search_biomodel 0.1.2 → 1.0.0

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Files changed (1059) hide show
  1. data/Gemfile +1 -2
  2. data/Gemfile.lock +17 -3
  3. data/README.rdoc +9 -2
  4. data/VERSION +1 -1
  5. data/lib/search_biomodel.rb +11 -8
  6. data/search_biomodel.gemspec +1055 -9
  7. data/search_biomodel/ruby/1.8/bin/jeweler +19 -0
  8. data/search_biomodel/ruby/1.8/bin/nokogiri +19 -0
  9. data/search_biomodel/ruby/1.8/bin/rackup +19 -0
  10. data/search_biomodel/ruby/1.8/bin/rake +19 -0
  11. data/search_biomodel/ruby/1.8/bin/rcov +19 -0
  12. data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
  13. data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
  14. data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
  15. data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
  16. data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
  17. data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
  18. data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
  19. data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
  20. data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
  21. data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
  22. data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
  23. data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
  24. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +89 -0
  25. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +229 -0
  26. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +232 -0
  27. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +296 -0
  28. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +55364 -0
  29. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +109 -0
  30. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +13 -0
  31. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +23 -0
  32. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +197 -0
  33. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +160 -0
  34. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +63 -0
  35. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +334 -0
  36. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +40 -0
  37. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +39 -0
  38. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +225 -0
  39. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +125 -0
  40. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +150 -0
  41. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +546 -0
  42. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +39 -0
  43. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +77 -0
  44. data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +240 -0
  45. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +156 -0
  46. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +14 -0
  47. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +479 -0
  48. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +104 -0
  49. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +48 -0
  50. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +146 -0
  51. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +5 -0
  52. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +719 -0
  53. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +117 -0
  54. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +273 -0
  55. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +27 -0
  56. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +40 -0
  57. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +4 -0
  58. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +27 -0
  59. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +44 -0
  60. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +110 -0
  61. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +4 -0
  62. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
  63. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +9 -0
  64. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +1 -0
  65. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +7 -0
  66. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +55 -0
  67. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +2 -0
  68. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +20 -0
  69. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +81 -0
  70. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +11 -0
  71. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +26 -0
  72. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +23 -0
  73. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +45 -0
  74. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +19 -0
  75. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +55 -0
  76. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +5 -0
  77. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +63 -0
  78. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +28 -0
  79. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +53 -0
  80. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +17 -0
  81. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +160 -0
  82. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +77 -0
  83. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +49 -0
  84. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +46 -0
  85. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +2 -0
  86. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +5 -0
  87. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
  88. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +9 -0
  89. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +1 -0
  90. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +7 -0
  91. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +60 -0
  92. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +8 -0
  93. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +20 -0
  94. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +223 -0
  95. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +18 -0
  96. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +1 -0
  97. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +28 -0
  98. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +198 -0
  99. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +67 -0
  100. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +125 -0
  101. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +98 -0
  102. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +117 -0
  103. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +81 -0
  104. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +91 -0
  105. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +56 -0
  106. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +90 -0
  107. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +85 -0
  108. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +5 -0
  109. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
  110. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +16 -0
  111. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +15 -0
  112. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
  113. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +10 -0
  114. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
  115. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +1 -0
  116. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +232 -0
  117. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +164 -0
  118. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +142 -0
  119. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +55 -0
  120. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +117 -0
  121. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +128 -0
  122. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +284 -0
  123. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +135 -0
  124. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +125 -0
  125. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +95 -0
  126. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +39 -0
  127. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +12 -0
  128. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +27 -0
  129. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +19 -0
  130. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +8 -0
  131. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +166 -0
  132. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +22 -0
  133. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +59 -0
  134. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +20 -0
  135. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +216 -0
  136. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +81 -0
  137. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +5 -0
  138. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +103 -0
  139. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +86 -0
  140. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +13 -0
  141. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +9 -0
  142. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +71 -0
  143. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +102 -0
  144. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +20 -0
  145. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +158 -0
  146. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +12 -0
  147. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +54 -0
  148. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +149 -0
  149. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +5 -0
  150. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +6 -0
  151. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +70 -0
  152. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +382 -0
  153. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +6 -0
  154. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +42 -0
  155. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +9 -0
  156. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +31 -0
  157. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +49 -0
  158. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +244 -0
  159. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler.rb +177 -0
  160. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +20 -0
  161. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +36 -0
  162. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +50 -0
  163. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +31 -0
  164. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +82 -0
  165. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +59 -0
  166. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +28 -0
  167. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +30 -0
  168. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +55 -0
  169. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +13 -0
  170. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +12 -0
  171. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +14 -0
