search_biomodel 0.1.2 → 1.0.0
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- data/Gemfile +1 -2
- data/Gemfile.lock +17 -3
- data/README.rdoc +9 -2
- data/VERSION +1 -1
- data/lib/search_biomodel.rb +11 -8
- data/search_biomodel.gemspec +1055 -9
- data/search_biomodel/ruby/1.8/bin/jeweler +19 -0
- data/search_biomodel/ruby/1.8/bin/nokogiri +19 -0
- data/search_biomodel/ruby/1.8/bin/rackup +19 -0
- data/search_biomodel/ruby/1.8/bin/rake +19 -0
- data/search_biomodel/ruby/1.8/bin/rcov +19 -0
- data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
- data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +89 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +229 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +232 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +296 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +55364 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +109 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +23 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +197 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +160 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +63 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +334 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +40 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +225 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +150 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +546 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +77 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +240 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +156 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +479 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +104 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +48 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +146 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +719 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +273 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +40 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +44 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +110 -0
- data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +55 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +2 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +81 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +11 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +26 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +23 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +45 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +63 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +53 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +160 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +77 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +49 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +46 -0
- data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +2 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +5 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +60 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +8 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +223 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +18 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +28 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +198 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +67 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +98 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +81 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +91 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +56 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +90 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +16 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +15 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +10 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +1 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +232 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +164 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +142 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +117 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +128 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +284 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +135 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +125 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +95 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +27 -0
- data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +166 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +22 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +59 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +216 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +81 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +103 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +86 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +13 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +71 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +102 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +158 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +54 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +149 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +70 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +382 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +31 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +49 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +244 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler.rb +177 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +36 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +50 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +31 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +82 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +59 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +30 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +55 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +87 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +287 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +61 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +43 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +29 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +41 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +162 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +44 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +39 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +95 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +38 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +38 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +110 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +224 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +5 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +48 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +12 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +20 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +19 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Rakefile +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/flunking.rb +7 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/helper.rb +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bundler_setup.erb +10 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/default.feature +9 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/features/support/env.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/jeweler_tasks.erb +31 -0
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- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/version.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcovrt.so +0 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/setup.rb +1588 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_01.rb +7 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_02.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_03.rb +20 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_04.rb +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-new.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-old.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05.rb +17 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_06.rb +8 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/call_site_analyzer_test.rb +171 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/code_coverage_analyzer_test.rb +220 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-all.out +7 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-diff.out +11 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-original.out +5 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-no-color.out +12 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff.out +12 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/gcc-text.out +10 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.html +651 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.rb +28 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_04_rb.html +641 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/file_statistics_test.rb +471 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/functional_test.rb +91 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/test_helper.