bio-velvet_underground 0.0.1

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Files changed (286) hide show
  1. checksums.yaml +7 -0
  2. data/.document +5 -0
  3. data/.gitmodules +3 -0
  4. data/.travis.yml +13 -0
  5. data/Gemfile +19 -0
  6. data/LICENSE.txt +20 -0
  7. data/README.md +53 -0
  8. data/Rakefile +51 -0
  9. data/VERSION +1 -0
  10. data/ext/bioruby.patch +60 -0
  11. data/ext/mkrf_conf.rb +50 -0
  12. data/ext/src/Makefile +125 -0
  13. data/ext/src/src/allocArray.c +305 -0
  14. data/ext/src/src/allocArray.h +86 -0
  15. data/ext/src/src/autoOpen.c +107 -0
  16. data/ext/src/src/autoOpen.h +18 -0
  17. data/ext/src/src/binarySequences.c +813 -0
  18. data/ext/src/src/binarySequences.h +125 -0
  19. data/ext/src/src/concatenatedGraph.c +233 -0
  20. data/ext/src/src/concatenatedGraph.h +30 -0
  21. data/ext/src/src/concatenatedPreGraph.c +262 -0
  22. data/ext/src/src/concatenatedPreGraph.h +29 -0
  23. data/ext/src/src/correctedGraph.c +2642 -0
  24. data/ext/src/src/correctedGraph.h +32 -0
  25. data/ext/src/src/dfib.c +509 -0
  26. data/ext/src/src/dfib.h +69 -0
  27. data/ext/src/src/dfibHeap.c +89 -0
  28. data/ext/src/src/dfibHeap.h +39 -0
  29. data/ext/src/src/dfibpriv.h +105 -0
  30. data/ext/src/src/fib.c +628 -0
  31. data/ext/src/src/fib.h +78 -0
  32. data/ext/src/src/fibHeap.c +79 -0
  33. data/ext/src/src/fibHeap.h +41 -0
  34. data/ext/src/src/fibpriv.h +110 -0
  35. data/ext/src/src/globals.h +153 -0
  36. data/ext/src/src/graph.c +3983 -0
  37. data/ext/src/src/graph.h +233 -0
  38. data/ext/src/src/graphReConstruction.c +1472 -0
  39. data/ext/src/src/graphReConstruction.h +30 -0
  40. data/ext/src/src/graphStats.c +2167 -0
  41. data/ext/src/src/graphStats.h +72 -0
  42. data/ext/src/src/kmer.c +652 -0
  43. data/ext/src/src/kmer.h +73 -0
  44. data/ext/src/src/kmerOccurenceTable.c +236 -0
  45. data/ext/src/src/kmerOccurenceTable.h +44 -0
  46. data/ext/src/src/kseq.h +223 -0
  47. data/ext/src/src/locallyCorrectedGraph.c +557 -0
  48. data/ext/src/src/locallyCorrectedGraph.h +40 -0
  49. data/ext/src/src/passageMarker.c +677 -0
  50. data/ext/src/src/passageMarker.h +137 -0
  51. data/ext/src/src/preGraph.c +1717 -0
  52. data/ext/src/src/preGraph.h +106 -0
  53. data/ext/src/src/preGraphConstruction.c +990 -0
  54. data/ext/src/src/preGraphConstruction.h +26 -0
  55. data/ext/src/src/readCoherentGraph.c +557 -0
  56. data/ext/src/src/readCoherentGraph.h +30 -0
  57. data/ext/src/src/readSet.c +1734 -0
  58. data/ext/src/src/readSet.h +67 -0
  59. data/ext/src/src/recycleBin.c +199 -0
  60. data/ext/src/src/recycleBin.h +58 -0
  61. data/ext/src/src/roadMap.c +342 -0
  62. data/ext/src/src/roadMap.h +65 -0
  63. data/ext/src/src/run.c +318 -0
  64. data/ext/src/src/run.h +52 -0
  65. data/ext/src/src/run2.c +712 -0
  66. data/ext/src/src/scaffold.c +1876 -0
  67. data/ext/src/src/scaffold.h +64 -0
  68. data/ext/src/src/shortReadPairs.c +1243 -0
  69. data/ext/src/src/shortReadPairs.h +32 -0
  70. data/ext/src/src/splay.c +259 -0
  71. data/ext/src/src/splay.h +43 -0
  72. data/ext/src/src/splayTable.c +1315 -0
  73. data/ext/src/src/splayTable.h +31 -0
  74. data/ext/src/src/tightString.c +362 -0
  75. data/ext/src/src/tightString.h +82 -0
