RubyGems - search_biomodel - Versions diffs - 0.1.2 → 1.0.0 - Mend

search_biomodel 0.1.2 → 1.0.0

Files changed (1059) hide show

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/detail.html.erb ADDED

@@ -0,0 +1,64 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html lang='en' xml:lang='en' xmlns='http://www.w3.org/1999/xhtml'>
+  <head>
+    <title><%= rcov_page_title %></title>
+    <link href="screen.css" media="all" rel="stylesheet" type="text/css" />
+    <link href="print.css" media="print" rel="stylesheet" type="text/css" />
+    <% if css %><link href="custom.css" media="all" rel="stylesheet" type="text/css" /><% end %>
+    <meta http-equiv="Content-type" content="text/html;charset=UTF-8" />
+    <script type="text/javascript" src="rcov.js"></script>
+  </head>
+  <body>
+    <h1><%= "#{project_name} C0 Coverage Information - RCov" %></h1>
+    <h2><%= rcov_page_title %></h2>
+    <% if output_threshold != 101 %>
+      <!-- Note: 101 is the default threshold if you don't enter one -->
+      <p>Threshold: <%= output_threshold %>%</p>
+    <% end %>
+    <div class="report_table_wrapper">
+      <table class='report' id='report_table'>
+        <thead>
+          <tr>
+            <th class="left_align">Name</th>
+            <th class="right_align">Total Lines</th>
+            <th class="right_align">Lines of Code</th>
+            <th class="left_align">Total Coverage</th>
+            <th class="left_align">Code Coverage</th>
+          </tr>
+        </thead>
+        <tbody>
+          <tr>
+            <td class="left_align"><a href="<%= relative_filename(fileinfo.name) %>"><%= fileinfo.name %></a></td>
+            <td class='right_align'><tt><%= fileinfo.num_lines %></tt></td>
+            <td class='right_align'><tt><%= fileinfo.num_code_lines %></tt></td>
+            <td class="left_align"><%= code_coverage_html(fileinfo.total_coverage_for_report) %></td>
+            <td class="left_align"><%= code_coverage_html(fileinfo.code_coverage_for_report) %></td>
+          </tr>
+        </tbody>
+      </table>
+    </div>
+    <h3>Key</h3>
+    <div class="key"><pre><span class='marked'>Code reported as executed by Ruby looks like this...</span><span class='marked1'>and this: this line is also marked as covered.</span><span class='inferred'>Lines considered as run by rcov, but not reported by Ruby, look like this,</span><span class='inferred1'>and this: these lines were inferred by rcov (using simple heuristics).</span><span class='uncovered'>Finally, here's a line marked as not executed.</span></pre></div>
+    <h3>Coverage Details</h3>
+    <table class="details">
+      <tbody>
+        <% fileinfo.num_lines.times do |i| %>
+          <% line = fileinfo.lines[i].chomp %>
+          <% count = fileinfo.counts[i] %>
+          <tr class="<%= line_css(i) %>">
+            <td><pre><a name="line<%= i.next %>"><%= i.next %></a> <%= CGI::escapeHTML(line) %></pre></td>
+          </tr>
+        <% end %>
+      </tbody>
+    </table>
+    <p>Generated on <%= generated_on %> with <a href="<%= rcov::UPSTREAM_URL %>">rcov <%= rcov::VERSION %></a></p>
+  </body>
+</html>

