bio-velvet_underground 0.0.1
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- checksums.yaml +7 -0
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- data/ext/src/third-party/zlib-1.2.3/uncompr.c +61 -0
- data/ext/src/third-party/zlib-1.2.3/win32/DLL_FAQ.txt +397 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.bor +107 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.emx +69 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.gcc +141 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.msc +126 -0
- data/ext/src/third-party/zlib-1.2.3/win32/VisualC.txt +3 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib.def +60 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib1.rc +39 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.in.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.3 +159 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.h +1357 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.c +318 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.h +269 -0
- data/lib/bio-velvet_underground.rb +12 -0
- data/lib/bio-velvet_underground/external/VERSION +1 -0
- data/lib/bio-velvet_underground/velvet_underground.rb +72 -0
- data/spec/binary_sequence_store_spec.rb +27 -0
- data/spec/data/1/CnyUnifiedSeq +0 -0
- data/spec/spec_helper.rb +31 -0
- metadata +456 -0
@@ -0,0 +1,191 @@
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/* zpipe.c: example of proper use of zlib's inflate() and deflate()
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Not copyrighted -- provided to the public domain
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Version 1.2 9 November 2004 Mark Adler */
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/* Version history:
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1.0 30 Oct 2004 First version
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1.1 8 Nov 2004 Add void casting for unused return values
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Use switch statement for inflate() return values
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1.2 9 Nov 2004 Add assertions to document zlib guarantees
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1.3 6 Apr 2005 Remove incorrect assertion in inf()
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*/
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#include <stdio.h>
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#include <string.h>
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#include <assert.h>
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#include "zlib.h"
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#define CHUNK 16384
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/* Compress from file source to file dest until EOF on source.
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def() returns Z_OK on success, Z_MEM_ERROR if memory could not be
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allocated for processing, Z_STREAM_ERROR if an invalid compression
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level is supplied, Z_VERSION_ERROR if the version of zlib.h and the
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version of the library linked do not match, or Z_ERRNO if there is
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an error reading or writing the files. */
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int def(FILE *source, FILE *dest, int level)
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{
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int ret, flush;
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unsigned have;
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z_stream strm;
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char in[CHUNK];
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char out[CHUNK];
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/* allocate deflate state */
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strm.zalloc = Z_NULL;
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strm.zfree = Z_NULL;
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strm.opaque = Z_NULL;
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ret = deflateInit(&strm, level);
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if (ret != Z_OK)
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return ret;
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/* compress until end of file */
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do {
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strm.avail_in = fread(in, 1, CHUNK, source);
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if (ferror(source)) {
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(void)deflateEnd(&strm);
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return Z_ERRNO;
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}
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flush = feof(source) ? Z_FINISH : Z_NO_FLUSH;
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strm.next_in = in;
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/* run deflate() on input until output buffer not full, finish
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compression if all of source has been read in */
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do {
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strm.avail_out = CHUNK;
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strm.next_out = out;
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ret = deflate(&strm, flush); /* no bad return value */
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assert(ret != Z_STREAM_ERROR); /* state not clobbered */
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have = CHUNK - strm.avail_out;
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if (fwrite(out, 1, have, dest) != have || ferror(dest)) {
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(void)deflateEnd(&strm);
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return Z_ERRNO;
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}
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} while (strm.avail_out == 0);
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assert(strm.avail_in == 0); /* all input will be used */
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/* done when last data in file processed */
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} while (flush != Z_FINISH);
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assert(ret == Z_STREAM_END); /* stream will be complete */
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/* clean up and return */
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(void)deflateEnd(&strm);
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return Z_OK;
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}
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/* Decompress from file source to file dest until stream ends or EOF.