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/turn_off_rcovrt.rb +4 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.gitignore +9 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec +1 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml +7 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts +2 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md +533 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile +4 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE +20 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md +39 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile +40 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb +161 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/hash.rb +70 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb +51 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/time.rb +22 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb +6 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb +83 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb +42 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap.rb +24 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb +59 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/request.rb +61 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/xml.rb +184 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/version.rb +5 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/document.rb +112 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb +96 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/request.rb +35 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsse.rb +156 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/savon.gemspec +30 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/gzip/message.gz +0 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/another_soap_fault.xml +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/authentication.xml +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/header.xml +13 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/list.xml +18 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/multi_ref.xml +39 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault.xml +8 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/response/soap_fault12.xml +18 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/authentication.xml +63 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/geotrust.xml +156 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/namespaced_actions.xml +307 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/no_namespace.xml +115 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/soap12.xml +11 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/two_bindings.xml +25 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/client_spec.rb +354 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/hash_spec.rb +121 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/object_spec.rb +19 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/string_spec.rb +57 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/core_ext/time_spec.rb +13 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/http/error_spec.rb +52 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/savon_spec.rb +85 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/fault_spec.rb +89 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/request_spec.rb +45 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/response_spec.rb +181 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/xml_spec.rb +341 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap_spec.rb +21 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/document_spec.rb +132 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/parser_spec.rb +107 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsdl/request_spec.rb +15 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/wsse_spec.rb +232 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/spec_helper.rb +14 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/endpoint.rb +25 -0
- data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/support/fixture.rb +37 -0
- data/search_biomodel/ruby/1.8/specifications/builder-3.0.0.gemspec +36 -0
- data/search_biomodel/ruby/1.8/specifications/git-1.2.5.gemspec +30 -0
- data/search_biomodel/ruby/1.8/specifications/gyoku-0.4.4.gemspec +41 -0
- data/search_biomodel/ruby/1.8/specifications/httpi-0.9.4.gemspec +49 -0
- data/search_biomodel/ruby/1.8/specifications/jeweler-1.6.2.gemspec +79 -0
- data/search_biomodel/ruby/1.8/specifications/nokogiri-1.4.6.gemspec +53 -0
- data/search_biomodel/ruby/1.8/specifications/nori-1.0.1.gemspec +38 -0
- data/search_biomodel/ruby/1.8/specifications/pyu-ntlm-http-0.1.3.1.gemspec +31 -0
- data/search_biomodel/ruby/1.8/specifications/rack-1.3.0.gemspec +57 -0
- data/search_biomodel/ruby/1.8/specifications/rake-0.9.2.gemspec +43 -0
- data/search_biomodel/ruby/1.8/specifications/rcov-0.9.9.gemspec +34 -0
- data/search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec +55 -0
- data/test/test_search_biomodel.rb +29 -4
- metadata +1071 -36
- data/test.rb +0 -1
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require 'rcov/formatters/html_erb_template'
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require 'rcov/formatters/base_formatter'
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require 'rcov/formatters/text_summary'
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require 'rcov/formatters/text_report'
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require 'rcov/formatters/text_coverage_diff'
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require 'rcov/formatters/full_text_report'
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require 'rcov/formatters/html_coverage'
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require 'rcov/formatters/failure_report'
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module Rcov
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module Formatters
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end
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end
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module Rcov
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class BaseFormatter # :nodoc:
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require 'pathname'
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require 'rbconfig'
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RCOV_IGNORE_REGEXPS = [ /\A#{Regexp.escape(Pathname.new(::RbConfig::CONFIG['libdir']).cleanpath.to_s)}/,
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/\btc_[^.]*.rb/,
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/_test\.rb\z/,
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/\btest\//,
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/\bvendor\//,
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/\A#{Regexp.escape(__FILE__)}\z/
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]
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DEFAULT_OPTS = { :ignore => RCOV_IGNORE_REGEXPS, :sort => :name, :sort_reverse => false,
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:output_threshold => 101, :dont_ignore => [], :callsite_analyzer => nil, \
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:comments_run_by_default => false }
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def initialize(opts = {})
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options = DEFAULT_OPTS.clone.update(opts)
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@failure_threshold = options[:failure_threshold]
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@files = {}
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@ignore_files = options[:ignore]
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@dont_ignore_files = options[:dont_ignore]
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@sort_criterium = case options[:sort]
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when :loc then lambda{|fname, finfo| finfo.num_code_lines}
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when :coverage then lambda{|fname, finfo| finfo.code_coverage}
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else lambda { |fname, finfo| fname }
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end
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@sort_reverse = options[:sort_reverse]
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@output_threshold = options[:output_threshold]
