search_biomodel 0.1.2 → 1.0.0

data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/abstract/id.rb

@@ -0,0 +1,351 @@
+# AUTHOR: blink <blinketje@gmail.com>; blink#ruby-lang@irc.freenode.net
+# bugrep: Andreas Zehnder
+
+require 'time'
+require 'rack/request'
+require 'rack/response'
+begin
+  require 'securerandom'
+rescue LoadError
+  # We just won't get securerandom
+end
+
+module Rack
+
+  module Session
+
+    module Abstract
+      ENV_SESSION_KEY = 'rack.session'.freeze
+      ENV_SESSION_OPTIONS_KEY = 'rack.session.options'.freeze
+
+      # Thin wrapper around Hash that allows us to lazily load session id into session_options.
+
+      class OptionsHash < Hash #:nodoc:
+        def initialize(by, env, default_options)
+          @by = by
+          @env = env
+          @session_id_loaded = false
+          merge!(default_options)
+        end
+
+        def [](key)
+          load_session_id! if key == :id && session_id_not_loaded?
+          super
+        end
+
+      private
+
+        def session_id_not_loaded?
+          !key?(:id) && !@session_id_loaded
+        end
+
+        def load_session_id!
+          self[:id] = @by.send(:extract_session_id, @env)
+          @session_id_loaded = true
+        end
+      end
+
+      # SessionHash is responsible to lazily load the session from store.
+
+      class SessionHash < Hash
+        def initialize(by, env)
+          super()
+          @by = by
+          @env = env
+          @loaded = false
+        end
+
+        def [](key)
+          load_for_read!
+          super(key.to_s)
+        end
+
+        def has_key?(key)
+          load_for_read!
+          super(key.to_s)
+        end
+        alias :key? :has_key?
+        alias :include? :has_key?
+
+        def []=(key, value)
+          load_for_write!
+          super(key.to_s, value)
+        end
+
+        def clear
+          load_for_write!
+          super
+        end
+
+        def to_hash
+          load_for_read!
+          h = {}.replace(self)
+          h.delete_if { |k,v| v.nil? }
+          h
+        end
+
+        def update(hash)
+          load_for_write!
+          super(stringify_keys(hash))
+        end
+
+        def delete(key)
+          load_for_write!
+          super(key.to_s)
+        end
+
+        def inspect
+          load_for_read!
+          super
+        end
+
+        def exists?
+          return @exists if instance_variable_defined?(:@exists)
+          @exists = @by.send(:session_exists?, @env)
+        end
+
+        def loaded?
+          @loaded
+        end
+
+      private
+
+        def load_for_read!
+          load! if !loaded? && exists?
+        end
+
+        def load_for_write!
+          load! unless loaded?
+        end
+
+        def load!
+          id, session = @by.send(:load_session, @env)
+          @env[ENV_SESSION_OPTIONS_KEY][:id] = id
+          replace(stringify_keys(session))
+          @loaded = true
+        end
+
+        def stringify_keys(other)
+          hash = {}
+          other.each do |key, value|
+            hash[key.to_s] = value
+          end
+          hash
+        end
+      end
+
+      # ID sets up a basic framework for implementing an id based sessioning
+      # service. Cookies sent to the client for maintaining sessions will only
+      # contain an id reference. Only #get_session and #set_session are
+      # required to be overwritten.
+      #
+      # All parameters are optional.
+      # * :key determines the name of the cookie, by default it is
+      #   'rack.session'
+      # * :path, :domain, :expire_after, :secure, and :httponly set the related
+      #   cookie options as by Rack::Response#add_cookie
+      # * :defer will not set a cookie in the response.
+      # * :renew (implementation dependent) will prompt the generation of a new
+      #   session id, and migration of data to be referenced at the new id. If
+      #   :defer is set, it will be overridden and the cookie will be set.
+      # * :sidbits sets the number of bits in length that a generated session
+      #   id will be.
+      #
+      # These options can be set on a per request basis, at the location of
+      # env['rack.session.options']. Additionally the id of the session can be
+      # found within the options hash at the key :id. It is highly not
+      # recommended to change its value.
+      #
+      # Is Rack::Utils::Context compatible.
+      #
+      # Not included by default; you must require 'rack/session/abstract/id'
+      # to use.
