bio-velvet_underground 0.0.1
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- checksums.yaml +7 -0
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- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.bor +107 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.emx +69 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.gcc +141 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.msc +126 -0
- data/ext/src/third-party/zlib-1.2.3/win32/VisualC.txt +3 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib.def +60 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib1.rc +39 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.in.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.3 +159 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.h +1357 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.c +318 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.h +269 -0
- data/lib/bio-velvet_underground.rb +12 -0
- data/lib/bio-velvet_underground/external/VERSION +1 -0
- data/lib/bio-velvet_underground/velvet_underground.rb +72 -0
- data/spec/binary_sequence_store_spec.rb +27 -0
- data/spec/data/1/CnyUnifiedSeq +0 -0
- data/spec/spec_helper.rb +31 -0
- metadata +456 -0
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//
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// � Copyright Henrik Ravn 2004
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//
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// Use, modification and distribution are subject to the Boost Software License, Version 1.0.
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// (See accompanying file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
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//
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using System;
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using System.Collections;
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using System.IO;
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// uncomment the define below to include unit tests
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//#define nunit
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#if nunit
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using NUnit.Framework;
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// Unit tests for the DotZLib class library
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// ----------------------------------------
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//
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// Use this with NUnit 2 from http://www.nunit.org
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//
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namespace DotZLibTests
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{
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using DotZLib;
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// helper methods
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internal class Utils
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{
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public static bool byteArrEqual( byte[] lhs, byte[] rhs )
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{
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if (lhs.Length != rhs.Length)
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return false;
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for (int i = lhs.Length-1; i >= 0; --i)
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if (lhs[i] != rhs[i])
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return false;
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return true;
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}
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}
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[TestFixture]
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public class CircBufferTests
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{
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#region Circular buffer tests
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[Test]
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public void SinglePutGet()
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{
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CircularBuffer buf = new CircularBuffer(10);
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Assert.AreEqual( 0, buf.Size );
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Assert.AreEqual( -1, buf.Get() );
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Assert.IsTrue(buf.Put( 1 ));
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Assert.AreEqual( 1, buf.Size );
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Assert.AreEqual( 1, buf.Get() );
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Assert.AreEqual( 0, buf.Size );
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Assert.AreEqual( -1, buf.Get() );
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}
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[Test]
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public void BlockPutGet()
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{
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CircularBuffer buf = new CircularBuffer(10);
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byte[] arr = {1,2,3,4,5,6,7,8,9,10};
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Assert.AreEqual( 10, buf.Put(arr,0,10) );
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Assert.AreEqual( 10, buf.Size );
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Assert.IsFalse( buf.Put(11) );
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Assert.AreEqual( 1, buf.Get() );
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Assert.IsTrue( buf.Put(11) );
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byte[] arr2 = (byte[])arr.Clone();
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Assert.AreEqual( 9, buf.Get(arr2,1,9) );
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Assert.IsTrue( Utils.byteArrEqual(arr,arr2) );
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}
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#endregion
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}
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[TestFixture]
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public class ChecksumTests
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{
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#region CRC32 Tests
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[Test]
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public void CRC32_Null()
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{
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CRC32Checksum crc32 = new CRC32Checksum();
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Assert.AreEqual( 0, crc32.Value );
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crc32 = new CRC32Checksum(1);
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Assert.AreEqual( 1, crc32.Value );
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crc32 = new CRC32Checksum(556);
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Assert.AreEqual( 556, crc32.Value );
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}
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[Test]
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public void CRC32_Data()
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{
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CRC32Checksum crc32 = new CRC32Checksum();
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byte[] data = { 1,2,3,4,5,6,7 };
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crc32.Update(data);
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Assert.AreEqual( 0x70e46888, crc32.Value );
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crc32 = new CRC32Checksum();
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crc32.Update("penguin");
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Assert.AreEqual( 0x0e5c1a120, crc32.Value );
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crc32 = new CRC32Checksum(1);
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crc32.Update("penguin");
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Assert.AreEqual(0x43b6aa94, crc32.Value);
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}
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#endregion
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#region Adler tests
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[Test]
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public void Adler_Null()
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{
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AdlerChecksum adler = new AdlerChecksum();
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Assert.AreEqual(0, adler.Value);
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adler = new AdlerChecksum(1);
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Assert.AreEqual( 1, adler.Value );
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adler = new AdlerChecksum(556);
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Assert.AreEqual( 556, adler.Value );
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}
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[Test]
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public void Adler_Data()
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{
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AdlerChecksum adler = new AdlerChecksum(1);
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byte[] data = { 1,2,3,4,5,6,7 };
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adler.Update(data);
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Assert.AreEqual( 0x5b001d, adler.Value );
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adler = new AdlerChecksum();
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adler.Update("penguin");
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Assert.AreEqual(0x0bcf02f6, adler.Value );
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adler = new AdlerChecksum(1);
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adler.Update("penguin");
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Assert.AreEqual(0x0bd602f7, adler.Value);
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}
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#endregion
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}
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[TestFixture]
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public class InfoTests
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{
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#region Info tests
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[Test]
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public void Info_Version()
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{
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Info info = new Info();
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Assert.AreEqual("1.2.3", Info.Version);
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Assert.AreEqual(32, info.SizeOfUInt);
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Assert.AreEqual(32, info.SizeOfULong);
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Assert.AreEqual(32, info.SizeOfPointer);
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Assert.AreEqual(32, info.SizeOfOffset);
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}
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#endregion
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}
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[TestFixture]
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public class DeflateInflateTests