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@callsite_analyzer = options[:callsite_analyzer]
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@callsite_index = nil
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@mangle_filename = Hash.new{|h,base|
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}
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end
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def add_file(filename, lines, coverage, counts)
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old_filename = filename
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filename = normalize_filename(filename)
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SCRIPT_LINES__[filename] = SCRIPT_LINES__[old_filename]
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if @ignore_files.any?{|x| x === filename} &&
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!@dont_ignore_files.any?{|x| x === filename}
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return nil
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end
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if @files[filename]
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@files[filename].merge(lines, coverage, counts)
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else
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@comments_run_by_default)
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end
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end
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def normalize_filename(filename)
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File.expand_path(filename).gsub(/^#{Regexp.escape(Dir.getwd)}\//, '')
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@mangle_filename[base]
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sorted_file_pairs.each(&b)
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end
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pairs = @files.sort_by do |fname, finfo|
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end.select{|_, finfo| 100 * finfo.code_coverage < @output_threshold}
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end
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def total_coverage
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lines = 0
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total = 0.0
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@files.each do |k,f|
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lines += f.num_lines
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end
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return 0 if lines == 0
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total / lines
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def code_coverage
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lines = 0
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total = 0.0
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@files.each do |k,f|
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total += f.num_code_lines * f.code_coverage
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lines += f.num_code_lines
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end
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return 0 if lines == 0
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total / lines
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end
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lines = 0
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lines
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end
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lines = 0
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lines
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end
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private
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def cross_references_for(filename, lineno)
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return nil unless @callsite_analyzer
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@callsite_index ||= build_callsite_index
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@callsite_index[normalize_filename(filename)][lineno]
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end
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def reverse_cross_references_for(filename, lineno)
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@callsite_reverse_index ||= build_reverse_callsite_index
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@callsite_reverse_index[normalize_filename(filename)][lineno]
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end
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def build_callsite_index
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index = Hash.new{|h,k| h[k] = {}}
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@callsite_analyzer.analyzed_methods(classname).each do |methname|
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defsite = @callsite_analyzer.defsite(classname, methname)
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index[normalize_filename(defsite.file)][defsite.line] =
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@callsite_analyzer.callsites(classname, methname)
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end
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end
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index
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end
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def build_reverse_callsite_index
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index = Hash.new{|h,k| h[k] = {}}
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@callsite_analyzer.analyzed_classes.each do |classname|
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@callsite_analyzer.analyzed_methods(classname).each do |methname|
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callsites = @callsite_analyzer.callsites(classname, methname)
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defsite = @callsite_analyzer.defsite(classname, methname)
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callsites.each_pair do |callsite, count|
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next unless callsite.file
|
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fname = normalize_filename(callsite.file)
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(index[fname][callsite.line] ||= []) << [classname, methname, defsite, count]
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end
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end
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end
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index
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end
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class XRefHelper < Struct.new(:file, :line, :klass, :mid, :count) # :nodoc:
|
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end
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def _get_defsites(ref_blocks, filename, lineno, linetext, label, &format_call_ref)
|
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if @do_cross_references and
|
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(rev_xref = reverse_cross_references_for(filename, lineno))
|
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refs = rev_xref.map do |classname, methodname, defsite, count|
|
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XRefHelper.new(defsite.file, defsite.line, classname, methodname, count)
|
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end.sort_by{|r| r.count}.reverse
|
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ref_blocks << [refs, label, format_call_ref]
|
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end
|
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end
|
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|
164
|
+
def _get_callsites(ref_blocks, filename, lineno, linetext, label, &format_called_ref)
|
165
|
+
if @do_callsites and
|
166
|
+
(refs = cross_references_for(filename, lineno))
|
167
|
+
refs = refs.sort_by{|k,count| count}.map do |ref, count|
|
168
|
+
XRefHelper.new(ref.file, ref.line, ref.calling_class, ref.calling_method, count)
|
169
|
+
end.reverse
|
170
|
+
ref_blocks << [refs, label, format_called_ref]
|
171
|
+
end
|
172
|
+
end
|
173
|
+
end
|
174
|
+
end
|
@@ -0,0 +1,15 @@
|
|
1
|
+
module Rcov
|
2
|
+
class FailureReport < TextSummary # :nodoc:
|
3
|
+
def execute
|
4
|
+
puts summary
|
5
|
+
coverage = code_coverage * 100
|
6
|
+
if coverage < @failure_threshold
|
7
|
+
puts "You failed to satisfy the coverage theshold of #{@failure_threshold}%"
|
8
|
+
exit(1)
|
9
|
+
end
|
10
|
+
if (coverage - @failure_threshold) > 3
|
11
|
+
puts "Your coverage has significantly increased over your threshold of #{@failure_threshold}. Please increase it."
