search_biomodel 0.1.2 → 1.0.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (1059) hide show
  1. data/Gemfile +1 -2
  2. data/Gemfile.lock +17 -3
  3. data/README.rdoc +9 -2
  4. data/VERSION +1 -1
  5. data/lib/search_biomodel.rb +11 -8
  6. data/search_biomodel.gemspec +1055 -9
  7. data/search_biomodel/ruby/1.8/bin/jeweler +19 -0
  8. data/search_biomodel/ruby/1.8/bin/nokogiri +19 -0
  9. data/search_biomodel/ruby/1.8/bin/rackup +19 -0
  10. data/search_biomodel/ruby/1.8/bin/rake +19 -0
  11. data/search_biomodel/ruby/1.8/bin/rcov +19 -0
  12. data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
  13. data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
  14. data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
  15. data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
  16. data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
  17. data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
  18. data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
  19. data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
  20. data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
  21. data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
  22. data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
  23. data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
  24. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +89 -0
  25. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +229 -0
  26. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +232 -0
  27. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +296 -0
  28. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +55364 -0
  29. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +109 -0
  30. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +13 -0
  31. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +23 -0
  32. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +197 -0
  33. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +160 -0
  34. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +63 -0
  35. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +334 -0
  36. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +40 -0
  37. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +39 -0
  38. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +225 -0
  39. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +125 -0
  40. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +150 -0
  41. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +546 -0
  42. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +39 -0
  43. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +77 -0
  44. data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +240 -0
  45. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +156 -0
  46. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +14 -0
  47. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +479 -0
  48. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +104 -0
  49. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +48 -0
  50. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +146 -0
  51. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +5 -0
  52. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +719 -0
  53. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +117 -0
  54. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +273 -0
  55. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +27 -0
  56. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +40 -0
  57. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +4 -0
  58. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +27 -0
  59. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +44 -0
  60. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +110 -0
  61. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +4 -0
  62. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
  63. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +9 -0
  64. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +1 -0
  65. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +7 -0
  66. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +55 -0
  67. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +2 -0
  68. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +20 -0
  69. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +81 -0
  70. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +11 -0
  71. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +26 -0
  72. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +23 -0
  73. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +45 -0
  74. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +19 -0
  75. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +55 -0
  76. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +5 -0
  77. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +63 -0
  78. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +28 -0
  79. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +53 -0
  80. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +17 -0
  81. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +160 -0
  82. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +77 -0
  83. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +49 -0
  84. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +46 -0
  85. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +2 -0
  86. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +5 -0
  87. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
  88. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +9 -0
  89. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +1 -0
  90. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +7 -0
  91. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +60 -0
  92. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +8 -0
  93. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +20 -0
  94. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +223 -0
  95. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +18 -0
  96. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +1 -0
  97. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +28 -0
  98. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +198 -0
  99. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +67 -0
  100. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +125 -0
  101. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +98 -0
  102. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +117 -0
  103. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +81 -0
  104. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +91 -0
  105. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +56 -0
  106. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +90 -0
  107. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +85 -0
  108. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +5 -0
  109. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
  110. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +16 -0
  111. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +15 -0
  112. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
  113. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +10 -0
  114. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
  115. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +1 -0
  116. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +232 -0
  117. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +164 -0
  118. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +142 -0
  119. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +55 -0
  120. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +117 -0
  121. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +128 -0
  122. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +284 -0
  123. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +135 -0
  124. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +125 -0
  125. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +95 -0
  126. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +39 -0
  127. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +12 -0
  128. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +27 -0
  129. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +19 -0
  130. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +8 -0
  131. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +166 -0
  132. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +22 -0
  133. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +59 -0
  134. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +20 -0
  135. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +216 -0
  136. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +81 -0
  137. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +5 -0
  138. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +103 -0
  139. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +86 -0
  140. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +13 -0
  141. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +9 -0
  142. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +71 -0
  143. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +102 -0
  144. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +20 -0
  145. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +158 -0
  146. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +12 -0
  147. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +54 -0
  148. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +149 -0
  149. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +5 -0
  150. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +6 -0
  151. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +70 -0
  152. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +382 -0
  153. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +6 -0
  154. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +42 -0
  155. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +9 -0
  156. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +31 -0
  157. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +49 -0
  158. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +244 -0
  159. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler.rb +177 -0
  160. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +20 -0
  161. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +36 -0
  162. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +50 -0
  163. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +31 -0
  164. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +82 -0
  165. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +59 -0
  166. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +28 -0
  167. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +30 -0
  168. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +55 -0
  169. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +13 -0
  170. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +12 -0
  171. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +14 -0
  172. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +12 -0
  173. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +39 -0
  174. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +8 -0
  175. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +8 -0
  176. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +87 -0
  177. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +287 -0
  178. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +61 -0
  179. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +43 -0
  180. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +29 -0
  181. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +41 -0
  182. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +42 -0
  183. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +162 -0
  184. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +9 -0
  185. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +42 -0
  186. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +42 -0
  187. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +44 -0
  188. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +42 -0
  189. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +42 -0
  190. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +39 -0
  191. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +14 -0
  192. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +95 -0
  193. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +38 -0
  194. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +38 -0
  195. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +110 -0
  196. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +224 -0
  197. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +5 -0
  198. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +48 -0
  199. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +12 -0
  200. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +20 -0
  201. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +19 -0
  202. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Rakefile +9 -0
  203. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/flunking.rb +7 -0
  204. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/helper.rb +9 -0
  205. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bundler_setup.erb +10 -0
  206. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/default.feature +9 -0
  207. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/support/env.rb +10 -0
  208. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/jeweler_tasks.erb +31 -0
  209. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/micronaut/flunking.rb +7 -0
  210. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/micronaut/helper.rb +18 -0
  211. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/minitest/flunking.rb +7 -0