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{
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#region Deflate tests
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[Test]
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public void Deflate_Init()
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{
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using (Deflater def = new Deflater(CompressLevel.Default))
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{
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}
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}
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private ArrayList compressedData = new ArrayList();
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private uint adler1;
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private ArrayList uncompressedData = new ArrayList();
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private uint adler2;
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public void CDataAvail(byte[] data, int startIndex, int count)
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{
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for (int i = 0; i < count; ++i)
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compressedData.Add(data[i+startIndex]);
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}
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[Test]
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public void Deflate_Compress()
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{
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compressedData.Clear();
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byte[] testData = new byte[35000];
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for (int i = 0; i < testData.Length; ++i)
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testData[i] = 5;
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using (Deflater def = new Deflater((CompressLevel)5))
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{
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def.DataAvailable += new DataAvailableHandler(CDataAvail);
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def.Add(testData);
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def.Finish();
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adler1 = def.Checksum;
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}
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}
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#endregion
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#region Inflate tests
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[Test]
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public void Inflate_Init()
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{
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using (Inflater inf = new Inflater())
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{
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}
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}
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private void DDataAvail(byte[] data, int startIndex, int count)
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{
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for (int i = 0; i < count; ++i)
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uncompressedData.Add(data[i+startIndex]);
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}
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[Test]
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public void Inflate_Expand()
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{
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uncompressedData.Clear();
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using (Inflater inf = new Inflater())
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{
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inf.DataAvailable += new DataAvailableHandler(DDataAvail);
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inf.Add((byte[])compressedData.ToArray(typeof(byte)));
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inf.Finish();
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adler2 = inf.Checksum;
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}
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Assert.AreEqual( adler1, adler2 );
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}
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#endregion
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}
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[TestFixture]
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public class GZipStreamTests
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{
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#region GZipStream test
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[Test]
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public void GZipStream_WriteRead()
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{
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using (GZipStream gzOut = new GZipStream("gzstream.gz", CompressLevel.Best))
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{
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BinaryWriter writer = new BinaryWriter(gzOut);
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writer.Write("hi there");
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writer.Write(Math.PI);
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writer.Write(42);
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}
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using (GZipStream gzIn = new GZipStream("gzstream.gz"))
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{
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BinaryReader reader = new BinaryReader(gzIn);
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string s = reader.ReadString();
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Assert.AreEqual("hi there",s);
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double d = reader.ReadDouble();
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Assert.AreEqual(Math.PI, d);
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int i = reader.ReadInt32();
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Assert.AreEqual(42,i);
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}
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}
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#endregion
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}
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}
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#endif
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Boost Software License - Version 1.0 - August 17th, 2003
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Permission is hereby granted, free of charge, to any person or organization
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obtaining a copy of the software and accompanying documentation covered by
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this license (the "Software") to use, reproduce, display, distribute,
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execute, and transmit the Software, and to prepare derivative works of the
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Software, and to permit third-parties to whom the Software is furnished to
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do so, all subject to the following:
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The copyright notices in the Software and this entire statement, including
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the above license grant, this restriction and the following disclaimer,
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must be included in all copies of the Software, in whole or in part, and
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all derivative works of the Software, unless such copies or derivative
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works are solely in the form of machine-executable object code generated by
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a source language processor.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
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SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
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FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
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ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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DEALINGS IN THE SOFTWARE.
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This directory contains a .Net wrapper class library for the ZLib1.dll
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The wrapper includes support for inflating/deflating memory buffers,
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.Net streaming wrappers for the gz streams part of zlib, and wrappers
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for the checksum parts of zlib. See DotZLib/UnitTests.cs for examples.
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Directory structure:
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--------------------
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LICENSE_1_0.txt - License file.
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readme.txt - This file.
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DotZLib.chm - Class library documentation
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DotZLib.build - NAnt build file
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DotZLib.sln - Microsoft Visual Studio 2003 solution file
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DotZLib\*.cs - Source files for the class library
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Unit tests:
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-----------
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The file DotZLib/UnitTests.cs contains unit tests for use with NUnit 2.1 or higher.
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To include unit tests in the build, define nunit before building.
|
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Build instructions:
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-------------------
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26
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1. Using Visual Studio.Net 2003:
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Open DotZLib.sln in VS.Net and build from there. Output file (DotZLib.dll)
|
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will be found ./DotZLib/bin/release or ./DotZLib/bin/debug, depending on
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you are building the release or debug version of the library. Check
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DotZLib/UnitTests.cs for instructions on how to include unit tests in the
|
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build.
|
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|
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2. Using NAnt:
|
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Open a command prompt with access to the build environment and run nant
|
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in the same directory as the DotZLib.build file.
|
37
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You can define 2 properties on the nant command-line to control the build:
|
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debug={true|false} to toggle between release/debug builds (default=true).
|
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nunit={true|false} to include or esclude unit tests (default=true).