|
12
|
+
end
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
@@ -0,0 +1,48 @@
|
|
1
|
+
module Rcov
|
2
|
+
class FullTextReport < BaseFormatter # :nodoc:
|
3
|
+
DEFAULT_OPTS = {:textmode => :coverage}
|
4
|
+
|
5
|
+
def initialize(opts = {})
|
6
|
+
options = DEFAULT_OPTS.clone.update(opts)
|
7
|
+
@textmode = options[:textmode]
|
8
|
+
@color = options[:color]
|
9
|
+
super(options)
|
10
|
+
end
|
11
|
+
|
12
|
+
def execute
|
13
|
+
each_file_pair_sorted do |filename, fileinfo|
|
14
|
+
puts "=" * 80
|
15
|
+
puts filename
|
16
|
+
puts "=" * 80
|
17
|
+
lines = SCRIPT_LINES__[filename]
|
18
|
+
|
19
|
+
unless lines
|
20
|
+
# try to get the source code from the global code coverage
|
21
|
+
# analyzer
|
22
|
+
re = /#{Regexp.escape(filename)}\z/
|
23
|
+
if $rcov_code_coverage_analyzer and
|
24
|
+
(data = $rcov_code_coverage_analyzer.data_matching(re))
|
25
|
+
lines = data[0]
|
26
|
+
end
|
27
|
+
end
|
28
|
+
|
29
|
+
(lines || []).each_with_index do |line, i|
|
30
|
+
case @textmode
|
31
|
+
when :counts
|
32
|
+
puts "%-70s| %6d" % [line.chomp[0,70], fileinfo.counts[i]]
|
33
|
+
when :gcc
|
34
|
+
puts "%s:%d:%s" % [filename, i+1, line.chomp] unless fileinfo.coverage[i]
|
35
|
+
when :coverage
|
36
|
+
if @color
|
37
|
+
prefix = fileinfo.coverage[i] ? "\e[32;40m" : "\e[31;40m"
|
38
|
+
puts "#{prefix}%s\e[37;40m" % line.chomp
|
39
|
+
else
|
40
|
+
prefix = fileinfo.coverage[i] ? " " : "!! "
|
41
|
+
puts "#{prefix}#{line}"
|
42
|
+
end
|
43
|
+
end
|
44
|
+
end
|
45
|
+
end
|
46
|
+
end
|
47
|
+
end
|
48
|
+
end
|
@@ -0,0 +1,274 @@
|
|
1
|
+
module Rcov
|
2
|
+
class HTMLCoverage < BaseFormatter # :nodoc:
|
3
|
+
require 'fileutils'
|
4
|
+
|
5
|
+
DEFAULT_OPTS = {:color => false, :fsr => 30, :destdir => "coverage",
|
6
|
+
:callsites => false, :cross_references => false,
|
7
|
+
:charset => nil }
|
8
|
+
|
9
|
+
def initialize(opts = {})
|
10
|
+
options = DEFAULT_OPTS.clone.update(opts)
|
11
|
+
super(options)
|
12
|
+
@dest = options[:destdir]
|
13
|
+
@css = options[:css]
|
14
|
+
@color = options[:color]
|
15
|
+
@fsr = options[:fsr]
|
16
|
+
@do_callsites = options[:callsites]
|
17
|
+
@do_cross_references = options[:cross_references]
|
18
|
+
@span_class_index = 0
|
19
|
+
@charset = options[:charset]
|
20
|
+
end
|
21
|
+
|
22
|
+
def execute
|
23
|
+
return if @files.empty?
