bio-velvet_underground 0.0.1
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- checksums.yaml +7 -0
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- data/ext/src/third-party/zlib-1.2.3/uncompr.c +61 -0
- data/ext/src/third-party/zlib-1.2.3/win32/DLL_FAQ.txt +397 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.bor +107 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.emx +69 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.gcc +141 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.msc +126 -0
- data/ext/src/third-party/zlib-1.2.3/win32/VisualC.txt +3 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib.def +60 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib1.rc +39 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.in.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.3 +159 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.h +1357 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.c +318 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.h +269 -0
- data/lib/bio-velvet_underground.rb +12 -0
- data/lib/bio-velvet_underground/external/VERSION +1 -0
- data/lib/bio-velvet_underground/velvet_underground.rb +72 -0
- data/spec/binary_sequence_store_spec.rb +27 -0
- data/spec/data/1/CnyUnifiedSeq +0 -0
- data/spec/spec_helper.rb +31 -0
- metadata +456 -0
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------------------------------------------------------------------------------
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-- ZLib for Ada thick binding. --
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-- --
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-- Copyright (C) 2002-2004 Dmitriy Anisimkov --
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-- --
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-- This library is free software; you can redistribute it and/or modify --
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-- it under the terms of the GNU General Public License as published by --
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-- the Free Software Foundation; either version 2 of the License, or (at --
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-- your option) any later version. --
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-- --
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-- This library is distributed in the hope that it will be useful, but --
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-- WITHOUT ANY WARRANTY; without even the implied warranty of --
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-- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU --
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-- General Public License for more details. --
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-- --
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-- You should have received a copy of the GNU General Public License --
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-- along with this library; if not, write to the Free Software Foundation, --
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-- Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. --
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-- --
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-- As a special exception, if other files instantiate generics from this --
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-- unit, or you link this unit with other files to produce an executable, --
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-- this unit does not by itself cause the resulting executable to be --
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-- covered by the GNU General Public License. This exception does not --
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-- however invalidate any other reasons why the executable file might be --
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-- covered by the GNU Public License. --
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------------------------------------------------------------------------------
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-- $Id: zlib.ads,v 1.26 2004/09/06 06:53:19 vagul Exp $
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with Ada.Streams;
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with Interfaces;
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package ZLib is
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ZLib_Error : exception;
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Status_Error : exception;
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type Compression_Level is new Integer range -1 .. 9;
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type Flush_Mode is private;
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type Compression_Method is private;
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type Window_Bits_Type is new Integer range 8 .. 15;
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type Memory_Level_Type is new Integer range 1 .. 9;
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type Unsigned_32 is new Interfaces.Unsigned_32;
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type Strategy_Type is private;
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type Header_Type is (None, Auto, Default, GZip);
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-- Header type usage have a some limitation for inflate.
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-- See comment for Inflate_Init.
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subtype Count is Ada.Streams.Stream_Element_Count;
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Default_Memory_Level : constant Memory_Level_Type := 8;
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Default_Window_Bits : constant Window_Bits_Type := 15;
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----------------------------------
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-- Compression method constants --
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----------------------------------
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Deflated : constant Compression_Method;
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-- Only one method allowed in this ZLib version
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---------------------------------
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-- Compression level constants --
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---------------------------------
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No_Compression : constant Compression_Level := 0;
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Best_Speed : constant Compression_Level := 1;
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Best_Compression : constant Compression_Level := 9;
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Default_Compression : constant Compression_Level := -1;
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--------------------------
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-- Flush mode constants --
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--------------------------
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No_Flush : constant Flush_Mode;
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-- Regular way for compression, no flush
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Partial_Flush : constant Flush_Mode;
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-- Will be removed, use Z_SYNC_FLUSH instead
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Sync_Flush : constant Flush_Mode;
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-- All pending output is flushed to the output buffer and the output
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-- is aligned on a byte boundary, so that the decompressor can get all
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-- input data available so far. (In particular avail_in is zero after the
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-- call if enough output space has been provided before the call.)
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-- Flushing may degrade compression for some compression algorithms and so
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-- it should be used only when necessary.
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Block_Flush : constant Flush_Mode;
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-- Z_BLOCK requests that inflate() stop
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-- if and when it get to the next deflate block boundary. When decoding the
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-- zlib or gzip format, this will cause inflate() to return immediately
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-- after the header and before the first block. When doing a raw inflate,
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-- inflate() will go ahead and process the first block, and will return
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-- when it gets to the end of that block, or when it runs out of data.