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Also the target clean will remove binaries.
|
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Output file (DotZLib.dll) will be found in either ./DotZLib/bin/release
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or ./DotZLib/bin/debug, depending on whether you are building the release
|
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or debug version of the library.
|
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|
45
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Examples:
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nant -D:debug=false -D:nunit=false
|
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will build a release mode version of the library without unit tests.
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nant
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will build a debug version of the library with unit tests
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nant clean
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will remove all previously built files.
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|
53
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|
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---------------------------------
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55
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Copyright (c) Henrik Ravn 2004
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|
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Use, modification and distribution are subject to the Boost Software License, Version 1.0.
|
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(See accompanying file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
|
@@ -0,0 +1 @@
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1
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See infback9.h for what this is and how to use it.
|
@@ -0,0 +1,608 @@
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1
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/* infback9.c -- inflate deflate64 data using a call-back interface
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* Copyright (C) 1995-2003 Mark Adler
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* For conditions of distribution and use, see copyright notice in zlib.h
|
4
|
+
*/
|
5
|
+
|
6
|
+
#include "zutil.h"
|
7
|
+
#include "infback9.h"
|
8
|
+
#include "inftree9.h"
|
9
|
+
#include "inflate9.h"
|
10
|
+
|
11
|
+
#define WSIZE 65536UL
|
12
|
+
|
13
|
+
/*
|
14
|
+
strm provides memory allocation functions in zalloc and zfree, or
|
15
|
+
Z_NULL to use the library memory allocation functions.
|
16
|
+
|
17
|
+
window is a user-supplied window and output buffer that is 64K bytes.
|
18
|
+
*/
|
19
|
+
int ZEXPORT inflateBack9Init_(strm, window, version, stream_size)
|
20
|
+
z_stream FAR *strm;
|
21
|
+
unsigned char FAR *window;
|
22
|
+
const char *version;
|
23
|
+
int stream_size;
|
24
|
+
{
|
25
|
+
struct inflate_state FAR *state;
|
26
|
+
|
27
|
+
if (version == Z_NULL || version[0] != ZLIB_VERSION[0] ||
|
28
|
+
stream_size != (int)(sizeof(z_stream)))
|
29
|
+
return Z_VERSION_ERROR;
|
30
|
+
if (strm == Z_NULL || window == Z_NULL)
|
31
|
+
return Z_STREAM_ERROR;
|
32
|
+
strm->msg = Z_NULL; /* in case we return an error */
|
33
|
+
if (strm->zalloc == (alloc_func)0) {
|
34
|
+
strm->zalloc = zcalloc;
|
35
|
+
strm->opaque = (voidpf)0;
|
36
|
+
}
|
37
|
+
if (strm->zfree == (free_func)0) strm->zfree = zcfree;
|
38
|
+
state = (struct inflate_state FAR *)ZALLOC(strm, 1,
|
39
|
+
sizeof(struct inflate_state));
|
40
|
+
if (state == Z_NULL) return Z_MEM_ERROR;
|
41
|
+
Tracev((stderr, "inflate: allocated\n"));
|
42
|
+
strm->state = (voidpf)state;
|
43
|
+
state->window = window;
|
44
|
+
return Z_OK;
|
45
|
+
}
|
46
|
+
|
47
|
+
/*
|
48
|
+
Build and output length and distance decoding tables for fixed code
|
49
|
+
decoding.
|
50
|
+
*/
|
51
|
+
#ifdef MAKEFIXED
|
52
|
+
#include <stdio.h>
|
53
|
+
|
54
|
+
void makefixed9(void)
|
55
|
+
{
|
56
|
+
unsigned sym, bits, low, size;
|
57
|
+
code *next, *lenfix, *distfix;
|
58
|
+
struct inflate_state state;
|
59
|
+
code fixed[544];
|
60
|
+
|
61
|
+
/* literal/length table */
|
62
|
+
sym = 0;
|
63
|
+
while (sym < 144) state.lens[sym++] = 8;
|
64
|
+
while (sym < 256) state.lens[sym++] = 9;
|
65