  76. data/ext/src/src/utility.c +199 -0
  77. data/ext/src/src/utility.h +98 -0
  78. data/ext/src/third-party/zlib-1.2.3/ChangeLog +855 -0
  79. data/ext/src/third-party/zlib-1.2.3/FAQ +339 -0
  80. data/ext/src/third-party/zlib-1.2.3/INDEX +51 -0
  81. data/ext/src/third-party/zlib-1.2.3/Makefile +154 -0
  82. data/ext/src/third-party/zlib-1.2.3/Makefile.in +154 -0
  83. data/ext/src/third-party/zlib-1.2.3/README +125 -0
  84. data/ext/src/third-party/zlib-1.2.3/adler32.c +149 -0
  85. data/ext/src/third-party/zlib-1.2.3/algorithm.txt +209 -0
  86. data/ext/src/third-party/zlib-1.2.3/amiga/Makefile.pup +66 -0
  87. data/ext/src/third-party/zlib-1.2.3/amiga/Makefile.sas +65 -0
  88. data/ext/src/third-party/zlib-1.2.3/as400/bndsrc +132 -0
  89. data/ext/src/third-party/zlib-1.2.3/as400/compile.clp +123 -0
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  92. data/ext/src/third-party/zlib-1.2.3/compress.c +79 -0
  93. data/ext/src/third-party/zlib-1.2.3/configure +459 -0
  94. data/ext/src/third-party/zlib-1.2.3/contrib/README.contrib +71 -0
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  107. data/ext/src/third-party/zlib-1.2.3/contrib/asm586/README.586 +43 -0
  108. data/ext/src/third-party/zlib-1.2.3/contrib/asm586/match.S +364 -0
  109. data/ext/src/third-party/zlib-1.2.3/contrib/asm686/README.686 +34 -0
  110. data/ext/src/third-party/zlib-1.2.3/contrib/asm686/match.S +329 -0
  111. data/ext/src/third-party/zlib-1.2.3/contrib/blast/Makefile +8 -0
  112. data/ext/src/third-party/zlib-1.2.3/contrib/blast/README +4 -0
  113. data/ext/src/third-party/zlib-1.2.3/contrib/blast/blast.c +444 -0
  114. data/ext/src/third-party/zlib-1.2.3/contrib/blast/blast.h +71 -0
  115. data/ext/src/third-party/zlib-1.2.3/contrib/blast/test.pk +0 -0
  116. data/ext/src/third-party/zlib-1.2.3/contrib/blast/test.txt +1 -0
  117. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/ZLib.pas +557 -0
  118. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/ZLibConst.pas +11 -0
  119. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/readme.txt +76 -0
  120. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/zlibd32.mak +93 -0
  121. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib.build +33 -0
  122. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib.chm +0 -0
  123. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib.sln +21 -0
  124. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/AssemblyInfo.cs +58 -0
  125. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/ChecksumImpl.cs +202 -0
  126. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/CircularBuffer.cs +83 -0
  127. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/CodecBase.cs +198 -0
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  129. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/DotZLib.cs +288 -0
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  131. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/GZipStream.cs +301 -0
  132. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/Inflater.cs +105 -0
  133. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/UnitTests.cs +274 -0
  134. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/LICENSE_1_0.txt +23 -0