  212. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/minitest/helper.rb +12 -0
  213. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/other_tasks.erb +86 -0
  214. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/riot/flunking.rb +11 -0
  215. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/riot/helper.rb +4 -0
  216. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/rspec/.rspec +1 -0
  217. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/rspec/flunking.rb +7 -0
  218. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/rspec/helper.rb +12 -0
  219. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shindo/flunking.rb +8 -0
  220. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shindo/helper.rb +6 -0
  221. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shoulda/flunking.rb +7 -0
  222. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/shoulda/helper.rb +11 -0
  223. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testspec/flunking.rb +7 -0
  224. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testspec/helper.rb +7 -0
  225. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testunit/flunking.rb +7 -0
  226. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/testunit/helper.rb +10 -0
  227. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/version.rb +10 -0
  228. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/version_helper.rb +141 -0
  229. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/VERSION.yml +4 -0
  230. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/bin/foo_the_ultimate_bin +1 -0
  231. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/hey_include_me_in_gemspec +0 -0
  232. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/bar/lib/foo_the_ultimate_lib.rb +1 -0
  233. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/.document +5 -0
  234. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/.gitignore +5 -0
  235. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/LICENSE.txt +20 -0
  236. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/README.rdoc +7 -0
  237. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/Rakefile +85 -0
  238. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/existing-project-with-version.gemspec +29 -0
  239. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/lib/existing_project_with_version.rb +0 -0
  240. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/test/existing_project_with_version_test.rb +7 -0
  241. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-constant/test/test_helper.rb +10 -0
  242. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/.document +5 -0
  243. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/.gitignore +5 -0
  244. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/LICENSE.txt +20 -0
  245. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/README.rdoc +7 -0
  246. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/Rakefile +84 -0
  247. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/VERSION +1 -0
  248. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/existing-project-with-version.gemspec +29 -0
  249. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/lib/existing_project_with_version.rb +0 -0
  250. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/test/existing_project_with_version_test.rb +7 -0
  251. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-plaintext/test/test_helper.rb +10 -0
  252. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/.document +5 -0
  253. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/.gitignore +5 -0
  254. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/LICENSE.txt +20 -0
  255. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/README.rdoc +7 -0
  256. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/Rakefile +84 -0
  257. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/VERSION.yml +4 -0
  258. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/bin/foo_the_ultimate_bin +0 -0
  259. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/existing-project-with-version.gemspec +29 -0
  260. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/lib/existing_project_with_version.rb +0 -0
  261. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/test/existing_project_with_version_test.rb +7 -0
  262. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/fixtures/existing-project-with-version-yaml/test/test_helper.rb +10 -0
  263. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/geminstaller.yml +12 -0
  264. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_build_gem.rb +103 -0
  265. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_install_gem.rb +35 -0
  266. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_release_to_gemcutter.rb +39 -0
  267. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_release_to_git.rb +208 -0
  268. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_release_to_github.rb +406 -0
  269. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_validate_gemspec.rb +27 -0
  270. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/test_write_gemspec.rb +101 -0
  271. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_base.rb +32 -0
  272. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_bump_major.rb +22 -0
  273. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_bump_minor.rb +19 -0
  274. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_bump_patch.rb +20 -0
  275. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/commands/version/test_write.rb +22 -0
  276. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/generator/test_application.rb +120 -0
  277. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/generator/test_options.rb +225 -0
  278. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_gemspec_helper.rb +44 -0
  279. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_generator.rb +127 -0
  280. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_generator_initialization.rb +164 -0
  281. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_generator_mixins.rb +23 -0
  282. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_specification.rb +237 -0
  283. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_tasks.rb +50 -0
  284. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/jeweler/test_version_helper.rb +214 -0
  285. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/shoulda_macros/jeweler_macros.rb +35 -0
  286. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/test_helper.rb +178 -0
  287. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/test/test_jeweler.rb +175 -0
  288. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/.autotest +26 -0
  289. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/.gemtest +0 -0
  290. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/CHANGELOG.ja.rdoc +480 -0
  291. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/CHANGELOG.rdoc +475 -0
  292. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/Manifest.txt +283 -0
  293. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/README.ja.rdoc +102 -0
  294. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/README.rdoc +146 -0
  295. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/Rakefile +191 -0
  296. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/bin/nokogiri +54 -0
  297. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/Makefile +515 -0
  298. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/depend +358 -0
  299. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/extconf.rb +118 -0
  300. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_document.c +154 -0
  301. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_document.h +10 -0
  302. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_document.o +0 -0
  303. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_element_description.c +276 -0
  304. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_element_description.h +10 -0
  305. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_element_description.o +0 -0
  306. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_entity_lookup.c +32 -0
  307. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_entity_lookup.h +8 -0
  308. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_entity_lookup.o +0 -0
  309. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_sax_parser_context.c +94 -0
  310. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_sax_parser_context.h +11 -0
  311. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/html_sax_parser_context.o +0 -0
  312. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/mkmf.log +278 -0
  313. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.c +97 -0
  314. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.h +162 -0
  315. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.o +0 -0
  316. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/nokogiri.so +0 -0
  317. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attr.c +94 -0
  318. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attr.h +9 -0
  319. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attr.o +0 -0
  320. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attribute_decl.c +70 -0
  321. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attribute_decl.h +9 -0
  322. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_attribute_decl.o +0 -0
  323. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_cdata.c +56 -0
  324. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_cdata.h +9 -0
  325. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_cdata.o +0 -0
  326. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_comment.c +54 -0
  327. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_comment.h +9 -0
  328. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_comment.o +0 -0
  329. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document.c +478 -0
  330. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document.h +23 -0
  331. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document.o +0 -0
  332. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document_fragment.c +48 -0
  333. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document_fragment.h +10 -0
  334. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_document_fragment.o +0 -0
  335. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_dtd.c +202 -0
  336. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_dtd.h +10 -0
  337. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_dtd.o +0 -0
  338. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_content.c +123 -0
  339. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_content.h +10 -0
  340. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_content.o +0 -0
  341. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_decl.c +69 -0
  342. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_decl.h +9 -0
  343. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_element_decl.o +0 -0
  344. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_encoding_handler.c +79 -0
  345. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_encoding_handler.h +8 -0
  346. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_encoding_handler.o +0 -0
  347. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_decl.c +110 -0
  348. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_decl.h +10 -0
  349. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_decl.o +0 -0
  350. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_reference.c +52 -0
  351. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_reference.h +9 -0
  352. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_entity_reference.o +0 -0
  353. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_io.c +56 -0
  354. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_io.h +11 -0
  355. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_io.o +0 -0
  356. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_libxml2_hacks.c +112 -0
  357. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_libxml2_hacks.h +12 -0
  358. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_libxml2_hacks.o +0 -0
  359. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_namespace.c +84 -0
  360. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_namespace.h +13 -0
  361. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_namespace.o +0 -0
  362. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node.c +1391 -0
  363. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node.h +13 -0
  364. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node.o +0 -0
  365. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node_set.c +418 -0
  366. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node_set.h +9 -0
  367. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_node_set.o +0 -0
  368. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_processing_instruction.c +56 -0
  369. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_processing_instruction.h +9 -0
  370. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_processing_instruction.o +0 -0
  371. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_reader.c +684 -0
  372. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_reader.h +10 -0
  373. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_reader.o +0 -0
  374. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.c +168 -0
  375. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.h +9 -0
  376. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.o +0 -0
  377. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser.c +288 -0
  378. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser.h +39 -0