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inf() returns Z_OK on success, Z_MEM_ERROR if memory could not be
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allocated for processing, Z_DATA_ERROR if the deflate data is
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invalid or incomplete, Z_VERSION_ERROR if the version of zlib.h and
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the version of the library linked do not match, or Z_ERRNO if there
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is an error reading or writing the files. */
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int inf(FILE *source, FILE *dest)
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{
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int ret;
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unsigned have;
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z_stream strm;
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char in[CHUNK];
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char out[CHUNK];
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/* allocate inflate state */
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strm.zalloc = Z_NULL;
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strm.zfree = Z_NULL;
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strm.opaque = Z_NULL;
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strm.avail_in = 0;
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strm.next_in = Z_NULL;
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ret = inflateInit(&strm);
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if (ret != Z_OK)
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return ret;
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/* decompress until deflate stream ends or end of file */
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do {
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strm.avail_in = fread(in, 1, CHUNK, source);
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if (ferror(source)) {
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(void)inflateEnd(&strm);
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return Z_ERRNO;
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}
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if (strm.avail_in == 0)
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break;
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strm.next_in = in;
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/* run inflate() on input until output buffer not full */
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do {
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strm.avail_out = CHUNK;
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strm.next_out = out;
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ret = inflate(&strm, Z_NO_FLUSH);
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assert(ret != Z_STREAM_ERROR); /* state not clobbered */
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switch (ret) {
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case Z_NEED_DICT:
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ret = Z_DATA_ERROR; /* and fall through */
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case Z_DATA_ERROR:
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case Z_MEM_ERROR:
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(void)inflateEnd(&strm);
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return ret;
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}
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have = CHUNK - strm.avail_out;
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if (fwrite(out, 1, have, dest) != have || ferror(dest)) {
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(void)inflateEnd(&strm);
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return Z_ERRNO;
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}
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} while (strm.avail_out == 0);
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/* done when inflate() says it's done */
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} while (ret != Z_STREAM_END);
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/* clean up and return */
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(void)inflateEnd(&strm);
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return ret == Z_STREAM_END ? Z_OK : Z_DATA_ERROR;
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}
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/* report a zlib or i/o error */
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void zerr(int ret)
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{
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fputs("zpipe: ", stderr);
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switch (ret) {
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case Z_ERRNO:
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if (ferror(stdin))
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fputs("error reading stdin\n", stderr);
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if (ferror(stdout))
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fputs("error writing stdout\n", stderr);
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break;
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case Z_STREAM_ERROR:
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fputs("invalid compression level\n", stderr);
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break;
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case Z_DATA_ERROR:
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fputs("invalid or incomplete deflate data\n", stderr);
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break;
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case Z_MEM_ERROR:
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fputs("out of memory\n", stderr);
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break;
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case Z_VERSION_ERROR:
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fputs("zlib version mismatch!\n", stderr);
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}
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}
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/* compress or decompress from stdin to stdout */
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int main(int argc, char **argv)
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{
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int ret;
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/* do compression if no arguments */
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if (argc == 1) {
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ret = def(stdin, stdout, Z_DEFAULT_COMPRESSION);
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if (ret != Z_OK)
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zerr(ret);
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return ret;
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}
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/* do decompression if -d specified */
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else if (argc == 2 && strcmp(argv[1], "-d") == 0) {
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ret = inf(stdin, stdout);
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if (ret != Z_OK)
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zerr(ret);
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return ret;
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}
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/* otherwise, report usage */
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else {
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fputs("zpipe usage: zpipe [-d] < source > dest\n", stderr);
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return 1;
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}
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}
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/* zran.c -- example of zlib/gzip stream indexing and random access
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* Copyright (C) 2005 Mark Adler
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* For conditions of distribution and use, see copyright notice in zlib.h
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Version 1.0 29 May 2005 Mark Adler */
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/* Illustrate the use of Z_BLOCK, inflatePrime(), and inflateSetDictionary()
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for random access of a compressed file. A file containing a zlib or gzip
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stream is provided on the command line. The compressed stream is decoded in
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its entirety, and an index built with access points about every SPAN bytes
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in the uncompressed output. The compressed file is left open, and can then
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be read randomly, having to decompress on the average SPAN/2 uncompressed
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bytes before getting to the desired block of data.
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An access point can be created at the start of any deflate block, by saving
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the starting file offset and bit of that block, and the 32K bytes of
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uncompressed data that precede that block. Also the uncompressed offset of
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that block is saved to provide a referece for locating a desired starting
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point in the uncompressed stream. build_index() works by decompressing the
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input zlib or gzip stream a block at a time, and at the end of each block
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deciding if enough uncompressed data has gone by to justify the creation of
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a new access point. If so, that point is saved in a data structure that
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grows as needed to accommodate the points.
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To use the index, an offset in the uncompressed data is provided, for which
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the latest accees point at or preceding that offset is located in the index.
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The input file is positioned to the specified location in the index, and if
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necessary the first few bits of the compressed data is read from the file.
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inflate is initialized with those bits and the 32K of uncompressed data, and
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the decompression then proceeds until the desired offset in the file is
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reached. Then the decompression continues to read the desired uncompressed
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data from the file.