  172. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +12 -0
  173. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +39 -0
  174. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +8 -0
  175. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +8 -0
  176. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +87 -0
  177. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +287 -0
  178. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +61 -0
  179. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +43 -0
  180. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +29 -0
  181. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +41 -0
  182. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +42 -0
  183. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +162 -0
  184. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +9 -0
  185. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +42 -0
  186. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +42 -0
  187. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +44 -0
  188. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +42 -0
  189. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +42 -0
  190. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +39 -0
  191. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +14 -0
  192. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +95 -0
  193. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +38 -0
  194. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +38 -0
  195. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +110 -0
  196. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +224 -0
  197. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +5 -0
  198. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +48 -0
  199. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +12 -0
  200. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +20 -0
  201. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +19 -0
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  911. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_manager_argument_resolution.rb +36 -0
  912. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_with_arguments.rb +162 -0
  913. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_test_task.rb +122 -0
  914. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_top_level_functions.rb +76 -0
  915. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_win32.rb +83 -0
  916. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_sys.rb +20 -0
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  918. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/LICENSE +53 -0
  919. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/Rakefile +103 -0
  920. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/THANKS +110 -0
  921. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/bin/rcov +522 -0
  922. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/editor-extensions/rcov.el +131 -0
  923. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/editor-extensions/rcov.vim +38 -0
  924. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.8/callsite.c +216 -0
  925. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.8/rcovrt.c +294 -0
  926. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/callsite.c +234 -0
  927. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/rcovrt.c +264 -0
  928. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/Makefile +157 -0
  929. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/callsite.o +0 -0
  930. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/extconf.rb +21 -0
  931. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/rcovrt.o +0 -0
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  935. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/code_coverage_analyzer.rb +271 -0
  936. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/coverage_info.rb +36 -0
  937. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/differential_analyzer.rb +116 -0
  938. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/file_statistics.rb +355 -0
  939. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters.rb +13 -0
  940. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/base_formatter.rb +174 -0
  941. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/failure_report.rb +15 -0
  942. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/full_text_report.rb +48 -0
  943. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_coverage.rb +274 -0
  944. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_erb_template.rb +62 -0
  945. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_coverage_diff.rb +193 -0
  946. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_report.rb +32 -0
  947. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_summary.rb +11 -0
  948. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/lowlevel.rb +146 -0
  949. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/rcovtask.rb +156 -0
  950. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/detail.html.erb +64 -0
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  952. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery-1.3.2.min.js +19 -0
  953. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery.tablesorter.min.js +15 -0
  954. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/print.css +12 -0
  955. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/rcov.js +42 -0
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  979. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/file_statistics_test.rb +471 -0
  980. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/functional_test.rb +91 -0
  981. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/test_helper.rb +4 -0
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  984. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec +1 -0
  985. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml +7 -0
  986. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts +2 -0
  987. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md +533 -0
  988. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile +4 -0
  989. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE +20 -0
  990. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md +39 -0
  991. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile +40 -0
  992. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon.rb +14 -0
  993. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb +161 -0
  994. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/hash.rb +70 -0
  995. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb +14 -0
  996. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb +51 -0
  997. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/time.rb +22 -0
  998. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb +6 -0
  999. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb +83 -0
  1000. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb +42 -0
  1001. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap.rb +24 -0
  1002. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb +59 -0
  1003. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/request.rb +61 -0
  1004. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb +85 -0
  1005. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/xml.rb +184 -0
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  1007. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/document.rb +112 -0
  1008. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb +96 -0
  1009. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/request.rb +35 -0
  1010. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsse.rb +156 -0
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  1012. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/gzip/message.gz +0 -0
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  1014. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/authentication.xml +14 -0
  1015. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/header.xml +13 -0
  1016. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/list.xml +18 -0
  1017. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/multi_ref.xml +39 -0
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  1019. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault12.xml +18 -0
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  1027. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/hash_spec.rb +121 -0
  1028. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/object_spec.rb +19 -0
  1029. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/string_spec.rb +57 -0
  1030. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/time_spec.rb +13 -0
  1031. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/http/error_spec.rb +52 -0
  1032. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/savon_spec.rb +85 -0
  1033. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/fault_spec.rb +89 -0
  1034. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/request_spec.rb +45 -0
  1035. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/response_spec.rb +181 -0
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  1056. data/search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec +55 -0
  1057. data/test/test_search_biomodel.rb +29 -4
  1058. metadata +1071 -36
  1059. data/test.rb +0 -1
@@ -0,0 +1,20 @@
1
+ = Rake Project -- To Do List
2
+
3
+ Send suggestions for this list to mailto:jim@weirichhouse.org or on
4
+ the rake-devel@rubyforge.org mailing list.
5
+
6
+ === To Do
7
+ * Need a nice API for accessing tasks in namespaces, namespaces in an app, etc.
8
+ * Provide a way to disable -w warning mode.
9
+ * Define a set of default rules that work in the absence of any Rakefile
10
+ * What about cyclic dependencies?
11
+ * Java support utilities
12
+ * Installation support utilities
13
+ * Check out installpkg.rb
14
+ * Autogenerate Dependencies
15
+ * Rules should apply to existing tasks if no actions are defined.
16
+ * How to create multiple package tasks without task name collision?
17
+ * Trap "ln -s" commands that fail and use "cp" instead (SMB mounted
18
+ drives have problems with "ln -s".
19
+
20
+ (moved DONE list to CHANGES file)
@@ -0,0 +1,32 @@
1
+ #!/usr/bin/env ruby
2
+
3
+ #--
4
+ # Copyright (c) 2003, 2004, 2005, 2006, 2007 Jim Weirich
5
+ #
6
+ # Permission is hereby granted, free of charge, to any person obtaining a copy
7
+ # of this software and associated documentation files (the "Software"), to
8
+ # deal in the Software without restriction, including without limitation the
9
+ # rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
10
+ # sell copies of the Software, and to permit persons to whom the Software is
11
+ # furnished to do so, subject to the following conditions:
12
+ #
13
+ # The above copyright notice and this permission notice shall be included in
14
+ # all copies or substantial portions of the Software.