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Full_Flush : constant Flush_Mode;
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-- All output is flushed as with SYNC_FLUSH, and the compression state
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-- is reset so that decompression can restart from this point if previous
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-- compressed data has been damaged or if random access is desired. Using
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-- Full_Flush too often can seriously degrade the compression.
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Finish : constant Flush_Mode;
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-- Just for tell the compressor that input data is complete.
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------------------------------------
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-- Compression strategy constants --
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------------------------------------
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-- RLE stategy could be used only in version 1.2.0 and later.
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Filtered : constant Strategy_Type;
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Huffman_Only : constant Strategy_Type;
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RLE : constant Strategy_Type;
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Default_Strategy : constant Strategy_Type;
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Default_Buffer_Size : constant := 4096;
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type Filter_Type is tagged limited private;
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-- The filter is for compression and for decompression.
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-- The usage of the type is depend of its initialization.
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function Version return String;
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pragma Inline (Version);
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-- Return string representation of the ZLib version.
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procedure Deflate_Init
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(Filter : in out Filter_Type;
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Level : in Compression_Level := Default_Compression;
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Strategy : in Strategy_Type := Default_Strategy;
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Method : in Compression_Method := Deflated;
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Window_Bits : in Window_Bits_Type := Default_Window_Bits;
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Memory_Level : in Memory_Level_Type := Default_Memory_Level;
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Header : in Header_Type := Default);
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-- Compressor initialization.
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-- When Header parameter is Auto or Default, then default zlib header
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-- would be provided for compressed data.
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-- When Header is GZip, then gzip header would be set instead of
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-- default header.
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-- When Header is None, no header would be set for compressed data.
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procedure Inflate_Init
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(Filter : in out Filter_Type;
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Window_Bits : in Window_Bits_Type := Default_Window_Bits;
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Header : in Header_Type := Default);
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-- Decompressor initialization.
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-- Default header type mean that ZLib default header is expecting in the
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-- input compressed stream.
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-- Header type None mean that no header is expecting in the input stream.
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-- GZip header type mean that GZip header is expecting in the
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-- input compressed stream.
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-- Auto header type mean that header type (GZip or Native) would be
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-- detected automatically in the input stream.
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-- Note that header types parameter values None, GZip and Auto are
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-- supported for inflate routine only in ZLib versions 1.2.0.2 and later.
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-- Deflate_Init is supporting all header types.
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function Is_Open (Filter : in Filter_Type) return Boolean;
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pragma Inline (Is_Open);
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-- Is the filter opened for compression or decompression.
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procedure Close
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(Filter : in out Filter_Type;
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Ignore_Error : in Boolean := False);
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-- Closing the compression or decompressor.
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-- If stream is closing before the complete and Ignore_Error is False,
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-- The exception would be raised.
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generic
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with procedure Data_In
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(Item : out Ada.Streams.Stream_Element_Array;
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Last : out Ada.Streams.Stream_Element_Offset);
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with procedure Data_Out
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(Item : in Ada.Streams.Stream_Element_Array);
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procedure Generic_Translate
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(Filter : in out Filter_Type;
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In_Buffer_Size : in Integer := Default_Buffer_Size;
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Out_Buffer_Size : in Integer := Default_Buffer_Size);
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-- Compress/decompress data fetch from Data_In routine and pass the result
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-- to the Data_Out routine. User should provide Data_In and Data_Out
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-- for compression/decompression data flow.
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-- Compression or decompression depend on Filter initialization.
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function Total_In (Filter : in Filter_Type) return Count;
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pragma Inline (Total_In);
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-- Returns total number of input bytes read so far
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function Total_Out (Filter : in Filter_Type) return Count;
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pragma Inline (Total_Out);
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-- Returns total number of bytes output so far
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function CRC32
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(CRC : in Unsigned_32;
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Data : in Ada.Streams.Stream_Element_Array)
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return Unsigned_32;
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pragma Inline (CRC32);
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-- Compute CRC32, it could be necessary for make gzip format
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procedure CRC32
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(CRC : in out Unsigned_32;
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Data : in Ada.Streams.Stream_Element_Array);
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pragma Inline (CRC32);
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-- Compute CRC32, it could be necessary for make gzip format
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-------------------------------------------------
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-- Below is more complex low level routines. --
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-------------------------------------------------
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procedure Translate
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(Filter : in out Filter_Type;
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In_Data : in Ada.Streams.Stream_Element_Array;
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In_Last : out Ada.Streams.Stream_Element_Offset;
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Out_Data : out Ada.Streams.Stream_Element_Array;
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Out_Last : out Ada.Streams.Stream_Element_Offset;
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Flush : in Flush_Mode);
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-- Compress/decompress the In_Data buffer and place the result into
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-- Out_Data. In_Last is the index of last element from In_Data accepted by
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-- the Filter. Out_Last is the last element of the received data from
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-- Filter. To tell the filter that incoming data are complete put the
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-- Flush parameter to Finish.
