.to_hash[:get_models_id_by_name_response][:get_models_id_by_name_return][:get_models_id_by_name_return]
     end

data/search_biomodel.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = %q{search_biomodel}
-  s.version = "0.1.2"
+  s.version = "1.0.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Niall Beard"]
-  s.date = %q{2011-06-27}
+  s.date = %q{2011-06-28}
   s.description = %q{Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine }
   s.email = %q{beardn9@cs.man.ac.uk}
   s.extra_rdoc_files = [
@@ -26,7 +26,1056 @@ Gem::Specification.new do |s|
     "VERSION",
     "lib/search_biomodel.rb",
     "search_biomodel.gemspec",
-    "test.rb",
+    "search_biomodel/ruby/1.8/bin/jeweler",
+    "search_biomodel/ruby/1.8/bin/nokogiri",
+    "search_biomodel/ruby/1.8/bin/rackup",
+    "search_biomodel/ruby/1.8/bin/rake",
+    "search_biomodel/ruby/1.8/bin/rcov",
+    "search_biomodel/ruby/1.8/cache/builder-3.0.0.gem",
+    "search_biomodel/ruby/1.8/cache/git-1.2.5.gem",
+    "search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem",
+    "search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem",
+    "search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem",
+    "search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem",
+    "search_biomodel/ruby/1.8/cache/nori-1.0.1.gem",
+    "search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem",
+    "search_biomodel/ruby/1.8/cache/rack-1.3.0.gem",
+    "search_biomodel/ruby/1.8/cache/rake-0.9.2.gem",
+    "search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem",
+    "search_biomodel/ruby/1.8/cache/savon-0.9.2.gem",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/README",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb",
+    "search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/README",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb",
+    "search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb",
+    "search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb",
+    "search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb",
+    "search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb",
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+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/hash.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/time.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/request.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/xml.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/version.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/document.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/request.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsse.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/savon.gemspec",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/gzip/message.gz",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/another_soap_fault.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/authentication.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/header.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/list.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/multi_ref.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault12.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/authentication.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/geotrust.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/namespaced_actions.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/no_namespace.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/soap12.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/two_bindings.xml",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/client_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/hash_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/object_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/string_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/time_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/http/error_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/savon_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/fault_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/request_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/response_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/xml_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/document_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/parser_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/request_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsse_spec.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/spec_helper.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/endpoint.rb",
+    "search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/fixture.rb",
+    "search_biomodel/ruby/1.8/specifications/builder-3.0.0.gemspec",
+    "search_biomodel/ruby/1.8/specifications/git-1.2.5.gemspec",
+    "search_biomodel/ruby/1.8/specifications/gyoku-0.4.4.gemspec",
+    "search_biomodel/ruby/1.8/specifications/httpi-0.9.4.gemspec",
+    "search_biomodel/ruby/1.8/specifications/jeweler-1.6.2.gemspec",
+    "search_biomodel/ruby/1.8/specifications/nokogiri-1.4.6.gemspec",
+    "search_biomodel/ruby/1.8/specifications/nori-1.0.1.gemspec",
+    "search_biomodel/ruby/1.8/specifications/pyu-ntlm-http-0.1.3.1.gemspec",
+    "search_biomodel/ruby/1.8/specifications/rack-1.3.0.gemspec",
+    "search_biomodel/ruby/1.8/specifications/rake-0.9.2.gemspec",
+    "search_biomodel/ruby/1.8/specifications/rcov-0.9.9.gemspec",
+    "search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec",
     "test/helper.rb",
     "test/test_search_biomodel.rb"
   ]
@@ -41,21 +1090,18 @@ Gem::Specification.new do |s|
     s.specification_version = 3
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
-      s.add_development_dependency(%q<shoulda>, [">= 0"])
-      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
       s.add_development_dependency(%q<jeweler>, ["~> 1.6.2"])
       s.add_development_dependency(%q<rcov>, [">= 0"])
+      s.add_development_dependency(%q<savon>, ["~> 0.9.2"])
     else
-      s.add_dependency(%q<shoulda>, [">= 0"])
-      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
       s.add_dependency(%q<jeweler>, ["~> 1.6.2"])
       s.add_dependency(%q<rcov>, [">= 0"])
+      s.add_dependency(%q<savon>, ["~> 0.9.2"])
     end
   else
-    s.add_dependency(%q<shoulda>, [">= 0"])
-    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
     s.add_dependency(%q<jeweler>, ["~> 1.6.2"])
     s.add_dependency(%q<rcov>, [">= 0"])
+    s.add_dependency(%q<savon>, ["~> 0.9.2"])
   end
 end