15
+ #
16
+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17
+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18
+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
21
+ # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
22
+ # IN THE SOFTWARE.
23
+ #++
24
+
25
+ begin
26
+ require 'rubygems'
27
+ rescue LoadError
28
+ end
29
+
30
+ require 'rake'
31
+
32
+ Rake.application.run
@@ -0,0 +1,90 @@
1
+ require 'rbconfig'
2
+ require 'find'
3
+ require 'fileutils'
4
+
5
+ include RbConfig
6
+
7
+ $ruby = CONFIG['ruby_install_name']
8
+
9
+ ##
10
+ # Install a binary file. We patch in on the way through to
11
+ # insert a #! line. If this is a Unix install, we name
12
+ # the command (for example) 'rake' and let the shebang line
13
+ # handle running it. Under windows, we add a '.rb' extension
14
+ # and let file associations to their stuff
15
+ #
16
+
17
+ def installBIN(from, opfile)
18
+
19
+ tmp_dir = nil
20
+ for t in [".", "/tmp", "c:/temp", $bindir]
21
+ stat = File.stat(t) rescue next
22
+ if stat.directory? and stat.writable?
23
+ tmp_dir = t
24
+ break
25
+ end
26
+ end
27
+
28
+ fail "Cannot find a temporary directory" unless tmp_dir
29
+ tmp_file = File.join(tmp_dir, "_tmp")
30
+
31
+ File.open(from) do |ip|
32
+ File.open(tmp_file, "w") do |op|
33
+ ruby = File.join($realbindir, $ruby)
34
+ op.puts "#!#{ruby} -w"
35
+ op.write ip.read
36
+ end
37
+ end
38
+
39
+ opfile += ".rb" if CONFIG["target_os"] =~ /mswin/i
40
+ FileUtils.install(tmp_file, File.join($bindir, opfile),
41
+ {:mode => 0755, :verbose => true})
42
+ File.unlink(tmp_file)
43
+ end
44
+
45
+ $sitedir = CONFIG["sitelibdir"]
46
+ unless $sitedir
47
+ version = CONFIG["MAJOR"]+"."+CONFIG["MINOR"]
48
+ $libdir = File.join(CONFIG["libdir"], "ruby", version)
49
+ $sitedir = $:.find {|x| x =~ /site_ruby/}
50
+ if !$sitedir
51
+ $sitedir = File.join($libdir, "site_ruby")
52
+ elsif $sitedir !~ Regexp.quote(version)
53
+ $sitedir = File.join($sitedir, version)
54
+ end
55
+ end
56
+
57
+ $bindir = CONFIG["bindir"]
58
+
59
+ $realbindir = $bindir
60
+
61
+ bindir = CONFIG["bindir"]
62
+ if (destdir = ENV['DESTDIR'])
63
+ $bindir = destdir + $bindir
64
+ $sitedir = destdir + $sitedir
65
+
66
+ FileUtils.mkdir_p($bindir)
67
+ FileUtils.mkdir_p($sitedir)
68
+ end
69
+
70
+ rake_dest = File.join($sitedir, "rake")
71
+ FileUtils.mkdir_p(rake_dest, {:verbose => true})
72
+ File.chmod(0755, rake_dest)
73
+
74
+ # The library files
75
+
76
+ files = Dir.chdir('lib') { Dir['**/*.rb'] }
77
+
78
+ for fn in files
79
+ fn_dir = File.dirname(fn)
80
+ target_dir = File.join($sitedir, fn_dir)
81
+ if ! File.exist?(target_dir)
82
+ FileUtils.mkdir_p(target_dir)
83
+ end
84
+ FileUtils.install(File.join('lib', fn), File.join($sitedir, fn),
85
+ {:mode => 0644, :verbose => true})
86
+ end
87
+
88
+ # and the executable
89
+
90
+ installBIN("bin/rake", "rake")
@@ -0,0 +1,65 @@
1
+ #--
2
+
3
+ # Copyright 2003-2010 by Jim Weirich (jim.weirich@gmail.com)
4
+ #
5
+ # Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ # of this software and associated documentation files (the "Software"), to
7
+ # deal in the Software without restriction, including without limitation the
8
+ # rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
9
+ # sell copies of the Software, and to permit persons to whom the Software is
10
+ # furnished to do so, subject to the following conditions:
11
+ #
12
+ # The above copyright notice and this permission notice shall be included in
13
+ # all copies or substantial portions of the Software.
14
+ #
15
+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
20
+ # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
21
+ # IN THE SOFTWARE.