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function Stream_End (Filter : in Filter_Type) return Boolean;
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pragma Inline (Stream_End);
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-- Return the true when the stream is complete.
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procedure Flush
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(Filter : in out Filter_Type;
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Out_Data : out Ada.Streams.Stream_Element_Array;
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Out_Last : out Ada.Streams.Stream_Element_Offset;
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Flush : in Flush_Mode);
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pragma Inline (Flush);
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-- Flushing the data from the compressor.
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generic
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with procedure Write
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(Item : in Ada.Streams.Stream_Element_Array);
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-- User should provide this routine for accept
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-- compressed/decompressed data.
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Buffer_Size : in Ada.Streams.Stream_Element_Offset
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:= Default_Buffer_Size;
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-- Buffer size for Write user routine.
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procedure Write
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(Filter : in out Filter_Type;
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Item : in Ada.Streams.Stream_Element_Array;
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Flush : in Flush_Mode := No_Flush);
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-- Compress/Decompress data from Item to the generic parameter procedure
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-- Write. Output buffer size could be set in Buffer_Size generic parameter.
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generic
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with procedure Read
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(Item : out Ada.Streams.Stream_Element_Array;
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Last : out Ada.Streams.Stream_Element_Offset);
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-- User should provide data for compression/decompression
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-- thru this routine.
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Buffer : in out Ada.Streams.Stream_Element_Array;
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-- Buffer for keep remaining data from the previous
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-- back read.
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Rest_First, Rest_Last : in out Ada.Streams.Stream_Element_Offset;
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-- Rest_First have to be initialized to Buffer'Last + 1
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-- Rest_Last have to be initialized to Buffer'Last
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-- before usage.
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Allow_Read_Some : in Boolean := False;
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-- Is it allowed to return Last < Item'Last before end of data.
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procedure Read
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(Filter : in out Filter_Type;
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Item : out Ada.Streams.Stream_Element_Array;
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Last : out Ada.Streams.Stream_Element_Offset;
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Flush : in Flush_Mode := No_Flush);
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-- Compress/Decompress data from generic parameter procedure Read to the
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-- Item. User should provide Buffer and initialized Rest_First, Rest_Last
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-- indicators. If Allow_Read_Some is True, Read routines could return
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-- Last < Item'Last only at end of stream.
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private
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use Ada.Streams;
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pragma Assert (Ada.Streams.Stream_Element'Size = 8);
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pragma Assert (Ada.Streams.Stream_Element'Modulus = 2**8);
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type Flush_Mode is new Integer range 0 .. 5;
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type Compression_Method is new Integer range 8 .. 8;
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type Strategy_Type is new Integer range 0 .. 3;
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No_Flush : constant Flush_Mode := 0;
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Partial_Flush : constant Flush_Mode := 1;
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Sync_Flush : constant Flush_Mode := 2;
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Full_Flush : constant Flush_Mode := 3;
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Finish : constant Flush_Mode := 4;
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Block_Flush : constant Flush_Mode := 5;
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Filtered : constant Strategy_Type := 1;
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Huffman_Only : constant Strategy_Type := 2;
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RLE : constant Strategy_Type := 3;
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Default_Strategy : constant Strategy_Type := 0;
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Deflated : constant Compression_Method := 8;
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type Z_Stream;
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type Z_Stream_Access is access all Z_Stream;
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type Filter_Type is tagged limited record
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Strm : Z_Stream_Access;
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Compression : Boolean;
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Stream_End : Boolean;
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Header : Header_Type;
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CRC : Unsigned_32;
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Offset : Stream_Element_Offset;
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-- Offset for gzip header/footer output.
