search_biomodel 0.1.2 → 1.0.0
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- data/Gemfile +1 -2
- data/Gemfile.lock +17 -3
- data/README.rdoc +9 -2
- data/VERSION +1 -1
- data/lib/search_biomodel.rb +11 -8
- data/search_biomodel.gemspec +1055 -9
- data/search_biomodel/ruby/1.8/bin/jeweler +19 -0
- data/search_biomodel/ruby/1.8/bin/nokogiri +19 -0
- data/search_biomodel/ruby/1.8/bin/rackup +19 -0
- data/search_biomodel/ruby/1.8/bin/rake +19 -0
- data/search_biomodel/ruby/1.8/bin/rcov +19 -0
- data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +89 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +229 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +232 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +296 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +55364 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +109 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +23 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +197 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +160 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +63 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +334 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +40 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +225 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +150 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +546 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +77 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +240 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +156 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +479 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +104 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +48 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +146 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +719 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +273 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +40 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +44 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +110 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +55 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +2 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +81 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +11 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +26 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +23 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +45 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +63 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +53 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +160 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +77 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +49 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +46 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +2 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +5 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +60 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +8 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +223 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +18 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +28 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +198 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +67 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +98 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +81 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +91 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +56 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +90 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +16 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +15 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +10 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +232 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +164 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +142 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +128 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +284 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +135 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +95 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +166 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +22 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +59 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +216 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +81 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +103 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +86 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +13 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +71 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +102 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +158 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +54 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +149 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +70 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +382 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +31 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +49 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +244 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler.rb +177 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +36 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +50 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +31 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +82 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +59 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +30 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +87 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +287 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +61 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +43 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +29 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +41 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +162 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +44 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +95 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +38 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +38 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +110 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +224 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +48 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +19 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Rakefile +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/flunking.rb +7 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/helper.rb +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bundler_setup.erb +10 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/default.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/support/env.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/jeweler_tasks.erb +31 -0
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- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/version.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcovrt.so +0 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/setup.rb +1588 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_01.rb +7 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_02.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_03.rb +20 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_04.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-new.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-old.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_06.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/call_site_analyzer_test.rb +171 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/code_coverage_analyzer_test.rb +220 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-all.out +7 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-diff.out +11 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-original.out +5 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-no-color.out +12 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff.out +12 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/gcc-text.out +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.html +651 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_04_rb.html +641 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/file_statistics_test.rb +471 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/functional_test.rb +91 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/test_helper.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/turn_off_rcovrt.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts +2 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md +533 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile +4 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md +39 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile +40 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb +161 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/hash.rb +70 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb +51 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/time.rb +22 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb +83 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap.rb +24 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb +59 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/request.rb +61 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/xml.rb +184 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/document.rb +112 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb +96 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/request.rb +35 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsse.rb +156 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/savon.gemspec +30 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/gzip/message.gz +0 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/another_soap_fault.xml +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/authentication.xml +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/header.xml +13 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/list.xml +18 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/multi_ref.xml +39 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault.xml +8 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault12.xml +18 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/authentication.xml +63 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/geotrust.xml +156 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/namespaced_actions.xml +307 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/no_namespace.xml +115 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/soap12.xml +11 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/two_bindings.xml +25 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/client_spec.rb +354 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/hash_spec.rb +121 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/object_spec.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/string_spec.rb +57 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/time_spec.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/http/error_spec.rb +52 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/savon_spec.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/fault_spec.rb +89 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/request_spec.rb +45 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/response_spec.rb +181 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/xml_spec.rb +341 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap_spec.rb +21 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/document_spec.rb +132 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/parser_spec.rb +107 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/request_spec.rb +15 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsse_spec.rb +232 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/spec_helper.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/endpoint.rb +25 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/fixture.rb +37 -0
- data/search_biomodel/ruby/1.8/specifications/builder-3.0.0.gemspec +36 -0
- data/search_biomodel/ruby/1.8/specifications/git-1.2.5.gemspec +30 -0
- data/search_biomodel/ruby/1.8/specifications/gyoku-0.4.4.gemspec +41 -0
- data/search_biomodel/ruby/1.8/specifications/httpi-0.9.4.gemspec +49 -0
- data/search_biomodel/ruby/1.8/specifications/jeweler-1.6.2.gemspec +79 -0
- data/search_biomodel/ruby/1.8/specifications/nokogiri-1.4.6.gemspec +53 -0
- data/search_biomodel/ruby/1.8/specifications/nori-1.0.1.gemspec +38 -0
- data/search_biomodel/ruby/1.8/specifications/pyu-ntlm-http-0.1.3.1.gemspec +31 -0
- data/search_biomodel/ruby/1.8/specifications/rack-1.3.0.gemspec +57 -0
- data/search_biomodel/ruby/1.8/specifications/rake-0.9.2.gemspec +43 -0
- data/search_biomodel/ruby/1.8/specifications/rcov-0.9.9.gemspec +34 -0
- data/search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec +55 -0
- data/test/test_search_biomodel.rb +29 -4
- metadata +1071 -36
- data/test.rb +0 -1
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;;; rcov.el -- Ruby Coverage Analysis Tool
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;;; Copyright (c) 2006 rubikitch <rubikitch@ruby-lang.org>
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;;;
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;;; Use and distribution subject to the terms of the rcov license.