+
+      class ID
+        DEFAULT_OPTIONS = {
+          :key =>           'rack.session',
+          :path =>          '/',
+          :domain =>        nil,
+          :expire_after =>  nil,
+          :secure =>        false,
+          :httponly =>      true,
+          :defer =>         false,
+          :renew =>         false,
+          :sidbits =>       128,
+          :cookie_only =>   true,
+          :secure_random => begin ::SecureRandom rescue false end
+        }
+
+        attr_reader :key, :default_options
+
+        def initialize(app, options={})
+          @app = app
+          @default_options = self.class::DEFAULT_OPTIONS.merge(options)
+          @key = options[:key] || "rack.session"
+          @cookie_only = @default_options.delete(:cookie_only)
+          initialize_sid
+        end
+
+        def call(env)
+          context(env)
+        end
+
+        def context(env, app=@app)
+          prepare_session(env)
+          status, headers, body = app.call(env)
+          commit_session(env, status, headers, body)
+        end
+
+        private
+
+        def initialize_sid
+          @sidbits = @default_options[:sidbits]
+          @sid_secure = @default_options[:secure_random]
+          @sid_length = @sidbits / 4
+        end
+
+        # Generate a new session id using Ruby #rand.  The size of the
+        # session id is controlled by the :sidbits option.
+        # Monkey patch this to use custom methods for session id generation.
+
+        def generate_sid(secure = @sid_secure)
+          if secure
+            SecureRandom.hex(@sid_length)
+          else
+            "%0#{@sid_length}x" % Kernel.rand(2**@sidbits - 1)
+          end
+        rescue NotImpelentedError
+          generate_sid(false)
+        end
+
+        # Sets the lazy session at 'rack.session' and places options and session
+        # metadata into 'rack.session.options'.
+
+        def prepare_session(env)
+          env[ENV_SESSION_KEY] = SessionHash.new(self, env)
+          env[ENV_SESSION_OPTIONS_KEY] = OptionsHash.new(self, env, @default_options)
+        end
+
+        # Extracts the session id from provided cookies and passes it and the
+        # environment to #get_session.
+
+        def load_session(env)
+          sid = current_session_id(env)
+          sid, session = get_session(env, sid)
+          [sid, session || {}]
+        end
+
+        # Extract session id from request object.
+
+        def extract_session_id(env)
+          request = Rack::Request.new(env)
+          sid = request.cookies[@key]
+          sid ||= request.params[@key] unless @cookie_only
+          sid
+        end
+
+        # Returns the current session id from the OptionsHash.
+
+        def current_session_id(env)
+          env[ENV_SESSION_OPTIONS_KEY][:id]
+        end
+
+        # Check if the session exists or not.
+
+        def session_exists?(env)
+          value = current_session_id(env)
+          value && !value.empty?
+        end
+
+        # Session should be commited if it was loaded, any of specific options like :renew, :drop
+        # or :expire_after was given and the security permissions match.
+
+        def commit_session?(env, session, options)
+          (loaded_session?(session) || force_options?(options)) && secure_session?(env, options)
+        end
+
+        def loaded_session?(session)
+          !session.is_a?(SessionHash) || session.loaded?
+        end
+
+        def force_options?(options)
+          options.values_at(:renew, :drop, :defer, :expire_after).any?
+        end
+
+        def secure_session?(env, options)
+          return true unless options[:secure]
+          request = Rack::Request.new(env)
+          request.ssl?
+        end
+
+        # Acquires the session from the environment and the session id from
+        # the session options and passes them to #set_session. If successful
+        # and the :defer option is not true, a cookie will be added to the
+        # response with the session's id.
+
+        def commit_session(env, status, headers, body)
+          session = env['rack.session']
+          options = env['rack.session.options']
+
+          if options[:drop] || options[:renew]
+            session_id = destroy_session(env, options[:id] || generate_sid, options)
+            return [status, headers, body] unless session_id
+          end
+
+          return [status, headers, body] unless commit_session?(env, session, options)
+
+          session.send(:load!) unless loaded_session?(session)
+          session = session.to_hash
+          session_id ||= options[:id] || generate_sid
+
+          if not data = set_session(env, session_id, session, options)
+            env["rack.errors"].puts("Warning! #{self.class.name} failed to save session. Content dropped.")
+          elsif options[:defer] and not options[:renew]
+            env["rack.errors"].puts("Defering cookie for #{session_id}") if $VERBOSE
+          else
+            cookie = Hash.new
+            cookie[:value] = data
+            cookie[:expires] = Time.now + options[:expire_after] if options[:expire_after]
+            set_cookie(env, headers, cookie.merge!(options))
+          end
+
+          [status, headers, body]
+        end
+
+        # Sets the cookie back to the client with session id. We skip the cookie
+        # setting if the value didn't change (sid is the same) or expires was given.
+
+        def set_cookie(env, headers, cookie)
+          request = Rack::Request.new(env)
+          if request.cookies[@key] != cookie[:value] || cookie[:expires]
+            Utils.set_cookie_header!(headers, @key, cookie)
+          end
+        end
+
+        # All thread safety and session retrival proceedures should occur here.
+        # Should return [session_id, session].
+        # If nil is provided as the session id, generation of a new valid id
+        # should occur within.
+
+        def get_session(env, sid)
+          raise '#get_session not implemented.'
+        end
+
+        # All thread safety and session storage proceedures should occur here.