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end record;
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end ZLib;
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1
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project Zlib is
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|
3
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for Languages use ("Ada");
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4
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for Source_Dirs use (".");
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5
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for Object_Dir use ".";
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for Main use ("test.adb", "mtest.adb", "read.adb", "buffer_demo");
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package Compiler is
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for Default_Switches ("ada") use ("-gnatwcfilopru", "-gnatVcdfimorst", "-gnatyabcefhiklmnoprst");
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end Compiler;
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package Linker is
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for Default_Switches ("ada") use ("-lz");
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end Linker;
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+
|
16
|
+
package Builder is
|
17
|
+
for Default_Switches ("ada") use ("-s", "-gnatQ");
|
18
|
+
end Builder;
|
19
|
+
|
20
|
+
end Zlib;
|
@@ -0,0 +1,43 @@
|
|
1
|
+
This is a patched version of zlib modified to use
|
2
|
+
Pentium-optimized assembly code in the deflation algorithm. The files
|
3
|
+
changed/added by this patch are:
|
4
|
+
|
5
|
+
README.586
|
6
|
+
match.S
|
7
|
+
|
8
|
+
The effectiveness of these modifications is a bit marginal, as the the
|
9
|
+
program's bottleneck seems to be mostly L1-cache contention, for which
|
10
|
+
there is no real way to work around without rewriting the basic
|
11
|
+
algorithm. The speedup on average is around 5-10% (which is generally
|
12
|
+
less than the amount of variance between subsequent executions).
|
13
|
+
However, when used at level 9 compression, the cache contention can
|
14
|
+
drop enough for the assembly version to achieve 10-20% speedup (and
|
15
|
+
sometimes more, depending on the amount of overall redundancy in the
|
16
|
+
files). Even here, though, cache contention can still be the limiting
|
17
|
+
factor, depending on the nature of the program using the zlib library.
|
18
|
+
This may also mean that better improvements will be seen on a Pentium
|
19
|
+
with MMX, which suffers much less from L1-cache contention, but I have
|
20
|
+
not yet verified this.
|
21
|
+
|
22
|
+
Note that this code has been tailored for the Pentium in particular,
|
23
|
+
and will not perform well on the Pentium Pro (due to the use of a
|
24
|
+
partial register in the inner loop).
|
25
|
+
|
26
|
+
If you are using an assembler other than GNU as, you will have to
|
27
|
+
translate match.S to use your assembler's syntax. (Have fun.)
|
28
|
+
|
29
|
+
Brian Raiter
|
30
|
+
breadbox@muppetlabs.com
|
31
|
+
April, 1998
|
32
|
+
|
33
|
+
|
34
|
+
Added for zlib 1.1.3:
|
35
|
+
|
36
|
+
The patches come from
|
37
|
+
http://www.muppetlabs.com/~breadbox/software/assembly.html
|
38
|
+
|
39
|
+
To compile zlib with this asm file, copy match.S to the zlib directory
|
40
|
+
then do:
|
41
|
+
|
42
|
+
CFLAGS="-O3 -DASMV" ./configure
|
43
|
+
make OBJA=match.o
|
@@ -0,0 +1,364 @@
|
|
1
|
+
/* match.s -- Pentium-optimized version of longest_match()
|
2
|
+
* Written for zlib 1.1.2
|
3
|
+
* Copyright (C) 1998 Brian Raiter <breadbox@muppetlabs.com>
|
4
|
+
*
|
5
|
+
* This is free software; you can redistribute it and/or modify it
|
6
|
+
* under the terms of the GNU General Public License.
|
7
|
+
*/
|
8
|
+
|
9
|
+
#ifndef NO_UNDERLINE
|
10
|
+
#define match_init _match_init
|
11
|
+
#define longest_match _longest_match
|
12
|
+
#endif
|
13
|
+
|
14
|
+
#define MAX_MATCH (258)
|
15
|
+
#define MIN_MATCH (3)
|
16
|
+
#define MIN_LOOKAHEAD (MAX_MATCH + MIN_MATCH + 1)
|
17
|
+
#define MAX_MATCH_8 ((MAX_MATCH + 7) & ~7)
|
18
|
+
|
19
|
+
/* stack frame offsets */
|
20
|
+
|
21
|
+
#define wmask 0 /* local copy of s->wmask */
|
22
|
+
#define window 4 /* local copy of s->window */
|
23
|
+
#define windowbestlen 8 /* s->window + bestlen */
|
24
|
+
#define chainlenscanend 12 /* high word: current chain len */
|
25
|
+
/* low word: last bytes sought */
|
26
|
+
#define scanstart 16 /* first two bytes of string */
|
27
|
+
#define scanalign 20 /* dword-misalignment of string */
|
28
|
+
#define nicematch 24 /* a good enough match size */
|
29
|
+
#define bestlen 28 /* size of best match so far */
|
30
|
+
#define scan 32 /* ptr to string wanting match */
|
31
|
+
|
32
|
+
#define LocalVarsSize (36)
|
33
|
+
/* saved ebx 36 */
|
34
|
+
/* saved edi 40 */
|
35
|
+
/* saved esi 44 */
|
36
|
+
/* saved ebp 48 */
|
37
|
+
/* return address 52 */
|
38
|
+
#define deflatestate 56 /* the function arguments */
|
39
|
+
#define curmatch 60
|
40
|
+
|
41
|
+
/* Offsets for fields in the deflate_state structure. These numbers
|
42
|
+
* are calculated from the definition of deflate_state, with the
|
43
|
+
* assumption that the compiler will dword-align the fields. (Thus,
|
44
|
+
* changing the definition of deflate_state could easily cause this
|
45
|
+
* program to crash horribly, without so much as a warning at
|
46
|
+
* compile time. Sigh.)