|
24
|
+
FileUtils.mkdir_p @dest
|
25
|
+
|
26
|
+
# Copy collaterals
|
27
|
+
['screen.css','print.css','rcov.js','jquery-1.3.2.min.js','jquery.tablesorter.min.js'].each do |_file|
|
28
|
+
_src = File.expand_path("#{File.dirname(__FILE__)}/../templates/#{_file}")
|
29
|
+
FileUtils.cp(_src, File.join(@dest, "#{_file}"))
|
30
|
+
end
|
31
|
+
|
32
|
+
# Copy custom CSS, if any
|
33
|
+
if @css
|
34
|
+
begin
|
35
|
+
_src = File.expand_path("#{@dest}/../#{@css}")
|
36
|
+
FileUtils.cp(_src, File.join(@dest, "custom.css"))
|
37
|
+
rescue
|
38
|
+
@css = nil
|
39
|
+
end
|
40
|
+
end
|
41
|
+
|
42
|
+
create_index(File.join(@dest, "index.html"))
|
43
|
+
|
44
|
+
each_file_pair_sorted do |filename, fileinfo|
|
45
|
+
create_file(File.join(@dest, mangle_filename(filename)), fileinfo)
|
46
|
+
end
|
47
|
+
end
|
48
|
+
|
49
|
+
private
|
50
|
+
|
51
|
+
class SummaryFileInfo # :nodoc:
|
52
|
+
def initialize(obj)
|
53
|
+
@o = obj
|
54
|
+
end
|
55
|
+
|
56
|
+
def num_lines
|
57
|
+
@o.num_lines
|
58
|
+
end
|
59
|
+
|
60
|
+
def num_code_lines
|
61
|
+
@o.num_code_lines
|
62
|
+
end
|
63
|
+
|
64
|
+
def code_coverage
|
65
|
+
@o.code_coverage
|
66
|
+
end
|
67
|
+
|
68
|
+
def code_coverage_for_report
|
69
|
+
code_coverage * 100
|
70
|
+
end
|
71
|
+
|
72
|
+
def total_coverage
|
73
|
+
@o.total_coverage
|
74
|
+
end
|
75
|
+
|
76
|
+
def total_coverage_for_report
|
77
|
+
total_coverage * 100
|
78
|
+
end
|
79
|
+
|
80
|
+
def name
|
81
|
+
"TOTAL"
|
82
|
+
end
|
83
|
+
end
|
84
|
+
|
85
|
+
def create_index(destname)
|
86
|
+
|
87
|
+
doc = Rcov::Formatters::HtmlErbTemplate.new('index.html.erb',
|
88
|
+
:project_name => project_name,
|
89
|
+
:generated_on => Time.now,
|
90
|
+
:css => @css,
|
91
|
+
:rcov => Rcov,
|
92
|
+
:formatter => self,
|
93
|
+
:output_threshold => @output_threshold,
|
94
|
+
:total => SummaryFileInfo.new(self),
|
95
|
+
:files => each_file_pair_sorted.map{|k,v| v}
|
96
|
+
)
|
97
|
+
File.open(destname, "w") { |f| f.puts doc.render }
|
98
|
+
end
|
99
|
+
|
100
|
+
def create_file(destfile, fileinfo)
|
101
|
+
doc = Rcov::Formatters::HtmlErbTemplate.new('detail.html.erb',
|
102
|
+
:project_name => project_name,
|
103
|
+
:rcov_page_title => fileinfo.name,
|
104
|
+
:css => @css,
|
105
|
+
:generated_on => Time.now,
|
106
|
+
:rcov => Rcov,
|
107
|
+
:formatter => self,
|
108
|
+
:output_threshold => @output_threshold,
|
109
|
+
:fileinfo => fileinfo
|
110
|
+
)
|
111
|
+
File.open(destfile, "w") { |f| f.puts doc.render }
|
112
|
+
end
|
113
|
+
|
114
|
+
private
|
115
|
+
|
116
|
+
def project_name
|
117
|
+
Dir.pwd.split('/')[-1].split(/[^a-zA-Z0-9]/).map{|i| i.gsub(/[^a-zA-Z0-9]/,'').capitalize} * " " || ""
|
118
|
+
end
|
119
|
+
|
120
|
+
end
|
121
|
+
|
122
|
+
class HTMLProfiling < HTMLCoverage # :nodoc:
|
123
|
+
DEFAULT_OPTS = {:destdir => "profiling"}
|
124
|
+
def initialize(opts = {})
|
125
|
+
options = DEFAULT_OPTS.clone.update(opts)
|
126
|
+
super(options)
|
127
|
+
@max_cache = {}
|
128
|
+
@median_cache = {}
|
129
|
+
end
|
130
|
+
|
131
|
+
def default_title
|
132
|
+
"Bogo-profile information"
|
133
|
+
end
|
134
|
+
|
135
|
+
def default_color
|
136
|
+
if @color
|
137
|
+
"rgb(179,205,255)"
|
138
|
+
else
|
139
|
+
"rgb(255, 255, 255)"
|
140
|
+
end
|
141
|
+
end
|
142
|
+
|
143
|
+
def output_color_table?