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  136. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/README +1 -0
  137. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/infback9.c +608 -0
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  141. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/inftree9.c +323 -0
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  145. data/ext/src/third-party/zlib-1.2.3/contrib/iostream/test.cpp +24 -0
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  250. data/ext/src/third-party/zlib-1.2.3/old/README +3 -0
  251. data/ext/src/third-party/zlib-1.2.3/old/descrip.mms +48 -0
  252. data/ext/src/third-party/zlib-1.2.3/old/os2/Makefile.os2 +136 -0
  253. data/ext/src/third-party/zlib-1.2.3/old/os2/zlib.def +51 -0
  254. data/ext/src/third-party/zlib-1.2.3/old/visual-basic.txt +160 -0
  255. data/ext/src/third-party/zlib-1.2.3/old/zlib.html +971 -0
  256. data/ext/src/third-party/zlib-1.2.3/projects/README.projects +41 -0
  257. data/ext/src/third-party/zlib-1.2.3/projects/visualc6/README.txt +73 -0
  258. data/ext/src/third-party/zlib-1.2.3/projects/visualc6/example.dsp +278 -0
  259. data/ext/src/third-party/zlib-1.2.3/projects/visualc6/minigzip.dsp +278 -0
  260. data/ext/src/third-party/zlib-1.2.3/projects/visualc6/zlib.dsp +609 -0
  261. data/ext/src/third-party/zlib-1.2.3/projects/visualc6/zlib.dsw +59 -0
  262. data/ext/src/third-party/zlib-1.2.3/qnx/package.qpg +141 -0
  263. data/ext/src/third-party/zlib-1.2.3/trees.c +1219 -0
  264. data/ext/src/third-party/zlib-1.2.3/trees.h +128 -0
  265. data/ext/src/third-party/zlib-1.2.3/uncompr.c +61 -0
  266. data/ext/src/third-party/zlib-1.2.3/win32/DLL_FAQ.txt +397 -0
  267. data/ext/src/third-party/zlib-1.2.3/win32/Makefile.bor +107 -0
  268. data/ext/src/third-party/zlib-1.2.3/win32/Makefile.emx +69 -0
  269. data/ext/src/third-party/zlib-1.2.3/win32/Makefile.gcc +141 -0
  270. data/ext/src/third-party/zlib-1.2.3/win32/Makefile.msc +126 -0
  271. data/ext/src/third-party/zlib-1.2.3/win32/VisualC.txt +3 -0
  272. data/ext/src/third-party/zlib-1.2.3/win32/zlib.def +60 -0
  273. data/ext/src/third-party/zlib-1.2.3/win32/zlib1.rc +39 -0
  274. data/ext/src/third-party/zlib-1.2.3/zconf.h +332 -0
  275. data/ext/src/third-party/zlib-1.2.3/zconf.in.h +332 -0
  276. data/ext/src/third-party/zlib-1.2.3/zlib.3 +159 -0
  277. data/ext/src/third-party/zlib-1.2.3/zlib.h +1357 -0
  278. data/ext/src/third-party/zlib-1.2.3/zutil.c +318 -0
  279. data/ext/src/third-party/zlib-1.2.3/zutil.h +269 -0
  280. data/lib/bio-velvet_underground.rb +12 -0
  281. data/lib/bio-velvet_underground/external/VERSION +1 -0
  282. data/lib/bio-velvet_underground/velvet_underground.rb +72 -0
  283. data/spec/binary_sequence_store_spec.rb +27 -0
  284. data/spec/data/1/CnyUnifiedSeq +0 -0
  285. data/spec/spec_helper.rb +31 -0
  286. metadata +456 -0
@@ -0,0 +1,24 @@
1
+
2
+ #include "zfstream.h"
3
+
4
+ int main() {
5
+
6
+ // Construct a stream object with this filebuffer. Anything sent
7
+ // to this stream will go to standard out.
8
+ gzofstream os( 1, ios::out );
9
+
10
+ // This text is getting compressed and sent to stdout.
11
+ // To prove this, run 'test | zcat'.