|
47
|
+
*/
|
48
|
+
|
49
|
+
/* All the +zlib1222add offsets are due to the addition of fields
|
50
|
+
* in zlib in the deflate_state structure since the asm code was first written
|
51
|
+
* (if you compile with zlib 1.0.4 or older, use "zlib1222add equ (-4)").
|
52
|
+
* (if you compile with zlib between 1.0.5 and 1.2.2.1, use "zlib1222add equ 0").
|
53
|
+
* if you compile with zlib 1.2.2.2 or later , use "zlib1222add equ 8").
|
54
|
+
*/
|
55
|
+
|
56
|
+
#define zlib1222add (8)
|
57
|
+
|
58
|
+
#define dsWSize (36+zlib1222add)
|
59
|
+
#define dsWMask (44+zlib1222add)
|
60
|
+
#define dsWindow (48+zlib1222add)
|
61
|
+
#define dsPrev (56+zlib1222add)
|
62
|
+
#define dsMatchLen (88+zlib1222add)
|
63
|
+
#define dsPrevMatch (92+zlib1222add)
|
64
|
+
#define dsStrStart (100+zlib1222add)
|
65
|
+
#define dsMatchStart (104+zlib1222add)
|
66
|
+
#define dsLookahead (108+zlib1222add)
|
67
|
+
#define dsPrevLen (112+zlib1222add)
|
68
|
+
#define dsMaxChainLen (116+zlib1222add)
|
69
|
+
#define dsGoodMatch (132+zlib1222add)
|
70
|
+
#define dsNiceMatch (136+zlib1222add)
|
71
|
+
|
72
|
+
|
73
|
+
.file "match.S"
|
74
|
+
|
75
|
+
.globl match_init, longest_match
|
76
|
+
|
77
|
+
.text
|
78
|
+
|
79
|
+
/* uInt longest_match(deflate_state *deflatestate, IPos curmatch) */
|
80
|
+
|
81
|
+
longest_match:
|
82
|
+
|
83
|
+
/* Save registers that the compiler may be using, and adjust %esp to */
|
84
|
+
/* make room for our stack frame. */
|
85
|
+
|
86
|
+
pushl %ebp
|
87
|
+
pushl %edi
|
88
|
+
pushl %esi
|
89
|
+
pushl %ebx
|
90
|
+
subl $LocalVarsSize, %esp
|
91
|
+
|
92
|
+
/* Retrieve the function arguments. %ecx will hold cur_match */
|
93
|
+
/* throughout the entire function. %edx will hold the pointer to the */
|
94
|
+
/* deflate_state structure during the function's setup (before */
|
95
|
+
/* entering the main loop). */
|
96
|
+
|
97
|
+
movl deflatestate(%esp), %edx
|
98
|
+
movl curmatch(%esp), %ecx
|
99
|
+
|
100
|
+
/* if ((uInt)nice_match > s->lookahead) nice_match = s->lookahead; */
|
101
|
+
|
102
|
+
movl dsNiceMatch(%edx), %eax
|
103
|
+
movl dsLookahead(%edx), %ebx
|
104
|
+
cmpl %eax, %ebx
|
105
|
+
jl LookaheadLess
|
106
|
+
movl %eax, %ebx
|
107
|
+
LookaheadLess: movl %ebx, nicematch(%esp)
|
108
|
+
|
109
|
+
/* register Bytef *scan = s->window + s->strstart; */
|
110
|
+
|
111
|
+
movl dsWindow(%edx), %esi
|
112
|
+
movl %esi, window(%esp)
|
113
|
+
movl dsStrStart(%edx), %ebp
|
114
|
+
lea (%esi,%ebp), %edi
|
115
|
+
movl %edi, scan(%esp)
|
116
|
+
|
117
|
+
/* Determine how many bytes the scan ptr is off from being */
|
118
|
+
/* dword-aligned. */
|
119
|
+