  379. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser.o +0 -0
  380. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.c +199 -0
  381. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.h +10 -0
  382. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.o +0 -0
  383. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_push_parser.c +115 -0
  384. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_push_parser.h +9 -0
  385. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_push_parser.o +0 -0
  386. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_schema.c +205 -0
  387. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_schema.h +9 -0
  388. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_schema.o +0 -0
  389. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_syntax_error.c +58 -0
  390. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_syntax_error.h +13 -0
  391. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_syntax_error.o +0 -0
  392. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_text.c +50 -0
  393. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_text.h +9 -0
  394. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_text.o +0 -0
  395. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_xpath_context.c +309 -0
  396. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_xpath_context.h +9 -0
  397. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_xpath_context.o +0 -0
  398. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xslt_stylesheet.c +260 -0
  399. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xslt_stylesheet.h +9 -0
  400. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xslt_stylesheet.o +0 -0
  401. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri.rb +133 -0
  402. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css.rb +28 -0
  403. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/node.rb +99 -0
  404. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/parser.rb +677 -0
  405. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/parser.y +237 -0
  406. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/parser_extras.rb +91 -0
  407. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/syntax_error.rb +7 -0
  408. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/tokenizer.rb +152 -0
  409. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/tokenizer.rex +55 -0
  410. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/xpath_visitor.rb +171 -0
  411. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/decorators/slop.rb +35 -0
  412. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/encoding_handler.rb +42 -0
  413. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/document.rb +28 -0
  414. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/element_description.rb +81 -0
  415. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/entity_lookup.rb +16 -0
  416. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/sax/parser_context.rb +38 -0
  417. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/io_callbacks.rb +42 -0
  418. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/libxml.rb +420 -0
  419. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/common_node.rb +38 -0
  420. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_elem_desc.rb +24 -0
  421. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_entity_desc.rb +13 -0
  422. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_alloc.rb +16 -0
  423. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attr.rb +20 -0
  424. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attribute.rb +27 -0
  425. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_buffer.rb +16 -0
  426. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_char_encoding_handler.rb +11 -0
  427. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_document.rb +117 -0
  428. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_dtd.rb +28 -0
  429. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element.rb +26 -0
  430. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element_content.rb +17 -0
  431. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_entity.rb +32 -0
  432. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_enumeration.rb +12 -0
  433. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node.rb +28 -0
  434. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node_set.rb +53 -0
  435. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_notation.rb +11 -0
  436. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_ns.rb +15 -0
  437. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_context.rb +20 -0
  438. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_input.rb +19 -0
  439. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_relax_ng.rb +14 -0
  440. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_handler.rb +51 -0
  441. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_push_parser_context.rb +124 -0
  442. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_schema.rb +13 -0
  443. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_syntax_error.rb +31 -0
  444. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_text_reader.rb +12 -0
  445. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_context.rb +38 -0
  446. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_object.rb +35 -0
  447. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_parser_context.rb +20 -0
  448. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xslt_stylesheet.rb +13 -0
  449. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/weak_bucket.rb +40 -0
  450. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attr.rb +41 -0
  451. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attribute_decl.rb +27 -0
  452. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/cdata.rb +19 -0
  453. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/comment.rb +18 -0
  454. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/document.rb +174 -0
  455. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/document_fragment.rb +21 -0
  456. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/dtd.rb +67 -0
  457. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_content.rb +43 -0
  458. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_decl.rb +19 -0
  459. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_decl.rb +36 -0
  460. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_reference.rb +19 -0
  461. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/namespace.rb +44 -0
  462. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/node.rb +559 -0
  463. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/node_set.rb +150 -0
  464. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/processing_instruction.rb +20 -0
  465. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/reader.rb +236 -0
  466. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/relax_ng.rb +85 -0
  467. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser.rb +143 -0
  468. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser_context.rb +79 -0
  469. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/push_parser.rb +51 -0
  470. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/schema.rb +109 -0
  471. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/syntax_error.rb +98 -0
  472. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/text.rb +18 -0
  473. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath.rb +9 -0
  474. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath_context.rb +153 -0
  475. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xslt/stylesheet.rb +77 -0
  476. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html.rb +35 -0
  477. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/builder.rb +35 -0
  478. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document.rb +209 -0
  479. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document_fragment.rb +41 -0
  480. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/element_description.rb +23 -0
  481. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/entity_lookup.rb +13 -0
  482. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser.rb +52 -0
  483. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser_context.rb +16 -0
  484. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/nokogiri.so +0 -0
  485. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/syntax_error.rb +4 -0
  486. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version.rb +43 -0
  487. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version_warning.rb +14 -0
  488. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml.rb +67 -0
  489. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/attr.rb +14 -0
  490. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/attribute_decl.rb +18 -0
  491. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/builder.rb +418 -0
  492. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/cdata.rb +11 -0
  493. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/character_data.rb +7 -0
  494. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document.rb +218 -0
  495. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document_fragment.rb +84 -0
  496. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/dtd.rb +22 -0
  497. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_content.rb +36 -0
  498. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_decl.rb +13 -0
  499. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/entity_decl.rb +19 -0
  500. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/namespace.rb +13 -0
  501. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node.rb +891 -0
  502. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node/save_options.rb +52 -0
  503. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node_set.rb +350 -0
  504. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/notation.rb +6 -0
  505. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/parse_options.rb +93 -0
  506. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp.rb +2 -0
  507. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/character_data.rb +18 -0
  508. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/node.rb +56 -0
  509. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/processing_instruction.rb +8 -0
  510. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/reader.rb +112 -0
  511. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/relax_ng.rb +32 -0
  512. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax.rb +4 -0
  513. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/document.rb +164 -0
  514. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser.rb +115 -0
  515. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser_context.rb +16 -0
  516. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/push_parser.rb +60 -0
  517. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/schema.rb +63 -0
  518. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/syntax_error.rb +47 -0
  519. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/text.rb +9 -0
  520. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath.rb +10 -0
  521. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath/syntax_error.rb +11 -0
  522. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath_context.rb +16 -0
  523. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xslt.rb +52 -0
  524. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xslt/stylesheet.rb +25 -0
  525. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/xsd/xmlparser/nokogiri.rb +90 -0
  526. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/tasks/cross_compile.rb +173 -0
  527. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/tasks/test.rb +94 -0
  528. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_nthiness.rb +159 -0
  529. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_parser.rb +303 -0
  530. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_tokenizer.rb +198 -0
  531. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/css/test_xpath_visitor.rb +85 -0
  532. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/decorators/test_slop.rb +16 -0
  533. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/ffi/test_document.rb +35 -0
  534. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/2ch.html +108 -0
  535. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/address_book.rlx +12 -0
  536. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/address_book.xml +10 -0
  537. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/bar/bar.xsd +4 -0
  538. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/dont_hurt_em_why.xml +422 -0
  539. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/encoding.html +82 -0
  540. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/encoding.xhtml +84 -0
  541. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/exslt.xml +8 -0
  542. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/exslt.xslt +35 -0
  543. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/foo/foo.xsd +4 -0
  544. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/po.xml +32 -0
  545. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/po.xsd +66 -0
  546. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/shift_jis.html +10 -0
  547. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/shift_jis.xml +5 -0
  548. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/snuggles.xml +3 -0
  549. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/staff.dtd +10 -0
  550. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/staff.xml +59 -0
  551. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/staff.xslt +32 -0