+        # Should return true or false dependant on whether or not the session
+        # was saved or not.
+
+        def set_session(env, sid, session, options)
+          raise '#set_session not implemented.'
+        end
+
+        # All thread safety and session destroy proceedures should occur here.
+        # Should return a new session id or nil if options[:drop]
+
+        def destroy_session(env, sid, options)
+          raise '#destroy_session not implemented'
+        end
+      end
+    end
+  end
+end

data/search_biomodel/ruby/1.8/gems/rack-1.3.0/lib/rack/session/cookie.rb

@@ -0,0 +1,152 @@
+require 'openssl'
+require 'rack/request'
+require 'rack/response'
+require 'rack/session/abstract/id'
+
+module Rack
+
+  module Session
+
+    # Rack::Session::Cookie provides simple cookie based session management.
+    # By default, the session is a Ruby Hash stored as base64 encoded marshalled
+    # data set to :key (default: rack.session).  The object that encodes the
+    # session data is configurable and must respond to +encode+ and +decode+.
+    # Both methods must take a string and return a string.
+    #
+    # When the secret key is set, cookie data is checked for data integrity.
+    #
+    # Example:
+    #
+    #     use Rack::Session::Cookie, :key => 'rack.session',
+    #                                :domain => 'foo.com',
+    #                                :path => '/',
+    #                                :expire_after => 2592000,
+    #                                :secret => 'change_me'
+    #
+    #     All parameters are optional.
+    #
+    # Example of a cookie with no encoding:
+    #
+    #   Rack::Session::Cookie.new(application, {
+    #     :coder => Racke::Session::Cookie::Identity.new
+    #   })
+    #
+    # Example of a cookie with custom encoding:
+    #
+    #   Rack::Session::Cookie.new(application, {
+    #     :coder => Class.new {
+    #       def encode(str); str.reverse; end
+    #       def decode(str); str.reverse; end
+    #     }.new
+    #   })
+    #
+
+    class Cookie < Abstract::ID
+      # Encode session cookies as Base64
+      class Base64
+        def encode(str)
+          [str].pack('m')
+        end
+
+        def decode(str)
+          str.unpack('m').first
+        end
+
+        # Encode session cookies as Marshaled Base64 data
+        class Marshal < Base64
+          def encode(str)
+            super(::Marshal.dump(str))
+          end
+
+          def decode(str)
+            ::Marshal.load(super(str)) rescue nil
+          end
+        end
+      end
+
+      # Use no encoding for session cookies
+      class Identity
+        def encode(str); str; end
+        def decode(str); str; end
+      end
+
+      # Reverse string encoding. (trollface)
+      class Reverse
+        def encode(str); str.reverse; end
+        def decode(str); str.reverse; end
+      end
+
+      attr_reader :coder
+
+      def initialize(app, options={})
+        @secret = options[:secret]
+        @coder  = options[:coder] ||= Base64::Marshal.new
+        super(app, options.merge!(:cookie_only => true))
+      end
+
+      private
+
+      def load_session(env)
+        data = unpacked_cookie_data(env)
+        data = persistent_session_id!(data)
+        [data["session_id"], data]
+      end
+
+      def extract_session_id(env)
+        unpacked_cookie_data(env)["session_id"]
+      end
+
+      def unpacked_cookie_data(env)
+        env["rack.session.unpacked_cookie_data"] ||= begin
+          request = Rack::Request.new(env)
+          session_data = request.cookies[@key]
+
+          if @secret && session_data
+            session_data, digest = session_data.split("--")
+            session_data = nil  unless digest == generate_hmac(session_data)
+          end
+
+          coder.decode(session_data) || {}
+        end
+      end
+
+      def persistent_session_id!(data, sid=nil)
+        data ||= {}
+        data["session_id"] ||= sid || generate_sid
+        data
+      end
+
+      # Overwrite set cookie to bypass content equality and always stream the cookie.
+
+      def set_cookie(env, headers, cookie)
+        Utils.set_cookie_header!(headers, @key, cookie)
+      end
+
+      def set_session(env, session_id, session, options)
+        session = session.merge("session_id" => session_id)
+        session_data = coder.encode(session)
+
+        if @secret
+          session_data = "#{session_data}--#{generate_hmac(session_data)}"
+        end
+
+        if session_data.size > (4096 - @key.size)
+          env["rack.errors"].puts("Warning! Rack::Session::Cookie data size exceeds 4K.")
+          nil
+        else
+          session_data
+        end
+      end
+
+      def destroy_session(env, session_id, options)
+        # Nothing to do here, data is in the client
+        generate_sid unless options[:drop]
+      end
+
+      def generate_hmac(data)
+        OpenSSL::HMAC.hexdigest(OpenSSL::Digest::SHA1.new, @secret, data)
+      end
+
+    end
+  end
+end