|
120
|
+
movl %edi, %eax
|
121
|
+
negl %eax
|
122
|
+
andl $3, %eax
|
123
|
+
movl %eax, scanalign(%esp)
|
124
|
+
|
125
|
+
/* IPos limit = s->strstart > (IPos)MAX_DIST(s) ? */
|
126
|
+
/* s->strstart - (IPos)MAX_DIST(s) : NIL; */
|
127
|
+
|
128
|
+
movl dsWSize(%edx), %eax
|
129
|
+
subl $MIN_LOOKAHEAD, %eax
|
130
|
+
subl %eax, %ebp
|
131
|
+
jg LimitPositive
|
132
|
+
xorl %ebp, %ebp
|
133
|
+
LimitPositive:
|
134
|
+
|
135
|
+
/* unsigned chain_length = s->max_chain_length; */
|
136
|
+
/* if (s->prev_length >= s->good_match) { */
|
137
|
+
/* chain_length >>= 2; */
|
138
|
+
/* } */
|
139
|
+
|
140
|
+
movl dsPrevLen(%edx), %eax
|
141
|
+
movl dsGoodMatch(%edx), %ebx
|
142
|
+
cmpl %ebx, %eax
|
143
|
+
movl dsMaxChainLen(%edx), %ebx
|
144
|
+
jl LastMatchGood
|
145
|
+
shrl $2, %ebx
|
146
|
+
LastMatchGood:
|
147
|
+
|
148
|
+
/* chainlen is decremented once beforehand so that the function can */
|
149
|
+
/* use the sign flag instead of the zero flag for the exit test. */
|
150
|
+
/* It is then shifted into the high word, to make room for the scanend */
|
151
|
+
/* scanend value, which it will always accompany. */
|
152
|
+
|
153
|
+
decl %ebx
|
154
|
+
shll $16, %ebx
|
155
|
+
|
156
|
+
/* int best_len = s->prev_length; */
|
157
|
+
|
158
|
+
movl dsPrevLen(%edx), %eax
|
159
|
+
movl %eax, bestlen(%esp)
|
160
|
+
|
161
|
+
/* Store the sum of s->window + best_len in %esi locally, and in %esi. */
|
162
|
+
|
163
|
+
addl %eax, %esi
|
164
|
+
movl %esi, windowbestlen(%esp)
|
165
|
+
|
166
|
+
/* register ush scan_start = *(ushf*)scan; */
|
167
|
+
/* register ush scan_end = *(ushf*)(scan+best_len-1); */
|
168
|
+
|
169
|
+
movw (%edi), %bx
|
170
|
+
movw %bx, scanstart(%esp)
|
171
|
+
movw -1(%edi,%eax), %bx
|
172
|
+
movl %ebx, chainlenscanend(%esp)
|
173
|
+
|
174
|
+
/* Posf *prev = s->prev; */
|
175
|
+
/* uInt wmask = s->w_mask; */
|
176
|
+
|
177
|
+
movl dsPrev(%edx), %edi
|
178
|
+
movl dsWMask(%edx), %edx
|
179
|
+
mov %edx, wmask(%esp)
|
180
|
+
|
181
|
+
/* Jump into the main loop. */
|
182
|
+
|
183
|
+
jmp LoopEntry
|
184
|
+
|
185
|
+
.balign 16
|
186
|
+
|
187
|
+
/* do {
|
188
|
+
* match = s->window + cur_match;
|
189
|
+
* if (*(ushf*)(match+best_len-1) != scan_end ||
|
190
|
+
* *(ushf*)match != scan_start) continue;
|
191
|
+
* [...]
|
192
|
+
* } while ((cur_match = prev[cur_match & wmask]) > limit
|
193
|
+
* && --chain_length != 0);
|
194
|
+
*
|
195
|
+
* Here is the inner loop of the function. The function will spend the
|
196
|
+
* majority of its time in this loop, and majority of that time will
|
197
|
+
* be spent in the first ten instructions.