22
+ #++
23
+
24
+ require 'rake/version'
25
+
26
+ RAKEVERSION = Rake::VERSION
27
+
28
+ require 'rbconfig'
29
+ require 'fileutils'
30
+ require 'singleton'
31
+ require 'monitor'
32
+ require 'optparse'
33
+ require 'ostruct'
34
+
35
+ require 'rake/ext/module'
36
+ require 'rake/ext/string'
37
+ require 'rake/ext/time'
38
+
39
+ require 'rake/win32'
40
+
41
+ require 'rake/task_argument_error'
42
+ require 'rake/rule_recursion_overflow_error'
43
+ require 'rake/rake_module'
44
+ require 'rake/pseudo_status'
45
+ require 'rake/task_arguments'
46
+ require 'rake/invocation_chain'
47
+ require 'rake/task'
48
+ require 'rake/file_task'
49
+ require 'rake/file_creation_task'
50
+ require 'rake/multi_task'
51
+ require 'rake/dsl_definition'
52
+ require 'rake/file_utils_ext'
53
+ require 'rake/file_list'
54
+ require 'rake/default_loader'
55
+ require 'rake/early_time'
56
+ require 'rake/name_space'
57
+ require 'rake/task_manager'
58
+ require 'rake/application'
59
+
60
+ $trace = false
61
+
62
+ # Some top level Constants.
63
+
64
+ FileList = Rake::FileList
65
+ RakeFileUtils = Rake::FileUtilsExt
@@ -0,0 +1,109 @@
1
+ #
2
+ # Copyright (c) 2008 James M. Lawrence
3
+ #
4
+ # Permission is hereby granted, free of charge, to any person
5
+ # obtaining a copy of this software and associated documentation files
6
+ # (the "Software"), to deal in the Software without restriction,
7
+ # including without limitation the rights to use, copy, modify, merge,
8
+ # publish, distribute, sublicense, and/or sell copies of the Software,
9
+ # and to permit persons to whom the Software is furnished to do so,
10
+ # subject to the following conditions:
11
+ #
12
+ # The above copyright notice and this permission notice shall be
13
+ # included in all copies or substantial portions of the Software.
14
+ #
15
+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
16
+ # EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
17
+ # MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
18
+ # NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
19
+ # BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
20
+ # ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
21
+ # CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
22
+ # SOFTWARE.
23
+ #
24
+
25
+ require 'rbconfig'
26
+
27
+ #
28
+ # Alternate implementations of system() and backticks `` on Windows
29
+ # for ruby-1.8 and earlier.
30
+ #
31
+ module Rake::AltSystem
32
+ WINDOWS = RbConfig::CONFIG["host_os"] =~
33
+ %r!(msdos|mswin|djgpp|mingw|[Ww]indows)!
34
+
35
+ class << self
36
+ def define_module_function(name, &block)
37
+ define_method(name, &block)
38
+ module_function(name)
39
+ end
40
+ end
41
+
42
+ if WINDOWS and RUBY_VERSION < "1.9.0"
43
+ RUNNABLE_EXTS = %w[com exe bat cmd]
44
+ RUNNABLE_PATTERN = %r!\.(#{RUNNABLE_EXTS.join('|')})\Z!i
45
+
46
+ define_module_function :kernel_system, &Kernel.method(:system)
47
+ define_module_function :kernel_backticks, &Kernel.method(:'`')
48
+
49
+ module_function
50
+
51
+ def repair_command(cmd)
52
+ "call " + (
53
+ if cmd =~ %r!\A\s*\".*?\"!
54
+ # already quoted
55
+ cmd
56
+ elsif match = cmd.match(%r!\A\s*(\S+)!)
57
+ if match[1] =~ %r!/!
58
+ # avoid x/y.bat interpretation as x with option /y
59
+ %Q!"#{match[1]}"! + match.post_match
60
+ else
61
+ # a shell command will fail if quoted
62
+ cmd
63
+ end
64
+ else
65
+ # empty or whitespace
66
+ cmd
67
+ end
68
+ )
69
+ end
70
+
71
+ def find_runnable(file)
72
+ if file =~ RUNNABLE_PATTERN
73
+ file
74
+ else
75
+ RUNNABLE_EXTS.each { |ext|
76
+ if File.exist?(test = "#{file}.#{ext}")
77
+ return test
78
+ end
79
+ }
80
+ nil
81
+ end
82
+ end
83
+
84
+ def system(cmd, *args)
85
+ repaired = (
86
+ if args.empty?
87
+ [repair_command(cmd)]
88
+ elsif runnable = find_runnable(cmd)
89
+ [File.expand_path(runnable), *args]
90
+ else
91
+ # non-existent file
92
+ [cmd, *args]
93
+ end
94
+ )
95
+ kernel_system(*repaired)
96
+ end
97
+
98
+ def backticks(cmd)
99
+ kernel_backticks(repair_command(cmd))
100
+ end
101
+
102
+ define_module_function :'`', &method(:backticks)
103
+ else
104
+ # Non-Windows or ruby-1.9+: same as Kernel versions
105
+ define_module_function :system, &Kernel.method(:system)
106
+ define_module_function :backticks, &Kernel.method(:'`')
107
+ define_module_function :'`', &Kernel.method(:'`')
108
+ end
109
+ end
@@ -0,0 +1,589 @@
1
+ require 'shellwords'
2
+ require 'optparse'
3
+
4
+ require 'rake/task_manager'
5
+ require 'rake/win32'
6
+
7
+ module Rake
8
+
9
+ ######################################################################
10
+ # Rake main application object. When invoking +rake+ from the
11
+ # command line, a Rake::Application object is created and run.