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(defvar rcov-xref-before-visit-source-hook nil
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"Hook executed before jump.")
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(defvar rcov-xref-after-visit-source-hook nil
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"Hook executed after jump.")
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(defvar rcov-command-line "rake rcov RCOVOPTS='--gcc --no-html'"
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"Rcov command line to find uncovered code.
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It is good to use rcov with Rake because it `cd's appropriate directory.
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`--gcc' option is strongly recommended because `rcov' uses compilation-mode.")
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(defvar rcovsave-command-line "rake rcov RCOVOPTS='--gcc --no-html --save=coverage.info'"
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"Rcov command line to save coverage status. See also `rcov-command-line'.")
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(defvar rcovdiff-command-line "rake rcov RCOVOPTS='-D --gcc --no-html'"
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"Rcov command line to find new uncovered code. See also `rcov-command-line'.")
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;;;; rcov-xref-mode
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(define-derived-mode rcov-xref-mode ruby-mode "Rxref"
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"Major mode for annotated Ruby scripts (coverage/*.rb) by rcov."
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(setq truncate-lines t)
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;; ruby-electric-mode / pabbrev-mode hijacks TAB binding.
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(and ruby-electric-mode (ruby-electric-mode -1))
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(and (boundp 'pabbrev-mode) pabbrev-mode (pabbrev-mode -1))
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(suppress-keymap rcov-xref-mode-map)
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(define-key rcov-xref-mode-map "\C-i" 'rcov-xref-next-tag)
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(define-key rcov-xref-mode-map "\M-\C-i" 'rcov-xref-previous-tag)
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(define-key rcov-xref-mode-map "\C-m" 'rcov-xref-visit-source)
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(set (make-local-variable 'automatic-hscrolling) nil)
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)
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(defvar rcov-xref-tag-regexp "\\[\\[\\(.*?\\)\\]\\]")
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(defun rcov-xref-next-tag (n)
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"Go to next LINK."
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(interactive "p")
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(when (looking-at rcov-xref-tag-regexp)
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(goto-char (match-end 0)))
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(when (re-search-forward rcov-xref-tag-regexp nil t n)
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(goto-char (match-beginning 0)))
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(rcov-xref-show-link))
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(defun rcov-xref-previous-tag (n)
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"Go to previous LINK."
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(interactive "p")
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(re-search-backward rcov-xref-tag-regexp nil t n)
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(rcov-xref-show-link))
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(defvar rcov-xref-link-tempbuffer " *rcov-link*")
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"Follow current LINK."
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(let ((link (match-string 1))
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(eol (point-at-eol)))
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(save-excursion
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(when (and link
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(re-search-backward "# \\(>>\\|<<\\) " (point-at-bol) t))
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(let ((matched (match-string 1)))
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(when (string= link matched)
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(add-text-properties 0 (length matched) '(face highlight) matched))
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(with-current-buffer (get-buffer-create rcov-xref-link-tempbuffer)
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(insert matched "\n"))))
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(let (message-log-max) ; inhibit *Messages*
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(message "%s" (with-current-buffer rcov-xref-link-tempbuffer
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(substring (buffer-string) 0 -1)))) ; chomp
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(kill-buffer rcov-xref-link-tempbuffer)))))
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;; copied from jw-visit-source
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(defun rcov-xref-extract-file-lines (line)
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"Extract a list of file/line pairs from the given line of text."
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(let*
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((unix_fn "[^ \t\n\r\"'([<{]+")
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(dos_fn "[a-zA-Z]:[^ \t\n\r\"'([<{]+")
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(flre (concat "\\(" unix_fn "\\|" dos_fn "\\):\\([0-9]+\\)"))
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(start nil)
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(result nil))
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(while (string-match flre line start)
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(setq start (match-end 0))
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(setq result
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(cons (list
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(substring line (match-beginning 1) (match-end 1))
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(string-to-int (substring line (match-beginning 2) (match-end 2))))
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result)))
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result))
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(defun rcov-xref-select-file-line (candidates)
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"Select a file/line candidate that references an existing file."
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(cond ((null candidates) nil)
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((file-readable-p (caar candidates)) (car candidates))
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(t (rcov-xref-select-file-line (cdr candidates))) ))
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(defun rcov-xref-visit-source ()
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"If the current line contains text like '../src/program.rb:34', visit
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that file in the other window and position point on that line."