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Another approach would be to generate the index on demand. In that case,
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requests for random access reads from the compressed data would try to use
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the index, but if a read far enough past the end of the index is required,
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then further index entries would be generated and added.
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There is some fair bit of overhead to starting inflation for the random
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access, mainly copying the 32K byte dictionary. So if small pieces of the
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file are being accessed, it would make sense to implement a cache to hold
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some lookahead and avoid many calls to extract() for small lengths.
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Another way to build an index would be to use inflateCopy(). That would
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not be constrained to have access points at block boundaries, but requires
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more memory per access point, and also cannot be saved to file due to the
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use of pointers in the state. The approach here allows for storage of the
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index in a file.
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*/
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|
50
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#include <stdio.h>
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51
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#include <stdlib.h>
|
52
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#include <string.h>
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53
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#include "zlib.h"
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54
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|
55
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#define local static
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#define SPAN 1048576L /* desired distance between access points */
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#define WINSIZE 32768U /* sliding window size */
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59
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#define CHUNK 16384 /* file input buffer size */
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60
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/* access point entry */
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struct point {
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63
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off_t out; /* corresponding offset in uncompressed data */
|
64
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off_t in; /* offset in input file of first full byte */
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65
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int bits; /* number of bits (1-7) from byte at in - 1, or 0 */
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66
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unsigned char window[WINSIZE]; /* preceding 32K of uncompressed data */
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67
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};
|
68
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+
|
69
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/* access point list */
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70
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struct access {
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71
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int have; /* number of list entries filled in */
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72
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int size; /* number of list entries allocated */
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73
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struct point *list; /* allocated list */
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74
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};
|
75
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|
76
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/* Deallocate an index built by build_index() */
|
77
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local void free_index(struct access *index)
|
78
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{
|
79
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if (index != NULL) {
|
80
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free(index->list);
|
81
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free(index);
|
82