|
+
while (sym < 280) state.lens[sym++] = 7;
|
66
|
+
while (sym < 288) state.lens[sym++] = 8;
|
67
|
+
next = fixed;
|
68
|
+
lenfix = next;
|
69
|
+
bits = 9;
|
70
|
+
inflate_table9(LENS, state.lens, 288, &(next), &(bits), state.work);
|
71
|
+
|
72
|
+
/* distance table */
|
73
|
+
sym = 0;
|
74
|
+
while (sym < 32) state.lens[sym++] = 5;
|
75
|
+
distfix = next;
|
76
|
+
bits = 5;
|
77
|
+
inflate_table9(DISTS, state.lens, 32, &(next), &(bits), state.work);
|
78
|
+
|
79
|
+
/* write tables */
|
80
|
+
puts(" /* inffix9.h -- table for decoding deflate64 fixed codes");
|
81
|
+
puts(" * Generated automatically by makefixed9().");
|
82
|
+
puts(" */");
|
83
|
+
puts("");
|
84
|
+
puts(" /* WARNING: this file should *not* be used by applications.");
|
85
|
+
puts(" It is part of the implementation of this library and is");
|
86
|
+
puts(" subject to change. Applications should only use zlib.h.");
|
87
|
+
puts(" */");
|
88
|
+
puts("");
|
89
|
+
size = 1U << 9;
|
90
|
+
printf(" static const code lenfix[%u] = {", size);
|
91
|
+
low = 0;
|
92
|
+
for (;;) {
|
93
|
+
if ((low % 6) == 0) printf("\n ");
|
94
|
+
printf("{%u,%u,%d}", lenfix[low].op, lenfix[low].bits,
|
95
|
+
lenfix[low].val);
|
96
|
+
if (++low == size) break;
|
97
|
+
putchar(',');
|
98
|
+
}
|
99
|
+
puts("\n };");
|
100
|
+
size = 1U << 5;
|
101
|
+
printf("\n static const code distfix[%u] = {", size);
|
102
|
+
low = 0;
|
103
|
+
for (;;) {
|
104
|
+
if ((low % 5) == 0) printf("\n ");
|
105
|
+
printf("{%u,%u,%d}", distfix[low].op, distfix[low].bits,
|
106
|
+
distfix[low].val);
|
107
|
+
if (++low == size) break;
|
108
|
+
putchar(',');
|
109
|
+
}
|
110
|
+
puts("\n };");
|
111
|
+
}
|
112
|
+
#endif /* MAKEFIXED */
|
113
|
+
|
114
|
+
/* Macros for inflateBack(): */
|
115
|
+
|
116
|
+
/* Clear the input bit accumulator */
|
117
|
+
#define INITBITS() \
|
118
|
+
do { \
|
119
|
+
hold = 0; \
|
120
|
+
bits = 0; \
|
121
|
+
} while (0)
|
122
|
+
|
123
|
+
/* Assure that some input is available. If input is requested, but denied,
|
124
|
+
then return a Z_BUF_ERROR from inflateBack(). */
|
125
|
+
#define PULL() \
|
126
|
+
do { \
|
127
|
+
if (have == 0) { \
|
128
|
+
have = in(in_desc, &next); \
|
129
|
+
if (have == 0) { \
|
130
|
+
next = Z_NULL; \
|
131
|
+
ret = Z_BUF_ERROR; \
|
132
|
+
goto inf_leave; \
|
133
|
+
} \
|
134
|
+
} \
|
135
|
+
} while (0)
|
136
|
+
|
137
|
+
/* Get a byte of input into the bit accumulator, or return from inflateBack()
|
138
|
+
with an error if there is no input available. */
|
139
|
+
#define PULLBYTE() \
|
140
|
+
do { \
|
141
|
+
PULL(); \
|
142
|
+
have--; \
|
143
|
+
hold += (unsigned long)(*next++) << bits; \
|
144
|
+
bits += 8; \
|
145
|
+
} while (0)
|
146
|
+
|
147
|
+
/* Assure that there are at least n bits in the bit accumulator. If there is
|
148
|
+
not enough available input to do that, then return from inflateBack() with
|
149
|
+
an error. */
|
150
|
+
#define NEEDBITS(n) \
|
151
|
+
do { \
|
152
|
+
while (bits < (unsigned)(n)) \
|
153
|
+
PULLBYTE(); \
|
154
|
+
} while (0)
|
155
|
+
|
156
|
+
/* Return the low n bits of the bit accumulator (n <= 16) */
|
157
|
+
#define BITS(n) \
|
158
|
+
((unsigned)hold & ((1U << (n)) - 1))
|
159
|
+
|
160
|
+
/* Remove n bits from the bit accumulator */
|
161
|
+
#define DROPBITS(n) \
|
162
|
+
do { \
|
163
|
+
hold >>= (n); \
|
164
|
+
bits -= (unsigned)(n); \
|
165
|
+
} while (0)
|
166
|
+
|
167
|
+
/* Remove zero to seven bits as needed to go to a byte boundary */
|
168
|
+
#define BYTEBITS() \
|
169
|
+
do { \
|
170
|
+
hold >>= bits & 7; \
|
171
|
+
bits -= bits & 7; \
|
172
|
+
} while (0)
|
173
|
+
|
174
|
+
/* Assure that some output space is available, by writing out the window
|
175
|
+
if it's full. If the write fails, return from inflateBack() with a
|
176
|
+
Z_BUF_ERROR. */
|
177
|
+
#define ROOM() \
|
178
|
+
do { \
|
179
|
+
if (left == 0) { \
|
180
|
+
put = window; \
|
181
|
+
left = WSIZE; \
|
182
|
+
wrap = 1; \
|
183
|
+
if (out(out_desc, put, (unsigned)left)) { \
|
184
|
+
ret = Z_BUF_ERROR; \
|
185
|
+
goto inf_leave; \
|
186
|
+
} \
|
187
|
+
} \
|
188
|
+
} while (0)
|
189
|
+
|
190
|
+
/*
|
191
|
+
strm provides the memory allocation functions and window buffer on input,
|
192
|
+
and provides information on the unused input on return. For Z_DATA_ERROR
|
193
|
+
returns, strm will also provide an error message.