12
+ os << "Hello, Mommy" << endl;
13
+
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+ os << setcompressionlevel( Z_NO_COMPRESSION );
15
+ os << "hello, hello, hi, ho!" << endl;
16
+
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+ setcompressionlevel( os, Z_DEFAULT_COMPRESSION )
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+ << "I'm compressing again" << endl;
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+
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+ os.close();
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+
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+ return 0;
23
+
24
+ }
@@ -0,0 +1,329 @@
1
+
2
+ #include "zfstream.h"
3
+
4
+ gzfilebuf::gzfilebuf() :
5
+ file(NULL),
6
+ mode(0),
7
+ own_file_descriptor(0)
8
+ { }
9
+
10
+ gzfilebuf::~gzfilebuf() {
11
+
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+ sync();
13
+ if ( own_file_descriptor )
14
+ close();
15
+
16
+ }
17
+
18
+ gzfilebuf *gzfilebuf::open( const char *name,
19
+ int io_mode ) {
20
+
21
+ if ( is_open() )
22
+ return NULL;
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+
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+ char char_mode[10];
25
+ char *p = char_mode;
26
+
27
+ if ( io_mode & ios::in ) {
28
+ mode = ios::in;
29
+ *p++ = 'r';
30
+ } else if ( io_mode & ios::app ) {
31
+ mode = ios::app;
32
+ *p++ = 'a';
33
+ } else {
34
+ mode = ios::out;
35
+ *p++ = 'w';
36
+ }
37
+
38
+ if ( io_mode & ios::binary ) {
39
+ mode |= ios::binary;
40
+ *p++ = 'b';
41
+ }
42
+
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+ // Hard code the compression level
44
+ if ( io_mode & (ios::out|ios::app )) {
45
+ *p++ = '9';
46
+ }
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+
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+ // Put the end-of-string indicator
49
+ *p = '\0';
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+
51
+ if ( (file = gzopen(name, char_mode)) == NULL )
52
+ return NULL;
53
+
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+ own_file_descriptor = 1;
55
+
56
+ return this;
57
+
58
+ }
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+
60
+ gzfilebuf *gzfilebuf::attach( int file_descriptor,
61
+ int io_mode ) {
62
+
63
+ if ( is_open() )
64
+ return NULL;
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+
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+ char char_mode[10];
67
+ char *p = char_mode;
68
+
69
+ if ( io_mode & ios::in ) {
70
+ mode = ios::in;
71
+ *p++ = 'r';
72
+ } else if ( io_mode & ios::app ) {
73
+ mode = ios::app;
74
+ *p++ = 'a';
75
+ } else {
76
+ mode = ios::out;
77
+ *p++ = 'w';
78
+ }
79
+
80
+ if ( io_mode & ios::binary ) {
81
+ mode |= ios::binary;
82
+ *p++ = 'b';
83
+ }
84
+
85
+ // Hard code the compression level
86
+ if ( io_mode & (ios::out|ios::app )) {
87
+ *p++ = '9';
88
+ }
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+
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+ // Put the end-of-string indicator
91
+ *p = '\0';
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+
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+ if ( (file = gzdopen(file_descriptor, char_mode)) == NULL )
94
+ return NULL;
95
+
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+ own_file_descriptor = 0;
97
+
98
+ return this;
99
+
100
+ }
101
+
102
+ gzfilebuf *gzfilebuf::close() {
103
+
104
+ if ( is_open() ) {
105
+
106
+ sync();
107
+ gzclose( file );
108
+ file = NULL;
109
+
110
+ }
111
+
112
+ return this;
113
+
114
+ }
115
+
116
+ int gzfilebuf::setcompressionlevel( int comp_level ) {
117
+
118
+ return gzsetparams(file, comp_level, -2);
119
+
120
+ }
121
+
122
+ int gzfilebuf::setcompressionstrategy( int comp_strategy ) {
123
+
124
+ return gzsetparams(file, -2, comp_strategy);
125
+
126
+ }
127
+
128
+
129
+ streampos gzfilebuf::seekoff( streamoff off, ios::seek_dir dir, int which ) {
130
+
131
+ return streampos(EOF);
132
+
133
+ }
134
+
135
+ int gzfilebuf::underflow() {
136
+
137
+ // If the file hasn't been opened for reading, error.
138
+ if ( !is_open() || !(mode & ios::in) )
139
+ return EOF;
140
+
141
+ // if a buffer doesn't exists, allocate one.
142
+ if ( !base() ) {
143
+
144
+ if ( (allocate()) == EOF )
145
+ return EOF;
146
+ setp(0,0);
147
+
148
+ } else {
149
+
150
+ if ( in_avail() )
151
+ return (unsigned char) *gptr();
152
+
153
+ if ( out_waiting() ) {
154
+ if ( flushbuf() == EOF )
155
+ return EOF;
156
+ }
157
+
158
+ }
159
+
160
+ // Attempt to fill the buffer.