  552. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/tlm.html +850 -0
  553. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/files/valid_bar.xml +2 -0
  554. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/helper.rb +171 -0
  555. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/sax/test_parser.rb +119 -0
  556. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/sax/test_parser_context.rb +48 -0
  557. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_builder.rb +164 -0
  558. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_document.rb +453 -0
  559. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_document_encoding.rb +123 -0
  560. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_document_fragment.rb +253 -0
  561. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_element_description.rb +98 -0
  562. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_named_characters.rb +14 -0
  563. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_node.rb +190 -0
  564. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/html/test_node_encoding.rb +27 -0
  565. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_convert_xpath.rb +135 -0
  566. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_css_cache.rb +45 -0
  567. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_encoding_handler.rb +46 -0
  568. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_memory_leak.rb +107 -0
  569. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_nokogiri.rb +138 -0
  570. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_reader.rb +421 -0
  571. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_soap4r_sax.rb +52 -0
  572. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/test_xslt_transforms.rb +193 -0
  573. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/node/test_save_options.rb +20 -0
  574. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/node/test_subclass.rb +44 -0
  575. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/sax/test_parser.rb +331 -0
  576. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/sax/test_parser_context.rb +113 -0
  577. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/sax/test_push_parser.rb +156 -0
  578. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_attr.rb +65 -0
  579. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_attribute_decl.rb +82 -0
  580. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_builder.rb +210 -0
  581. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_cdata.rb +50 -0
  582. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_comment.rb +29 -0
  583. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document.rb +670 -0
  584. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document_encoding.rb +26 -0
  585. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document_fragment.rb +192 -0
  586. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_dtd.rb +97 -0
  587. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_dtd_encoding.rb +33 -0
  588. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_element_content.rb +56 -0
  589. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_element_decl.rb +73 -0
  590. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_entity_decl.rb +120 -0
  591. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_entity_reference.rb +21 -0
  592. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_namespace.rb +68 -0
  593. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node.rb +906 -0
  594. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_attributes.rb +34 -0
  595. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_encoding.rb +107 -0
  596. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_reparenting.rb +321 -0
  597. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_node_set.rb +708 -0
  598. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_parse_options.rb +52 -0
  599. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_processing_instruction.rb +30 -0
  600. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_reader_encoding.rb +126 -0
  601. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_relax_ng.rb +60 -0
  602. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_schema.rb +94 -0
  603. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_syntax_error.rb +12 -0
  604. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_text.rb +47 -0
  605. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_unparented_node.rb +381 -0
  606. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_xpath.rb +237 -0
  607. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xslt/test_custom_functions.rb +94 -0
  608. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.gitignore +7 -0
  609. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.rspec +1 -0
  610. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.travis.yml +8 -0
  611. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/CHANGELOG.md +90 -0
  612. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/Gemfile +4 -0
  613. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/LICENSE +20 -0
  614. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/README.md +64 -0
  615. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/Rakefile +16 -0
  616. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/benchmark/benchmark.rb +19 -0
  617. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/benchmark/soap_response.xml +266 -0
  618. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori.rb +59 -0
  619. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext.rb +3 -0
  620. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/hash.rb +70 -0
  621. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/object.rb +13 -0
  622. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/string.rb +21 -0
  623. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/parser.rb +51 -0
  624. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/parser/nokogiri.rb +45 -0
  625. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/parser/rexml.rb +38 -0
  626. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/string_io_file.rb +7 -0
  627. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/string_with_attributes.rb +7 -0
  628. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/version.rb +5 -0
  629. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/xml_utility_node.rb +230 -0
  630. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/nori.gemspec +24 -0
  631. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/core_ext/hash_spec.rb +60 -0
  632. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/core_ext/object_spec.rb +19 -0
  633. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/core_ext/string_spec.rb +33 -0
  634. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/nori_spec.rb +641 -0
  635. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/parser_spec.rb +37 -0
  636. data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/spec_helper.rb +2 -0
  637. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/README +25 -0
  638. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/Rakefile +68 -0
  639. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/examples/http.rb +86 -0
  640. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/examples/imap.rb +73 -0
  641. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/examples/smtp.rb +94 -0
  642. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/lib/net/ntlm.rb +775 -0
  643. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/lib/net/ntlm_http.rb +87 -0
  644. data/search_biomodel/ruby/1.8/gems/pyu-ntlm-http-0.1.3.1/test/function_test.rb +111 -0
  645. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/COPYING +18 -0
  646. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/KNOWN-ISSUES +21 -0
  647. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/README +425 -0
  648. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/Rakefile +100 -0
  649. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/SPEC +171 -0
  650. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/bin/rackup +4 -0
  651. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/contrib/rack_logo.svg +111 -0
  652. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/example/lobster.ru +4 -0
  653. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/example/protectedlobster.rb +14 -0
  654. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/example/protectedlobster.ru +8 -0
  655. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack.rb +82 -0
  656. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/abstract/handler.rb +37 -0
  657. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/abstract/request.rb +43 -0
  658. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/basic.rb +58 -0
  659. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/md5.rb +129 -0
  660. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/nonce.rb +51 -0
  661. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/params.rb +53 -0
  662. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/auth/digest/request.rb +40 -0
  663. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/backports/uri/common.rb +64 -0
  664. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/builder.rb +137 -0
  665. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/cascade.rb +41 -0
  666. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/chunked.rb +56 -0
  667. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/commonlogger.rb +49 -0
  668. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/conditionalget.rb +66 -0
  669. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/config.rb +15 -0
  670. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/content_length.rb +33 -0
  671. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/content_type.rb +23 -0
  672. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/deflater.rb +99 -0
  673. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/directory.rb +157 -0
  674. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/etag.rb +60 -0
  675. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/file.rb +125 -0
  676. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler.rb +94 -0
  677. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/cgi.rb +61 -0
  678. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/evented_mongrel.rb +8 -0
  679. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/fastcgi.rb +98 -0
  680. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/lsws.rb +61 -0
  681. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/mongrel.rb +100 -0
  682. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/scgi.rb +67 -0
  683. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/swiftiplied_mongrel.rb +8 -0
  684. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/thin.rb +24 -0
  685. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/handler/webrick.rb +80 -0
  686. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/head.rb +19 -0
  687. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/lint.rb +567 -0
  688. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/lobster.rb +65 -0
  689. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/lock.rb +44 -0
  690. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/logger.rb +18 -0
  691. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/methodoverride.rb +27 -0
  692. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/mime.rb +210 -0
  693. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/mock.rb +185 -0
  694. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart.rb +34 -0
  695. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart/generator.rb +93 -0
  696. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart/parser.rb +164 -0
  697. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/multipart/uploaded_file.rb +30 -0
  698. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/nulllogger.rb +18 -0
  699. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/recursive.rb +61 -0
  700. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/reloader.rb +109 -0
  701. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/request.rb +309 -0
  702. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/response.rb +152 -0
  703. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/rewindable_input.rb +104 -0
  704. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/runtime.rb +27 -0
  705. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/sendfile.rb +140 -0
  706. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/server.rb +323 -0
  707. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/abstract/id.rb +351 -0
  708. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/cookie.rb +152 -0
  709. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/memcache.rb +93 -0
  710. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/pool.rb +79 -0
  711. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/showexceptions.rb +378 -0
  712. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/showstatus.rb +113 -0
  713. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/static.rb +58 -0
  714. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/urlmap.rb +60 -0
  715. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/utils.rb +480 -0
  716. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/rack.gemspec +37 -0
  717. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/anything.rb +5 -0
  718. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/comment.ru +4 -0
  719. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/end.ru +3 -0
  720. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/builder/options.ru +2 -0
  721. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/lighttpd.conf +25 -0