|
144
|
+
false
|
145
|
+
end
|
146
|
+
|
147
|
+
def span_class(sourceinfo, marked, count)
|
148
|
+
full_scale_range = @fsr # dB
|
149
|
+
nz_count = sourceinfo.counts.select{|x| x && x != 0}
|
150
|
+
nz_count << 1 # avoid div by 0
|
151
|
+
max = @max_cache[sourceinfo] ||= nz_count.max
|
152
|
+
#avg = @median_cache[sourceinfo] ||= 1.0 *
|
153
|
+
# nz_count.inject{|a,b| a+b} / nz_count.size
|
154
|
+
median = @median_cache[sourceinfo] ||= 1.0 * nz_count.sort[nz_count.size/2]
|
155
|
+
max ||= 2
|
156
|
+
max = 2 if max == 1
|
157
|
+
if marked == true
|
158
|
+
count = 1 if !count || count == 0
|
159
|
+
idx = 50 + 1.0 * (500/full_scale_range) * Math.log(count/median) / Math.log(10)
|
160
|
+
idx = idx.to_i
|
161
|
+
idx = 0 if idx < 0
|
162
|
+
idx = 100 if idx > 100
|
163
|
+
"run#{idx}"
|
164
|
+
else
|
165
|
+
nil
|
166
|
+
end
|
167
|
+
end
|
168
|
+
end
|
169
|
+
|
170
|
+
class RubyAnnotation < BaseFormatter # :nodoc:
|
171
|
+
DEFAULT_OPTS = { :destdir => "coverage" }
|
172
|
+
def initialize(opts = {})
|
173
|
+
options = DEFAULT_OPTS.clone.update(opts)
|
174
|
+
super(options)
|
175
|
+
@dest = options[:destdir]
|
176
|
+
@do_callsites = true
|
177
|
+
@do_cross_references = true
|
178
|
+
|
179
|
+
@mangle_filename = Hash.new{ |h,base|
|
180
|
+
h[base] = Pathname.new(base).cleanpath.to_s.gsub(%r{^\w:[/\\]}, "").gsub(/\./, "_").gsub(/[\\\/]/, "-") + ".rb"
|
181
|
+
}
|
182
|
+
end
|
183
|
+
|
184
|
+
def execute
|
185
|
+
return if @files.empty?