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/index.html.erb ADDED

@@ -0,0 +1,93 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html lang='en' xml:lang='en' xmlns='http://www.w3.org/1999/xhtml'>
+  <head>
+    <meta http-equiv="Content-type" content="text/html;charset=UTF-8" />
+    <title><%= "#{project_name} C0 Coverage Information - RCov" %></title>
+    <link href="screen.css" media="all" rel="stylesheet" type="text/css" />
+    <link href="print.css" media="print" rel="stylesheet" type="text/css" />
+    <% if css %><link href="custom.css" media="all" rel="stylesheet" type="text/css" /><% end %>
+    <script type="text/javascript" src="jquery-1.3.2.min.js"></script>
+    <script type="text/javascript" src="jquery.tablesorter.min.js"></script>
+    <script type="text/javascript" src="rcov.js"></script>
+  </head>
+  <body>
+    <h1><%= "#{project_name} C0 Coverage Information - RCov" %></h1>
+    <% if output_threshold != 101 %>
+      <!-- Note: 101 is the default threshold if you don't enter one -->
+      <p>Threshold: <%= output_threshold %>%</p>
+    <% end %>
+    <noscript><style type="text/css">.if_js { display:none; }</style></noscript>
+    <div class="filters if_js">
+      <fieldset>
+        <label>File Filter:</label>
+        <select id="file_filter" class="filter">
+          <option value="all_files">Show All</option>
+          <% files.map{|f| f.name.split('/')[0..-2]}.flatten.uniq.sort.each do |f| %><option value="<%= f %>"><%= f %>/</option><% end %>
+        </select>
+      </fieldset>
+      <fieldset>
+        <label>Code Coverage Threshold:</label>
+        <select id="coverage_filter" class="filter">
+          <option value="all_coverage">Show All</option>
+          <% (1..10).each do |i| %><option value="<%= i * 10 %>">&lt; <%= i * 10 %>% Coverage</option><% end %>
+          <option value="110">= 100% Coverage</option>
+        </select>
+      </fieldset>
+    </div>
+    <div class="report_table_wrapper">
+      <table class='report' id='report_table'>
+        <thead>
+          <tr>
+            <th class="left_align">Name</th>
+            <th class="right_align">Total Lines</th>
+            <th class="right_align">Lines of Code</th>
+            <th class="left_align">Total Coverage</th>
+            <th class="left_align">Code Coverage</th>
+          </tr>
+        </thead>
+        <tfoot>
+          <tr>
+            <td class="left_align">TOTAL</td>
+            <td class='right_align'><tt><%= total.num_lines %></tt></td>
+            <td class='right_align'><tt><%= total.num_code_lines %></tt></td>
+            <td class="left_align"><%= code_coverage_html(total.total_coverage_for_report) %></td>
+            <td class="left_align"><%= code_coverage_html(total.code_coverage_for_report, true) %></td>
+          </tr>
+        </tfoot>
+        <tbody>
+          <% files.each_with_index do |f,i| %>
+            <tr class="all_files all_coverage <%= coverage_threshold_classes(f.code_coverage_for_report) %> <%= file_filter_classes(f.name) %> <%= i % 2 == 0 ? 'even' : 'odd' %>">
+              <td class="left_align"><a href="<%= CGI::escapeHTML(relative_filename(f.name)) %>"><%= CGI::escapeHTML(f.name) %></a></td>
+              <td class='right_align'><tt><%= f.num_lines %></tt></td>
+              <td class='right_align'><tt><%= f.num_code_lines %></tt></td>
+              <td class="left_align"><%= code_coverage_html(f.total_coverage_for_report) %></td>
+              <td class="left_align"><%= code_coverage_html(f.code_coverage_for_report) %></td>
+            </tr>
+          <% end %>
+        </tbody>
+      </table>
+    </div>
+    <p>Generated on <%= generated_on %> with <a href="<%= rcov::UPSTREAM_URL %>">rcov <%= rcov::VERSION %></a></p>
+    <script type="text/javascript">
+      $(document).ready(function(){$("#report_table").tablesorter({widgets: ['zebra'], textExtraction: 'complex'});});
+      $('.filter').change(function(){
+        ff = $('#file_filter').val();
+        cf = $('#coverage_filter').val();
+        $('table#report_table tbody tr').each(function(i){
+          if ((this.className.split(" ").indexOf(ff) > -1) && (this.className.split(" ").indexOf(cf) > -1)) {
+            this.style.display = "";
+          } else {
+            this.style.display = "none";
+          };
+          restripe();
+        })
+      })
+    </script>
+  </body>
+</html>