161
+
162
+ int result = fillbuf();
163
+ if ( result == EOF ) {
164
+ // disable get area
165
+ setg(0,0,0);
166
+ return EOF;
167
+ }
168
+
169
+ return (unsigned char) *gptr();
170
+
171
+ }
172
+
173
+ int gzfilebuf::overflow( int c ) {
174
+
175
+ if ( !is_open() || !(mode & ios::out) )
176
+ return EOF;
177
+
178
+ if ( !base() ) {
179
+ if ( allocate() == EOF )
180
+ return EOF;
181
+ setg(0,0,0);
182
+ } else {
183
+ if (in_avail()) {
184
+ return EOF;
185
+ }
186
+ if (out_waiting()) {
187
+ if (flushbuf() == EOF)
188
+ return EOF;
189
+ }
190
+ }
191
+
192
+ int bl = blen();
193
+ setp( base(), base() + bl);
194
+
195
+ if ( c != EOF ) {
196
+
197
+ *pptr() = c;
198
+ pbump(1);
199
+
200
+ }
201
+
202
+ return 0;
203
+
204
+ }
205
+
206
+ int gzfilebuf::sync() {
207
+
208
+ if ( !is_open() )
209
+ return EOF;
210
+
211
+ if ( out_waiting() )
212
+ return flushbuf();
213
+
214
+ return 0;
215
+
216
+ }
217
+
218
+ int gzfilebuf::flushbuf() {
219
+
220
+ int n;
221
+ char *q;
222
+
223
+ q = pbase();
224
+ n = pptr() - q;
225
+
226
+ if ( gzwrite( file, q, n) < n )
227
+ return EOF;
228
+
229
+ setp(0,0);
230
+
231
+ return 0;
232
+
233
+ }
234
+
235
+ int gzfilebuf::fillbuf() {
236
+
237
+ int required;
238
+ char *p;
239
+
240
+ p = base();
241
+
242
+ required = blen();
243
+
244
+ int t = gzread( file, p, required );
245
+
246
+ if ( t <= 0) return EOF;
247
+
248
+ setg( base(), base(), base()+t);
249
+
250
+ return t;
251
+
252
+ }
253
+
254
+ gzfilestream_common::gzfilestream_common() :
255
+ ios( gzfilestream_common::rdbuf() )
256
+ { }
257
+
258
+ gzfilestream_common::~gzfilestream_common()
259
+ { }
260
+
261
+ void gzfilestream_common::attach( int fd, int io_mode ) {
262
+
263
+ if ( !buffer.attach( fd, io_mode) )
264
+ clear( ios::failbit | ios::badbit );
265
+ else
266
+ clear();
267
+
268
+ }
269
+
270
+ void gzfilestream_common::open( const char *name, int io_mode ) {
271
+
272
+ if ( !buffer.open( name, io_mode ) )
273
+ clear( ios::failbit | ios::badbit );
274
+ else
275
+ clear();
276
+
277
+ }
278
+
279
+ void gzfilestream_common::close() {
280
+
281
+ if ( !buffer.close() )
282
+ clear( ios::failbit | ios::badbit );
283
+
284
+ }
285
+
286
+ gzfilebuf *gzfilestream_common::rdbuf()
287
+ {
288
+ return &buffer;
289
+ }
290
+
291
+ gzifstream::gzifstream() :
292
+ ios( gzfilestream_common::rdbuf() )
293
+ {
294
+ clear( ios::badbit );
295
+ }
296
+
297
+ gzifstream::gzifstream( const char *name, int io_mode ) :
298
+ ios( gzfilestream_common::rdbuf() )
299
+ {
300
+ gzfilestream_common::open( name, io_mode );
301
+ }
302
+
303
+ gzifstream::gzifstream( int fd, int io_mode ) :
304
+ ios( gzfilestream_common::rdbuf() )
305
+ {
306
+ gzfilestream_common::attach( fd, io_mode );
307
+ }
308
+
309
+ gzifstream::~gzifstream() { }
310
+
311
+ gzofstream::gzofstream() :
312
+ ios( gzfilestream_common::rdbuf() )
313
+ {
314
+ clear( ios::badbit );
315
+ }
316
+
317
+ gzofstream::gzofstream( const char *name, int io_mode ) :
318
+ ios( gzfilestream_common::rdbuf() )
319
+ {
320
+ gzfilestream_common::open( name, io_mode );
321
+ }
322
+
323
+ gzofstream::gzofstream( int fd, int io_mode ) :