12
+ #
13
+ class Application
14
+ include TaskManager
15
+
16
+ # The name of the application (typically 'rake')
17
+ attr_reader :name
18
+
19
+ # The original directory where rake was invoked.
20
+ attr_reader :original_dir
21
+
22
+ # Name of the actual rakefile used.
23
+ attr_reader :rakefile
24
+
25
+ # List of the top level task names (task names from the command line).
26
+ attr_reader :top_level_tasks
27
+
28
+ DEFAULT_RAKEFILES = ['rakefile', 'Rakefile', 'rakefile.rb', 'Rakefile.rb'].freeze
29
+
30
+ # Initialize a Rake::Application object.
31
+ def initialize
32
+ super
33
+ @name = 'rake'
34
+ @rakefiles = DEFAULT_RAKEFILES.dup
35
+ @rakefile = nil
36
+ @pending_imports = []
37
+ @imported = []
38
+ @loaders = {}
39
+ @default_loader = Rake::DefaultLoader.new
40
+ @original_dir = Dir.pwd
41
+ @top_level_tasks = []
42
+ add_loader('rb', DefaultLoader.new)
43
+ add_loader('rf', DefaultLoader.new)
44
+ add_loader('rake', DefaultLoader.new)
45
+ @tty_output = STDOUT.tty?
46
+ end
47
+
48
+ # Run the Rake application. The run method performs the following
49
+ # three steps:
50
+ #
51
+ # * Initialize the command line options (+init+).
52
+ # * Define the tasks (+load_rakefile+).
53
+ # * Run the top level tasks (+run_tasks+).
54
+ #
55
+ # If you wish to build a custom rake command, you should call
56
+ # +init+ on your application. Then define any tasks. Finally,
57
+ # call +top_level+ to run your top level tasks.
58
+ def run
59
+ standard_exception_handling do
60
+ init
61
+ load_rakefile
62
+ top_level
63
+ end
64
+ end
65
+
66
+ # Initialize the command line parameters and app name.
67
+ def init(app_name='rake')
68
+ standard_exception_handling do
69
+ @name = app_name
70
+ handle_options
71
+ collect_tasks
72
+ end
73
+ end
74
+
75
+ # Find the rakefile and then load it and any pending imports.
76
+ def load_rakefile
77
+ standard_exception_handling do
78
+ raw_load_rakefile
79
+ end
80
+ end
81
+
82
+ # Run the top level tasks of a Rake application.
83
+ def top_level
84
+ standard_exception_handling do
85
+ if options.show_tasks
86
+ display_tasks_and_comments
87
+ elsif options.show_prereqs
88
+ display_prerequisites
89
+ else
90
+ top_level_tasks.each { |task_name| invoke_task(task_name) }
91
+ end
92
+ end
93
+ end
94
+
95
+ # Add a loader to handle imported files ending in the extension
96
+ # +ext+.
97
+ def add_loader(ext, loader)
98
+ ext = ".#{ext}" unless ext =~ /^\./
99
+ @loaders[ext] = loader
100
+ end
101
+
102
+ # Application options from the command line
103
+ def options
104
+ @options ||= OpenStruct.new
105
+ end
106
+
107
+ # private ----------------------------------------------------------------
108
+
109
+ def invoke_task(task_string)
110
+ name, args = parse_task_string(task_string)
111
+ t = self[name]
112
+ t.invoke(*args)
113
+ end
114
+
115
+ def parse_task_string(string)
116
+ if string =~ /^([^\[]+)(\[(.*)\])$/
117
+ name = $1
118
+ args = $3.split(/\s*,\s*/)
119
+ else
120
+ name = string
121
+ args = []
122
+ end
123
+ [name, args]
124
+ end
125
+
126
+ # Provide standard exception handling for the given block.
127
+ def standard_exception_handling
128
+ begin
129
+ yield
130
+ rescue SystemExit => ex
131
+ # Exit silently with current status
132
+ raise
133
+ rescue OptionParser::InvalidOption => ex
134
+ $stderr.puts ex.message
135
+ exit(false)
136
+ rescue Exception => ex
137
+ # Exit with error message
138
+ display_error_message(ex)
139
+ exit(false)
140
+ end
141
+ end
142
+
143
+ # Display the error message that caused the exception.
144
+ def display_error_message(ex)
145
+ $stderr.puts "#{name} aborted!"
146
+ $stderr.puts ex.message
147
+ if options.trace
148
+ $stderr.puts ex.backtrace.join("\n")
149
+ else
150
+ $stderr.puts rakefile_location(ex.backtrace)
151
+ end
152
+ $stderr.puts "Tasks: #{ex.chain}" if has_chain?(ex)
153
+ $stderr.puts "(See full trace by running task with --trace)" unless options.trace
154
+ end
155
+
156
+ # Warn about deprecated usage.
157
+ #
158
+ # Example:
159
+ # Rake.application.deprecate("import", "Rake.import", caller.first)
160
+ #
161
+ def deprecate(old_usage, new_usage, call_site)
162
+ return if options.ignore_deprecate
163
+ $stderr.puts "WARNING: '#{old_usage}' is deprecated. " +
164
+ "Please use '#{new_usage}' instead.\n" +
165
+ " at #{call_site}"
166
+ end
167
+
168
+ # Does the exception have a task invocation chain?