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(interactive)
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(let* ((line (progn (looking-at rcov-xref-tag-regexp) (match-string 1)))
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(candidates (rcov-xref-extract-file-lines line))
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(file-line (rcov-xref-select-file-line candidates)))
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(cond (file-line
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(run-hooks 'rcov-xref-before-visit-source-hook)
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(find-file (car file-line))
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(goto-line (cadr file-line))
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(run-hooks 'rcov-xref-after-visit-source-hook))
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(t
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(error "No source location on line.")) )))
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;;;; Running rcov with various options.
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(defun rcov-internal (cmdline)
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"Run rcov with various options."
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(compile-internal cmdline ""
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nil nil nil (lambda (x) "*rcov*")))
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(defun rcov ()
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"Run rcov to find uncovered code."
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(interactive)
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(rcov-internal rcov-command-line))
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(defun rcovsave ()
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"Run rcov to save coverage status."
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(interactive)
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(rcov-internal rcovsave-command-line))
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(defun rcovdiff ()
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"Run rcov to find new uncovered code."
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(interactive)
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(rcov-internal rcovdiff-command-line))
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(provide 'rcov)
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" Vim compiler file
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" Language: Ruby
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" Function: Code coverage information with rcov
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" Maintainer: Mauricio Fernandez <mfp at acm dot org>
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" Info:
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" URL: http://eigenclass.org/hiki.rb?rcov
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" ----------------------------------------------------------------------------
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"
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" Changelog:
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" 0.1: initial version, shipped with rcov 0.6.0
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"
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" Comments:
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" Initial attempt.
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" ----------------------------------------------------------------------------