324
+ ios( gzfilestream_common::rdbuf() )
325
+ {
326
+ gzfilestream_common::attach( fd, io_mode );
327
+ }
328
+
329
+ gzofstream::~gzofstream() { }
@@ -0,0 +1,128 @@
1
+
2
+ #ifndef zfstream_h
3
+ #define zfstream_h
4
+
5
+ #include <fstream.h>
6
+ #include "zlib.h"
7
+
8
+ class gzfilebuf : public streambuf {
9
+
10
+ public:
11
+
12
+ gzfilebuf( );
13
+ virtual ~gzfilebuf();
14
+
15
+ gzfilebuf *open( const char *name, int io_mode );
16
+ gzfilebuf *attach( int file_descriptor, int io_mode );
17
+ gzfilebuf *close();
18
+
19
+ int setcompressionlevel( int comp_level );
20
+ int setcompressionstrategy( int comp_strategy );
21
+
22
+ inline int is_open() const { return (file !=NULL); }
23
+
24
+ virtual streampos seekoff( streamoff, ios::seek_dir, int );
25
+
26
+ virtual int sync();
27
+
28
+ protected:
29
+
30
+ virtual int underflow();
31
+ virtual int overflow( int = EOF );
32
+
33
+ private:
34
+
35
+ gzFile file;
36
+ short mode;
37
+ short own_file_descriptor;
38
+
39
+ int flushbuf();
40
+ int fillbuf();
41
+
42
+ };
43
+
44
+ class gzfilestream_common : virtual public ios {
45
+
46
+ friend class gzifstream;
47
+ friend class gzofstream;
48
+ friend gzofstream &setcompressionlevel( gzofstream &, int );
49
+ friend gzofstream &setcompressionstrategy( gzofstream &, int );
50
+
51
+ public:
52
+ virtual ~gzfilestream_common();
53
+
54
+ void attach( int fd, int io_mode );
55
+ void open( const char *name, int io_mode );
56
+ void close();
57
+
58
+ protected:
59
+ gzfilestream_common();
60
+
61
+ private:
62
+ gzfilebuf *rdbuf();
63
+
64
+ gzfilebuf buffer;
65
+
66
+ };
67
+
68
+ class gzifstream : public gzfilestream_common, public istream {
69
+
70
+ public:
71
+
72
+ gzifstream();
73
+ gzifstream( const char *name, int io_mode = ios::in );
74
+ gzifstream( int fd, int io_mode = ios::in );
75
+
76
+ virtual ~gzifstream();
77
+
78
+ };
79
+
80
+ class gzofstream : public gzfilestream_common, public ostream {
81
+
82
+ public:
83
+
84
+ gzofstream();
85
+ gzofstream( const char *name, int io_mode = ios::out );
86
+ gzofstream( int fd, int io_mode = ios::out );
87
+
88
+ virtual ~gzofstream();
89
+
90
+ };
91
+
92
+ template<class T> class gzomanip {
93
+ friend gzofstream &operator<<(gzofstream &, const gzomanip<T> &);
94
+ public:
95
+ gzomanip(gzofstream &(*f)(gzofstream &, T), T v) : func(f), val(v) { }
96
+ private:
97
+ gzofstream &(*func)(gzofstream &, T);
98
+ T val;
99
+ };
100
+
101
+ template<class T> gzofstream &operator<<(gzofstream &s, const gzomanip<T> &m)
102
+ {
103
+ return (*m.func)(s, m.val);
104
+ }
105
+
106
+ inline gzofstream &setcompressionlevel( gzofstream &s, int l )
107
+ {
108
+ (s.rdbuf())->setcompressionlevel(l);
109
+ return s;
110
+ }
111
+
112
+ inline gzofstream &setcompressionstrategy( gzofstream &s, int l )
113
+ {
114
+ (s.rdbuf())->setcompressionstrategy(l);
115
+ return s;
116
+ }
117
+
118
+ inline gzomanip<int> setcompressionlevel(int l)
119
+ {
120
+ return gzomanip<int>(&setcompressionlevel,l);
121
+ }
122
+
123
+ inline gzomanip<int> setcompressionstrategy(int l)
124
+ {
125
+ return gzomanip<int>(&setcompressionstrategy,l);
126
+ }
127
+
128
+ #endif