|
194
|
+
|
195
|
+
in() and out() are the call-back input and output functions. When
|
196
|
+
inflateBack() needs more input, it calls in(). When inflateBack() has
|
197
|
+
filled the window with output, or when it completes with data in the
|
198
|
+
window, it calls out() to write out the data. The application must not
|
199
|
+
change the provided input until in() is called again or inflateBack()
|
200
|
+
returns. The application must not change the window/output buffer until
|
201
|
+
inflateBack() returns.
|
202
|
+
|
203
|
+
in() and out() are called with a descriptor parameter provided in the
|
204
|
+
inflateBack() call. This parameter can be a structure that provides the
|
205
|
+
information required to do the read or write, as well as accumulated
|
206
|
+
information on the input and output such as totals and check values.
|
207
|
+
|
208
|
+
in() should return zero on failure. out() should return non-zero on
|
209
|
+
failure. If either in() or out() fails, than inflateBack() returns a
|
210
|
+
Z_BUF_ERROR. strm->next_in can be checked for Z_NULL to see whether it
|
211
|
+
was in() or out() that caused in the error. Otherwise, inflateBack()
|
212
|
+
returns Z_STREAM_END on success, Z_DATA_ERROR for an deflate format
|
213
|
+
error, or Z_MEM_ERROR if it could not allocate memory for the state.
|
214
|
+
inflateBack() can also return Z_STREAM_ERROR if the input parameters
|
215
|
+
are not correct, i.e. strm is Z_NULL or the state was not initialized.
|
216
|
+
*/
|
217
|
+
int ZEXPORT inflateBack9(strm, in, in_desc, out, out_desc)
|
218
|
+
z_stream FAR *strm;
|
219
|
+
in_func in;
|
220
|
+
void FAR *in_desc;
|
221
|
+
out_func out;
|
222
|
+
void FAR *out_desc;
|
223
|
+
{
|
224
|
+
struct inflate_state FAR *state;
|
225
|
+
unsigned char FAR *next; /* next input */
|
226
|
+
unsigned char FAR *put; /* next output */
|
227
|
+
unsigned have; /* available input */
|
228
|
+
unsigned long left; /* available output */
|
229
|
+
inflate_mode mode; /* current inflate mode */
|
230
|
+
int lastblock; /* true if processing last block */
|
231
|
+
int wrap; /* true if the window has wrapped */
|
232
|
+
unsigned long write; /* window write index */
|
233
|
+
unsigned char FAR *window; /* allocated sliding window, if needed */
|
234
|
+
unsigned long hold; /* bit buffer */
|
235
|
+
unsigned bits; /* bits in bit buffer */
|
236
|
+
unsigned extra; /* extra bits needed */
|
237
|
+
unsigned long length; /* literal or length of data to copy */
|
238
|
+
unsigned long offset; /* distance back to copy string from */
|
239
|
+
unsigned long copy; /* number of stored or match bytes to copy */
|
240
|
+
unsigned char FAR *from; /* where to copy match bytes from */
|
241
|
+
code const FAR *lencode; /* starting table for length/literal codes */
|
242
|
+
code const FAR *distcode; /* starting table for distance codes */
|
243
|
+
unsigned lenbits; /* index bits for lencode */
|
244
|
+
unsigned distbits; /* index bits for distcode */
|
245
|
+
code this; /* current decoding table entry */
|
246
|
+
code last; /* parent table entry */
|
247
|
+
unsigned len; /* length to copy for repeats, bits to drop */
|
248
|
+
int ret; /* return code */
|
249
|
+
static const unsigned short order[19] = /* permutation of code lengths */
|
250
|
+
{16, 17, 18, 0, 8, 7, 9, 6, 10, 5, 11, 4, 12, 3, 13, 2, 14, 1, 15};
|
251
|
+
#include "inffix9.h"
|
252
|
+
|
253
|
+
/* Check that the strm exists and that the state was initialized */
|
254
|
+
if (strm == Z_NULL || strm->state == Z_NULL)
|
255
|