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if exists("current_compiler")
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finish
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endif
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let current_compiler = "rcov"
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if exists(":CompilerSet") != 2 " older Vim always used :setlocal
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command -nargs=* CompilerSet setlocal <args>
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endif
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let s:cpo_save = &cpo
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set cpo-=C
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CompilerSet makeprg=rake\ $*\ RCOVOPTS=\"-D\ --no-html\ --no-color\"\ $*
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CompilerSet errorformat=
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\%+W\#\#\#\ %f:%l\,
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32
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+
\%-C\ \ \ ,
|
33
|
+
\%-C!!\
|
34
|
+
|
35
|
+
let &cpo = s:cpo_save
|
36
|
+
unlet s:cpo_save
|
37
|
+
|
38
|
+
" vim: nowrap sw=2 sts=2 ts=8 ff=unix :
|
@@ -0,0 +1,216 @@
|
|
1
|
+
#include <ruby.h>
|
2
|
+
#include <env.h>
|
3
|
+
#include <node.h>
|
4
|
+
#include <st.h>
|
5
|
+
#include <stdlib.h>
|
6
|
+
|
7
|
+
static char callsite_hook_set_p;
|
8
|
+
|
9
|
+
typedef struct {
|
10
|
+
char *sourcefile;
|
11
|
+
unsigned int sourceline;
|
12
|
+
VALUE curr_meth;
|
13
|
+
} type_def_site;
|
14
|
+
|
15
|
+
static VALUE caller_info = 0;
|
16
|
+
static VALUE method_def_site_info = 0;
|
17
|
+
|
18
|
+
static caller_stack_len = 1;
|
19
|
+
|
20
|
+
static VALUE record_callsite_info(VALUE args) {
|
21
|
+
VALUE caller_ary;
|
22
|
+
VALUE curr_meth;
|
23
|
+
VALUE count_hash;
|
24
|
+
VALUE count;
|
25
|
+
VALUE *pargs = (VALUE *)args;
|
26
|
+
|
27
|
+
caller_ary = pargs[0];
|
28
|
+
curr_meth = pargs[1];
|
29
|
+
count_hash = rb_hash_aref(caller_info, curr_meth);
|
30
|
+
|
31
|
+
if(TYPE(count_hash) != T_HASH) {
|
32
|
+
/* Qnil, anything else should be impossible unless somebody's been
|
33
|
+
* messing with ObjectSpace */
|
34
|
+
count_hash = rb_hash_new();
|
35
|
+
rb_hash_aset(caller_info, curr_meth, count_hash);
|
36
|
+
}
|
37
|
+
|
38
|
+
count = rb_hash_aref(count_hash, caller_ary);
|
39
|
+
|
40
|
+
if(count == Qnil)
|
41
|
+
count = INT2FIX(0);
|
42
|
+
|
43
|
+
count = INT2FIX(FIX2UINT(count) + 1);
|
44
|
+
rb_hash_aset(count_hash, caller_ary, count);
|
45
|
+
/*
|
46
|
+
printf("CALLSITE: %s -> %s %d\n", RSTRING(rb_inspect(curr_meth))->ptr,
|
47
|
+
RSTRING(rb_inspect(caller_ary))->ptr, FIX2INT(count));
|
48
|
+
*/
|
49
|
+
|
50
|
+
return Qnil;
|
51
|
+
}
|
52
|
+
|
53
|
+
static VALUE record_method_def_site(VALUE args) {
|
54
|
+
type_def_site *pargs = (type_def_site *)args;
|
55
|
+
VALUE def_site_info;
|
56
|
+
VALUE hash;
|
57
|
+
|
58
|
+
if(RTEST(rb_hash_aref(method_def_site_info, pargs->curr_meth)))
|
59
|
+
return Qnil;
|
60
|
+
def_site_info = rb_ary_new();
|
61
|
+
rb_ary_push(def_site_info, rb_str_new2(pargs->sourcefile));
|
62
|
+
rb_ary_push(def_site_info, INT2NUM(pargs->sourceline+1));
|
63
|
+
rb_hash_aset(method_def_site_info, pargs->curr_meth, def_site_info);
|
64
|
+
/*
|
65
|
+
printf("DEFSITE: %s:%d for %s\n", pargs->sourcefile, pargs->sourceline+1,
|
66
|
+
RSTRING(rb_inspect(pargs->curr_meth))->ptr);
|
67
|
+
*/
|
68
|
+
|
69
|
+
return Qnil;
|
70
|
+
}
|
71
|
+
|
72
|
+
static VALUE callsite_custom_backtrace(int lev) {
|
73
|
+
struct FRAME *frame = ruby_frame;
|
74
|
+
VALUE ary;
|