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}
|
83
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}
|
84
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+
|
85
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/* Add an entry to the access point list. If out of memory, deallocate the
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86
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existing list and return NULL. */
|
87
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local struct access *addpoint(struct access *index, int bits,
|
88
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off_t in, off_t out, unsigned left, unsigned char *window)
|
89
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{
|
90
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struct point *next;
|
91
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+
|
92
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/* if list is empty, create it (start with eight points) */
|
93
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if (index == NULL) {
|
94
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index = malloc(sizeof(struct access));
|
95
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if (index == NULL) return NULL;
|
96
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index->list = malloc(sizeof(struct point) << 3);
|
97
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+
if (index->list == NULL) {
|
98
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free(index);
|
99
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return NULL;
|
100
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+
}
|
101
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index->size = 8;
|
102
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index->have = 0;
|
103
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}
|
104
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+
|
105
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/* if list is full, make it bigger */
|
106
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+
else if (index->have == index->size) {
|
107
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index->size <<= 1;
|
108
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next = realloc(index->list, sizeof(struct point) * index->size);
|
109
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+
if (next == NULL) {
|
110
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free_index(index);
|
111
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return NULL;
|
112
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+
}
|
113
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+
index->list = next;
|
114
|
+
}
|
115
|
+
|
116
|
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/* fill in entry and increment how many we have */
|
117
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next = index->list + index->have;
|
118
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next->bits = bits;
|
119
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next->in = in;
|
120
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next->out = out;
|
121
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if (left)
|
122
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+
memcpy(next->window, window + WINSIZE - left, left);
|
123
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+
if (left < WINSIZE)
|
124
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+
memcpy(next->window + left, window, WINSIZE - left);
|
125
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+
index->have++;
|
126
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+
|
127
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+
/* return list, possibly reallocated */
|
128
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return index;
|
129
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+
}
|
130
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+
|
131
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+
/* Make one entire pass through the compressed stream and build an index, with
|
132
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access points about every span bytes of uncompressed output -- span is
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133
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+
chosen to balance the speed of random access against the memory requirements
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134
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of the list, about 32K bytes per access point. Note that data after the end
|
135
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of the first zlib or gzip stream in the file is ignored. build_index()
|
136
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+
returns the number of access points on success (>= 1), Z_MEM_ERROR for out
|
137
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+
of memory, Z_DATA_ERROR for an error in the input file, or Z_ERRNO for a
|
138
