search_biomodel 0.1.2 → 1.0.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (1059) hide show
  1. data/Gemfile +1 -2
  2. data/Gemfile.lock +17 -3
  3. data/README.rdoc +9 -2
  4. data/VERSION +1 -1
  5. data/lib/search_biomodel.rb +11 -8
  6. data/search_biomodel.gemspec +1055 -9
  7. data/search_biomodel/ruby/1.8/bin/jeweler +19 -0
  8. data/search_biomodel/ruby/1.8/bin/nokogiri +19 -0
  9. data/search_biomodel/ruby/1.8/bin/rackup +19 -0
  10. data/search_biomodel/ruby/1.8/bin/rake +19 -0
  11. data/search_biomodel/ruby/1.8/bin/rcov +19 -0
  12. data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
  13. data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
  14. data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
  15. data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
  16. data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
  17. data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
  18. data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
  19. data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
  20. data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
  21. data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
  22. data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
  23. data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
  24. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +89 -0
  25. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +229 -0
  26. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +232 -0
  27. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +296 -0
  28. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +55364 -0
  29. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +109 -0
  30. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +13 -0
  31. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +23 -0
  32. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +197 -0
  33. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +160 -0
  34. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +63 -0
  35. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +334 -0
  36. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +40 -0
  37. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +39 -0
  38. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +225 -0
  39. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +125 -0
  40. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +150 -0
  41. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +546 -0
  42. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +39 -0
  43. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +77 -0
  44. data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +240 -0
  45. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +156 -0
  46. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +14 -0
  47. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +479 -0
  48. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +104 -0
  49. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +48 -0
  50. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +146 -0
  51. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +5 -0
  52. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +719 -0
  53. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +117 -0
  54. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +273 -0
  55. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +27 -0
  56. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +40 -0
  57. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +4 -0
  58. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +27 -0
  59. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +44 -0
  60. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +110 -0
  61. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +4 -0
  62. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
  63. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +9 -0
  64. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +1 -0
  65. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +7 -0
  66. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +55 -0
  67. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +2 -0
  68. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +20 -0
  69. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +81 -0
  70. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +11 -0
  71. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +26 -0
  72. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +23 -0
  73. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +45 -0
  74. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +19 -0
  75. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +55 -0
  76. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +5 -0
  77. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +63 -0
  78. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +28 -0
  79. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +53 -0
  80. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +17 -0
  81. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +160 -0
  82. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +77 -0
  83. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +49 -0
  84. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +46 -0
  85. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +2 -0
  86. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +5 -0
  87. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
  88. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +9 -0
  89. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +1 -0
  90. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +7 -0
  91. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +60 -0
  92. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +8 -0
  93. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +20 -0
  94. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +223 -0
  95. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +18 -0
  96. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +1 -0
  97. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +28 -0
  98. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +198 -0
  99. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +67 -0
  100. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +125 -0
  101. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +98 -0
  102. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +117 -0
  103. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +81 -0
  104. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +91 -0
  105. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +56 -0
  106. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +90 -0
  107. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +85 -0
  108. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +5 -0
  109. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
  110. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +16 -0
  111. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +15 -0
  112. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
  113. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +10 -0
  114. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
  115. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +1 -0
  116. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +232 -0
  117. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +164 -0
  118. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +142 -0
  119. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +55 -0
  120. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +117 -0
  121. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +128 -0
  122. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +284 -0
  123. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +135 -0
  124. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +125 -0
  125. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +95 -0
  126. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +39 -0
  127. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +12 -0
  128. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +27 -0
  129. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +19 -0
  130. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +8 -0
  131. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +166 -0
  132. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +22 -0
  133. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +59 -0
  134. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +20 -0
  135. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +216 -0
  136. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +81 -0
  137. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +5 -0
  138. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +103 -0
  139. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +86 -0
  140. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +13 -0
  141. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +9 -0
  142. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +71 -0
  143. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +102 -0
  144. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +20 -0
  145. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +158 -0
  146. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +12 -0
  147. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +54 -0
  148. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +149 -0
  149. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +5 -0
  150. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +6 -0
  151. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +70 -0
  152. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +382 -0
  153. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +6 -0
  154. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +42 -0
  155. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +9 -0
  156. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +31 -0
  157. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +49 -0
  158. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +244 -0
  159. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler.rb +177 -0
  160. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +20 -0
  161. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +36 -0
  162. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +50 -0
  163. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +31 -0
  164. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +82 -0
  165. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +59 -0
  166. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +28 -0
  167. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +30 -0
  168. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +55 -0
  169. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +13 -0
  170. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +12 -0
  171. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +14 -0
  172. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +12 -0
  173. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +39 -0
  174. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +8 -0
  175. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +8 -0
  176. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +87 -0
  177. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +287 -0
  178. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +61 -0
  179. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +43 -0
  180. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +29 -0
  181. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +41 -0
  182. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +42 -0
  183. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +162 -0
  184. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +9 -0
  185. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +42 -0
  186. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +42 -0
  187. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +44 -0
  188. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +42 -0
  189. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +42 -0
  190. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +39 -0
  191. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +14 -0
  192. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +95 -0
  193. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +38 -0
  194. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +38 -0
  195. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +110 -0
  196. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +224 -0
  197. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +5 -0
  198. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +48 -0
  199. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +12 -0
  200. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +20 -0
  201. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +19 -0
  202. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Rakefile +9 -0
  203. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/flunking.rb +7 -0
  204. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/helper.rb +9 -0
  205. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bundler_setup.erb +10 -0
  206. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/default.feature +9 -0
  207. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/support/env.rb +10 -0
  208. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/jeweler_tasks.erb +31 -0
  209. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/micronaut/flunking.rb +7 -0
  210. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/micronaut/helper.rb +18 -0
  211. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/minitest/flunking.rb +7 -0
  212. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/minitest/helper.rb +12 -0
  213. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/other_tasks.erb +86 -0
  214. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/riot/flunking.rb +11 -0
  215. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/riot/helper.rb +4 -0
  216. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/rspec/.rspec +1 -0
  217. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/rspec/flunking.rb +7 -0
  218. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/rspec/helper.rb +12 -0
  219. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shindo/flunking.rb +8 -0
  220. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shindo/helper.rb +6 -0
  221. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shoulda/flunking.rb +7 -0
  222. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shoulda/helper.rb +11 -0
  223. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testspec/flunking.rb +7 -0
  224. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testspec/helper.rb +7 -0
  225. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testunit/flunking.rb +7 -0
  226. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testunit/helper.rb +10 -0
  227. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/version.rb +10 -0
  228. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/version_helper.rb +141 -0
  229. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/VERSION.yml +4 -0
  230. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/bin/foo_the_ultimate_bin +1 -0
  231. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/hey_include_me_in_gemspec +0 -0
  232. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/lib/foo_the_ultimate_lib.rb +1 -0
  233. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/.document +5 -0
  234. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/.gitignore +5 -0
  235. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/LICENSE.txt +20 -0
  236. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/README.rdoc +7 -0
  237. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/Rakefile +85 -0
  238. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/existing-project-with-version.gemspec +29 -0
  239. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/lib/existing_project_with_version.rb +0 -0
  240. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/test/existing_project_with_version_test.rb +7 -0
  241. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/test/test_helper.rb +10 -0
  242. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/.document +5 -0
  243. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/.gitignore +5 -0
  244. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/LICENSE.txt +20 -0
  245. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/README.rdoc +7 -0