|
198
|
+
*
|
199
|
+
* Within this loop:
|
200
|
+
* %ebx = chainlenscanend - i.e., ((chainlen << 16) | scanend)
|
201
|
+
* %ecx = curmatch
|
202
|
+
* %edx = curmatch & wmask
|
203
|
+
* %esi = windowbestlen - i.e., (window + bestlen)
|
204
|
+
* %edi = prev
|
205
|
+
* %ebp = limit
|
206
|
+
*
|
207
|
+
* Two optimization notes on the choice of instructions:
|
208
|
+
*
|
209
|
+
* The first instruction uses a 16-bit address, which costs an extra,
|
210
|
+
* unpairable cycle. This is cheaper than doing a 32-bit access and
|
211
|
+
* zeroing the high word, due to the 3-cycle misalignment penalty which
|
212
|
+
* would occur half the time. This also turns out to be cheaper than
|
213
|
+
* doing two separate 8-bit accesses, as the memory is so rarely in the
|
214
|
+
* L1 cache.
|
215
|
+
*
|
216
|
+
* The window buffer, however, apparently spends a lot of time in the
|
217
|
+
* cache, and so it is faster to retrieve the word at the end of the
|
218
|
+
* match string with two 8-bit loads. The instructions that test the
|
219
|
+
* word at the beginning of the match string, however, are executed
|
220
|
+
* much less frequently, and there it was cheaper to use 16-bit
|
221
|
+
* instructions, which avoided the necessity of saving off and
|
222
|
+
* subsequently reloading one of the other registers.
|
223
|
+
*/
|
224
|
+
LookupLoop:
|
225
|
+
/* 1 U & V */
|
226
|
+
movw (%edi,%edx,2), %cx /* 2 U pipe */
|
227
|
+
movl wmask(%esp), %edx /* 2 V pipe */
|
228
|
+
cmpl %ebp, %ecx /* 3 U pipe */
|
229
|
+
jbe LeaveNow /* 3 V pipe */
|
230
|
+
subl $0x00010000, %ebx /* 4 U pipe */
|
231
|
+
js LeaveNow /* 4 V pipe */
|
232
|
+
LoopEntry: movb -1(%esi,%ecx), %al /* 5 U pipe */
|
233
|
+
andl %ecx, %edx /* 5 V pipe */
|
234
|
+
cmpb %bl, %al /* 6 U pipe */
|
235
|
+
jnz LookupLoop /* 6 V pipe */
|
236
|
+
movb (%esi,%ecx), %ah
|
237
|
+
cmpb %bh, %ah
|
238
|
+
jnz LookupLoop
|
239
|
+
movl window(%esp), %eax
|
240
|
+
movw (%eax,%ecx), %ax
|
241
|
+
cmpw scanstart(%esp), %ax
|
242
|
+
jnz LookupLoop
|
243
|
+
|
244
|
+
/* Store the current value of chainlen. */
|
245
|
+
|
246
|
+
movl %ebx, chainlenscanend(%esp)
|
247
|
+
|
248
|
+
/* Point %edi to the string under scrutiny, and %esi to the string we */
|
249
|
+
/* are hoping to match it up with. In actuality, %esi and %edi are */
|
250
|
+
/* both pointed (MAX_MATCH_8 - scanalign) bytes ahead, and %edx is */
|
251
|
+
/* initialized to -(MAX_MATCH_8 - scanalign). */
|
252
|
+
|
253
|
+
movl window(%esp), %esi
|
254
|
+
movl scan(%esp), %edi
|
255
|
+
addl %ecx, %esi
|
256
|
+
movl scanalign(%esp), %eax
|
257
|
+
movl $(-MAX_MATCH_8), %edx
|
258
|
+
lea MAX_MATCH_8(%edi,%eax), %edi
|
259
|
+
lea MAX_MATCH_8(%esi,%eax), %esi
|
260
|
+
|
261
|
+
/* Test the strings for equality, 8 bytes at a time. At the end,
|
262
|
+
* adjust %edx so that it is offset to the exact byte that mismatched.
|
263
|
+
*
|
264
|
+
* We already know at this point that the first three bytes of the
|
265
|
+
* strings match each other, and they can be safely passed over before
|
266
|
+
* starting the compare loop. So what this code does is skip over 0-3
|
267
|
+
* bytes, as much as necessary in order to dword-align the %edi
|
268
|
+
* pointer. (%esi will still be misaligned three times out of four.)
|
269
|
+
*
|
270
|
+
* It should be confessed that this loop usually does not represent
|
271
|
+
* much of the total running time. Replacing it with a more
|
272
|
+
* straightforward "rep cmpsb" would not drastically degrade
|
273
|
+
* performance.