  722. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/rackup_stub.rb +6 -0
  723. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/sample_rackup.ru +5 -0
  724. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/test +9 -0
  725. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/test.fcgi +8 -0
  726. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/cgi/test.ru +5 -0
  727. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/gemloader.rb +6 -0
  728. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/bad_robots +259 -0
  729. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/binary +0 -0
  730. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/content_type_and_no_filename +6 -0
  731. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/empty +10 -0
  732. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/fail_16384_nofile +814 -0
  733. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/file1.txt +1 -0
  734. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_and_modification_param +7 -0
  735. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_escaped_quotes +6 -0
  736. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_escaped_quotes_and_modification_param +7 -0
  737. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_percent_escaped_quotes +6 -0
  738. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/filename_with_unescaped_quotes +6 -0
  739. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/ie +6 -0
  740. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/mixed_files +21 -0
  741. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/nested +10 -0
  742. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/none +9 -0
  743. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/semicolon +6 -0
  744. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/text +15 -0
  745. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/multipart/webkit +32 -0
  746. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/rackup/config.ru +31 -0
  747. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/registering_handler/rack/handler/registering_myself.rb +8 -0
  748. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_auth_basic.rb +70 -0
  749. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_auth_digest.rb +244 -0
  750. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_builder.rb +152 -0
  751. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_cascade.rb +45 -0
  752. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_cgi.rb +102 -0
  753. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_chunked.rb +60 -0
  754. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_commonlogger.rb +56 -0
  755. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_conditionalget.rb +86 -0
  756. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_config.rb +23 -0
  757. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_content_length.rb +73 -0
  758. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_content_type.rb +29 -0
  759. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_deflater.rb +169 -0
  760. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_directory.rb +57 -0
  761. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_etag.rb +82 -0
  762. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_fastcgi.rb +107 -0
  763. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_file.rb +122 -0
  764. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_handler.rb +59 -0
  765. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_head.rb +30 -0
  766. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_lint.rb +515 -0
  767. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_lobster.rb +43 -0
  768. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_lock.rb +142 -0
  769. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_logger.rb +28 -0
  770. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_methodoverride.rb +58 -0
  771. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_mock.rb +241 -0
  772. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_mongrel.rb +182 -0
  773. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_multipart.rb +287 -0
  774. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_nulllogger.rb +12 -0
  775. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_recursive.rb +69 -0
  776. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_request.rb +813 -0
  777. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_response.rb +246 -0
  778. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_rewindable_input.rb +118 -0
  779. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_runtime.rb +39 -0
  780. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_sendfile.rb +83 -0
  781. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_server.rb +74 -0
  782. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_abstract_id.rb +43 -0
  783. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_cookie.rb +210 -0
  784. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_memcache.rb +289 -0
  785. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_session_pool.rb +200 -0
  786. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_showexceptions.rb +87 -0
  787. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_showstatus.rb +79 -0
  788. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_static.rb +56 -0
  789. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_thin.rb +86 -0
  790. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_urlmap.rb +213 -0
  791. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_utils.rb +430 -0
  792. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/spec_webrick.rb +141 -0
  793. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/testrequest.rb +78 -0
  794. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/unregistered_handler/rack/handler/unregistered.rb +7 -0
  795. data/search_biomodel/ruby/1.8/gems/rack-1.3.0/test/unregistered_handler/rack/handler/unregistered_long_one.rb +7 -0
  796. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/.gemtest +0 -0
  797. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/CHANGES +509 -0
  798. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/MIT-LICENSE +21 -0
  799. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/README.rdoc +200 -0
  800. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/RRR +9 -0
  801. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/Rakefile +405 -0
  802. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/TODO +20 -0
  803. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/bin/rake +32 -0
  804. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/install.rb +90 -0
  805. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake.rb +65 -0
  806. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/alt_system.rb +109 -0
  807. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/application.rb +589 -0
  808. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/classic_namespace.rb +9 -0
  809. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/clean.rb +31 -0
  810. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/cloneable.rb +25 -0
  811. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/compositepublisher.rb +21 -0
  812. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/ftptools.rb +150 -0
  813. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/publisher.rb +69 -0
  814. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/rubyforgepublisher.rb +16 -0
  815. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/sshpublisher.rb +45 -0
  816. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/contrib/sys.rb +191 -0
  817. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/default_loader.rb +10 -0
  818. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/dsl_definition.rb +167 -0
  819. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/early_time.rb +18 -0
  820. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/core.rb +27 -0
  821. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/module.rb +39 -0
  822. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/string.rb +167 -0
  823. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ext/time.rb +14 -0
  824. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_creation_task.rb +24 -0
  825. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_list.rb +403 -0
  826. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_task.rb +47 -0
  827. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_utils.rb +112 -0
  828. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/file_utils_ext.rb +142 -0
  829. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/gempackagetask.rb +13 -0
  830. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/invocation_chain.rb +51 -0
  831. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/invocation_exception_mixin.rb +16 -0
  832. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/loaders/makefile.rb +40 -0
  833. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/multi_task.rb +16 -0
  834. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/name_space.rb +25 -0
  835. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/packagetask.rb +185 -0
  836. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/pathmap.rb +1 -0
  837. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/pseudo_status.rb +24 -0
  838. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rake_module.rb +29 -0
  839. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rake_test_loader.rb +13 -0
  840. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rdoctask.rb +230 -0
  841. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/ruby182_test_unit_fix.rb +25 -0
  842. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/rule_recursion_overflow_error.rb +20 -0
  843. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/runtest.rb +21 -0
  844. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task.rb +327 -0
  845. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task_argument_error.rb +7 -0
  846. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task_arguments.rb +74 -0
  847. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/task_manager.rb +307 -0
  848. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/tasklib.rb +22 -0
  849. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/testtask.rb +191 -0
  850. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/version.rb +10 -0
  851. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/lib/rake/win32.rb +55 -0
  852. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/check_expansion.rb +5 -0
  853. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/check_no_expansion.rb +5 -0
  854. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/access/Rakefile +35 -0
  855. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/chains/Rakefile +15 -0
  856. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/comments/Rakefile +18 -0
  857. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/default/Rakefile +17 -0
  858. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/deprecated_import/Rakefile +1 -0
  859. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/dryrun/Rakefile +22 -0
  860. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/extra/Rakefile +1 -0
  861. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/file_creation_task/Rakefile +31 -0
  862. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/imports/Rakefile +19 -0
  863. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/imports/deps.mf +1 -0
  864. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/multidesc/Rakefile +15 -0
  865. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/namespace/Rakefile +64 -0
  866. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/rakelib/test1.rb +4 -0
  867. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/rbext/rakefile.rb +3 -0
  868. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/sample.mf +14 -0
  869. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/statusreturn/Rakefile +6 -0
  870. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/unittest/Rakefile +1 -0
  871. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/data/verbose/Rakefile +34 -0
  872. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/file_creation.rb +34 -0
  873. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/helper.rb +44 -0
  874. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/in_environment.rb +35 -0
  875. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/reqfile.rb +3 -0
  876. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/reqfile2.rb +3 -0
  877. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/shellcommand.rb +3 -0
  878. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake.rb +38 -0
  879. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_application.rb +364 -0
  880. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_application_options.rb +382 -0
  881. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_clean.rb +12 -0
  882. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_definitions.rb +80 -0
  883. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_directory_task.rb +55 -0
  884. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_dsl.rb +73 -0
  885. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_early_time.rb +31 -0
  886. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_extension.rb +59 -0
  887. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_creation_task.rb +62 -0
  888. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_list.rb +633 -0
  889. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_list_path_map.rb +8 -0