  246. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/Rakefile +84 -0
  247. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/VERSION +1 -0
  248. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/existing-project-with-version.gemspec +29 -0
  249. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/lib/existing_project_with_version.rb +0 -0
  250. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/test/existing_project_with_version_test.rb +7 -0
  251. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/test/test_helper.rb +10 -0
  252. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/.document +5 -0
  253. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/.gitignore +5 -0
  254. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/LICENSE.txt +20 -0
  255. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/README.rdoc +7 -0
  256. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/Rakefile +84 -0
  257. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/VERSION.yml +4 -0
  258. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/bin/foo_the_ultimate_bin +0 -0
  259. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/existing-project-with-version.gemspec +29 -0
  260. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/lib/existing_project_with_version.rb +0 -0
  261. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/test/existing_project_with_version_test.rb +7 -0
  262. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/test/test_helper.rb +10 -0
  263. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/geminstaller.yml +12 -0
  264. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_build_gem.rb +103 -0
  265. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_install_gem.rb +35 -0
  266. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_release_to_gemcutter.rb +39 -0
  267. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_release_to_git.rb +208 -0
  268. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_release_to_github.rb +406 -0
  269. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_validate_gemspec.rb +27 -0
  270. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_write_gemspec.rb +101 -0
  271. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_base.rb +32 -0
  272. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_bump_major.rb +22 -0
  273. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_bump_minor.rb +19 -0
  274. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_bump_patch.rb +20 -0
  275. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_write.rb +22 -0
  276. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/generator/test_application.rb +120 -0
  277. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/generator/test_options.rb +225 -0
  278. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_gemspec_helper.rb +44 -0
  279. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_generator.rb +127 -0
  280. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_generator_initialization.rb +164 -0
  281. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_generator_mixins.rb +23 -0
  282. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_specification.rb +237 -0
  283. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_tasks.rb +50 -0
  284. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_version_helper.rb +214 -0
  285. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/shoulda_macros/jeweler_macros.rb +35 -0
  286. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/test_helper.rb +178 -0
  287. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/test_jeweler.rb +175 -0
  288. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/.autotest +26 -0
  289. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/.gemtest +0 -0
  290. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/CHANGELOG.ja.rdoc +480 -0
  291. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/CHANGELOG.rdoc +475 -0
  292. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/Manifest.txt +283 -0
  293. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/README.ja.rdoc +102 -0
  294. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/README.rdoc +146 -0
  295. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/Rakefile +191 -0
  296. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/bin/nokogiri +54 -0
  297. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/Makefile +515 -0
  298. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/depend +358 -0
  299. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/extconf.rb +118 -0
  300. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_document.c +154 -0
  301. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_document.h +10 -0
  302. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_document.o +0 -0
  303. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_element_description.c +276 -0
  304. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_element_description.h +10 -0
  305. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_element_description.o +0 -0
  306. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_entity_lookup.c +32 -0
  307. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_entity_lookup.h +8 -0
  308. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_entity_lookup.o +0 -0
  309. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_sax_parser_context.c +94 -0
  310. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_sax_parser_context.h +11 -0
  311. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_sax_parser_context.o +0 -0
  312. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/mkmf.log +278 -0
  313. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.c +97 -0
  314. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.h +162 -0
  315. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.o +0 -0
  316. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.so +0 -0
  317. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attr.c +94 -0
  318. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attr.h +9 -0
  319. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attr.o +0 -0
  320. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attribute_decl.c +70 -0
  321. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attribute_decl.h +9 -0
  322. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attribute_decl.o +0 -0
  323. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_cdata.c +56 -0
  324. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_cdata.h +9 -0
  325. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_cdata.o +0 -0
  326. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_comment.c +54 -0
  327. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_comment.h +9 -0
  328. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_comment.o +0 -0
  329. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document.c +478 -0
  330. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document.h +23 -0
  331. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document.o +0 -0
  332. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document_fragment.c +48 -0
  333. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document_fragment.h +10 -0
  334. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document_fragment.o +0 -0
  335. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_dtd.c +202 -0
  336. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_dtd.h +10 -0
  337. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_dtd.o +0 -0
  338. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_content.c +123 -0
  339. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_content.h +10 -0
  340. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_content.o +0 -0
  341. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_decl.c +69 -0
  342. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_decl.h +9 -0
  343. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_decl.o +0 -0
  344. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_encoding_handler.c +79 -0
  345. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_encoding_handler.h +8 -0
  346. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_encoding_handler.o +0 -0
  347. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_decl.c +110 -0
  348. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_decl.h +10 -0
  349. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_decl.o +0 -0
  350. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_reference.c +52 -0
  351. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_reference.h +9 -0
  352. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_reference.o +0 -0
  353. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_io.c +56 -0
  354. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_io.h +11 -0
  355. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_io.o +0 -0
  356. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_libxml2_hacks.c +112 -0
  357. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_libxml2_hacks.h +12 -0
  358. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_libxml2_hacks.o +0 -0
  359. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_namespace.c +84 -0
  360. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_namespace.h +13 -0
  361. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_namespace.o +0 -0
  362. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node.c +1391 -0
  363. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node.h +13 -0
  364. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node.o +0 -0
  365. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node_set.c +418 -0
  366. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node_set.h +9 -0
  367. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node_set.o +0 -0
  368. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_processing_instruction.c +56 -0
  369. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_processing_instruction.h +9 -0
  370. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_processing_instruction.o +0 -0
  371. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_reader.c +684 -0
  372. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_reader.h +10 -0
  373. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_reader.o +0 -0
  374. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.c +168 -0
  375. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.h +9 -0
  376. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.o +0 -0
  377. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser.c +288 -0
  378. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser.h +39 -0
  379. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser.o +0 -0
  380. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.c +199 -0
  381. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.h +10 -0
  382. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.o +0 -0
  383. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_push_parser.c +115 -0
  384. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_push_parser.h +9 -0
  385. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_push_parser.o +0 -0
  386. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_schema.c +205 -0
  387. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_schema.h +9 -0
  388. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_schema.o +0 -0
  389. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_syntax_error.c +58 -0
  390. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_syntax_error.h +13 -0
  391. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_syntax_error.o +0 -0
  392. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_text.c +50 -0
  393. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_text.h +9 -0
  394. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_text.o +0 -0
  395. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_xpath_context.c +309 -0
  396. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_xpath_context.h +9 -0
  397. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_xpath_context.o +0 -0
  398. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xslt_stylesheet.c +260 -0
  399. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xslt_stylesheet.h +9 -0
  400. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xslt_stylesheet.o +0 -0
  401. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri.rb +133 -0
  402. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css.rb +28 -0
  403. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/node.rb +99 -0
  404. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/parser.rb +677 -0
  405. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/parser.y +237 -0
  406. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/parser_extras.rb +91 -0
  407. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/syntax_error.rb +7 -0
  408. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/tokenizer.rb +152 -0
  409. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/tokenizer.rex +55 -0
  410. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/xpath_visitor.rb +171 -0
  411. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/decorators/slop.rb +35 -0
  412. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/encoding_handler.rb +42 -0
  413. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/document.rb +28 -0
  414. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/element_description.rb +81 -0
  415. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/entity_lookup.rb +16 -0
  416. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/sax/parser_context.rb +38 -0
  417. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/io_callbacks.rb +42 -0
  418. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/libxml.rb +420 -0
  419. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/common_node.rb +38 -0
  420. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_elem_desc.rb +24 -0
  421. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_entity_desc.rb +13 -0
  422. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_alloc.rb +16 -0
  423. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attr.rb +20 -0
  424. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attribute.rb +27 -0
  425. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_buffer.rb +16 -0
  426. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_char_encoding_handler.rb +11 -0
  427. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_document.rb +117 -0
  428. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_dtd.rb +28 -0
  429. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element.rb +26 -0
  430. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element_content.rb +17 -0
  431. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_entity.rb +32 -0
  432. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_enumeration.rb +12 -0
  433. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node.rb +28 -0
  434. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node_set.rb +53 -0
  435. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_notation.rb +11 -0
  436. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_ns.rb +15 -0
  437. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_context.rb +20 -0
  438. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_input.rb +19 -0
  439. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_relax_ng.rb +14 -0
  440. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_handler.rb +51 -0
  441. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_push_parser_context.rb +124 -0
  442. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_schema.rb +13 -0
  443. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_syntax_error.rb +31 -0
  444. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_text_reader.rb +12 -0
  445. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_context.rb +38 -0
  446. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_object.rb +35 -0
  447. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_parser_context.rb +20 -0
  448. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xslt_stylesheet.rb +13 -0
  449. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/weak_bucket.rb +40 -0
  450. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attr.rb +41 -0
  451. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attribute_decl.rb +27 -0
  452. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/cdata.rb +19 -0