|
274
|
+
*/
|
275
|
+
LoopCmps:
|
276
|
+
movl (%esi,%edx), %eax
|
277
|
+
movl (%edi,%edx), %ebx
|
278
|
+
xorl %ebx, %eax
|
279
|
+
jnz LeaveLoopCmps
|
280
|
+
movl 4(%esi,%edx), %eax
|
281
|
+
movl 4(%edi,%edx), %ebx
|
282
|
+
xorl %ebx, %eax
|
283
|
+
jnz LeaveLoopCmps4
|
284
|
+
addl $8, %edx
|
285
|
+
jnz LoopCmps
|
286
|
+
jmp LenMaximum
|
287
|
+
LeaveLoopCmps4: addl $4, %edx
|
288
|
+
LeaveLoopCmps: testl $0x0000FFFF, %eax
|
289
|
+
jnz LenLower
|
290
|
+
addl $2, %edx
|
291
|
+
shrl $16, %eax
|
292
|
+
LenLower: subb $1, %al
|
293
|
+
adcl $0, %edx
|
294
|
+
|
295
|
+
/* Calculate the length of the match. If it is longer than MAX_MATCH, */
|
296
|
+
/* then automatically accept it as the best possible match and leave. */
|
297
|
+
|
298
|
+
lea (%edi,%edx), %eax
|
299
|
+
movl scan(%esp), %edi
|
300
|
+
subl %edi, %eax
|
301
|
+
cmpl $MAX_MATCH, %eax
|
302
|
+
jge LenMaximum
|
303
|
+
|
304
|
+
/* If the length of the match is not longer than the best match we */
|
305
|
+
/* have so far, then forget it and return to the lookup loop. */
|
306
|
+
|
307
|
+
movl deflatestate(%esp), %edx
|
308
|
+
movl bestlen(%esp), %ebx
|
309
|
+
cmpl %ebx, %eax
|
310
|
+
jg LongerMatch
|
311
|
+
movl chainlenscanend(%esp), %ebx
|
312
|
+
movl windowbestlen(%esp), %esi
|
313
|
+
movl dsPrev(%edx), %edi
|
314
|
+
movl wmask(%esp), %edx
|
315
|
+
andl %ecx, %edx
|
316
|
+
jmp LookupLoop
|
317
|
+
|
318
|
+
/* s->match_start = cur_match; */
|
319
|
+
/* best_len = len; */
|
320
|
+
/* if (len >= nice_match) break; */
|
321
|
+
/* scan_end = *(ushf*)(scan+best_len-1); */
|
322
|
+
|
323
|
+
LongerMatch: movl nicematch(%esp), %ebx
|
324
|
+
movl %eax, bestlen(%esp)
|
325
|
+
movl %ecx, dsMatchStart(%edx)
|
326
|
+
cmpl %ebx, %eax
|
327
|
+
jge LeaveNow
|
328
|
+
movl window(%esp), %esi
|
329
|
+
addl %eax, %esi
|
330
|
+
movl %esi, windowbestlen(%esp)
|
331
|
+
movl chainlenscanend(%esp), %ebx
|
332
|
+
movw -1(%edi,%eax), %bx
|
333
|
+
movl dsPrev(%edx), %edi
|
334
|
+
movl %ebx, chainlenscanend(%esp)
|
335
|
+
movl wmask(%esp), %edx
|
336
|
+
andl %ecx, %edx
|
337
|
+
jmp LookupLoop
|
338
|
+
|
339
|
+
/* Accept the current string, with the maximum possible length. */
|
340
|
+
|
341
|
+
LenMaximum: movl deflatestate(%esp), %edx
|
342
|
+
movl $MAX_MATCH, bestlen(%esp)
|
343
|
+
movl %ecx, dsMatchStart(%edx)
|
344
|
+
|
345
|
+
/* if ((uInt)best_len <= s->lookahead) return (uInt)best_len; */
|
346
|
+
/* return s->lookahead; */
|
347
|
+
|
348
|
+
LeaveNow:
|
349
|
+
movl deflatestate(%esp), %edx
|
350
|
+
movl bestlen(%esp), %ebx
|
351
|
+
movl dsLookahead(%edx), %eax
|
352
|
+
cmpl %eax, %ebx
|
353
|
+
jg LookaheadRet
|
354
|
+
movl %ebx, %eax
|
355
|
+
LookaheadRet:
|
356
|
+
|
357
|
+
/* Restore the stack and return from whence we came. */
|
358
|
+
|
359
|
+
addl $LocalVarsSize, %esp
|
360
|
+
popl %ebx
|
361
|
+
popl %esi
|
362
|
+
popl %edi
|
363
|
+
popl %ebp
|
364
|
+
match_init: ret
|