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery-1.3.2.min.js ADDED

@@ -0,0 +1,19 @@
+/*
+ * jQuery JavaScript Library v1.3.2
+ * http://jquery.com/
+ *
+ * Copyright (c) 2009 John Resig
+ * Dual licensed under the MIT and GPL licenses.
+ * http://docs.jquery.com/License
+ *
+ * Date: 2009-02-19 17:34:21 -0500 (Thu, 19 Feb 2009)
+ * Revision: 6246
+ */
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data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery.tablesorter.min.js ADDED

@@ -0,0 +1,15 @@
+/*
+ *
+ * TableSorter 2.0 - Client-side table sorting with ease!
+ * Version 2.0.3
+ * @requires jQuery v1.2.3
+ *
+ * Copyright (c) 2007 Christian Bach
+ * Examples and docs at: http://tablesorter.com
+ * Dual licensed under the MIT and GPL licenses:
+ * http://www.opensource.org/licenses/mit-license.php
+ * http://www.gnu.org/licenses/gpl.html
+ *
+ */
+(function($){$.extend({tablesorter:new function(){var parsers=[],widgets=[];this.defaults={cssHeader:"header",cssAsc:"headerSortUp",cssDesc:"headerSortDown",sortInitialOrder:"asc",sortMultiSortKey:"shiftKey",sortForce:null,sortAppend:null,textExtraction:"simple",parsers:{},widgets:[],widgetZebra:{css:["even","odd"]},headers:{},widthFixed:false,cancelSelection:true,sortList:[],headerList:[],dateFormat:"us",decimal:'.',debug:false};function benchmark(s,d){log(s+","+(new Date().getTime()-d.getTime())+"ms");}this.benchmark=benchmark;function log(s){if(typeof console!="undefined"&&typeof console.debug!="undefined"){console.log(s);}else{alert(s);}}function buildParserCache(table,$headers){if(table.config.debug){var parsersDebug="";}var rows=table.tBodies[0].rows;if(table.tBodies[0].rows[0]){var list=[],cells=rows[0].cells,l=cells.length;for(var i=0;i<l;i++){var 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totalRows=(table.tBodies[0]&&table.tBodies[0].rows.length)||0,totalCells=(table.tBodies[0].rows[0]&&table.tBodies[0].rows[0].cells.length)||0,parsers=table.config.parsers,cache={row:[],normalized:[]};for(var i=0;i<totalRows;++i){var c=table.tBodies[0].rows[i],cols=[];cache.row.push($(c));for(var j=0;j<totalCells;++j){cols.push(parsers[j].format(getElementText(table.config,c.cells[j]),table,c.cells[j]));}cols.push(i);cache.normalized.push(cols);cols=null;};if(table.config.debug){benchmark("Building cache for "+totalRows+" rows:",cacheTime);}return cache;};function getElementText(config,node){if(!node)return"";var t="";if(config.textExtraction=="simple"){if(node.childNodes[0]&&node.childNodes[0].hasChildNodes()){t=node.childNodes[0].innerHTML;}else{t=node.innerHTML;}}else{if(typeof(config.textExtraction)=="function"){t=config.textExtraction(node);}else{t=$(node).text();}}return t;}function appendToTable(table,cache){if(table.config.debug){var appendTime=new Date()}var 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$.trim(s.toLowerCase());},type:"text"});ts.addParser({id:"digit",is:function(s,table){var c=table.config;return $.tablesorter.isDigit(s,c);},format:function(s){return $.tablesorter.formatFloat(s);},type:"numeric"});ts.addParser({id:"currency",is:function(s){return/^[£$€?.]/.test(s);},format:function(s){return $.tablesorter.formatFloat(s.replace(new RegExp(/[^0-9.]/g),""));},type:"numeric"});ts.addParser({id:"ipAddress",is:function(s){return/^\d{2,3}[\.]\d{2,3}[\.]\d{2,3}[\.]\d{2,3}$/.test(s);},format:function(s){var a=s.split("."),r="",l=a.length;for(var i=0;i<l;i++){var item=a[i];if(item.length==2){r+="0"+item;}else{r+=item;}}return $.tablesorter.formatFloat(r);},type:"numeric"});ts.addParser({id:"url",is:function(s){return/^(https?|ftp|file):\/\/$/.test(s);},format:function(s){return jQuery.trim(s.replace(new RegExp(/(https?|ftp|file):\/\//),''));},type:"text"});ts.addParser({id:"isoDate",is:function(s){return/^\d{4}[\/-]\d{1,2}[\/-]\d{1,2}$/.test(s);},format:function(s){return 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data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/print.css ADDED