  453. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/comment.rb +18 -0
  454. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/document.rb +174 -0
  455. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/document_fragment.rb +21 -0
  456. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/dtd.rb +67 -0
  457. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_content.rb +43 -0
  458. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_decl.rb +19 -0
  459. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_decl.rb +36 -0
  460. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_reference.rb +19 -0
  461. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/namespace.rb +44 -0
  462. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/node.rb +559 -0
  463. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/node_set.rb +150 -0
  464. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/processing_instruction.rb +20 -0
  465. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/reader.rb +236 -0
  466. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/relax_ng.rb +85 -0
  467. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser.rb +143 -0
  468. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser_context.rb +79 -0
  469. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/push_parser.rb +51 -0
  470. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/schema.rb +109 -0
  471. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/syntax_error.rb +98 -0
  472. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/text.rb +18 -0
  473. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath.rb +9 -0
  474. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath_context.rb +153 -0
  475. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xslt/stylesheet.rb +77 -0
  476. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html.rb +35 -0
  477. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/builder.rb +35 -0
  478. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document.rb +209 -0
  479. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document_fragment.rb +41 -0
  480. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/element_description.rb +23 -0
  481. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/entity_lookup.rb +13 -0
  482. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser.rb +52 -0
  483. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser_context.rb +16 -0
  484. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/nokogiri.so +0 -0
  485. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/syntax_error.rb +4 -0
  486. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version.rb +43 -0
  487. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version_warning.rb +14 -0
  488. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml.rb +67 -0
  489. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/attr.rb +14 -0
  490. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/attribute_decl.rb +18 -0
  491. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/builder.rb +418 -0
  492. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/cdata.rb +11 -0
  493. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/character_data.rb +7 -0
  494. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document.rb +218 -0
  495. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document_fragment.rb +84 -0
  496. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/dtd.rb +22 -0
  497. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_content.rb +36 -0
  498. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_decl.rb +13 -0
  499. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/entity_decl.rb +19 -0
  500. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/namespace.rb +13 -0
  501. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node.rb +891 -0
  502. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node/save_options.rb +52 -0
  503. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node_set.rb +350 -0
  504. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/notation.rb +6 -0
  505. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/parse_options.rb +93 -0
  506. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp.rb +2 -0
  507. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/character_data.rb +18 -0
  508. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/node.rb +56 -0
  509. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/processing_instruction.rb +8 -0
  510. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/reader.rb +112 -0
  511. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/relax_ng.rb +32 -0
  512. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax.rb +4 -0
  513. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/document.rb +164 -0
  514. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser.rb +115 -0
  515. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser_context.rb +16 -0
  516. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/push_parser.rb +60 -0
  517. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/schema.rb +63 -0
  518. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/syntax_error.rb +47 -0
  519. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/text.rb +9 -0
  520. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath.rb +10 -0
  521. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath/syntax_error.rb +11 -0
  522. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath_context.rb +16 -0
  523. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xslt.rb +52 -0
  524. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xslt/stylesheet.rb +25 -0
  525. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/xsd/xmlparser/nokogiri.rb +90 -0
  526. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/tasks/cross_compile.rb +173 -0
  527. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/tasks/test.rb +94 -0
  528. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_nthiness.rb +159 -0
  529. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_parser.rb +303 -0
  530. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_tokenizer.rb +198 -0
  531. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_xpath_visitor.rb +85 -0
  532. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/decorators/test_slop.rb +16 -0
  533. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/ffi/test_document.rb +35 -0
  534. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/2ch.html +108 -0
  535. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/address_book.rlx +12 -0
  536. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/address_book.xml +10 -0
  537. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/bar/bar.xsd +4 -0
  538. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/dont_hurt_em_why.xml +422 -0
  539. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/encoding.html +82 -0
  540. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/encoding.xhtml +84 -0
  541. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/exslt.xml +8 -0
  542. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/exslt.xslt +35 -0
  543. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/foo/foo.xsd +4 -0
  544. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/po.xml +32 -0
  545. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/po.xsd +66 -0
  546. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/shift_jis.html +10 -0
  547. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/shift_jis.xml +5 -0
  548. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/snuggles.xml +3 -0
  549. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/staff.dtd +10 -0
  550. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/staff.xml +59 -0
  551. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/staff.xslt +32 -0
  552. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/tlm.html +850 -0
  553. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/valid_bar.xml +2 -0
  554. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/helper.rb +171 -0
  555. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/sax/test_parser.rb +119 -0
  556. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/sax/test_parser_context.rb +48 -0
  557. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_builder.rb +164 -0
  558. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_document.rb +453 -0
  559. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_document_encoding.rb +123 -0
  560. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_document_fragment.rb +253 -0
  561. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_element_description.rb +98 -0
  562. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_named_characters.rb +14 -0
  563. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_node.rb +190 -0
  564. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_node_encoding.rb +27 -0
  565. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_convert_xpath.rb +135 -0
  566. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_css_cache.rb +45 -0
  567. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_encoding_handler.rb +46 -0
  568. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_memory_leak.rb +107 -0
  569. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_nokogiri.rb +138 -0
  570. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_reader.rb +421 -0
  571. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_soap4r_sax.rb +52 -0
  572. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_xslt_transforms.rb +193 -0
  573. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/node/test_save_options.rb +20 -0
  574. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/node/test_subclass.rb +44 -0
  575. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/sax/test_parser.rb +331 -0
  576. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/sax/test_parser_context.rb +113 -0
  577. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/sax/test_push_parser.rb +156 -0
  578. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_attr.rb +65 -0
  579. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_attribute_decl.rb +82 -0
  580. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_builder.rb +210 -0
  581. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_cdata.rb +50 -0
  582. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_comment.rb +29 -0
  583. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document.rb +670 -0
  584. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document_encoding.rb +26 -0
  585. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document_fragment.rb +192 -0
  586. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_dtd.rb +97 -0
  587. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_dtd_encoding.rb +33 -0
  588. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_element_content.rb +56 -0
  589. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_element_decl.rb +73 -0
  590. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_entity_decl.rb +120 -0
  591. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_entity_reference.rb +21 -0
  592. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_namespace.rb +68 -0
  593. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node.rb +906 -0
  594. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_attributes.rb +34 -0
  595. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_encoding.rb +107 -0
  596. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_reparenting.rb +321 -0
  597. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_set.rb +708 -0
  598. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_parse_options.rb +52 -0
  599. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_processing_instruction.rb +30 -0
  600. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_reader_encoding.rb +126 -0
  601. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_relax_ng.rb +60 -0
  602. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_schema.rb +94 -0
  603. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_syntax_error.rb +12 -0
  604. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_text.rb +47 -0
  605. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_unparented_node.rb +381 -0
  606. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_xpath.rb +237 -0
  607. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xslt/test_custom_functions.rb +94 -0
  608. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.gitignore +7 -0
  609. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.rspec +1 -0
  610. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.travis.yml +8 -0
  611. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/CHANGELOG.md +90 -0
  612. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/Gemfile +4 -0
  613. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/LICENSE +20 -0
  614. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/README.md +64 -0
  615. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/Rakefile +16 -0
  616. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/benchmark/benchmark.rb +19 -0
  617. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/benchmark/soap_response.xml +266 -0
  618. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori.rb +59 -0
  619. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext.rb +3 -0
  620. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/hash.rb +70 -0
  621. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/object.rb +13 -0
  622. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/string.rb +21 -0
  623. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/parser.rb +51 -0
  624. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/parser/nokogiri.rb +45 -0
  625. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/parser/rexml.rb +38 -0
  626. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/string_io_file.rb +7 -0
  627. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/string_with_attributes.rb +7 -0
  628. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/version.rb +5 -0
  629. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/xml_utility_node.rb +230 -0
  630. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/nori.gemspec +24 -0
  631. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/core_ext/hash_spec.rb +60 -0
  632. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/core_ext/object_spec.rb +19 -0
  633. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/core_ext/string_spec.rb +33 -0
  634. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/nori_spec.rb +641 -0
  635. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/parser_spec.rb +37 -0
  636. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/spec_helper.rb +2 -0
  637. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/README +25 -0
  638. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/Rakefile +68 -0
  639. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/examples/http.rb +86 -0
  640. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/examples/imap.rb +73 -0
  641. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/examples/smtp.rb +94 -0
  642. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/lib/net/ntlm.rb +775 -0
  643. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/lib/net/ntlm_http.rb +87 -0
  644. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/test/function_test.rb +111 -0
  645. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/COPYING +18 -0
  646. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/KNOWN-ISSUES +21 -0
  647. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/README +425 -0
  648. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/Rakefile +100 -0
  649. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/SPEC +171 -0
  650. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/bin/rackup +4 -0
  651. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/contrib/rack_logo.svg +111 -0
  652. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/example/lobster.ru +4 -0
  653. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/example/protectedlobster.rb +14 -0
  654. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/example/protectedlobster.ru +8 -0
  655. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack.rb +82 -0
  656. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/abstract/handler.rb +37 -0
  657. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/abstract/request.rb +43 -0