75
|
+
NODE *n;
|
76
|
+
VALUE level;
|
77
|
+
VALUE klass;
|
78
|
+
|
79
|
+
ary = rb_ary_new();
|
80
|
+
|
81
|
+
if (frame->last_func == ID_ALLOCATOR) {
|
82
|
+
frame = frame->prev;
|
83
|
+
}
|
84
|
+
|
85
|
+
for (; frame && (n = frame->node); frame = frame->prev) {
|
86
|
+
if (frame->prev && frame->prev->last_func) {
|
87
|
+
if (frame->prev->node == n) continue;
|
88
|
+
level = rb_ary_new();
|
89
|
+
klass = frame->prev->last_class ? frame->prev->last_class : Qnil;
|
90
|
+
if(TYPE(klass) == T_ICLASS) {
|
91
|
+
klass = CLASS_OF(klass);
|
92
|
+
}
|
93
|
+
rb_ary_push(level, klass);
|
94
|
+
rb_ary_push(level, ID2SYM(frame->prev->last_func));
|
95
|
+
rb_ary_push(level, rb_str_new2(n->nd_file));
|
96
|
+
rb_ary_push(level, INT2NUM(nd_line(n)));
|
97
|
+
}
|
98
|
+
else {
|
99
|
+
level = rb_ary_new();
|
100
|
+
rb_ary_push(level, Qnil);
|
101
|
+
rb_ary_push(level, Qnil);
|
102
|
+
rb_ary_push(level, rb_str_new2(n->nd_file));
|
103
|
+
rb_ary_push(level, INT2NUM(nd_line(n)));
|
104
|
+
}
|
105
|
+
rb_ary_push(ary, level);
|
106
|
+
if(--lev == 0)
|
107
|
+
break;
|
108
|
+
}
|
109
|
+
|
110
|
+
return ary;
|
111
|
+
}
|
112
|
+
|
113
|
+
static void coverage_event_callsite_hook(rb_event_t event, NODE *node, VALUE self, ID mid, VALUE klass) {
|
114
|
+
VALUE caller_ary;
|
115
|
+
VALUE curr_meth;
|
116
|
+
VALUE args[2];
|
117
|
+
int status;
|
118
|
+
|
119
|
+
caller_ary = callsite_custom_backtrace(caller_stack_len);
|
120
|
+
|
121
|
+
if(TYPE(klass) == T_ICLASS) {
|
122
|
+
klass = CLASS_OF(klass);
|
123
|
+
}
|
124
|
+
|
125
|
+
curr_meth = rb_ary_new();
|
126
|
+
rb_ary_push(curr_meth, klass);
|
127
|
+
rb_ary_push(curr_meth, ID2SYM(mid));
|
128
|
+
|
129
|
+
args[0] = caller_ary;
|
130
|
+
args[1] = curr_meth;
|
131
|
+
rb_protect(record_callsite_info, (VALUE)args, &status);
|
132
|
+
|
133
|
+
if(!status && node) {
|
134
|
+
type_def_site args;
|
135
|
+
|
136
|
+
args.sourcefile = node->nd_file;
|
137
|
+
args.sourceline = nd_line(node) - 1;
|
138
|
+
args.curr_meth = curr_meth;
|
139
|
+
rb_protect(record_method_def_site, (VALUE)&args, NULL);
|
140
|
+
}
|
141
|
+
|
142
|
+
if(status)
|
143
|
+
rb_gv_set("$!", Qnil);
|
144
|
+
}
|
145
|
+
|
146
|
+
static VALUE cov_install_callsite_hook(VALUE self) {
|
147
|
+
if(!callsite_hook_set_p) {
|
148
|
+
if(TYPE(caller_info) != T_HASH)
|
149
|
+
caller_info = rb_hash_new();
|
150
|
+
callsite_hook_set_p = 1;
|
151
|
+
rb_add_event_hook(coverage_event_callsite_hook, RUBY_EVENT_CALL);
|
152
|
+
|
153
|
+
return Qtrue;
|
154
|
+
}
|
155
|
+
else
|
156
|
+
return Qfalse;
|
157
|
+
}
|
158
|
+
|
159
|
+
static VALUE cov_remove_callsite_hook(VALUE self) {
|
160
|
+
if(!callsite_hook_set_p)
|
161
|
+
return Qfalse;
|
162
|
+
else {
|
163
|
+
rb_remove_event_hook(coverage_event_callsite_hook);
|
164
|
+
callsite_hook_set_p = 0;
|
165
|
+
return Qtrue;
|
166
|
+
}
|
167
|
+
}
|
168
|
+
|
169
|
+
static VALUE cov_generate_callsite_info(VALUE self) {
|
170
|
+
VALUE ret;
|
171
|
+
|
172
|
+
ret = rb_ary_new();
|
173
|
+
rb_ary_push(ret, caller_info);
|
174
|
+
rb_ary_push(ret, method_def_site_info);
|
175
|
+
return ret;
|
176
|
+
}
|
177
|
+
|
178
|
+
static VALUE cov_reset_callsite(VALUE self) {
|
179
|
+
if(callsite_hook_set_p) {
|
180
|
+
rb_raise(rb_eRuntimeError, "Cannot reset the callsite info in the middle of a traced run.");
|
181
|
+
return Qnil;
|
182
|
+
}
|
183
|
+
|
184
|
+
caller_info = rb_hash_new();
|
185
|
+
method_def_site_info = rb_hash_new();
|
186
|
+
return Qnil;
|
187
|
+
}
|
188
|
+
|
189
|
+
void Init_rcov_callsite() {
|
190
|
+
VALUE mRcov;
|
191
|
+
VALUE mRCOV__;
|
192
|
+
ID id_rcov = rb_intern("Rcov");