@@ -0,0 +1,12 @@
+/* Hide controls */
+  body {
+    color: #000000;
+    background-color: #ffffff;
+  }
+/* Hide controls */
+  div.filters {
+    display: none;
+  }

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/rcov.js ADDED

@@ -0,0 +1,42 @@
+function toggleCode( id ) {
+  if ( document.getElementById ) {
+    elem = document.getElementById( id );
+  } else if ( document.all ) {
+    elem = eval( "document.all." + id );
+  } else {
+    return false;
+  }
+  elemStyle = elem.style;
+  if ( elemStyle.display != "block" ) {
+    elemStyle.display = "block";
+  } else {
+    elemStyle.display = "none";
+  }
+  return true;
+}
+function restripe() {
+  i = 0;
+  $('table#report_table tbody tr').each(function(){
+    if (this.style.display != "none") {
+      i += 1;
+      classes = this.className.split(" ");
+      if ($.inArray("even",classes) != -1) {
+        classes.splice($.inArray("even",classes),1);
+      } else if ($.inArray("odd",classes) != -1) {
+        classes.splice($.inArray("odd",classes),1);
+      }
+      if (i % 2 === 0) {
+        this.className = classes.join(" ") + " odd";
+      } else {
+        this.className = classes.join(" ") + " even";
+      }
+    }
+  });
+}
+// Fix IE's lack of support for indexOf (!)
+if (!Array.indexOf) { Array.prototype.indexOf = function(obj){ for(var i=0; i<this.length; i++){ if(this[i]==obj){return i;} } return -1; }}