  658. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/basic.rb +58 -0
  659. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/md5.rb +129 -0
  660. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/nonce.rb +51 -0
  661. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/params.rb +53 -0
  662. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/request.rb +40 -0
  663. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/backports/uri/common.rb +64 -0
  664. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/builder.rb +137 -0
  665. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/cascade.rb +41 -0
  666. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/chunked.rb +56 -0
  667. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/commonlogger.rb +49 -0
  668. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/conditionalget.rb +66 -0
  669. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/config.rb +15 -0
  670. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/content_length.rb +33 -0
  671. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/content_type.rb +23 -0
  672. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/deflater.rb +99 -0
  673. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/directory.rb +157 -0
  674. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/etag.rb +60 -0
  675. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/file.rb +125 -0
  676. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler.rb +94 -0
  677. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/cgi.rb +61 -0
  678. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/evented_mongrel.rb +8 -0
  679. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/fastcgi.rb +98 -0
  680. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/lsws.rb +61 -0
  681. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/mongrel.rb +100 -0
  682. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/scgi.rb +67 -0
  683. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/swiftiplied_mongrel.rb +8 -0
  684. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/thin.rb +24 -0
  685. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/webrick.rb +80 -0
  686. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/head.rb +19 -0
  687. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/lint.rb +567 -0
  688. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/lobster.rb +65 -0
  689. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/lock.rb +44 -0
  690. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/logger.rb +18 -0
  691. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/methodoverride.rb +27 -0
  692. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/mime.rb +210 -0
  693. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/mock.rb +185 -0
  694. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart.rb +34 -0
  695. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart/generator.rb +93 -0
  696. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart/parser.rb +164 -0
  697. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart/uploaded_file.rb +30 -0
  698. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/nulllogger.rb +18 -0
  699. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/recursive.rb +61 -0
  700. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/reloader.rb +109 -0
  701. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/request.rb +309 -0
  702. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/response.rb +152 -0
  703. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/rewindable_input.rb +104 -0
  704. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/runtime.rb +27 -0
  705. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/sendfile.rb +140 -0
  706. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/server.rb +323 -0
  707. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/abstract/id.rb +351 -0
  708. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/cookie.rb +152 -0
  709. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/memcache.rb +93 -0
  710. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/pool.rb +79 -0
  711. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/showexceptions.rb +378 -0
  712. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/showstatus.rb +113 -0
  713. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/static.rb +58 -0
  714. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/urlmap.rb +60 -0
  715. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/utils.rb +480 -0
  716. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/rack.gemspec +37 -0
  717. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/anything.rb +5 -0
  718. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/comment.ru +4 -0
  719. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/end.ru +3 -0
  720. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/options.ru +2 -0
  721. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/lighttpd.conf +25 -0
  722. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/rackup_stub.rb +6 -0
  723. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/sample_rackup.ru +5 -0
  724. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/test +9 -0
  725. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/test.fcgi +8 -0
  726. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/test.ru +5 -0
  727. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/gemloader.rb +6 -0
  728. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/bad_robots +259 -0
  729. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/binary +0 -0
  730. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/content_type_and_no_filename +6 -0
  731. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/empty +10 -0
  732. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/fail_16384_nofile +814 -0
  733. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/file1.txt +1 -0
  734. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_and_modification_param +7 -0
  735. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_escaped_quotes +6 -0
  736. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_escaped_quotes_and_modification_param +7 -0
  737. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_percent_escaped_quotes +6 -0
  738. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_unescaped_quotes +6 -0
  739. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/ie +6 -0
  740. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/mixed_files +21 -0
  741. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/nested +10 -0
  742. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/none +9 -0
  743. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/semicolon +6 -0
  744. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/text +15 -0
  745. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/webkit +32 -0
  746. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/rackup/config.ru +31 -0
  747. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/registering_handler/rack/handler/registering_myself.rb +8 -0
  748. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_auth_basic.rb +70 -0
  749. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_auth_digest.rb +244 -0
  750. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_builder.rb +152 -0
  751. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_cascade.rb +45 -0
  752. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_cgi.rb +102 -0
  753. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_chunked.rb +60 -0
  754. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_commonlogger.rb +56 -0
  755. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_conditionalget.rb +86 -0
  756. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_config.rb +23 -0
  757. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_content_length.rb +73 -0
  758. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_content_type.rb +29 -0
  759. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_deflater.rb +169 -0
  760. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_directory.rb +57 -0
  761. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_etag.rb +82 -0
  762. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_fastcgi.rb +107 -0
  763. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_file.rb +122 -0
  764. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_handler.rb +59 -0
  765. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_head.rb +30 -0
  766. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_lint.rb +515 -0
  767. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_lobster.rb +43 -0
  768. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_lock.rb +142 -0
  769. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_logger.rb +28 -0
  770. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_methodoverride.rb +58 -0
  771. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_mock.rb +241 -0
  772. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_mongrel.rb +182 -0
  773. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_multipart.rb +287 -0
  774. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_nulllogger.rb +12 -0
  775. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_recursive.rb +69 -0
  776. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_request.rb +813 -0
  777. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_response.rb +246 -0
  778. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_rewindable_input.rb +118 -0
  779. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_runtime.rb +39 -0
  780. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_sendfile.rb +83 -0
  781. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_server.rb +74 -0
  782. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_abstract_id.rb +43 -0
  783. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_cookie.rb +210 -0
  784. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_memcache.rb +289 -0
  785. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_pool.rb +200 -0
  786. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_showexceptions.rb +87 -0
  787. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_showstatus.rb +79 -0
  788. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_static.rb +56 -0
  789. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_thin.rb +86 -0
  790. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_urlmap.rb +213 -0
  791. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_utils.rb +430 -0
  792. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_webrick.rb +141 -0
  793. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/testrequest.rb +78 -0
  794. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/unregistered_handler/rack/handler/unregistered.rb +7 -0
  795. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/unregistered_handler/rack/handler/unregistered_long_one.rb +7 -0
  796. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/.gemtest +0 -0
  797. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/CHANGES +509 -0
  798. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/MIT-LICENSE +21 -0
  799. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/README.rdoc +200 -0
  800. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/RRR +9 -0
  801. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/Rakefile +405 -0
  802. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/TODO +20 -0
  803. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/bin/rake +32 -0
  804. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/install.rb +90 -0
  805. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake.rb +65 -0
  806. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/alt_system.rb +109 -0
  807. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/application.rb +589 -0
  808. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/classic_namespace.rb +9 -0
  809. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/clean.rb +31 -0
  810. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/cloneable.rb +25 -0
  811. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/compositepublisher.rb +21 -0
  812. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/ftptools.rb +150 -0
  813. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/publisher.rb +69 -0
  814. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/rubyforgepublisher.rb +16 -0
  815. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/sshpublisher.rb +45 -0
  816. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/sys.rb +191 -0
  817. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/default_loader.rb +10 -0
  818. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/dsl_definition.rb +167 -0
  819. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/early_time.rb +18 -0
  820. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/core.rb +27 -0
  821. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/module.rb +39 -0
  822. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/string.rb +167 -0
  823. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/time.rb +14 -0
  824. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_creation_task.rb +24 -0
  825. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_list.rb +403 -0
  826. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_task.rb +47 -0
  827. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_utils.rb +112 -0
  828. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_utils_ext.rb +142 -0
  829. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/gempackagetask.rb +13 -0
  830. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/invocation_chain.rb +51 -0
  831. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/invocation_exception_mixin.rb +16 -0
  832. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/loaders/makefile.rb +40 -0
  833. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/multi_task.rb +16 -0
  834. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/name_space.rb +25 -0
  835. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/packagetask.rb +185 -0
  836. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/pathmap.rb +1 -0
  837. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/pseudo_status.rb +24 -0
  838. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rake_module.rb +29 -0
  839. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rake_test_loader.rb +13 -0
  840. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rdoctask.rb +230 -0
  841. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ruby182_test_unit_fix.rb +25 -0
  842. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rule_recursion_overflow_error.rb +20 -0
  843. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/runtest.rb +21 -0
  844. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task.rb +327 -0
  845. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task_argument_error.rb +7 -0
  846. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task_arguments.rb +74 -0
  847. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task_manager.rb +307 -0
  848. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/tasklib.rb +22 -0
  849. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/testtask.rb +191 -0
  850. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/version.rb +10 -0
  851. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/win32.rb +55 -0
  852. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/check_expansion.rb +5 -0
  853. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/check_no_expansion.rb +5 -0
  854. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/access/Rakefile +35 -0
  855. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/chains/Rakefile +15 -0
  856. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/comments/Rakefile +18 -0
  857. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/default/Rakefile +17 -0
  858. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/deprecated_import/Rakefile +1 -0
  859. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/dryrun/Rakefile +22 -0
  860. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/extra/Rakefile +1 -0
  861. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/file_creation_task/Rakefile +31 -0
  862. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/imports/Rakefile +19 -0
  863. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/imports/deps.mf +1 -0
  864. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/multidesc/Rakefile +15 -0