+
return Z_STREAM_ERROR;
|
256
|
+
state = (struct inflate_state FAR *)strm->state;
|
257
|
+
|
258
|
+
/* Reset the state */
|
259
|
+
strm->msg = Z_NULL;
|
260
|
+
mode = TYPE;
|
261
|
+
lastblock = 0;
|
262
|
+
write = 0;
|
263
|
+
wrap = 0;
|
264
|
+
window = state->window;
|
265
|
+
next = strm->next_in;
|
266
|
+
have = next != Z_NULL ? strm->avail_in : 0;
|
267
|
+
hold = 0;
|
268
|
+
bits = 0;
|
269
|
+
put = window;
|
270
|
+
left = WSIZE;
|
271
|
+
lencode = Z_NULL;
|
272
|
+
distcode = Z_NULL;
|
273
|
+
|
274
|
+
/* Inflate until end of block marked as last */
|
275
|
+
for (;;)
|
276
|
+
switch (mode) {
|
277
|
+
case TYPE:
|
278
|
+
/* determine and dispatch block type */
|
279
|
+
if (lastblock) {
|
280
|
+
BYTEBITS();
|
281
|
+
mode = DONE;
|
282
|
+
break;
|
283
|
+
}
|
284
|
+
NEEDBITS(3);
|
285
|
+
lastblock = BITS(1);
|
286
|
+
DROPBITS(1);
|
287
|
+
switch (BITS(2)) {
|
288
|
+
case 0: /* stored block */
|
289
|
+
Tracev((stderr, "inflate: stored block%s\n",
|
290
|
+
lastblock ? " (last)" : ""));
|
291
|
+
mode = STORED;
|
292
|
+
break;
|
293
|
+
case 1: /* fixed block */
|
294
|
+
lencode = lenfix;
|
295
|
+
lenbits = 9;
|
296
|
+
distcode = distfix;
|
297
|
+
distbits = 5;
|
298
|
+
Tracev((stderr, "inflate: fixed codes block%s\n",
|
299
|
+
lastblock ? " (last)" : ""));
|
300
|
+
mode = LEN; /* decode codes */
|
301
|
+
break;
|
302
|
+
case 2: /* dynamic block */
|
303
|
+
Tracev((stderr, "inflate: dynamic codes block%s\n",
|
304
|
+
lastblock ? " (last)" : ""));
|
305
|
+
mode = TABLE;
|
306
|
+
break;
|
307
|
+
case 3:
|
308
|
+
strm->msg = (char *)"invalid block type";
|
309
|
+
mode = BAD;
|
310
|
+
}
|
311
|
+
DROPBITS(2);
|
312
|
+
break;
|
313
|
+
|
314
|
+
case STORED:
|
315
|
+
/* get and verify stored block length */
|
316
|
+
BYTEBITS(); /* go to byte boundary */
|
317
|
+
NEEDBITS(32);
|
318
|
+
if ((hold & 0xffff) != ((hold >> 16) ^ 0xffff)) {
|
319
|
+
strm->msg = (char *)"invalid stored block lengths";
|
320
|
+
mode = BAD;
|
321
|
+
break;
|
322
|
+
}
|
323
|
+
length = (unsigned)hold & 0xffff;
|
324
|
+
Tracev((stderr, "inflate: stored length %lu\n",
|
325
|
+
length));
|
326
|
+
INITBITS();
|
327
|
+
|
328
|
+
/* copy stored block from input to output */
|
329
|
+
while (length != 0) {
|
330
|
+
copy = length;
|
331
|
+
PULL();
|
332
|
+
ROOM();
|
333
|
+
if (copy > have) copy = have;
|
334
|
+
if (copy > left) copy = left;
|
335
|
+
zmemcpy(put, next, copy);
|
336
|
+
have -= copy;
|
337
|
+
next += copy;
|
338
|
+
left -= copy;
|
339
|
+
put += copy;
|
340
|
+
length -= copy;
|
341
|
+
}
|
342
|
+
Tracev((stderr, "inflate: stored end\n"));
|
343
|
+
mode = TYPE;
|
344
|
+
break;
|
345
|
+
|
346
|
+
case TABLE:
|
347
|
+
/* get dynamic table entries descriptor */
|
348
|
+
NEEDBITS(14);
|
349
|
+
state->nlen = BITS(5) + 257;
|
350
|
+
DROPBITS(5);
|
351
|
+
state->ndist = BITS(5) + 1;
|
352
|
+
DROPBITS(5);
|
353
|
+
state->ncode = BITS(4) + 4;
|
354
|
+
DROPBITS(4);
|
355
|
+
if (state->nlen > 286) {
|
356
|
+
strm->msg = (char *)"too many length symbols";
|
357
|
+
mode = BAD;
|
358
|
+
break;
|
359
|
+
}
|
360
|
+
Tracev((stderr, "inflate: table sizes ok\n"));
|
361
|
+
|
362
|
+
/* get code length code lengths (not a typo) */
|
363
|
+
state->have = 0;
|
364
|
+
while (state->have < state->ncode) {
|
365
|
+
NEEDBITS(3);
|
366
|
+
state->lens[order[state->have++]] = (unsigned short)BITS(3);
|
367
|
+
DROPBITS(3);
|
368
|
+
}
|
369
|
+
while (state->have < 19)
|
370
|
+
state->lens[order[state->have++]] = 0;
|
371
|
+
state->next = state->codes;