  890. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_task.rb +104 -0
  891. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_utils.rb +252 -0
  892. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_ftp_file.rb +59 -0
  893. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_functional.rb +468 -0
  894. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_invocation_chain.rb +52 -0
  895. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_makefile_loader.rb +23 -0
  896. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_multi_task.rb +51 -0
  897. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_name_space.rb +43 -0
  898. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_package_task.rb +78 -0
  899. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_path_map.rb +157 -0
  900. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_path_map_explode.rb +31 -0
  901. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_path_map_partial.rb +18 -0
  902. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_pseudo_status.rb +20 -0
  903. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_rdoc_task.rb +81 -0
  904. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_require.rb +35 -0
  905. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_rules.rb +346 -0
  906. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task.rb +271 -0
  907. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_argument_parsing.rb +116 -0
  908. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_arguments.rb +86 -0
  909. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_lib.rb +9 -0
  910. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_manager.rb +145 -0
  911. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_manager_argument_resolution.rb +36 -0
  912. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_task_with_arguments.rb +162 -0
  913. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_test_task.rb +122 -0
  914. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_top_level_functions.rb +76 -0
  915. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_win32.rb +83 -0
  916. data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_sys.rb +20 -0
  917. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/BLURB +111 -0
  918. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/LICENSE +53 -0
  919. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/Rakefile +103 -0
  920. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/THANKS +110 -0
  921. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/bin/rcov +522 -0
  922. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/editor-extensions/rcov.el +131 -0
  923. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/editor-extensions/rcov.vim +38 -0
  924. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.8/callsite.c +216 -0
  925. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.8/rcovrt.c +294 -0
  926. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/callsite.c +234 -0
  927. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/rcovrt.c +264 -0
  928. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/Makefile +157 -0
  929. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/callsite.o +0 -0
  930. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/extconf.rb +21 -0
  931. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/rcovrt.o +0 -0
  932. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/rcovrt.so +0 -0
  933. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov.rb +33 -0
  934. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/call_site_analyzer.rb +225 -0
  935. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/code_coverage_analyzer.rb +271 -0
  936. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/coverage_info.rb +36 -0
  937. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/differential_analyzer.rb +116 -0
  938. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/file_statistics.rb +355 -0
  939. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters.rb +13 -0
  940. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/base_formatter.rb +174 -0
  941. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/failure_report.rb +15 -0
  942. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/full_text_report.rb +48 -0
  943. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_coverage.rb +274 -0
  944. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_erb_template.rb +62 -0
  945. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_coverage_diff.rb +193 -0
  946. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_report.rb +32 -0
  947. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_summary.rb +11 -0
  948. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/lowlevel.rb +146 -0
  949. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/rcovtask.rb +156 -0
  950. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/detail.html.erb +64 -0
  951. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/index.html.erb +93 -0
  952. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery-1.3.2.min.js +19 -0
  953. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery.tablesorter.min.js +15 -0
  954. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/print.css +12 -0
  955. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/rcov.js +42 -0
  956. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/screen.css +270 -0
  957. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/version.rb +10 -0
  958. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcovrt.so +0 -0
  959. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/setup.rb +1588 -0
  960. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_01.rb +7 -0
  961. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_02.rb +5 -0
  962. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_03.rb +20 -0
  963. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_04.rb +10 -0
  964. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-new.rb +17 -0
  965. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-old.rb +13 -0
  966. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05.rb +17 -0
  967. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_06.rb +8 -0
  968. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/call_site_analyzer_test.rb +171 -0
  969. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/code_coverage_analyzer_test.rb +220 -0
  970. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-all.out +7 -0
  971. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-diff.out +11 -0
  972. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-original.out +5 -0
  973. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-no-color.out +12 -0
  974. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff.out +12 -0
  975. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/gcc-text.out +10 -0
  976. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.html +651 -0
  977. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.rb +28 -0
  978. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_04_rb.html +641 -0
  979. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/file_statistics_test.rb +471 -0
  980. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/functional_test.rb +91 -0
  981. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/test_helper.rb +4 -0
  982. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/turn_off_rcovrt.rb +4 -0
  983. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.gitignore +9 -0
  984. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec +1 -0
  985. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml +7 -0
  986. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts +2 -0
  987. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md +533 -0
  988. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile +4 -0
  989. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE +20 -0
  990. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md +39 -0
  991. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile +40 -0
  992. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon.rb +14 -0
  993. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb +161 -0
  994. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/hash.rb +70 -0
  995. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb +14 -0
  996. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb +51 -0
  997. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/time.rb +22 -0
  998. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb +6 -0
  999. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb +83 -0
  1000. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb +42 -0
  1001. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap.rb +24 -0
  1002. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb +59 -0
  1003. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/request.rb +61 -0
  1004. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb +85 -0
  1005. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/xml.rb +184 -0
  1006. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/version.rb +5 -0
  1007. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/document.rb +112 -0
  1008. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb +96 -0
  1009. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/request.rb +35 -0
  1010. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsse.rb +156 -0
  1011. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/savon.gemspec +30 -0
  1012. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/gzip/message.gz +0 -0
  1013. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/another_soap_fault.xml +14 -0
  1014. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/authentication.xml +14 -0
  1015. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/header.xml +13 -0
  1016. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/list.xml +18 -0
  1017. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/multi_ref.xml +39 -0
  1018. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault.xml +8 -0
  1019. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault12.xml +18 -0
  1020. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/authentication.xml +63 -0
  1021. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/geotrust.xml +156 -0
  1022. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/namespaced_actions.xml +307 -0
  1023. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/no_namespace.xml +115 -0
  1024. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/soap12.xml +11 -0
  1025. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/two_bindings.xml +25 -0
  1026. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/client_spec.rb +354 -0
  1027. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/hash_spec.rb +121 -0
  1028. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/object_spec.rb +19 -0
  1029. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/string_spec.rb +57 -0
  1030. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/time_spec.rb +13 -0
  1031. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/http/error_spec.rb +52 -0
  1032. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/savon_spec.rb +85 -0
  1033. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/fault_spec.rb +89 -0
  1034. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/request_spec.rb +45 -0
  1035. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/response_spec.rb +181 -0
  1036. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/xml_spec.rb +341 -0
  1037. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap_spec.rb +21 -0
  1038. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/document_spec.rb +132 -0
  1039. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/parser_spec.rb +107 -0
  1040. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/request_spec.rb +15 -0
  1041. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsse_spec.rb +232 -0
  1042. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/spec_helper.rb +14 -0
  1043. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/endpoint.rb +25 -0
  1044. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/fixture.rb +37 -0
  1045. data/search_biomodel/ruby/1.8/specifications/builder-3.0.0.gemspec +36 -0
  1046. data/search_biomodel/ruby/1.8/specifications/git-1.2.5.gemspec +30 -0
  1047. data/search_biomodel/ruby/1.8/specifications/gyoku-0.4.4.gemspec +41 -0
  1048. data/search_biomodel/ruby/1.8/specifications/httpi-0.9.4.gemspec +49 -0
  1049. data/search_biomodel/ruby/1.8/specifications/jeweler-1.6.2.gemspec +79 -0
  1050. data/search_biomodel/ruby/1.8/specifications/nokogiri-1.4.6.gemspec +53 -0
  1051. data/search_biomodel/ruby/1.8/specifications/nori-1.0.1.gemspec +38 -0
  1052. data/search_biomodel/ruby/1.8/specifications/pyu-ntlm-http-0.1.3.1.gemspec +31 -0
  1053. data/search_biomodel/ruby/1.8/specifications/rack-1.3.0.gemspec +57 -0
  1054. data/search_biomodel/ruby/1.8/specifications/rake-0.9.2.gemspec +43 -0
  1055. data/search_biomodel/ruby/1.8/specifications/rcov-0.9.9.gemspec +34 -0
  1056. data/search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec +55 -0
  1057. data/test/test_search_biomodel.rb +29 -4
  1058. metadata +1071 -36
  1059. data/test.rb +0 -1
@@ -0,0 +1,471 @@
1
+ require File.dirname(__FILE__) + '/test_helper'
2
+
3
+ class TestFileStatistics < Test::Unit::TestCase
4
+ def test_trailing_end_is_inferred
5
+ verify_everything_marked "trailing end", <<-EOF
6
+ 1 class X
7
+ 1 def foo
8
+ 2 "foo"
9
+ 0 end
10
+ 0 end
11
+ EOF
12
+ verify_everything_marked "trailing end with comments", <<-EOF
13
+ 1 class X
14
+ 1 def foo
15
+ 2 "foo"
16
+ 0 end
17
+ 0 # foo bar
18
+ 0 =begin
19
+ 0 ....