  865. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/namespace/Rakefile +64 -0
  866. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/rakelib/test1.rb +4 -0
  867. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/rbext/rakefile.rb +3 -0
  868. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/sample.mf +14 -0
  869. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/statusreturn/Rakefile +6 -0
  870. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/unittest/Rakefile +1 -0
  871. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/verbose/Rakefile +34 -0
  872. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/file_creation.rb +34 -0
  873. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/helper.rb +44 -0
  874. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/in_environment.rb +35 -0
  875. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/reqfile.rb +3 -0
  876. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/reqfile2.rb +3 -0
  877. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/shellcommand.rb +3 -0
  878. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake.rb +38 -0
  879. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_application.rb +364 -0
  880. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_application_options.rb +382 -0
  881. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_clean.rb +12 -0
  882. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_definitions.rb +80 -0
  883. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_directory_task.rb +55 -0
  884. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_dsl.rb +73 -0
  885. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_early_time.rb +31 -0
  886. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_extension.rb +59 -0
  887. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_creation_task.rb +62 -0
  888. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_list.rb +633 -0
  889. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_list_path_map.rb +8 -0
  890. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_task.rb +104 -0
  891. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_utils.rb +252 -0
  892. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_ftp_file.rb +59 -0
  893. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_functional.rb +468 -0
  894. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_invocation_chain.rb +52 -0
  895. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_makefile_loader.rb +23 -0
  896. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_multi_task.rb +51 -0
  897. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_name_space.rb +43 -0
  898. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_package_task.rb +78 -0
  899. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_path_map.rb +157 -0
  900. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_path_map_explode.rb +31 -0
  901. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_path_map_partial.rb +18 -0
  902. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_pseudo_status.rb +20 -0
  903. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_rdoc_task.rb +81 -0
  904. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_require.rb +35 -0
  905. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_rules.rb +346 -0
  906. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task.rb +271 -0
  907. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_argument_parsing.rb +116 -0
  908. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_arguments.rb +86 -0
  909. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_lib.rb +9 -0
  910. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_manager.rb +145 -0
  911. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_manager_argument_resolution.rb +36 -0
  912. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_with_arguments.rb +162 -0
  913. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_test_task.rb +122 -0
  914. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_top_level_functions.rb +76 -0
  915. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_win32.rb +83 -0
  916. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_sys.rb +20 -0
  917. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/BLURB +111 -0
  918. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/LICENSE +53 -0
  919. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/Rakefile +103 -0
  920. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/THANKS +110 -0
  921. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/bin/rcov +522 -0
  922. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/editor-extensions/rcov.el +131 -0
  923. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/editor-extensions/rcov.vim +38 -0
  924. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.8/callsite.c +216 -0
  925. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.8/rcovrt.c +294 -0
  926. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/callsite.c +234 -0
  927. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/rcovrt.c +264 -0
  928. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/Makefile +157 -0
  929. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/callsite.o +0 -0
  930. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/extconf.rb +21 -0
  931. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/rcovrt.o +0 -0
  932. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/rcovrt.so +0 -0
  933. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov.rb +33 -0
  934. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/call_site_analyzer.rb +225 -0
  935. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/code_coverage_analyzer.rb +271 -0
  936. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/coverage_info.rb +36 -0
  937. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/differential_analyzer.rb +116 -0
  938. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/file_statistics.rb +355 -0
  939. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters.rb +13 -0
  940. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/base_formatter.rb +174 -0
  941. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/failure_report.rb +15 -0
  942. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/full_text_report.rb +48 -0
  943. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_coverage.rb +274 -0
  944. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_erb_template.rb +62 -0
  945. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_coverage_diff.rb +193 -0
  946. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_report.rb +32 -0
  947. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_summary.rb +11 -0
  948. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/lowlevel.rb +146 -0
  949. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/rcovtask.rb +156 -0
  950. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/detail.html.erb +64 -0
  951. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/index.html.erb +93 -0
  952. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery-1.3.2.min.js +19 -0
  953. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery.tablesorter.min.js +15 -0
  954. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/print.css +12 -0
  955. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/rcov.js +42 -0
  956. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/screen.css +270 -0
  957. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/version.rb +10 -0
  958. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcovrt.so +0 -0
  959. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/setup.rb +1588 -0
  960. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_01.rb +7 -0
  961. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_02.rb +5 -0
  962. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_03.rb +20 -0
  963. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_04.rb +10 -0
  964. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-new.rb +17 -0
  965. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-old.rb +13 -0
  966. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05.rb +17 -0
  967. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_06.rb +8 -0
  968. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/call_site_analyzer_test.rb +171 -0
  969. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/code_coverage_analyzer_test.rb +220 -0
  970. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-all.out +7 -0
  971. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-diff.out +11 -0
  972. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-original.out +5 -0
  973. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-no-color.out +12 -0
  974. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff.out +12 -0
  975. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/gcc-text.out +10 -0
  976. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.html +651 -0
  977. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.rb +28 -0
  978. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_04_rb.html +641 -0
  979. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/file_statistics_test.rb +471 -0
  980. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/functional_test.rb +91 -0
  981. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/test_helper.rb +4 -0
  982. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/turn_off_rcovrt.rb +4 -0
  983. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.gitignore +9 -0
  984. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec +1 -0
  985. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml +7 -0
  986. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts +2 -0
  987. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md +533 -0
  988. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile +4 -0
  989. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE +20 -0
  990. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md +39 -0
  991. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile +40 -0
  992. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon.rb +14 -0
  993. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb +161 -0
  994. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/hash.rb +70 -0
  995. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb +14 -0
  996. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb +51 -0
  997. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/time.rb +22 -0
  998. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb +6 -0
  999. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb +83 -0
  1000. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb +42 -0
  1001. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap.rb +24 -0
  1002. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb +59 -0
  1003. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/request.rb +61 -0
  1004. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb +85 -0
  1005. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/xml.rb +184 -0
  1006. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/version.rb +5 -0
  1007. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/document.rb +112 -0
  1008. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb +96 -0
  1009. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/request.rb +35 -0
  1010. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsse.rb +156 -0
  1011. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/savon.gemspec +30 -0
  1012. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/gzip/message.gz +0 -0
  1013. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/another_soap_fault.xml +14 -0
  1014. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/authentication.xml +14 -0
  1015. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/header.xml +13 -0
  1016. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/list.xml +18 -0
  1017. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/multi_ref.xml +39 -0
  1018. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault.xml +8 -0
  1019. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault12.xml +18 -0
  1020. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/authentication.xml +63 -0
  1021. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/geotrust.xml +156 -0
  1022. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/namespaced_actions.xml +307 -0
  1023. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/no_namespace.xml +115 -0
  1024. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/soap12.xml +11 -0
  1025. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/two_bindings.xml +25 -0
  1026. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/client_spec.rb +354 -0
  1027. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/hash_spec.rb +121 -0
  1028. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/object_spec.rb +19 -0
  1029. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/string_spec.rb +57 -0
  1030. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/time_spec.rb +13 -0
  1031. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/http/error_spec.rb +52 -0
  1032. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/savon_spec.rb +85 -0
  1033. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/fault_spec.rb +89 -0
  1034. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/request_spec.rb +45 -0
  1035. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/response_spec.rb +181 -0
  1036. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/xml_spec.rb +341 -0
  1037. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap_spec.rb +21 -0
  1038. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/document_spec.rb +132 -0
  1039. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/parser_spec.rb +107 -0
  1040. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/request_spec.rb +15 -0
  1041. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsse_spec.rb +232 -0
  1042. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/spec_helper.rb +14 -0
  1043. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/endpoint.rb +25 -0
  1044. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/fixture.rb +37 -0
  1045. data/search_biomodel/ruby/1.8/specifications/builder-3.0.0.gemspec +36 -0
  1046. data/search_biomodel/ruby/1.8/specifications/git-1.2.5.gemspec +30 -0
  1047. data/search_biomodel/ruby/1.8/specifications/gyoku-0.4.4.gemspec +41 -0
  1048. data/search_biomodel/ruby/1.8/specifications/httpi-0.9.4.gemspec +49 -0
  1049. data/search_biomodel/ruby/1.8/specifications/jeweler-1.6.2.gemspec +79 -0
  1050. data/search_biomodel/ruby/1.8/specifications/nokogiri-1.4.6.gemspec +53 -0
  1051. data/search_biomodel/ruby/1.8/specifications/nori-1.0.1.gemspec +38 -0
  1052. data/search_biomodel/ruby/1.8/specifications/pyu-ntlm-http-0.1.3.1.gemspec +31 -0
  1053. data/search_biomodel/ruby/1.8/specifications/rack-1.3.0.gemspec +57 -0
  1054. data/search_biomodel/ruby/1.8/specifications/rake-0.9.2.gemspec +43 -0
  1055. data/search_biomodel/ruby/1.8/specifications/rcov-0.9.9.gemspec +34 -0
  1056. data/search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec +55 -0
  1057. data/test/test_search_biomodel.rb +29 -4
  1058. metadata +1071 -36
  1059. data/test.rb +0 -1
@@ -0,0 +1,131 @@
1
+ ;;; rcov.el -- Ruby Coverage Analysis Tool
2
+
3
+ ;;; Copyright (c) 2006 rubikitch <rubikitch@ruby-lang.org>
4
+ ;;;
5
+ ;;; Use and distribution subject to the terms of the rcov license.
6
+
7
+ (defvar rcov-xref-before-visit-source-hook nil
8
+ "Hook executed before jump.")
9
+ (defvar rcov-xref-after-visit-source-hook nil
10
+ "Hook executed after jump.")
11
+ (defvar rcov-command-line "rake rcov RCOVOPTS='--gcc --no-html'"
12
+ "Rcov command line to find uncovered code.
13
+ It is good to use rcov with Rake because it `cd's appropriate directory.
14
+ `--gcc' option is strongly recommended because `rcov' uses compilation-mode.")
15
+ (defvar rcovsave-command-line "rake rcov RCOVOPTS='--gcc --no-html --save=coverage.info'"
16
+ "Rcov command line to save coverage status. See also `rcov-command-line'.")
17
+ (defvar rcovdiff-command-line "rake rcov RCOVOPTS='-D --gcc --no-html'"
18
+ "Rcov command line to find new uncovered code. See also `rcov-command-line'.")
19
+
20
+ ;;;; rcov-xref-mode
21
+ (define-derived-mode rcov-xref-mode ruby-mode "Rxref"
22
+ "Major mode for annotated Ruby scripts (coverage/*.rb) by rcov."
23
+ (setq truncate-lines t)
24
+ ;; ruby-electric-mode / pabbrev-mode hijacks TAB binding.