|
193
|
+
ID id_coverage__ = rb_intern("RCOV__");
|
194
|
+
ID id_script_lines__ = rb_intern("SCRIPT_LINES__");
|
195
|
+
|
196
|
+
if(rb_const_defined(rb_cObject, id_rcov))
|
197
|
+
mRcov = rb_const_get(rb_cObject, id_rcov);
|
198
|
+
else
|
199
|
+
mRcov = rb_define_module("Rcov");
|
200
|
+
|
201
|
+
if(rb_const_defined(mRcov, id_coverage__))
|
202
|
+
mRCOV__ = rb_const_get_at(mRcov, id_coverage__);
|
203
|
+
else
|
204
|
+
mRCOV__ = rb_define_module_under(mRcov, "RCOV__");
|
205
|
+
|
206
|
+
callsite_hook_set_p = 0;
|
207
|
+
caller_info = rb_hash_new();
|
208
|
+
method_def_site_info = rb_hash_new();
|
209
|
+
rb_gc_register_address(&caller_info);
|
210
|
+
rb_gc_register_address(&method_def_site_info);
|
211
|
+
|
212
|
+
rb_define_singleton_method(mRCOV__, "install_callsite_hook", cov_install_callsite_hook, 0);
|
213
|
+
rb_define_singleton_method(mRCOV__, "remove_callsite_hook", cov_remove_callsite_hook, 0);
|
214
|
+
rb_define_singleton_method(mRCOV__, "generate_callsite_info", cov_generate_callsite_info, 0);
|
215
|
+
rb_define_singleton_method(mRCOV__, "reset_callsite", cov_reset_callsite, 0);
|
216
|
+
}
|
@@ -0,0 +1,294 @@
|
|
1
|
+
#include <ruby.h>
|
2
|
+
#include <env.h>
|
3
|
+
#include <node.h>
|
4
|
+
#include <st.h>
|
5
|
+
#include <stdlib.h>
|
6
|
+
#include <assert.h>
|
7
|
+
|
8
|
+
#define COVERAGE_DEBUG_EVENTS 0
|
9
|
+
|
10
|
+
#define RCOVRT_VERSION_MAJOR 2
|
11
|
+
#define RCOVRT_VERSION_MINOR 0
|
12
|
+
#define RCOVRT_VERSION_REV 0
|
13
|
+
|
14
|
+
static VALUE mRcov;
|
15
|
+
static VALUE mRCOV__;
|
16
|
+
static VALUE oSCRIPT_LINES__;
|
17
|
+
static ID id_cover;
|
18
|
+
static st_table* coverinfo = 0;
|
19
|
+
static char coverage_hook_set_p;
|
20
|
+
|
21
|
+
struct cov_array {
|
22
|
+
unsigned int len;
|
23
|
+
unsigned int *ptr;
|
24
|
+
};
|
25
|
+
|
26
|
+
static struct cov_array *cached_array = 0;
|
27
|
+
static char *cached_file = 0;
|
28
|
+
|
29
|
+
static struct cov_array * coverage_increase_counter_uncached(char *sourcefile, unsigned int sourceline, char mark_only) {
|
30
|
+
struct cov_array *carray = NULL;
|
31
|
+
|
32
|
+
if(sourcefile == NULL) {
|
33
|
+
/* "can't happen", just ignore and avoid segfault */
|
34
|
+
return NULL;
|
35
|
+
}
|
36
|
+
else if(!st_lookup(coverinfo, (st_data_t)sourcefile, (st_data_t*)&carray)) {
|
37
|
+
VALUE arr;
|
38
|
+
|
39
|
+
arr = rb_hash_aref(oSCRIPT_LINES__, rb_str_new2(sourcefile));
|
40
|
+
if(NIL_P(arr))
|
41
|
+
return 0;
|
42
|
+
rb_check_type(arr, T_ARRAY);
|
43
|
+
carray = calloc(1, sizeof(struct cov_array));
|
44
|
+
carray->ptr = calloc(RARRAY(arr)->len, sizeof(unsigned int));
|
45
|
+
carray->len = RARRAY(arr)->len;
|
46
|
+
st_insert(coverinfo, (st_data_t)strdup(sourcefile), (st_data_t) carray);
|
47
|
+
}
|
48
|
+
else {
|
49
|
+
/* recovered carray, sanity check */
|
50
|
+
assert(carray && "failed to create valid carray");
|
51
|
+
}
|
52
|
+
|
53
|
+
if(mark_only) {
|
54
|
+
if (carray && carray->len > sourceline) {
|
55
|
+
if(!carray->ptr[sourceline])
|
56
|
+
carray->ptr[sourceline] = 1;
|
57
|
+
} else {
|
58
|
+
#if COVERAGE_DEBUG_EVENTS
|
59
|
+
printf("DEBUG: %s carray->len:%d sourceline:%d\n",
|
60
|
+
sourcefile, carray->len, sourceline);
|
61
|
+
#endif
|
62
|
+
}
|
63
|
+
} else {
|
64
|
+
if (carray && carray->len > sourceline) {
|
65
|
+
carray->ptr[sourceline]++;
|
66
|
+
}
|
67
|
+
}
|
68
|
+
|
69
|
+
return carray;
|
70
|
+
}
|
71
|
+
|
72
|
+
static void coverage_mark_caller() {
|
73
|
+
struct FRAME *frame = ruby_frame;
|
74
|
+
NODE *n;
|
75
|
+
|
76
|
+
if (frame->last_func == ID_ALLOCATOR) {
|
77
|
+
frame = frame->prev;
|
78
|
+
}
|
79
|
+