20
+ 0 =end
21
+ 0 end
22
+ EOF
23
+ end
24
+
25
+ def test_begin_ensure_else_case_are_inferred
26
+ verify_everything_marked "begin ensure else case", <<-EOF
27
+ 0 begin
28
+ # bleh
29
+ 2 puts a
30
+ 0 begin
31
+ 2 raise "foo"
32
+ 0 rescue Exception => e
33
+ 2 puts b
34
+ 0 ensure
35
+ 2 puts c
36
+ 0 end
37
+ 2 if a()
38
+ 1 b
39
+ 0 else
40
+ 1 c
41
+ 0 end
42
+ 0 case
43
+ 2 when bar =~ /foo/
44
+ 1 puts "bar"
45
+ 0 else
46
+ 1 puts "baz"
47
+ 0 end
48
+ 0 end
49
+ EOF
50
+ end
51
+
52
+ def test_rescue_is_inferred
53
+ verify_everything_marked "rescue", <<-EOF
54
+ 0 begin
55
+ 1 foo
56
+ 0 rescue
57
+ 1 puts "bar"
58
+ 0 end
59
+ EOF
60
+ end
61
+
62
+ def test_code_metrics_are_computed_correctly
63
+ lines, coverage, counts = code_info_from_string <<-EOF
64
+ 1 a = 1
65
+ 0 # this is a comment
66
+ 1 if bar
67
+ 0 b = 2
68
+ 0 end
69
+ 0 =begin
70
+ 0 this too
71
+ 0 bleh
72
+ 0 =end
73
+ 0 puts <<EOF
74
+ 0 bleh
75
+ 0 EOF
76
+ 3 c.times{ i += 1}
77
+ EOF
78
+ sf = Rcov::FileStatistics.new("metrics", lines, counts)
79
+ assert_in_delta(0.307, sf.total_coverage, 0.01)
80
+ assert_in_delta(0.375, sf.code_coverage, 0.01)
81
+ assert_equal(8, sf.num_code_lines)
82
+ assert_equal(13, sf.num_lines)
83
+ assert_equal([true, :inferred, true, false, false, false, false, false,
84
+ false, false, false, false, true], sf.coverage.to_a)
85
+ end
86
+
87
+ def test_merge
88
+ lines, coverage, counts = code_info_from_string <<-EOF
89
+ 1 a = 1
90
+ 1 if bar
91
+ 0 b = 2
92
+ 0 end
93
+ 1 puts <<EOF
94
+ 0 bleh
95
+ 0 EOF
96
+ 3 c.times{ i += 1}
97
+ EOF
98
+ sf = Rcov::FileStatistics.new("merge", lines, counts)
99
+ lines, coverage, counts = code_info_from_string <<-EOF
100
+ 1 a = 1
101
+ 1 if bar
102
+ 1 b = 2
103
+ 0 end
104
+ 1 puts <<EOF
105
+ 0 bleh
106
+ 0 EOF
107
+ 10 c.times{ i += 1}
108
+ EOF
109
+ sf2 = Rcov::FileStatistics.new("merge", lines, counts)
110
+ expected = [true, true, true, :inferred, true, :inferred, :inferred, true]
111
+ assert_equal(expected, sf2.coverage.to_a)
112
+ sf.merge(sf2.lines, sf2.coverage, sf2.counts)
113
+ assert_equal(expected, sf.coverage.to_a)
114
+ assert_equal([2, 2, 1, 0, 2, 0, 0, 13], sf.counts)
115
+ end
116
+
117
+ def test_last_comment_block_is_marked
118
+ verify_everything_marked "last comment block", <<-EOF
119
+ 1 a = 1
120
+ 1 b = 1
121
+ 0 # foo
122
+ 0 # bar baz
123
+ EOF
124
+ verify_everything_marked "last comment block, =begin/=end", <<-EOF
125
+ 1 a = 1
126
+ 2 b = 1
127
+ 0 # fooo
128
+ 0 =begin
129
+ 0 bar baz
130
+ 0 =end
131
+ EOF
132
+ verify_everything_marked "last comment block, __END__", <<-EOF
133
+ 1 a = 1
134
+ 2 b = 1
135
+ 0 # fooo
136
+ 0 =begin
137
+ 0 bar baz
138
+ 0 =end
139
+ __END__
140
+ EOF
141
+ end
142
+
143
+ def test_heredocs_basic
144
+ verify_everything_marked "heredocs-basic.rb", <<-EOF
145
+ 1 puts 1 + 1
146
+ 1 puts <<HEREDOC
147
+ 0 first line of the heredoc
148
+ 0 not marked
149
+ 0 but should be
150
+ 0 HEREDOC
151
+ 1 puts 1
152
+ EOF
153
+ verify_everything_marked "squote", <<-EOF
154
+ 1 puts <<'HEREDOC'
155
+ 0 first line of the heredoc
156
+ 0 HEREDOC
157
+ EOF
158
+ verify_everything_marked "dquote", <<-EOF
159
+ 1 puts <<"HEREDOC"
160
+ 0 first line of the heredoc
161
+ 0 HEREDOC
162
+ EOF
163
+ verify_everything_marked "xquote", <<-EOF
164
+ 1 puts <<`HEREDOC`
165
+ 0 first line of the heredoc
166
+ 0 HEREDOC
167
+ EOF
168
+ verify_everything_marked "stuff-after-heredoc", <<-EOF
169
+ 1 full_message = build_message(msg, <<EOT, object1, object2)
170
+ 0 <?> and <?> do not contain the same elements
171
+ 0 EOT
172
+ EOF
173
+ end
174
+
175
+ def test_heredocs_multiple
176
+ verify_everything_marked "multiple-unquoted", <<-EOF
177
+ 1 puts <<HEREDOC, <<HERE2
178
+ 0 first line of the heredoc
179
+ 0 HEREDOC
180
+ 0 second heredoc
181
+ 0 HERE2
182
+ EOF
183
+ verify_everything_marked "multiple-quoted", <<-EOF
184
+ 1 puts <<'HEREDOC', <<`HERE2`, <<"HERE3"
185
+ 0 first line of the heredoc
186
+ 0 HEREDOC
187
+ 0 second heredoc
188
+ 0 HERE2
189
+ 0 dsfdsfffd
190
+ 0 HERE3
191
+ EOF
192
+ verify_everything_marked "same-identifier", <<-EOF
193
+ 1 puts <<H, <<H
194
+ 0 foo
195
+ 0 H
196
+ 0 bar
197
+ 0 H
198
+ EOF
199
+ verify_everything_marked "stuff-after-heredoc", <<-EOF
200
+ 1 full_message = build_message(msg, <<EOT, object1, object2, <<EOT)
201
+ 0 <?> and <?> do not contain the same elements
202
+ 0 EOT
203
+ 0 <?> and <?> are foo bar baz
204
+ 0 EOT
205
+ EOF
206
+ end
207
+ def test_ignore_non_heredocs
208
+ verify_marked_exactly "bitshift-numeric", [0], <<-EOF
209
+ 1 puts 1<<2
210
+ 0 return if foo
211
+ 0 do_stuff()
212
+ 0 2
213
+ EOF
214
+ verify_marked_exactly "bitshift-symbolic", [0], <<-EOF
215
+ 1 puts 1<<LSHIFT
216
+ 0 return if bar
217
+ 0 do_stuff()
218
+ 0 LSHIFT
219
+ EOF
220
+ verify_marked_exactly "bitshift-symbolic-multi", 0..3, <<-EOF
221
+ 1 puts <<EOF, 1<<LSHIFT
222
+ 0 random text
223
+ 0 EOF
224
+ 1 return if bar
225
+ 0 puts "foo"
226
+ 0 LSHIFT
227
+ EOF
228
+ verify_marked_exactly "bitshift-symshift-evil", 0..2, <<-EOF
229
+ 1 foo = 1
230
+ 1 puts foo<<CONS
231
+ 1 return if bar
232
+ 0 foo + baz
233
+ EOF
234
+ end
235
+
236
+ def test_heredocs_with_interpolation_alone_in_method
237
+ verify_everything_marked "lonely heredocs with interpolation", <<-'EOS'
238
+ 1 def to_s
239
+ 0 <<-EOF
240
+ 1 #{name}
241
+ 0 #{street}
242
+ 0 #{city}, #{state}
243
+ 0 #{zip}
244
+ 0 EOF
245
+ 0 end
246
+ EOS
247
+ end
248
+
249
+ def test_handle_multiline_expressions
250
+ verify_everything_marked "expression", <<-EOF
251
+ 1 puts 1, 2.
252
+ 0 abs +
253
+ 0 1 -
254
+ 0 1 *
255
+ 0 1 /
256
+ 0 1, 1 <
257
+ 0 2, 3 >
258
+ 0 4 %
259
+ 0 3 &&
260
+ 0 true ||
261
+ 0 foo <<
262
+ 0 bar(
263
+ 0 baz[
264
+ 0 {
265
+ 0 1,2}] =
266
+ 0 1 )
267
+ EOF
268
+ verify_everything_marked "boolean expression", <<-EOF
269
+ 1 x = (foo and
270
+ 0 bar) or
271
+ 0 baz
272
+ EOF
273
+ verify_marked_exactly "code blocks", [0, 3, 6], <<-EOF
274
+ 1 x = foo do # stuff
275
+ 0 baz
276
+ 0 end
277
+ 1 bar do |x|
278
+ 0 baz
279
+ 0 end
280
+ 1 bar {|a, b| # bleh | +1
281
+ 0 baz
282
+ 0 }
283
+ EOF
284
+ verify_everything_marked "escaped linebreaks", <<-EOF
285
+ 1 def t2
286
+ 0 puts \\
287
+ 1 "foo"
288
+ 0 end
289
+ 0 end
290
+ EOF
291
+ end
292
+
293
+ def test_handle_multiline_blocks_first_not_marked
294
+ verify_everything_marked "multiline block first not marked", <<-'EOF'
295
+ 1 blah = Array.new
296
+ 1 10.times do
297
+ 0 blah << lambda do |f|
298
+ 1 puts "I should say #{f}!"