25
+ (and ruby-electric-mode (ruby-electric-mode -1))
26
+ (and (boundp 'pabbrev-mode) pabbrev-mode (pabbrev-mode -1))
27
+ (suppress-keymap rcov-xref-mode-map)
28
+ (define-key rcov-xref-mode-map "\C-i" 'rcov-xref-next-tag)
29
+ (define-key rcov-xref-mode-map "\M-\C-i" 'rcov-xref-previous-tag)
30
+ (define-key rcov-xref-mode-map "\C-m" 'rcov-xref-visit-source)
31
+ (set (make-local-variable 'automatic-hscrolling) nil)
32
+ )
33
+
34
+ (defvar rcov-xref-tag-regexp "\\[\\[\\(.*?\\)\\]\\]")
35
+
36
+ (defun rcov-xref-next-tag (n)
37
+ "Go to next LINK."
38
+ (interactive "p")
39
+ (when (looking-at rcov-xref-tag-regexp)
40
+ (goto-char (match-end 0)))
41
+ (when (re-search-forward rcov-xref-tag-regexp nil t n)
42
+ (goto-char (match-beginning 0)))
43
+ (rcov-xref-show-link))
44
+
45
+ (defun rcov-xref-previous-tag (n)
46
+ "Go to previous LINK."
47
+ (interactive "p")
48
+ (re-search-backward rcov-xref-tag-regexp nil t n)
49
+ (rcov-xref-show-link))
50
+
51
+ (defvar rcov-xref-link-tempbuffer " *rcov-link*")
52
+ (defun rcov-xref-show-link ()
53
+ "Follow current LINK."
54
+ (let ((link (match-string 1))
55
+ (eol (point-at-eol)))
56
+ (save-excursion
57
+ (when (and link
58
+ (re-search-backward "# \\(>>\\|<<\\) " (point-at-bol) t))
59
+ (while (re-search-forward rcov-xref-tag-regexp eol t)
60
+ (let ((matched (match-string 1)))
61
+ (when (string= link matched)
62
+ (add-text-properties 0 (length matched) '(face highlight) matched))
63
+ (with-current-buffer (get-buffer-create rcov-xref-link-tempbuffer)
64
+ (insert matched "\n"))))
65
+ (let (message-log-max) ; inhibit *Messages*
66
+ (message "%s" (with-current-buffer rcov-xref-link-tempbuffer
67
+ (substring (buffer-string) 0 -1)))) ; chomp
68
+ (kill-buffer rcov-xref-link-tempbuffer)))))
69
+
70
+
71
+ ;; copied from jw-visit-source
72
+ (defun rcov-xref-extract-file-lines (line)
73
+ "Extract a list of file/line pairs from the given line of text."
74
+ (let*
75
+ ((unix_fn "[^ \t\n\r\"'([<{]+")
76
+ (dos_fn "[a-zA-Z]:[^ \t\n\r\"'([<{]+")
77
+ (flre (concat "\\(" unix_fn "\\|" dos_fn "\\):\\([0-9]+\\)"))
78
+ (start nil)
79
+ (result nil))
80
+ (while (string-match flre line start)
81
+ (setq start (match-end 0))
82
+ (setq result
83
+ (cons (list
84
+ (substring line (match-beginning 1) (match-end 1))
85
+ (string-to-int (substring line (match-beginning 2) (match-end 2))))
86
+ result)))
87
+ result))
88
+
89
+ (defun rcov-xref-select-file-line (candidates)
90
+ "Select a file/line candidate that references an existing file."
91
+ (cond ((null candidates) nil)
92
+ ((file-readable-p (caar candidates)) (car candidates))
93
+ (t (rcov-xref-select-file-line (cdr candidates))) ))
94
+
95
+ (defun rcov-xref-visit-source ()
96
+ "If the current line contains text like '../src/program.rb:34', visit
97
+ that file in the other window and position point on that line."
98
+ (interactive)
99
+ (let* ((line (progn (looking-at rcov-xref-tag-regexp) (match-string 1)))
100
+ (candidates (rcov-xref-extract-file-lines line))
101
+ (file-line (rcov-xref-select-file-line candidates)))
102
+ (cond (file-line
103
+ (run-hooks 'rcov-xref-before-visit-source-hook)
104
+ (find-file (car file-line))
105
+ (goto-line (cadr file-line))
106
+ (run-hooks 'rcov-xref-after-visit-source-hook))
107
+ (t
108
+ (error "No source location on line.")) )))
109
+
110
+ ;;;; Running rcov with various options.
111
+ (defun rcov-internal (cmdline)
112
+ "Run rcov with various options."
113
+ (compile-internal cmdline ""
114
+ nil nil nil (lambda (x) "*rcov*")))
115
+
116
+ (defun rcov ()
117
+ "Run rcov to find uncovered code."
118
+ (interactive)
119
+ (rcov-internal rcov-command-line))
120
+
121
+ (defun rcovsave ()
122
+ "Run rcov to save coverage status."
123
+ (interactive)
124
+ (rcov-internal rcovsave-command-line))
125
+
126
+ (defun rcovdiff ()
127
+ "Run rcov to find new uncovered code."
128
+ (interactive)
129
+ (rcov-internal rcovdiff-command-line))
130
+
131
+ (provide 'rcov)
@@ -0,0 +1,38 @@
1
+ " Vim compiler file
2
+ " Language: Ruby
3
+ " Function: Code coverage information with rcov
4
+ " Maintainer: Mauricio Fernandez <mfp at acm dot org>
5
+ " Info:
6
+ " URL: http://eigenclass.org/hiki.rb?rcov
7
+ " ----------------------------------------------------------------------------
8
+ "
9
+ " Changelog:
10
+ " 0.1: initial version, shipped with rcov 0.6.0
11
+ "
12
+ " Comments:
13
+ " Initial attempt.
14
+ " ----------------------------------------------------------------------------
15
+
16
+ if exists("current_compiler")
17
+ finish
18
+ endif
19
+ let current_compiler = "rcov"
20
+
21
+ if exists(":CompilerSet") != 2 " older Vim always used :setlocal
22
+ command -nargs=* CompilerSet setlocal <args>
23
+ endif
24
+
25
+ let s:cpo_save = &cpo
26
+ set cpo-=C
27
+
28
+ CompilerSet makeprg=rake\ $*\ RCOVOPTS=\"-D\ --no-html\ --no-color\"\ $*
29
+
30
+ CompilerSet errorformat=
31
+ \%+W\#\#\#\ %f:%l\,
32
+ \%-C\ \ \ ,
33
+ \%-C!!\
34
+
35
+ let &cpo = s:cpo_save
36
+ unlet s:cpo_save
37
+
38
+ " vim: nowrap sw=2 sts=2 ts=8 ff=unix :
@@ -0,0 +1,216 @@
1
+ #include <ruby.h>
2
+ #include <env.h>
3
+ #include <node.h>
4
+ #include <st.h>
5
+ #include <stdlib.h>
6
+
7
+ static char callsite_hook_set_p;
8
+
9
+ typedef struct {
10
+ char *sourcefile;
11
+ unsigned int sourceline;
12
+ VALUE curr_meth;
13
+ } type_def_site;
14
+
15
+ static VALUE caller_info = 0;
16
+ static VALUE method_def_site_info = 0;
17
+
18
+ static caller_stack_len = 1;
19
+
20
+ static VALUE record_callsite_info(VALUE args) {
21
+ VALUE caller_ary;
22
+ VALUE curr_meth;
23
+ VALUE count_hash;
24
+ VALUE count;
25
+ VALUE *pargs = (VALUE *)args;
26
+
27
+ caller_ary = pargs[0];
28
+ curr_meth = pargs[1];
29
+ count_hash = rb_hash_aref(caller_info, curr_meth);
30
+
31
+ if(TYPE(count_hash) != T_HASH) {
32
+ /* Qnil, anything else should be impossible unless somebody's been
33
+ * messing with ObjectSpace */
34
+ count_hash = rb_hash_new();
35
+ rb_hash_aset(caller_info, curr_meth, count_hash);
36
+ }
37
+
38
+ count = rb_hash_aref(count_hash, caller_ary);
39
+
40
+ if(count == Qnil)
41
+ count = INT2FIX(0);
42
+
43
+ count = INT2FIX(FIX2UINT(count) + 1);
44
+ rb_hash_aset(count_hash, caller_ary, count);
45
+ /*
46
+ printf("CALLSITE: %s -> %s %d\n", RSTRING(rb_inspect(curr_meth))->ptr,
47
+ RSTRING(rb_inspect(caller_ary))->ptr, FIX2INT(count));
48
+ */
49
+
50
+ return Qnil;
51
+ }
52
+
53
+ static VALUE record_method_def_site(VALUE args) {
54
+ type_def_site *pargs = (type_def_site *)args;
55
+ VALUE def_site_info;
56
+ VALUE hash;
57
+
58
+ if(RTEST(rb_hash_aref(method_def_site_info, pargs->curr_meth)))
59
+ return Qnil;
60
+ def_site_info = rb_ary_new();