for (; frame && (n = frame->node); frame = frame->prev) {
|
80
|
+
if (frame->prev && frame->prev->last_func) {
|
81
|
+
if (frame->prev->node == n) {
|
82
|
+
if (frame->prev->last_func == frame->last_func) continue;
|
83
|
+
}
|
84
|
+
coverage_increase_counter_uncached(n->nd_file, nd_line(n) - 1, 1);
|
85
|
+
}
|
86
|
+
else {
|
87
|
+
coverage_increase_counter_uncached(n->nd_file, nd_line(n) - 1, 1);
|
88
|
+
}
|
89
|
+
break;
|
90
|
+
}
|
91
|
+
}
|
92
|
+
|
93
|
+
static void coverage_increase_counter_cached(char *sourcefile, int sourceline) {
|
94
|
+
if(cached_file == sourcefile && cached_array && cached_array->len > sourceline) {
|
95
|
+
cached_array->ptr[sourceline]++;
|
96
|
+
return;
|
97
|
+
}
|
98
|
+
cached_file = sourcefile;
|
99
|
+
cached_array = coverage_increase_counter_uncached(sourcefile, sourceline, 0);
|
100
|
+
}
|
101
|
+
|
102
|
+
static void coverage_event_coverage_hook(rb_event_t event, NODE *node, VALUE self, ID mid, VALUE klass) {
|
103
|
+
char *sourcefile;
|
104
|
+
unsigned int sourceline;
|
105
|
+
static unsigned int in_hook = 0;
|
106
|
+
|
107
|
+
if(in_hook) {
|
108
|
+
return;
|
109
|
+
}
|
110
|
+
|
111
|
+
in_hook++;
|
112
|
+
|
113
|
+
#if COVERAGE_DEBUG_EVENTS
|
114
|
+
do {
|
115
|
+
int status;
|
116
|
+
VALUE old_exception;
|
117
|
+
old_exception = rb_gv_get("$!");
|
118
|
+
rb_protect(rb_inspect, klass, &status);
|
119
|
+
if(!status) {
|
120
|
+
printf("EVENT: %d %s %s %s %d\n", event,
|
121
|
+
klass ? RSTRING(rb_inspect(klass))->ptr : "",
|
122
|
+
mid ? (mid == ID_ALLOCATOR ? "ID_ALLOCATOR" : rb_id2name(mid))
|
123
|
+
: "unknown",
|
124
|
+
node ? node->nd_file : "", node ? nd_line(node) : 0);
|
125
|
+
}
|
126
|
+
else {
|
127
|
+
printf("EVENT: %d %s %s %d\n", event,
|
128
|
+
mid ? (mid == ID_ALLOCATOR ? "ID_ALLOCATOR" : rb_id2name(mid))
|
129
|
+
: "unknown",
|
130
|
+
node ? node->nd_file : "", node ? nd_line(node) : 0);
|
131
|
+
}
|
132
|
+
|
133
|
+
rb_gv_set("$!", old_exception);
|
134
|
+
} while (0);
|
135
|
+
#endif
|
136
|
+
|
137
|
+
if(event & RUBY_EVENT_C_CALL) {
|
138
|
+
coverage_mark_caller();
|
139
|
+
}
|
140
|
+
|
141
|
+
if(event & (RUBY_EVENT_C_CALL | RUBY_EVENT_C_RETURN | RUBY_EVENT_CLASS)) {
|
142
|
+
in_hook--;
|
143
|
+
return;
|
144
|
+
}
|
145
|
+
|
146
|
+
if(node == NULL) {
|
147
|
+
in_hook--;
|
148
|
+
return;
|
149
|
+
}
|
150
|
+
|
151
|
+
sourcefile = node->nd_file;
|
152
|
+
sourceline = nd_line(node) - 1;
|
153
|
+
|
154
|
+
coverage_increase_counter_cached(sourcefile, sourceline);
|
155
|
+
|
156
|
+
if(event & RUBY_EVENT_CALL)
|
157
|
+
coverage_mark_caller();
|
158
|
+
in_hook--;
|
159
|
+
}
|
160
|
+
|
161
|
+
static VALUE cov_install_coverage_hook(VALUE self) {
|
162
|
+
if(!coverage_hook_set_p) {
|
163
|
+
if(!coverinfo)
|
164
|
+
coverinfo = st_init_strtable();
|
165
|
+
coverage_hook_set_p = 1;
|
166
|
+
/* TODO: allow C_CALL too, since it's supported already
|
167
|
+
* the overhead is around ~30%, tested on typo */
|
168
|
+
rb_add_event_hook(coverage_event_coverage_hook, RUBY_EVENT_ALL & ~RUBY_EVENT_C_CALL & ~RUBY_EVENT_C_RETURN & ~RUBY_EVENT_CLASS);
|
169
|
+
|
170
|
+
return Qtrue;
|
171
|
+
}
|
172
|
+
else
|
173
|
+
return Qfalse;
|
174
|
+
}
|
175
|
+
|
176
|
+
static int populate_cover(st_data_t key, st_data_t value, st_data_t cover) {
|
177
|
+
VALUE rcover;
|
178
|
+
VALUE rkey;
|
179
|
+
VALUE rval;
|
180
|
+
struct cov_array *carray;
|
181
|
+
unsigned int i;
|
182
|
+
|
183
|
+
rcover = (VALUE)cover;
|
184
|
+
carray = (struct cov_array *) value;
|
185
|
+
rkey = rb_str_new2((char*) key);
|
186
|
+
rval = rb_ary_new2(carray->len);
|
187
|
+
|
188
|
+