169
+ def has_chain?(exception)
170
+ exception.respond_to?(:chain) && exception.chain
171
+ end
172
+ private :has_chain?
173
+
174
+ # True if one of the files in RAKEFILES is in the current directory.
175
+ # If a match is found, it is copied into @rakefile.
176
+ def have_rakefile
177
+ @rakefiles.each do |fn|
178
+ if File.exist?(fn)
179
+ others = Dir.glob(fn, File::FNM_CASEFOLD)
180
+ return others.size == 1 ? others.first : fn
181
+ elsif fn == ''
182
+ return fn
183
+ end
184
+ end
185
+ return nil
186
+ end
187
+
188
+ # True if we are outputting to TTY, false otherwise
189
+ def tty_output?
190
+ @tty_output
191
+ end
192
+
193
+ # Override the detected TTY output state (mostly for testing)
194
+ def tty_output=( tty_output_state )
195
+ @tty_output = tty_output_state
196
+ end
197
+
198
+ # We will truncate output if we are outputting to a TTY or if we've been
199
+ # given an explicit column width to honor
200
+ def truncate_output?
201
+ tty_output? || ENV['RAKE_COLUMNS']
202
+ end
203
+
204
+ # Display the tasks and comments.
205
+ def display_tasks_and_comments
206
+ displayable_tasks = tasks.select { |t|
207
+ t.comment && t.name =~ options.show_task_pattern
208
+ }
209
+ case options.show_tasks
210
+ when :tasks
211
+ width = displayable_tasks.collect { |t| t.name_with_args.length }.max || 10
212
+ max_column = truncate_output? ? terminal_width - name.size - width - 7 : nil
213
+ displayable_tasks.each do |t|
214
+ printf "#{name} %-#{width}s # %s\n",
215
+ t.name_with_args, max_column ? truncate(t.comment, max_column) : t.comment
216
+ end
217
+ when :describe
218
+ displayable_tasks.each do |t|
219
+ puts "#{name} #{t.name_with_args}"
220
+ t.full_comment.split("\n").each do |line|
221
+ puts " #{line}"
222
+ end
223
+ puts
224
+ end
225
+ when :lines
226
+ displayable_tasks.each do |t|
227
+ t.locations.each do |loc|
228
+ printf "#{name} %-30s %s\n",t.name_with_args, loc
229
+ end
230
+ end
231
+ else
232
+ fail "Unknown show task mode: '#{options.show_tasks}'"
233
+ end
234
+ end
235
+
236
+ def terminal_width
237
+ if ENV['RAKE_COLUMNS']
238
+ result = ENV['RAKE_COLUMNS'].to_i
239
+ else
240
+ result = unix? ? dynamic_width : 80
241
+ end
242
+ (result < 10) ? 80 : result
243
+ rescue
244
+ 80
245
+ end
246
+
247
+ # Calculate the dynamic width of the
248
+ def dynamic_width
249
+ @dynamic_width ||= (dynamic_width_stty.nonzero? || dynamic_width_tput)
250
+ end
251
+
252
+ def dynamic_width_stty
253
+ %x{stty size 2>/dev/null}.split[1].to_i
254
+ end
255
+
256
+ def dynamic_width_tput
257
+ %x{tput cols 2>/dev/null}.to_i
258
+ end
259
+
260
+ def unix?
261
+ RbConfig::CONFIG['host_os'] =~ /(aix|darwin|linux|(net|free|open)bsd|cygwin|solaris|irix|hpux)/i
262
+ end
263
+
264
+ def windows?
265
+ Win32.windows?
266
+ end
267
+
268
+ def truncate(string, width)
269
+ if string.length <= width
270
+ string
271
+ else
272
+ ( string[0, width-3] || "" ) + "..."
273
+ end
274
+ end
275
+
276
+ # Display the tasks and prerequisites
277
+ def display_prerequisites
278
+ tasks.each do |t|
279
+ puts "#{name} #{t.name}"
280
+ t.prerequisites.each { |pre| puts " #{pre}" }
281
+ end
282
+ end
283
+
284
+ # A list of all the standard options used in rake, suitable for
285
+ # passing to OptionParser.