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/screen.css ADDED

@@ -0,0 +1,270 @@
+/* @group General */
+  body {
+    font-family: Verdana, Helvetica, Arial, Sans-Serif;
+    font-size: 12px;
+    color: #4C4C4C;
+    background-color: #F4F2ED;
+    padding: 1em;
+  }
+  a:link {
+    color: #191919;
+  }
+  a:visited {
+    color: #191919;
+  }
+  pre, code {
+    color: #000000;
+    font-family: "Bitstream Vera Sans Mono","Monaco","Courier New",monospace;
+    font-size: 95%;
+    line-height: 1.3em;
+    margin-top: 0;
+    margin-bottom: 0;
+    padding: 0;
+    word-wrap: break-word;
+  }
+  h1, h2, h3, h4, h5, h6 {
+    margin: 0em 0em 1em 0em;
+    color: #666666;
+  }
+  h1 {
+    display: block;
+    font-size: 2em;
+    letter-spacing: -1px;
+  }
+  h2 {
+    margin-top: -1em;
+  }
+  fieldset {
+    display: inline;
+    border: 0px;
+    padding: 0px;
+    margin-right: 1em;
+  }
+  div.filters {
+    margin-bottom: 1em;
+  }
+  .hidden {
+    display: none;
+  }
+/* @end */
+/* @group Cross-References */
+  span.cross-ref-title {
+    font-size: 140%;
+  }
+  span.cross-ref a {
+    text-decoration: none;
+  }
+  span.cross-ref {
+    background-color:#f3f7fa;
+    border: 1px dashed #333;
+    margin: 1em;
+    padding: 0.5em;
+    overflow: hidden;
+  }
+  a.crossref-toggle {
+    text-decoration: none;
+  }
+/* @end */
+/* @group Report Table */
+  div.report_table_wrapper {
+    min-width: 900px;
+  }
+  table.report {
+    border-collapse: collapse;
+    border: 1px solid #666666;
+    width: 100%;
+    margin-bottom: 1em;
+  }
+  table.report tr {
+    line-height: 1.75em;
+  }
+  table.report th {
+    background: #666666;
+    color: #ffffff;
+    text-align: right;
+    text-transform: uppercase;
+    font-size: .8em;
+    font-weight: bold;
+    padding: 0em .5em;
+    border: 1px solid #666666;
+  }
+  table.report tfoot tr {
+    background: #dddddd;
+    font-weight: bold;
+    padding: .5em;
+    border: 1px solid #666666;
+  }
+  th.left_align, td.left_align {
+    text-align: left !important;
+  }
+  th.right_align, td.right_align {
+    text-align: right;
+    padding-right: 2em !important;
+  }
+  table.report th.header:hover {
+    cursor:	pointer;
+    text-decoration: underline;
+  }
+  table.report th.headerSortUp:after{
+    content: "\25BC";
+    margin-left: 1em;
+  }
+  table.report th.headerSortDown:after {
+    content: "\25B2";
+    margin-left: 1em;
+  }
+  table.report tr.summary_row {
+    background: #cccccc;
+    border: 1px solid #cccccc;
+  }
+  table.report tr.summary_row td {
+    padding-left: .2em !important;
+    color: #333333;
+    font-weight: bold;
+  }
+  table.report td {
+    padding: .2em .5em .2em .5em;
+  }
+  table.report td a {
+    text-decoration: none;
+  }
+  table.report tbody tr:hover {
+    background: #cccccc !important;
+  }
+  table.report tr.summary_row td {
+    border-bottom: 1px solid #aaaaaa;
+  }
+  table.report tr {
+    background-color: #eeeeee;
+  }
+  table.report tr.odd {
+    background-color: #dddddd;
+  }
+/* @end */
+/* @group Percentage Graphs */
+  div.percent_graph_legend {
+    width: 5.5em;
+    float: left;
+    margin: .5em 1em .5em 0em;
+    height: 1em;
+    line-height: 1em;
+  }
+  div.percent_graph {
+    height: 1em;
+    border: #333333 1px solid;
+    empty-cells: show;
+    padding: 0px;
+    border-collapse: collapse;
+    width: 100px !important;
+    float: left;
+    margin: .5em 1em .5em 0em;
+  }
+  div.percent_graph div {
+  	float: left;
+    height: 1em;
+    padding: 0px !important;
+  }
+  div.percent_graph div.covered {
+    background: #649632;
+  }
+  div.percent_graph div.uncovered {
+    background: #a92730;
+  }
+  div.percent_graph div.NA {
+    background: #eaeaea;
+  }
+/* @end */
+/* @group Details page */
+  table.details {
+    margin-top: 1em;
+    border-collapse: collapse;
+    width: 100%;
+    border: 1px solid #666666;
+  }
+  table.details tr {
+  	line-height: 1.75em;
+	}
+  table.details td {
+  	padding: .25em;
+	}
+  span.inferred, span.inferred1, span.marked, span.marked1, span.uncovered, span.uncovered1 {
+    display: block;
+    padding: .25em;
+  }
+  tr.inferred td, span.inferred {
+    background-color: #e0dedb;
+  }
+  tr.inferred1 td, span.inferred1 {
+    background-color: #e0dedb;
+  }
+  tr.marked td, span.marked, span.marked1 {
+    background-color: #bed2be;
+  }
+  tr.uncovered td, span.uncovered {
+    background-color: #ce8b8c;
+  }
+  tr.uncovered1 td, span.uncovered1 {
+    background-color: #ce8b8c;
+  }
+  div.key {
+    border: 1px solid #666666;
+    margin: 1em 0em;
+  }
+/* @end */