299
+ 0 end
300
+ 0 end
301
+ EOF
302
+ end
303
+
304
+ def test_handle_multiline_blocks_last_line_not_marked
305
+ verify_everything_marked "multiline block last not marked", <<-'EOF'
306
+ 1 blee = [1, 2, 3]
307
+ 0 blee.map! do |e|
308
+ 1 [e, e]
309
+ 0 end.flatten!
310
+ 1 p blee
311
+ EOF
312
+ end
313
+
314
+ def test_handle_multiline_data_with_trailing_stuff_on_last_line
315
+ verify_everything_marked "multiline data hash", <<-'EOF'
316
+ 1 @review = Review.new({
317
+ 0 :product_id => params[:id],
318
+ 0 :user => current_user
319
+ 0 }.merge(params[:review])) #red
320
+ 1 @review.save
321
+ EOF
322
+ end
323
+
324
+ def test_handle_multiline_expression_1st_line_ends_in_block_header
325
+ # excerpt taken from mongrel/handlers.rb
326
+ verify_everything_marked "multiline with block starting on 1st", <<-EOF
327
+ 1 uris = listener.classifier.handler_map
328
+ 0 results << table("handlers", uris.map {|uri,handlers|
329
+ 1 [uri,
330
+ 0 "<pre>" +
331
+ 1 handlers.map {|h| h.class.to_s }.join("\n") +
332
+ 0 "</pre>"
333
+ 0 ]
334
+ 1 })
335
+ EOF
336
+ end
337
+
338
+ def test_handle_multiple_block_end_delimiters_in_empty_line
339
+ verify_everything_marked "multiline with }) delimiter, forward", <<-EOF
340
+ 1 assert(@c.config == {
341
+ 0 'host' => 'myhost.tld',
342
+ 0 'port' => 1234
343
+ 0 })
344
+ EOF
345
+ verify_everything_marked "multiline with }) delimiter, backwards", <<-EOF
346
+ 0 assert(@c.config == {
347
+ 0 'host' => 'myhost.tld',
348
+ 0 'port' => 1234
349
+ 1 })
350
+ EOF
351
+ end
352
+
353
+ STRING_DELIMITER_PAIRS = [
354
+ %w-%{ }-, %w-%q{ }-, %w-%Q{ }-, %w{%[ ]}, %w{%q[ ]},
355
+ %w{%( )}, %w{%Q( )}, %w{%Q[ ]}, %w{%q! !}, %w{%! !},
356
+ ]
357
+
358
+ def test_multiline_strings_basic
359
+ STRING_DELIMITER_PAIRS.each do |s_delim, e_delim|
360
+ verify_everything_marked "multiline strings, basic #{s_delim}", <<-EOF
361
+ 1 PATTERN_TEXT = #{s_delim}
362
+ 0 NUMBERS = 'one|two|three|four|five'
363
+ 0 ON_OFF = 'on|off'
364
+ 0 #{e_delim}
365
+ EOF
366
+ end
367
+ STRING_DELIMITER_PAIRS.each do |s_delim, e_delim|
368
+ verify_marked_exactly "multiline strings, escaped #{s_delim}", [0], <<-EOF
369
+ 1 PATTERN_TEXT = #{s_delim} foooo bar baz \\#{e_delim} baz #{e_delim}
370
+ 0 NUMBERS = 'one|two|three|four|five'
371
+ 0 ON_OFF = 'on|off'
372
+ EOF
373
+
374
+ verify_marked_exactly "multiline strings, #{s_delim}, interpolation",
375
+ [0], <<-EOF
376
+ 1 PATTERN_TEXT = #{s_delim} \#{#{s_delim} foo #{e_delim}} \\#{e_delim} baz #{e_delim}
377
+ 0 NUMBERS = 'one|two|three|four|five'
378
+ 0 ON_OFF = 'on|off'
379
+ EOF
380
+ end
381
+ end
382
+
383
+ def test_multiline_strings_escaped_delimiter
384
+ STRING_DELIMITER_PAIRS.each do |s_delim, e_delim|
385
+ verify_everything_marked "multiline, escaped #{s_delim}", <<-EOF
386
+ 1 PATTERN_TEXT = #{s_delim} foo \\#{e_delim}
387
+ 0 NUMBERS = 'one|two|three|four|five'
388
+ 0 ON_OFF = 'on|off'
389
+ 0 #{e_delim}
390
+ EOF
391
+ end
392
+ end
393
+
394
+ def test_handle_multiline_expressions_with_heredocs
395
+ verify_everything_marked "multiline and heredocs", <<-EOF
396
+ 1 puts <<EOF +
397
+ 0 testing
398
+ 0 one two three
399
+ 0 EOF
400
+ 0 somevar
401
+ EOF
402
+ end
403
+
404
+ def test_begin_end_comment_blocks
405
+ verify_everything_marked "=begin/=end", <<-EOF
406
+ 1 x = foo
407
+ 0 =begin
408
+ 0 return if bar(x)
409
+ 0 =end
410
+ 1 y = 1
411
+ EOF
412
+ end
413
+
414
+ def test_is_code_p
415
+ verify_is_code "basic", [true] + [false] * 5 + [true], <<-EOF
416
+ 1 x = foo
417
+ 0 =begin
418
+ 0 return if bar
419
+ 0 =end
420
+ 0 # foo
421
+ 0 # bar
422
+ 1 y = 1
423
+ EOF
424
+ end
425
+
426
+ def test_is_code_p_tricky_heredocs
427
+ verify_is_code "tricky heredocs", [true] * 4, <<-EOF
428
+ 2 x = foo <<EOF and return
429
+ 0 =begin
430
+ 0 EOF
431
+ 0 z = x + 1
432
+ EOF
433
+ end
434
+
435
+ def verify_is_code(testname, is_code_arr, str)
436
+ lines, coverage, counts = code_info_from_string str
437
+
438
+ sf = Rcov::FileStatistics.new(testname, lines, counts)
439
+ is_code_arr.each_with_index do |val,i|
440
+ assert_equal(val, sf.is_code?(i),
441
+ "Unable to detect =begin comments properly: #{lines[i].inspect}")
442
+ end
443
+ end
444
+
445
+ def verify_marked_exactly(testname, marked_indices, str)
446
+ lines, coverage, counts = code_info_from_string(str)
447
+
448
+ sf = Rcov::FileStatistics.new(testname, lines, counts)
449
+ lines.size.times do |i|
450
+ if marked_indices.include? i
451
+ assert(sf.coverage[i], "Test #{testname}; " +
452
+ "line should have been marked: #{lines[i].inspect}.")
453
+ else
454
+ assert(!sf.coverage[i], "Test #{testname}; " +
455
+ "line should not have been marked: #{lines[i].inspect}.")
456
+ end
457
+ end
458
+ end
459
+
460
+ def verify_everything_marked(testname, str)
461
+ verify_marked_exactly(testname, (0...str.size).to_a, str)
462
+ end
463
+
464
+
465
+ def code_info_from_string(str)
466
+ str = str.gsub(/^\s*/,"")
467
+ [ str.lines.map{|line| line.sub(/^\d+ /, "") },
468
+ str.lines.map{|line| line[/^\d+/].to_i > 0},
469
+ str.lines.map{|line| line[/^\d+/].to_i } ]
470
+ end
471
+ end