286
+ def standard_rake_options
287
+ [
288
+ ['--classic-namespace', '-C', "Put Task and FileTask in the top level namespace",
289
+ lambda { |value|
290
+ require 'rake/classic_namespace'
291
+ options.classic_namespace = true
292
+ }
293
+ ],
294
+ ['--describe', '-D [PATTERN]', "Describe the tasks (matching optional PATTERN), then exit.",
295
+ lambda { |value|
296
+ options.show_tasks = :describe
297
+ options.show_task_pattern = Regexp.new(value || '')
298
+ TaskManager.record_task_metadata = true
299
+ }
300
+ ],
301
+ ['--dry-run', '-n', "Do a dry run without executing actions.",
302
+ lambda { |value|
303
+ Rake.verbose(true)
304
+ Rake.nowrite(true)
305
+ options.dryrun = true
306
+ options.trace = true
307
+ }
308
+ ],
309
+ ['--execute', '-e CODE', "Execute some Ruby code and exit.",
310
+ lambda { |value|
311
+ eval(value)
312
+ exit
313
+ }
314
+ ],
315
+ ['--execute-print', '-p CODE', "Execute some Ruby code, print the result, then exit.",
316
+ lambda { |value|
317
+ puts eval(value)
318
+ exit
319
+ }
320
+ ],
321
+ ['--execute-continue', '-E CODE',
322
+ "Execute some Ruby code, then continue with normal task processing.",
323
+ lambda { |value| eval(value) }
324
+ ],
325
+ ['--libdir', '-I LIBDIR', "Include LIBDIR in the search path for required modules.",
326
+ lambda { |value| $:.push(value) }
327
+ ],
328
+ ['--no-search', '--nosearch', '-N', "Do not search parent directories for the Rakefile.",
329
+ lambda { |value| options.nosearch = true }
330
+ ],
331
+ ['--prereqs', '-P', "Display the tasks and dependencies, then exit.",
332
+ lambda { |value| options.show_prereqs = true }
333
+ ],
334
+ ['--quiet', '-q', "Do not log messages to standard output.",
335
+ lambda { |value| Rake.verbose(false) }
336
+ ],
337
+ ['--rakefile', '-f [FILE]', "Use FILE as the rakefile.",
338
+ lambda { |value|
339
+ value ||= ''
340
+ @rakefiles.clear
341
+ @rakefiles << value
342
+ }
343
+ ],
344
+ ['--rakelibdir', '--rakelib', '-R RAKELIBDIR',
345
+ "Auto-import any .rake files in RAKELIBDIR. (default is 'rakelib')",
346
+ lambda { |value| options.rakelib = value.split(':') }
347
+ ],
348
+ ['--require', '-r MODULE', "Require MODULE before executing rakefile.",
349
+ lambda { |value|
350
+ begin
351
+ require value
352
+ rescue LoadError => ex
353
+ begin
354
+ rake_require value
355
+ rescue LoadError
356
+ raise ex
357
+ end
358
+ end
359
+ }
360
+ ],
361
+ ['--rules', "Trace the rules resolution.",
362
+ lambda { |value| options.trace_rules = true }
363
+ ],
364
+ ['--silent', '-s', "Like --quiet, but also suppresses the 'in directory' announcement.",
365
+ lambda { |value|
366
+ Rake.verbose(false)
367
+ options.silent = true
368
+ }
369
+ ],
370
+ ['--system', '-g',
371
+ "Using system wide (global) rakefiles (usually '~/.rake/*.rake').",
372
+ lambda { |value| options.load_system = true }
373
+ ],
374
+ ['--no-system', '--nosystem', '-G',
375
+ "Use standard project Rakefile search paths, ignore system wide rakefiles.",
376
+ lambda { |value| options.ignore_system = true }
377
+ ],
378
+ ['--tasks', '-T [PATTERN]', "Display the tasks (matching optional PATTERN) with descriptions, then exit.",
379
+ lambda { |value|
380
+ options.show_tasks = :tasks
381
+ options.show_task_pattern = Regexp.new(value || '')
382
+ Rake::TaskManager.record_task_metadata = true
383
+ }
384
+ ],
385
+ ['--trace', '-t', "Turn on invoke/execute tracing, enable full backtrace.",
386
+ lambda { |value|
387
+ options.trace = true
388
+ Rake.verbose(true)
389
+ }
390
+ ],
391
+ ['--verbose', '-v', "Log message to standard output.",
392
+ lambda { |value| Rake.verbose(true) }
393
+ ],
394
+ ['--version', '-V', "Display the program version.",
395
+ lambda { |value|
396
+ puts "rake, version #{RAKEVERSION}"
397
+ exit
398
+ }
399
+ ],
400
+ ['--where', '-W [PATTERN]', "Describe the tasks (matching optional PATTERN), then exit.",
401
+ lambda { |value|
402
+ options.show_tasks = :lines
403
+ options.show_task_pattern = Regexp.new(value || '')
404
+ Rake::TaskManager.record_task_metadata = true
405
+ }
406
+ ],
407
+ ['--no-deprecation-warnings', '-X', "Disable the deprecation warnings.",
408
+ lambda { |value|
409
+ options.ignore_deprecate = true
410
+ }
411
+ ],
412
+ ]
413
+ end
414
+
415
+ # Read and handle the command line options.
416
+ def handle_options
417
+ options.rakelib = ['rakelib']
418
+
419
+ OptionParser.new do |opts|
420
+ opts.banner = "rake [-f rakefile] {options} targets..."
421
+ opts.separator ""
422
+ opts.separator "Options are ..."
423
+
424
+ opts.on_tail("-h", "--help", "-H", "Display this help message.") do
425
+ puts opts
426
+ exit
427
+ end
428
+
429
+ standard_rake_options.each { |args| opts.on(*args) }
430
+ opts.environment('RAKEOPT')
431
+ end.parse!
432
+
433
+ # If class namespaces are requested, set the global options
434
+ # according to the values in the options structure.
435
+ if options.classic_namespace
436
+ $show_tasks = options.show_tasks
437
+ $show_prereqs = options.show_prereqs
438
+ $trace = options.trace
439
+ $dryrun = options.dryrun
440
+ $silent = options.silent
441
+ end
442
+ end
443
+
444
+ # Similar to the regular Ruby +require+ command, but will check
445
+ # for *.rake files in addition to *.rb files.