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+
file read error. On success, *built points to the resulting index. */
|
139
|
+
local int build_index(FILE *in, off_t span, struct access **built)
|
140
|
+
{
|
141
|
+
int ret;
|
142
|
+
off_t totin, totout; /* our own total counters to avoid 4GB limit */
|
143
|
+
off_t last; /* totout value of last access point */
|
144
|
+
struct access *index; /* access points being generated */
|
145
|
+
z_stream strm;
|
146
|
+
unsigned char input[CHUNK];
|
147
|
+
unsigned char window[WINSIZE];
|
148
|
+
|
149
|
+
/* initialize inflate */
|
150
|
+
strm.zalloc = Z_NULL;
|
151
|
+
strm.zfree = Z_NULL;
|
152
|
+
strm.opaque = Z_NULL;
|
153
|
+
strm.avail_in = 0;
|
154
|
+
strm.next_in = Z_NULL;
|
155
|
+
ret = inflateInit2(&strm, 47); /* automatic zlib or gzip decoding */
|
156
|
+
if (ret != Z_OK)
|
157
|
+
return ret;
|
158
|
+
|
159
|
+
/* inflate the input, maintain a sliding window, and build an index -- this
|
160
|
+
also validates the integrity of the compressed data using the check
|
161
|
+
information at the end of the gzip or zlib stream */
|
162
|
+
totin = totout = last = 0;
|
163
|
+
index = NULL; /* will be allocated by first addpoint() */
|
164
|
+
strm.avail_out = 0;
|
165
|
+
do {
|
166
|
+
/* get some compressed data from input file */
|
167
|
+
strm.avail_in = fread(input, 1, CHUNK, in);
|
168
|
+
if (ferror(in)) {
|
169
|
+
ret = Z_ERRNO;
|
170
|
+
goto build_index_error;
|
171
|
+
}
|
172
|
+
if (strm.avail_in == 0) {
|
173
|
+
ret = Z_DATA_ERROR;
|
174
|
+
goto build_index_error;
|
175
|
+
}
|
176
|
+
strm.next_in = input;
|
177
|
+
|
178
|
+
/* process all of that, or until end of stream */
|
179
|
+
do {
|
180
|
+
/* reset sliding window if necessary */
|
181
|
+
if (strm.avail_out == 0) {
|
182
|
+
strm.avail_out = WINSIZE;
|
183
|
+
strm.next_out = window;
|
184
|
+
}
|
185
|
+
|
186
|
+
/* inflate until out of input, output, or at end of block --
|
187
|
+
update the total input and output counters */
|
188
|
+
totin += strm.avail_in;
|
189
|
+
totout += strm.avail_out;
|
190
|
+
ret = inflate(&strm, Z_BLOCK); /* return at end of block */
|
191
|
+
totin -= strm.avail_in;
|
192
|
+
totout -= strm.avail_out;
|
193
|
+
if (ret == Z_NEED_DICT)
|
194
|
+
ret = Z_DATA_ERROR;
|
195
|
+
if (ret == Z_MEM_ERROR || ret == Z_DATA_ERROR)
|
196
|
+
goto build_index_error;
|
197
|
+
if (ret == Z_STREAM_END)
|
198
|
+
break;
|
199
|
+
|
200
|
+
/* if at end of block, consider adding an index entry (note that if
|
201
|
+
data_type indicates an end-of-block, then all of the
|
202
|
+
uncompressed data from that block has been delivered, and none
|
203
|
+
of the compressed data after that block has been consumed,
|
204
|
+
except for up to seven bits) -- the totout == 0 provides an
|
205
|
+
entry point after the zlib or gzip header, and assures that the
|
206
|
+
index always has at least one access point; we avoid creating an
|
207
|
+
access point after the last block by checking bit 6 of data_type
|
208
|
+
*/
|
209
|
+
if ((strm.data_type & 128) && !(strm.data_type & 64) &&
|
210
|
+
(totout == 0 || totout - last > span)) {
|
211
|
+
index = addpoint(index, strm.data_type & 7, totin,
|
212
|
+
totout, strm.avail_out, window);
|
213
|
+
if (index == NULL) {
|
214
|
+
ret = Z_MEM_ERROR;
|
215
|
+
goto build_index_error;
|
216
|
+
}
|
217
|
+
last = totout;
|
218
|
+
}
|
219
|
+
} while (strm.avail_in != 0);
|
220
|
+
} while (ret != Z_STREAM_END);
|
221
|
+
|
222
|
+
/* clean up and return index (release unused entries in list) */
|
223
|
+
(void)inflateEnd(&strm);
|
224
|
+
index = realloc(index, sizeof(struct point) * index->have);
|
225
|
+
index->size = index->have;
|
226
|
+
*built = index;
|
227
|
+
return index->size;
|
228
|
+
|
229
|
+
/* return error */
|
230
|
+
build_index_error:
|
231
|
+
(void)inflateEnd(&strm);
|
232
|
+
if (index != NULL)
|
233
|
+
free_index(index);
|
234
|
+
return ret;
|
235
|
+
}
|
236
|
+
|
237
|
+
/* Use the index to read len bytes from offset into buf, return bytes read or
|
238
|
+
negative for error (Z_DATA_ERROR or Z_MEM_ERROR). If data is requested past
|
239
|
+
the end of the uncompressed data, then extract() will return a value less
|
240
|
+
than len, indicating how much as actually read into buf. This function
|
241
|
+
should not return a data error unless the file was modified since the index
|
242
|
+
was generated. extract() may also return Z_ERRNO if there is an error on
|
243
|
+
reading or seeking the input file. */
|
244
|
+
local int extract(FILE *in, struct access *index, off_t offset,
|
245
|
+
unsigned char *buf, int len)
|
246
|
+
{
|
247
|
+
int ret, skip;
|
248
|
+
z_stream strm;
|
249
|
+
struct point *here;
|
250
|
+
unsigned char input[CHUNK];
|
251
|
+
unsigned char discard[WINSIZE];
|
252
|
+
|
253
|
+
/* proceed only if something reasonable to do */
|
254
|
+
if (len < 0)
|
255
|
+
return 0;
|
256
|
+
|
257
|
+
/* find where in stream to start */
|
258
|
+
here = index->list;
|
259
|
+
ret = index->have;
|
260
|