|
372
|
+
lencode = (code const FAR *)(state->next);
|
373
|
+
lenbits = 7;
|
374
|
+
ret = inflate_table9(CODES, state->lens, 19, &(state->next),
|
375
|
+
&(lenbits), state->work);
|
376
|
+
if (ret) {
|
377
|
+
strm->msg = (char *)"invalid code lengths set";
|
378
|
+
mode = BAD;
|
379
|
+
break;
|
380
|
+
}
|
381
|
+
Tracev((stderr, "inflate: code lengths ok\n"));
|
382
|
+
|
383
|
+
/* get length and distance code code lengths */
|
384
|
+
state->have = 0;
|
385
|
+
while (state->have < state->nlen + state->ndist) {
|
386
|
+
for (;;) {
|
387
|
+
this = lencode[BITS(lenbits)];
|
388
|
+
if ((unsigned)(this.bits) <= bits) break;
|
389
|
+
PULLBYTE();
|
390
|
+
}
|
391
|
+
if (this.val < 16) {
|
392
|
+
NEEDBITS(this.bits);
|
393
|
+
DROPBITS(this.bits);
|
394
|
+
state->lens[state->have++] = this.val;
|
395
|
+
}
|
396
|
+
else {
|
397
|
+
if (this.val == 16) {
|
398
|
+
NEEDBITS(this.bits + 2);
|
399
|
+
DROPBITS(this.bits);
|
400
|
+
if (state->have == 0) {
|
401
|
+
strm->msg = (char *)"invalid bit length repeat";
|
402
|
+
mode = BAD;
|
403
|
+
break;
|
404
|
+
}
|
405
|
+
len = (unsigned)(state->lens[state->have - 1]);
|
406
|
+
copy = 3 + BITS(2);
|
407
|
+
DROPBITS(2);
|
408
|
+
}
|
409
|
+
else if (this.val == 17) {
|
410
|
+
NEEDBITS(this.bits + 3);
|
411
|
+
DROPBITS(this.bits);
|
412
|
+
len = 0;
|
413
|
+
copy = 3 + BITS(3);
|
414
|
+
DROPBITS(3);
|
415
|
+
}
|
416
|
+
else {
|
417
|
+
NEEDBITS(this.bits + 7);
|
418
|
+
DROPBITS(this.bits);
|
419
|
+
len = 0;
|
420
|
+
copy = 11 + BITS(7);
|
421
|
+
DROPBITS(7);
|
422
|
+
}
|
423
|
+
if (state->have + copy > state->nlen + state->ndist) {
|
424
|
+
strm->msg = (char *)"invalid bit length repeat";
|
425
|
+
mode = BAD;
|
426
|
+
break;
|
427
|
+
}
|
428
|
+
while (copy--)
|
429
|
+
state->lens[state->have++] = (unsigned short)len;
|
430
|
+
}
|
431
|
+
}
|
432
|
+
|
433
|
+
/* handle error breaks in while */
|
434
|
+
if (mode == BAD) break;
|
435
|
+
|
436
|
+
/* build code tables */
|
437
|
+
state->next = state->codes;
|
438
|
+
lencode = (code const FAR *)(state->next);
|
439
|
+
lenbits = 9;
|
440
|
+
ret = inflate_table9(LENS, state->lens, state->nlen,
|
441
|
+
&(state->next), &(lenbits), state->work);
|
442
|
+
if (ret) {
|
443
|
+
strm->msg = (char *)"invalid literal/lengths set";
|
444
|
+
mode = BAD;
|
445
|
+
break;
|
446
|
+
}
|
447
|
+
distcode = (code const FAR *)(state->next);
|
448
|
+
distbits = 6;
|
449
|
+
ret = inflate_table9(DISTS, state->lens + state->nlen,
|
450
|
+
state->ndist, &(state->next), &(distbits),
|
451
|
+
state->work);
|
452
|
+
if (ret) {
|
453
|
+
strm->msg = (char *)"invalid distances set";
|
454
|
+
mode = BAD;
|
455
|
+
break;
|
456
|
+
}
|
457
|
+
Tracev((stderr, "inflate: codes ok\n"));
|
458
|
+
mode = LEN;
|
459
|
+
|
460
|
+
case LEN:
|
461
|
+
/* get a literal, length, or end-of-block code */
|
462
|
+
for (;;) {
|
463
|
+
this = lencode[BITS(lenbits)];
|
464
|
+
if ((unsigned)(this.bits) <= bits) break;
|
465
|
+
PULLBYTE();
|
466
|
+
}
|
467
|
+
if (this.op && (this.op & 0xf0) == 0) {
|
468
|
+
last = this;
|
469
|
+
for (;;) {
|
470
|
+
this = lencode[last.val +
|
471
|
+
(BITS(last.bits + last.op) >> last.bits)];
|
472
|
+
if ((unsigned)(last.bits + this.bits) <= bits) break;
|
473
|
+
PULLBYTE();
|
474
|
+
}
|
475
|
+
DROPBITS(last.bits);
|
476
|
+
}
|
477
|
+
DROPBITS(this.bits);
|
478
|
+
length = (unsigned)this.val;
|
479
|
+
|
480
|
+
/* process literal */
|
481
|
+
if (this.op == 0) {
|
482
|
+
Tracevv((stderr, this.val >= 0x20 && this.val < 0x7f ?