446
+ def rake_require(file_name, paths=$LOAD_PATH, loaded=$")
447
+ fn = file_name + ".rake"
448
+ return false if loaded.include?(fn)
449
+ paths.each do |path|
450
+ full_path = File.join(path, fn)
451
+ if File.exist?(full_path)
452
+ Rake.load_rakefile(full_path)
453
+ loaded << fn
454
+ return true
455
+ end
456
+ end
457
+ fail LoadError, "Can't find #{file_name}"
458
+ end
459
+
460
+ def find_rakefile_location
461
+ here = Dir.pwd
462
+ while ! (fn = have_rakefile)
463
+ Dir.chdir("..")
464
+ if Dir.pwd == here || options.nosearch
465
+ return nil
466
+ end
467
+ here = Dir.pwd
468
+ end
469
+ [fn, here]
470
+ ensure
471
+ Dir.chdir(Rake.original_dir)
472
+ end
473
+
474
+ def print_rakefile_directory(location)
475
+ $stderr.puts "(in #{Dir.pwd})" unless
476
+ options.silent or original_dir == location
477
+ end
478
+
479
+ def raw_load_rakefile # :nodoc:
480
+ rakefile, location = find_rakefile_location
481
+ if (! options.ignore_system) &&
482
+ (options.load_system || rakefile.nil?) &&
483
+ system_dir && File.directory?(system_dir)
484
+ print_rakefile_directory(location)
485
+ glob("#{system_dir}/*.rake") do |name|
486
+ add_import name
487
+ end
488
+ else
489
+ fail "No Rakefile found (looking for: #{@rakefiles.join(', ')})" if
490
+ rakefile.nil?
491
+ @rakefile = rakefile
492
+ Dir.chdir(location)
493
+ print_rakefile_directory(location)
494
+ $rakefile = @rakefile if options.classic_namespace
495
+ Rake.load_rakefile(File.expand_path(@rakefile)) if @rakefile && @rakefile != ''
496
+ options.rakelib.each do |rlib|
497
+ glob("#{rlib}/*.rake") do |name|
498
+ add_import name
499
+ end
500
+ end
501
+ end
502
+ load_imports
503
+ end
504
+
505
+ def glob(path, &block)
506
+ Dir[path.gsub("\\", '/')].each(&block)
507
+ end
508
+ private :glob
509
+
510
+ # The directory path containing the system wide rakefiles.
511
+ def system_dir
512
+ @system_dir ||=
513
+ begin
514
+ if ENV['RAKE_SYSTEM']
515
+ ENV['RAKE_SYSTEM']
516
+ else
517
+ standard_system_dir
518
+ end
519
+ end
520
+ end
521
+
522
+ # The standard directory containing system wide rake files.
523
+ if Win32.windows?
524
+ def standard_system_dir #:nodoc:
525
+ Win32.win32_system_dir
526
+ end
527
+ else
528
+ def standard_system_dir #:nodoc:
529
+ File.join(File.expand_path('~'), '.rake')
530
+ end
531
+ end
532
+ private :standard_system_dir
533
+
534
+ # Collect the list of tasks on the command line. If no tasks are
535
+ # given, return a list containing only the default task.
536
+ # Environmental assignments are processed at this time as well.
537
+ def collect_tasks
538
+ @top_level_tasks = []
539
+ ARGV.each do |arg|
540
+ if arg =~ /^(\w+)=(.*)$/
541
+ ENV[$1] = $2
542
+ else
543
+ @top_level_tasks << arg unless arg =~ /^-/
544
+ end
545
+ end
546
+ @top_level_tasks.push("default") if @top_level_tasks.size == 0
547
+ end
548
+
549
+ # Add a file to the list of files to be imported.
550
+ def add_import(fn)
551
+ @pending_imports << fn
552
+ end
553
+
554
+ # Load the pending list of imported files.
555
+ def load_imports
556
+ while fn = @pending_imports.shift
557
+ next if @imported.member?(fn)
558
+ if fn_task = lookup(fn)
559
+ fn_task.invoke
560
+ end
561
+ ext = File.extname(fn)
562
+ loader = @loaders[ext] || @default_loader
563
+ loader.load(fn)
564
+ @imported << fn
565
+ end
566
+ end
567
+
568
+ # Warn about deprecated use of top level constant names.
569
+ def const_warning(const_name)
570
+ @const_warning ||= false
571
+ if ! @const_warning
572
+ $stderr.puts %{WARNING: Deprecated reference to top-level constant '#{const_name}' } +
573
+ %{found at: #{rakefile_location}} # '
574
+ $stderr.puts %{ Use --classic-namespace on rake command}
575
+ $stderr.puts %{ or 'require "rake/classic_namespace"' in Rakefile}
576
+ end
577
+ @const_warning = true
578
+ end
579
+
580
+ def rakefile_location backtrace = caller
581
+ backtrace.map { |t| t[/([^:]+):/,1] }
582
+
583
+ re = /^#{@rakefile}$/
584
+ re = /#{re.source}/i if windows?
585
+
586
+ backtrace.find { |str| str =~ re } || ''
587
+ end
588
+ end
589
+ end