|
186
|
+
FileUtils.mkdir_p @dest
|
187
|
+
each_file_pair_sorted do |filename, fileinfo|
|
188
|
+
create_file(File.join(@dest, mangle_filename(filename)), fileinfo)
|
189
|
+
end
|
190
|
+
end
|
191
|
+
|
192
|
+
private
|
193
|
+
|
194
|
+
def format_lines(file)
|
195
|
+
result = ""
|
196
|
+
format_line = "%#{file.num_lines.to_s.size}d"
|
197
|
+
file.num_lines.times do |i|
|
198
|
+
line = file.lines[i].chomp
|
199
|
+
marked = file.coverage[i]
|
200
|
+
count = file.counts[i]
|
201
|
+
result << create_cross_refs(file.name, i+1, line, marked) + "\n"
|
202
|
+
end
|
203
|
+
result
|
204
|
+
end
|
205
|
+
|
206
|
+
def create_cross_refs(filename, lineno, linetext, marked)
|
207
|
+
return linetext unless @callsite_analyzer && @do_callsites
|
208
|
+
ref_blocks = []
|
209
|
+
_get_defsites(ref_blocks, filename, lineno, linetext, ">>") do |ref|
|
210
|
+
if ref.file
|
211
|
+
ref.file.sub!(%r!^./!, '')
|
212
|
+
where = "at #{mangle_filename(ref.file)}:#{ref.line}"
|
213
|
+
else
|
214
|
+
where = "(C extension/core)"
|
215
|
+
end
|
216
|
+
"#{ref.klass}##{ref.mid} " + where + ""
|
217
|
+
end
|
218
|
+
_get_callsites(ref_blocks, filename, lineno, linetext, "<<") do |ref| # "
|
219
|
+
ref.file.sub!(%r!^./!, '')
|
220
|
+
"#{mangle_filename(ref.file||'C code')}:#{ref.line} " + "in #{ref.klass}##{ref.mid}"
|
221
|
+
end
|
222
|
+
|
223
|
+
create_cross_reference_block(linetext, ref_blocks, marked)
|
224
|
+
end
|
225
|
+
|
226
|
+
def create_cross_reference_block(linetext, ref_blocks, marked)
|
227
|
+
codelen = 75
|
228
|
+
if ref_blocks.empty?
|
229
|
+
if marked
|
230
|
+
return "%-#{codelen}s #o" % linetext
|
231
|
+
else
|
232
|
+
return linetext
|
233
|
+
end
|
234
|
+
end
|
235
|
+
ret = ""
|
236
|
+
@cross_ref_idx ||= 0
|
237
|
+
@known_files ||= sorted_file_pairs.map{|fname, finfo| normalize_filename(fname)}
|
238
|
+
ret << "%-#{codelen}s # " % linetext
|
239
|
+
ref_blocks.each do |refs, toplabel, label_proc|
|
240
|
+
unless !toplabel || toplabel.empty?
|
241
|
+
ret << toplabel << " "
|
242
|
+
end
|
243
|
+
refs.each do |dst|
|
244
|
+
dstfile = normalize_filename(dst.file) if dst.file
|
245
|
+
dstline = dst.line
|
246
|
+
label = label_proc.call(dst)
|
247
|
+
if dst.file && @known_files.include?(dstfile)
|
248
|
+
ret << "[[" << label << "]], "
|
249
|
+
else
|
250
|
+
ret << label << ", "
|
251
|
+
end
|
252
|
+
end
|
253
|
+
end
|
254
|
+
ret
|
255
|
+
end
|
256
|
+
|
257
|
+
def create_file(destfile, fileinfo)
|
258
|
+
#body = format_lines(fileinfo)
|
259
|
+
#File.open(destfile, "w") do |f|
|
260
|
+
#f.puts body
|
261
|
+
#f.puts footer(fileinfo)
|
262
|
+
#end
|
263
|
+
end
|
264
|
+
|
265
|
+
def footer(fileinfo)
|
266
|
+
s = "# Total lines : %d\n" % fileinfo.num_lines
|
267
|
+
s << "# Lines of code : %d\n" % fileinfo.num_code_lines
|
268
|
+
s << "# Total coverage : %3.1f%%\n" % [ fileinfo.total_coverage*100 ]
|
269
|
+
s << "# Code coverage : %3.1f%%\n\n" % [ fileinfo.code_coverage*100 ]
|
270
|
+
# prevents false positives on Emacs
|
271
|
+
s << "# Local " "Variables:\n" "# mode: " "rcov-xref\n" "# End:\n"
|
272
|
+
end
|
273
|
+
end
|
274
|
+
end
|