|
483
|
+
"inflate: literal '%c'\n" :
|
484
|
+
"inflate: literal 0x%02x\n", this.val));
|
485
|
+
ROOM();
|
486
|
+
*put++ = (unsigned char)(length);
|
487
|
+
left--;
|
488
|
+
mode = LEN;
|
489
|
+
break;
|
490
|
+
}
|
491
|
+
|
492
|
+
/* process end of block */
|
493
|
+
if (this.op & 32) {
|
494
|
+
Tracevv((stderr, "inflate: end of block\n"));
|
495
|
+
mode = TYPE;
|
496
|
+
break;
|
497
|
+
}
|
498
|
+
|
499
|
+
/* invalid code */
|
500
|
+
if (this.op & 64) {
|
501
|
+
strm->msg = (char *)"invalid literal/length code";
|
502
|
+
mode = BAD;
|
503
|
+
break;
|
504
|
+
}
|
505
|
+
|
506
|
+
/* length code -- get extra bits, if any */
|
507
|
+
extra = (unsigned)(this.op) & 31;
|
508
|
+
if (extra != 0) {
|
509
|
+
NEEDBITS(extra);
|
510
|
+
length += BITS(extra);
|
511
|
+
DROPBITS(extra);
|
512
|
+
}
|
513
|
+
Tracevv((stderr, "inflate: length %lu\n", length));
|
514
|
+
|
515
|
+
/* get distance code */
|
516
|
+
for (;;) {
|
517
|
+
this = distcode[BITS(distbits)];
|
518
|
+
if ((unsigned)(this.bits) <= bits) break;
|
519
|
+
PULLBYTE();
|
520
|
+
}
|
521
|
+
if ((this.op & 0xf0) == 0) {
|
522
|
+
last = this;
|
523
|
+
for (;;) {
|
524
|
+
this = distcode[last.val +
|
525
|
+
(BITS(last.bits + last.op) >> last.bits)];
|
526
|
+
if ((unsigned)(last.bits + this.bits) <= bits) break;
|
527
|
+
PULLBYTE();
|
528
|
+
}
|
529
|
+
DROPBITS(last.bits);
|
530
|
+
}
|
531
|
+
DROPBITS(this.bits);
|
532
|
+
if (this.op & 64) {
|
533
|
+
strm->msg = (char *)"invalid distance code";
|
534
|
+
mode = BAD;
|
535
|
+
break;
|
536
|
+
}
|
537
|
+
offset = (unsigned)this.val;
|
538
|
+
|
539
|
+
/* get distance extra bits, if any */
|
540
|
+
extra = (unsigned)(this.op) & 15;
|
541
|
+
if (extra != 0) {
|
542
|
+
NEEDBITS(extra);
|
543
|
+
offset += BITS(extra);
|
544
|
+
DROPBITS(extra);
|
545
|
+
}
|
546
|
+
if (offset > WSIZE - (wrap ? 0: left)) {
|
547
|
+
strm->msg = (char *)"invalid distance too far back";
|
548
|
+
mode = BAD;
|
549
|
+
break;
|
550
|
+
}
|
551
|
+
Tracevv((stderr, "inflate: distance %lu\n", offset));
|
552
|
+
|
553
|
+
/* copy match from window to output */
|
554
|
+
do {
|
555
|
+
ROOM();
|
556
|
+
copy = WSIZE - offset;
|
557
|
+
if (copy < left) {
|
558
|
+
from = put + copy;
|
559
|
+
copy = left - copy;
|
560
|
+
}
|
561
|
+
else {
|
562
|
+
from = put - offset;
|
563
|
+
copy = left;
|
564
|
+
}
|
565
|
+
if (copy > length) copy = length;
|
566
|
+
length -= copy;
|
567
|
+
left -= copy;
|
568
|
+
do {
|
569
|
+
*put++ = *from++;
|
570
|
+
} while (--copy);
|
571
|
+
} while (length != 0);
|
572
|
+
break;
|
573
|
+
|
574
|
+
case DONE:
|
575
|
+
/* inflate stream terminated properly -- write leftover output */
|
576
|
+
ret = Z_STREAM_END;
|
577
|
+
if (left < WSIZE) {
|
578
|
+
if (out(out_desc, window, (unsigned)(WSIZE - left)))
|
579
|
+
ret = Z_BUF_ERROR;
|
580
|
+
}
|
581
|
+
goto inf_leave;
|
582
|
+
|
583
|
+
case BAD:
|
584
|
+
ret = Z_DATA_ERROR;
|
585
|
+
goto inf_leave;
|
586
|
+
|
587
|
+
default: /* can't happen, but makes compilers happy */
|
588
|
+
ret = Z_STREAM_ERROR;
|
589
|
+
goto inf_leave;
|
590
|
+
}
|
591
|
+
|
592
|
+
/* Return unused input */
|
593
|
+
inf_leave:
|
594
|
+
strm->next_in = next;
|
595
|
+
strm->avail_in = have;
|
596
|
+
return ret;
|
597
|
+
}
|
598
|
+
|
599
|
+
int ZEXPORT inflateBack9End(strm)
|
600
|
+
z_stream FAR *strm;
|
601
|
+
{
|
602
|
+
if (strm == Z_NULL || strm->state == Z_NULL || strm->zfree == (free_func)0)
|
603
|
+
return Z_STREAM_ERROR;
|
604
|
+
ZFREE(strm, strm->state);
|
605
|
+
strm->state = Z_NULL;
|
606
|
+
Tracev((stderr, "inflate: end\n"));
|
607
|
+
return Z_OK;
|
608
|
+
}
|