61
+ rb_ary_push(def_site_info, rb_str_new2(pargs->sourcefile));
62
+ rb_ary_push(def_site_info, INT2NUM(pargs->sourceline+1));
63
+ rb_hash_aset(method_def_site_info, pargs->curr_meth, def_site_info);
64
+ /*
65
+ printf("DEFSITE: %s:%d for %s\n", pargs->sourcefile, pargs->sourceline+1,
66
+ RSTRING(rb_inspect(pargs->curr_meth))->ptr);
67
+ */
68
+
69
+ return Qnil;
70
+ }
71
+
72
+ static VALUE callsite_custom_backtrace(int lev) {
73
+ struct FRAME *frame = ruby_frame;
74
+ VALUE ary;
75
+ NODE *n;
76
+ VALUE level;
77
+ VALUE klass;
78
+
79
+ ary = rb_ary_new();
80
+
81
+ if (frame->last_func == ID_ALLOCATOR) {
82
+ frame = frame->prev;
83
+ }
84
+
85
+ for (; frame && (n = frame->node); frame = frame->prev) {
86
+ if (frame->prev && frame->prev->last_func) {
87
+ if (frame->prev->node == n) continue;
88
+ level = rb_ary_new();
89
+ klass = frame->prev->last_class ? frame->prev->last_class : Qnil;
90
+ if(TYPE(klass) == T_ICLASS) {
91
+ klass = CLASS_OF(klass);
92
+ }
93
+ rb_ary_push(level, klass);
94
+ rb_ary_push(level, ID2SYM(frame->prev->last_func));
95
+ rb_ary_push(level, rb_str_new2(n->nd_file));
96
+ rb_ary_push(level, INT2NUM(nd_line(n)));
97
+ }
98
+ else {
99
+ level = rb_ary_new();
100
+ rb_ary_push(level, Qnil);
101
+ rb_ary_push(level, Qnil);
102
+ rb_ary_push(level, rb_str_new2(n->nd_file));
103
+ rb_ary_push(level, INT2NUM(nd_line(n)));
104
+ }
105
+ rb_ary_push(ary, level);
106
+ if(--lev == 0)
107
+ break;
108
+ }
109
+
110
+ return ary;
111
+ }
112
+
113
+ static void coverage_event_callsite_hook(rb_event_t event, NODE *node, VALUE self, ID mid, VALUE klass) {
114
+ VALUE caller_ary;
115
+ VALUE curr_meth;
116
+ VALUE args[2];
117
+ int status;
118
+
119
+ caller_ary = callsite_custom_backtrace(caller_stack_len);
120
+
121
+ if(TYPE(klass) == T_ICLASS) {
122
+ klass = CLASS_OF(klass);
123
+ }
124
+
125
+ curr_meth = rb_ary_new();
126
+ rb_ary_push(curr_meth, klass);
127
+ rb_ary_push(curr_meth, ID2SYM(mid));
128
+
129
+ args[0] = caller_ary;
130
+ args[1] = curr_meth;
131
+ rb_protect(record_callsite_info, (VALUE)args, &status);
132
+
133
+ if(!status && node) {
134
+ type_def_site args;
135
+
136
+ args.sourcefile = node->nd_file;
137
+ args.sourceline = nd_line(node) - 1;
138
+ args.curr_meth = curr_meth;
139
+ rb_protect(record_method_def_site, (VALUE)&args, NULL);
140
+ }
141
+
142
+ if(status)
143
+ rb_gv_set("$!", Qnil);
144
+ }
145
+
146
+ static VALUE cov_install_callsite_hook(VALUE self) {
147
+ if(!callsite_hook_set_p) {
148
+ if(TYPE(caller_info) != T_HASH)
149
+ caller_info = rb_hash_new();
150
+ callsite_hook_set_p = 1;
151
+ rb_add_event_hook(coverage_event_callsite_hook, RUBY_EVENT_CALL);
152
+
153
+ return Qtrue;
154
+ }
155
+ else
156
+ return Qfalse;
157
+ }
158
+
159
+ static VALUE cov_remove_callsite_hook(VALUE self) {
160
+ if(!callsite_hook_set_p)
161
+ return Qfalse;
162
+ else {
163
+ rb_remove_event_hook(coverage_event_callsite_hook);
164
+ callsite_hook_set_p = 0;
165
+ return Qtrue;
166
+ }
167
+ }
168
+
169
+ static VALUE cov_generate_callsite_info(VALUE self) {
170
+ VALUE ret;
171
+
172
+ ret = rb_ary_new();
173
+ rb_ary_push(ret, caller_info);
174
+ rb_ary_push(ret, method_def_site_info);
175
+ return ret;
176
+ }
177
+
178
+ static VALUE cov_reset_callsite(VALUE self) {
179
+ if(callsite_hook_set_p) {
180
+ rb_raise(rb_eRuntimeError, "Cannot reset the callsite info in the middle of a traced run.");
181
+ return Qnil;
182
+ }
183
+
184
+ caller_info = rb_hash_new();
185
+ method_def_site_info = rb_hash_new();
186
+ return Qnil;
187
+ }
188
+
189
+ void Init_rcov_callsite() {
190
+ VALUE mRcov;
191
+ VALUE mRCOV__;
192
+ ID id_rcov = rb_intern("Rcov");
193
+ ID id_coverage__ = rb_intern("RCOV__");
194
+ ID id_script_lines__ = rb_intern("SCRIPT_LINES__");
195
+
196
+ if(rb_const_defined(rb_cObject, id_rcov))
197
+ mRcov = rb_const_get(rb_cObject, id_rcov);
198
+ else
199
+ mRcov = rb_define_module("Rcov");
200
+
201
+ if(rb_const_defined(mRcov, id_coverage__))
202
+ mRCOV__ = rb_const_get_at(mRcov, id_coverage__);
203
+ else
204
+ mRCOV__ = rb_define_module_under(mRcov, "RCOV__");
205
+
206
+ callsite_hook_set_p = 0;
207
+ caller_info = rb_hash_new();
208
+ method_def_site_info = rb_hash_new();
209
+ rb_gc_register_address(&caller_info);
210
+ rb_gc_register_address(&method_def_site_info);
211
+
212
+ rb_define_singleton_method(mRCOV__, "install_callsite_hook", cov_install_callsite_hook, 0);
213
+ rb_define_singleton_method(mRCOV__, "remove_callsite_hook", cov_remove_callsite_hook, 0);
214
+ rb_define_singleton_method(mRCOV__, "generate_callsite_info", cov_generate_callsite_info, 0);
215
+ rb_define_singleton_method(mRCOV__, "reset_callsite", cov_reset_callsite, 0);
216
+ }
@@ -0,0 +1,294 @@
1
+ #include <ruby.h>
2
+ #include <env.h>
3
+ #include <node.h>
4
+ #include <st.h>
5
+ #include <stdlib.h>
6
+ #include <assert.h>
7
+
8
+ #define COVERAGE_DEBUG_EVENTS 0
9
+
10
+ #define RCOVRT_VERSION_MAJOR 2
11
+ #define RCOVRT_VERSION_MINOR 0
12
+ #define RCOVRT_VERSION_REV 0
13
+
14
+ static VALUE mRcov;
15
+ static VALUE mRCOV__;
16
+ static VALUE oSCRIPT_LINES__;
17
+ static ID id_cover;
18
+ static st_table* coverinfo = 0;
19
+ static char coverage_hook_set_p;
20
+
21
+ struct cov_array {
22
+ unsigned int len;
23
+ unsigned int *ptr;
24
+ };
25
+
26
+ static struct cov_array *cached_array = 0;
27
+ static char *cached_file = 0;
28
+
29
+ static struct cov_array * coverage_increase_counter_uncached(char *sourcefile, unsigned int sourceline, char mark_only) {
30
+ struct cov_array *carray = NULL;
31
+
32
+ if(sourcefile == NULL) {
33
+ /* "can't happen", just ignore and avoid segfault */
34
+ return NULL;
35
+ }
36
+ else if(!st_lookup(coverinfo, (st_data_t)sourcefile, (st_data_t*)&carray)) {
37
+ VALUE arr;
38
+
39
+ arr = rb_hash_aref(oSCRIPT_LINES__, rb_str_new2(sourcefile));
40
+ if(NIL_P(arr))
41
+ return 0;
42
+ rb_check_type(arr, T_ARRAY);
43
+ carray = calloc(1, sizeof(struct cov_array));
44
+ carray->ptr = calloc(RARRAY(arr)->len, sizeof(unsigned int));
45
+ carray->len = RARRAY(arr)->len;
46
+ st_insert(coverinfo, (st_data_t)strdup(sourcefile), (st_data_t) carray);
47
+ }
48
+ else {
49
+ /* recovered carray, sanity check */
50
+ assert(carray && "failed to create valid carray");
51
+ }
52
+
53
+ if(mark_only) {
54
+ if (carray && carray->len > sourceline) {
55
+ if(!carray->ptr[sourceline])
56
+ carray->ptr[sourceline] = 1;
57
+ } else {
58
+ #if COVERAGE_DEBUG_EVENTS
59
+ printf("DEBUG: %s carray->len:%d sourceline:%d\n",
60
+ sourcefile, carray->len, sourceline);
61
+ #endif
62
+ }
63
+ } else {
64
+ if (carray && carray->len > sourceline) {
65
+ carray->ptr[sourceline]++;