for(i = 0; i < carray->len; i++)
|
189
|
+
RARRAY(rval)->ptr[i] = UINT2NUM(carray->ptr[i]);
|
190
|
+
|
191
|
+
RARRAY(rval)->len = carray->len;
|
192
|
+
rb_hash_aset(rcover, rkey, rval);
|
193
|
+
|
194
|
+
return ST_CONTINUE;
|
195
|
+
}
|
196
|
+
|
197
|
+
static int free_table(st_data_t key, st_data_t value, st_data_t ignored) {
|
198
|
+
struct cov_array *carray;
|
199
|
+
|
200
|
+
carray = (struct cov_array *) value;
|
201
|
+
free((char *)key);
|
202
|
+
free(carray->ptr);
|
203
|
+
free(carray);
|
204
|
+
|
205
|
+
return ST_CONTINUE;
|
206
|
+
}
|
207
|
+
|
208
|
+
static VALUE cov_remove_coverage_hook(VALUE self) {
|
209
|
+
if(!coverage_hook_set_p)
|
210
|
+
return Qfalse;
|
211
|
+
else {
|
212
|
+
rb_remove_event_hook(coverage_event_coverage_hook);
|
213
|
+
coverage_hook_set_p = 0;
|
214
|
+
return Qtrue;
|
215
|
+
}
|
216
|
+
}
|
217
|
+
|
218
|
+
static VALUE cov_generate_coverage_info(VALUE self) {
|
219
|
+
VALUE cover;
|
220
|
+
|
221
|
+
if(rb_const_defined_at(mRCOV__, id_cover)) {
|
222
|
+
rb_mod_remove_const(mRCOV__, ID2SYM(id_cover));
|
223
|
+
}
|
224
|
+
|
225
|
+
cover = rb_hash_new();
|
226
|
+
|
227
|
+
if(coverinfo)
|
228
|
+
st_foreach(coverinfo, populate_cover, cover);
|
229
|
+
|
230
|
+
rb_define_const(mRCOV__, "COVER", cover);
|
231
|
+
|
232
|
+
return cover;
|
233
|
+
}
|
234
|
+
|
235
|
+
static VALUE cov_reset_coverage(VALUE self) {
|
236
|
+
if(coverage_hook_set_p) {
|
237
|
+
rb_raise(rb_eRuntimeError, "Cannot reset the coverage info in the middle of a traced run.");
|
238
|
+
return Qnil;
|
239
|
+
}
|
240
|
+
|
241
|
+
cached_array = 0;
|
242
|
+
cached_file = 0;
|
243
|
+
st_foreach(coverinfo, free_table, Qnil);
|
244
|
+
st_free_table(coverinfo);
|
245
|
+
coverinfo = 0;
|
246
|
+
|
247
|
+
return Qnil;
|
248
|
+
}
|
249
|
+
|
250
|
+
static VALUE cov_ABI(VALUE self) {
|
251
|
+
VALUE ret;
|
252
|
+
|
253
|
+
ret = rb_ary_new();
|
254
|
+
rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_MAJOR));
|
255
|
+
rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_MINOR));
|
256
|
+
rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_REV));
|
257
|
+
|
258
|
+
return ret;
|
259
|
+
}
|
260
|
+
|
261
|
+
void Init_rcovrt() {
|
262
|
+
ID id_rcov = rb_intern("Rcov");
|
263
|
+
ID id_coverage__ = rb_intern("RCOV__");
|
264
|
+
ID id_script_lines__ = rb_intern("SCRIPT_LINES__");
|
265
|
+
|
266
|
+
id_cover = rb_intern("COVER");
|
267
|
+
|
268
|
+
if(rb_const_defined(rb_cObject, id_rcov))
|
269
|
+
mRcov = rb_const_get(rb_cObject, id_rcov);
|
270
|
+
else
|
271
|
+
mRcov = rb_define_module("Rcov");
|
272
|
+
|
273
|
+
if(rb_const_defined(mRcov, id_coverage__))
|
274
|
+
mRCOV__ = rb_const_get_at(mRcov, id_coverage__);
|
275
|
+
else
|
276
|
+
mRCOV__ = rb_define_module_under(mRcov, "RCOV__");
|
277
|
+
|
278
|
+
if(rb_const_defined(rb_cObject, id_script_lines__))
|
279
|
+
oSCRIPT_LINES__ = rb_const_get(rb_cObject, rb_intern("SCRIPT_LINES__"));
|
280
|
+
else {
|
281
|
+
oSCRIPT_LINES__ = rb_hash_new();
|
282
|
+
rb_const_set(rb_cObject, id_script_lines__, oSCRIPT_LINES__);
|
283
|
+
}
|
284
|
+
|
285
|
+
coverage_hook_set_p = 0;
|
286
|
+
|
287
|
+
rb_define_singleton_method(mRCOV__, "install_coverage_hook", cov_install_coverage_hook, 0);
|
288
|
+
rb_define_singleton_method(mRCOV__, "remove_coverage_hook", cov_remove_coverage_hook, 0);
|
289
|
+
rb_define_singleton_method(mRCOV__, "generate_coverage_info", cov_generate_coverage_info, 0);
|
290
|
+
rb_define_singleton_method(mRCOV__, "reset_coverage", cov_reset_coverage, 0);
|
291
|
+
rb_define_singleton_method(mRCOV__, "ABI", cov_ABI, 0);
|
292
|
+
|
293
|
+
Init_rcov_callsite();
|
294
|
+
}
|