+
while (--ret && here[1].out <= offset)
|
261
|
+
here++;
|
262
|
+
|
263
|
+
/* initialize file and inflate state to start there */
|
264
|
+
strm.zalloc = Z_NULL;
|
265
|
+
strm.zfree = Z_NULL;
|
266
|
+
strm.opaque = Z_NULL;
|
267
|
+
strm.avail_in = 0;
|
268
|
+
strm.next_in = Z_NULL;
|
269
|
+
ret = inflateInit2(&strm, -15); /* raw inflate */
|
270
|
+
if (ret != Z_OK)
|
271
|
+
return ret;
|
272
|
+
ret = fseeko(in, here->in - (here->bits ? 1 : 0), SEEK_SET);
|
273
|
+
if (ret == -1)
|
274
|
+
goto extract_ret;
|
275
|
+
if (here->bits) {
|
276
|
+
ret = getc(in);
|
277
|
+
if (ret == -1) {
|
278
|
+
ret = ferror(in) ? Z_ERRNO : Z_DATA_ERROR;
|
279
|
+
goto extract_ret;
|
280
|
+
}
|
281
|
+
(void)inflatePrime(&strm, here->bits, ret >> (8 - here->bits));
|
282
|
+
}
|
283
|
+
(void)inflateSetDictionary(&strm, here->window, WINSIZE);
|
284
|
+
|
285
|
+
/* skip uncompressed bytes until offset reached, then satisfy request */
|
286
|
+
offset -= here->out;
|
287
|
+
strm.avail_in = 0;
|
288
|
+
skip = 1; /* while skipping to offset */
|
289
|
+
do {
|
290
|
+
/* define where to put uncompressed data, and how much */
|
291
|
+
if (offset == 0 && skip) { /* at offset now */
|
292
|
+
strm.avail_out = len;
|
293
|
+
strm.next_out = buf;
|
294
|
+
skip = 0; /* only do this once */
|
295
|
+
}
|
296
|
+
if (offset > WINSIZE) { /* skip WINSIZE bytes */
|
297
|
+
strm.avail_out = WINSIZE;
|
298
|
+
strm.next_out = discard;
|
299
|
+
offset -= WINSIZE;
|
300
|
+
}
|
301
|
+
else if (offset != 0) { /* last skip */
|
302
|
+
strm.avail_out = (unsigned)offset;
|
303
|
+
strm.next_out = discard;
|
304
|
+
offset = 0;
|
305
|
+
}
|
306
|
+
|
307
|
+
/* uncompress until avail_out filled, or end of stream */
|
308
|
+
do {
|
309
|
+
if (strm.avail_in == 0) {
|
310
|
+
strm.avail_in = fread(input, 1, CHUNK, in);
|
311
|
+
if (ferror(in)) {
|
312
|
+
ret = Z_ERRNO;
|
313
|
+
goto extract_ret;
|
314
|
+
}
|
315
|
+
if (strm.avail_in == 0) {
|
316
|
+
ret = Z_DATA_ERROR;
|
317
|
+
goto extract_ret;
|
318
|
+
}
|
319
|
+
strm.next_in = input;
|
320
|
+
}
|
321
|
+
ret = inflate(&strm, Z_NO_FLUSH); /* normal inflate */
|
322
|
+
if (ret == Z_NEED_DICT)
|
323
|
+
ret = Z_DATA_ERROR;
|
324
|
+
if (ret == Z_MEM_ERROR || ret == Z_DATA_ERROR)
|
325
|
+
goto extract_ret;
|
326
|
+
if (ret == Z_STREAM_END)
|
327
|
+
break;
|
328
|
+
} while (strm.avail_out != 0);
|
329
|
+
|
330
|
+
/* if reach end of stream, then don't keep trying to get more */
|
331
|
+
if (ret == Z_STREAM_END)
|
332
|
+
break;
|
333
|
+
|
334
|
+
/* do until offset reached and requested data read, or stream ends */
|
335
|
+
} while (skip);
|
336
|
+
|
337
|
+
/* compute number of uncompressed bytes read after offset */
|
338
|
+
ret = skip ? 0 : len - strm.avail_out;
|
339
|
+
|
340
|
+
/* clean up and return bytes read or error */
|
341
|
+
extract_ret:
|
342
|
+
(void)inflateEnd(&strm);
|
343
|
+
return ret;
|
344
|
+
}
|
345
|
+
|
346
|
+
/* Demonstrate the use of build_index() and extract() by processing the file
|
347
|
+
provided on the command line, and the extracting 16K from about 2/3rds of
|
348
|
+
the way through the uncompressed output, and writing that to stdout. */
|
349
|
+
int main(int argc, char **argv)
|
350
|
+
{
|
351
|
+
int len;
|
352
|
+
off_t offset;
|
353
|
+
FILE *in;
|
354
|
+
struct access *index;
|
355
|
+
unsigned char buf[CHUNK];
|
356
|
+
|
357
|
+
/* open input file */
|
358
|
+
if (argc != 2) {
|
359
|
+
fprintf(stderr, "usage: zran file.gz\n");
|
360
|
+
return 1;
|
361
|
+
}
|
362
|
+
in = fopen(argv[1], "rb");
|
363
|
+
if (in == NULL) {
|
364
|
+
fprintf(stderr, "zran: could not open %s for reading\n", argv[1]);
|
365
|
+
return 1;
|
366
|
+
}
|
367
|
+
|
368
|
+
/* build index */
|
369
|
+
len = build_index(in, SPAN, &index);
|
370
|
+
if (len < 0) {
|
371
|
+
fclose(in);
|
372
|
+
switch (len) {
|
373
|
+
case Z_MEM_ERROR:
|
374
|
+
fprintf(stderr, "zran: out of memory\n");
|
375
|
+
break;
|
376
|
+
case Z_DATA_ERROR:
|
377
|
+
fprintf(stderr, "zran: compressed data error in %s\n", argv[1]);
|
378
|
+
break;
|
379
|
+
case Z_ERRNO:
|
380
|
+
fprintf(stderr, "zran: read error on %s\n", argv[1]);
|
381
|
+
break;
|
382
|
+
default:
|
383
|
+
fprintf(stderr, "zran: error %d while building index\n", len);
|
384
|
+
}
|
385
|
+
return 1;
|
386
|
+
}
|
387
|
+
fprintf(stderr, "zran: built index with %d access points\n", len);
|
388
|
+
|
389
|
+
/* use index by reading some bytes from an arbitrary offset */
|
390
|
+
offset = (index->list[index->have - 1].out << 1) / 3;
|
391
|
+
len = extract(in, index, offset, buf, CHUNK);
|
392
|
+
if (len < 0)
|
393
|
+
fprintf(stderr, "zran: extraction failed: %s error\n",
|
394
|
+
len == Z_MEM_ERROR ? "out of memory" : "input corrupted");
|
395
|
+
else {
|
396
|
+
fwrite(buf, 1, len, stdout);
|
397
|
+
fprintf(stderr, "zran: extracted %d bytes at %llu\n", len, offset);
|
398
|
+
}
|
399
|
+
|
400
|
+
/* clean up and exit */
|
401
|
+
free_index(index);
|
402
|
+
fclose(in);
|
403
|
+
return 0;
|
404
|
+
}
|