66
+ }
67
+ }
68
+
69
+ return carray;
70
+ }
71
+
72
+ static void coverage_mark_caller() {
73
+ struct FRAME *frame = ruby_frame;
74
+ NODE *n;
75
+
76
+ if (frame->last_func == ID_ALLOCATOR) {
77
+ frame = frame->prev;
78
+ }
79
+ for (; frame && (n = frame->node); frame = frame->prev) {
80
+ if (frame->prev && frame->prev->last_func) {
81
+ if (frame->prev->node == n) {
82
+ if (frame->prev->last_func == frame->last_func) continue;
83
+ }
84
+ coverage_increase_counter_uncached(n->nd_file, nd_line(n) - 1, 1);
85
+ }
86
+ else {
87
+ coverage_increase_counter_uncached(n->nd_file, nd_line(n) - 1, 1);
88
+ }
89
+ break;
90
+ }
91
+ }
92
+
93
+ static void coverage_increase_counter_cached(char *sourcefile, int sourceline) {
94
+ if(cached_file == sourcefile && cached_array && cached_array->len > sourceline) {
95
+ cached_array->ptr[sourceline]++;
96
+ return;
97
+ }
98
+ cached_file = sourcefile;
99
+ cached_array = coverage_increase_counter_uncached(sourcefile, sourceline, 0);
100
+ }
101
+
102
+ static void coverage_event_coverage_hook(rb_event_t event, NODE *node, VALUE self, ID mid, VALUE klass) {
103
+ char *sourcefile;
104
+ unsigned int sourceline;
105
+ static unsigned int in_hook = 0;
106
+
107
+ if(in_hook) {
108
+ return;
109
+ }
110
+
111
+ in_hook++;
112
+
113
+ #if COVERAGE_DEBUG_EVENTS
114
+ do {
115
+ int status;
116
+ VALUE old_exception;
117
+ old_exception = rb_gv_get("$!");
118
+ rb_protect(rb_inspect, klass, &status);
119
+ if(!status) {
120
+ printf("EVENT: %d %s %s %s %d\n", event,
121
+ klass ? RSTRING(rb_inspect(klass))->ptr : "",
122
+ mid ? (mid == ID_ALLOCATOR ? "ID_ALLOCATOR" : rb_id2name(mid))
123
+ : "unknown",
124
+ node ? node->nd_file : "", node ? nd_line(node) : 0);
125
+ }
126
+ else {
127
+ printf("EVENT: %d %s %s %d\n", event,
128
+ mid ? (mid == ID_ALLOCATOR ? "ID_ALLOCATOR" : rb_id2name(mid))
129
+ : "unknown",
130
+ node ? node->nd_file : "", node ? nd_line(node) : 0);
131
+ }
132
+
133
+ rb_gv_set("$!", old_exception);
134
+ } while (0);
135
+ #endif
136
+
137
+ if(event & RUBY_EVENT_C_CALL) {
138
+ coverage_mark_caller();
139
+ }
140
+
141
+ if(event & (RUBY_EVENT_C_CALL | RUBY_EVENT_C_RETURN | RUBY_EVENT_CLASS)) {
142
+ in_hook--;
143
+ return;
144
+ }
145
+
146
+ if(node == NULL) {
147
+ in_hook--;
148
+ return;
149
+ }
150
+
151
+ sourcefile = node->nd_file;
152
+ sourceline = nd_line(node) - 1;
153
+
154
+ coverage_increase_counter_cached(sourcefile, sourceline);
155
+
156
+ if(event & RUBY_EVENT_CALL)
157
+ coverage_mark_caller();
158
+ in_hook--;
159
+ }
160
+
161
+ static VALUE cov_install_coverage_hook(VALUE self) {
162
+ if(!coverage_hook_set_p) {
163
+ if(!coverinfo)
164
+ coverinfo = st_init_strtable();
165
+ coverage_hook_set_p = 1;
166
+ /* TODO: allow C_CALL too, since it's supported already
167
+ * the overhead is around ~30%, tested on typo */
168
+ rb_add_event_hook(coverage_event_coverage_hook, RUBY_EVENT_ALL & ~RUBY_EVENT_C_CALL & ~RUBY_EVENT_C_RETURN & ~RUBY_EVENT_CLASS);
169
+
170
+ return Qtrue;
171
+ }
172
+ else
173
+ return Qfalse;
174
+ }
175
+
176
+ static int populate_cover(st_data_t key, st_data_t value, st_data_t cover) {
177
+ VALUE rcover;
178
+ VALUE rkey;
179
+ VALUE rval;
180
+ struct cov_array *carray;
181
+ unsigned int i;
182
+
183
+ rcover = (VALUE)cover;
184
+ carray = (struct cov_array *) value;
185
+ rkey = rb_str_new2((char*) key);
186
+ rval = rb_ary_new2(carray->len);
187
+
188
+ for(i = 0; i < carray->len; i++)
189
+ RARRAY(rval)->ptr[i] = UINT2NUM(carray->ptr[i]);
190
+
191
+ RARRAY(rval)->len = carray->len;
192
+ rb_hash_aset(rcover, rkey, rval);
193
+
194
+ return ST_CONTINUE;
195
+ }
196
+
197
+ static int free_table(st_data_t key, st_data_t value, st_data_t ignored) {
198
+ struct cov_array *carray;
199
+
200
+ carray = (struct cov_array *) value;
201
+ free((char *)key);
202
+ free(carray->ptr);
203
+ free(carray);
204
+
205
+ return ST_CONTINUE;
206
+ }
207
+
208
+ static VALUE cov_remove_coverage_hook(VALUE self) {
209
+ if(!coverage_hook_set_p)
210
+ return Qfalse;
211
+ else {
212
+ rb_remove_event_hook(coverage_event_coverage_hook);
213
+ coverage_hook_set_p = 0;
214
+ return Qtrue;
215
+ }
216
+ }
217
+
218
+ static VALUE cov_generate_coverage_info(VALUE self) {
219
+ VALUE cover;
220
+
221
+ if(rb_const_defined_at(mRCOV__, id_cover)) {
222
+ rb_mod_remove_const(mRCOV__, ID2SYM(id_cover));
223
+ }
224
+
225
+ cover = rb_hash_new();
226
+
227
+ if(coverinfo)
228
+ st_foreach(coverinfo, populate_cover, cover);
229
+
230
+ rb_define_const(mRCOV__, "COVER", cover);
231
+
232
+ return cover;
233
+ }
234
+
235
+ static VALUE cov_reset_coverage(VALUE self) {
236
+ if(coverage_hook_set_p) {
237
+ rb_raise(rb_eRuntimeError, "Cannot reset the coverage info in the middle of a traced run.");
238
+ return Qnil;
239
+ }
240
+
241
+ cached_array = 0;
242
+ cached_file = 0;
243
+ st_foreach(coverinfo, free_table, Qnil);
244
+ st_free_table(coverinfo);
245
+ coverinfo = 0;
246
+
247
+ return Qnil;
248
+ }
249
+
250
+ static VALUE cov_ABI(VALUE self) {
251
+ VALUE ret;
252
+
253
+ ret = rb_ary_new();
254
+ rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_MAJOR));
255
+ rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_MINOR));
256
+ rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_REV));
257
+
258
+ return ret;
259
+ }
260
+
261
+ void Init_rcovrt() {
262
+ ID id_rcov = rb_intern("Rcov");
263
+ ID id_coverage__ = rb_intern("RCOV__");
264
+ ID id_script_lines__ = rb_intern("SCRIPT_LINES__");
265
+
266
+ id_cover = rb_intern("COVER");
267
+
268
+ if(rb_const_defined(rb_cObject, id_rcov))
269
+ mRcov = rb_const_get(rb_cObject, id_rcov);
270
+ else
271
+ mRcov = rb_define_module("Rcov");
272
+
273
+ if(rb_const_defined(mRcov, id_coverage__))
274
+ mRCOV__ = rb_const_get_at(mRcov, id_coverage__);
275
+ else
276
+ mRCOV__ = rb_define_module_under(mRcov, "RCOV__");
277
+
278
+ if(rb_const_defined(rb_cObject, id_script_lines__))
279
+ oSCRIPT_LINES__ = rb_const_get(rb_cObject, rb_intern("SCRIPT_LINES__"));
280
+ else {
281
+ oSCRIPT_LINES__ = rb_hash_new();
282
+ rb_const_set(rb_cObject, id_script_lines__, oSCRIPT_LINES__);
283
+ }
284
+
285
+ coverage_hook_set_p = 0;
286
+
287
+ rb_define_singleton_method(mRCOV__, "install_coverage_hook", cov_install_coverage_hook, 0);
288
+ rb_define_singleton_method(mRCOV__, "remove_coverage_hook", cov_remove_coverage_hook, 0);
289
+ rb_define_singleton_method(mRCOV__, "generate_coverage_info", cov_generate_coverage_info, 0);
290
+ rb_define_singleton_method(mRCOV__, "reset_coverage", cov_reset_coverage, 0);
291
+ rb_define_singleton_method(mRCOV__, "ABI", cov_ABI, 0);
292
+
293
+ Init_rcov_callsite();
294
+ }