bio-velvet_underground 0.0.1
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- checksums.yaml +7 -0
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- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.bor +107 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.emx +69 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.gcc +141 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.msc +126 -0
- data/ext/src/third-party/zlib-1.2.3/win32/VisualC.txt +3 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib.def +60 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib1.rc +39 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.in.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.3 +159 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.h +1357 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.c +318 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.h +269 -0
- data/lib/bio-velvet_underground.rb +12 -0
- data/lib/bio-velvet_underground/external/VERSION +1 -0
- data/lib/bio-velvet_underground/velvet_underground.rb +72 -0
- data/spec/binary_sequence_store_spec.rb +27 -0
- data/spec/data/1/CnyUnifiedSeq +0 -0
- data/spec/spec_helper.rb +31 -0
- metadata +456 -0
@@ -0,0 +1,32 @@
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#include <windows.h>
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#define IDR_VERSION1 1
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IDR_VERSION1 VERSIONINFO MOVEABLE IMPURE LOADONCALL DISCARDABLE
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FILEVERSION 1,2,3,0
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PRODUCTVERSION 1,2,3,0
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FILEFLAGSMASK VS_FFI_FILEFLAGSMASK
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FILEFLAGS 0
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FILEOS VOS_DOS_WINDOWS32
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FILETYPE VFT_DLL
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FILESUBTYPE 0 // not used
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BEGIN
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BLOCK "StringFileInfo"
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BEGIN
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BLOCK "040904E4"
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//language ID = U.S. English, char set = Windows, Multilingual
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BEGIN
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VALUE "FileDescription", "zlib data compression library\0"
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VALUE "FileVersion", "1.2.3.0\0"
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VALUE "InternalName", "zlib\0"
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VALUE "OriginalFilename", "zlib.dll\0"
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VALUE "ProductName", "ZLib.DLL\0"
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VALUE "Comments","DLL support by Alessandro Iacopetti & Gilles Vollant\0"
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VALUE "LegalCopyright", "(C) 1995-2003 Jean-loup Gailly & Mark Adler\0"
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END
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END
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BLOCK "VarFileInfo"
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BEGIN
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VALUE "Translation", 0x0409, 1252
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END
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END
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<?xml version="1.0" encoding = "Windows-1252"?>
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<VisualStudioProject
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ProjectType="Visual C++"
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Version="7.00"
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Name="zlibstat"
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SccProjectName=""
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SccLocalPath="">
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<Platforms>
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<Platform
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Name="Win32"/>
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</Platforms>
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<Configurations>
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<Configuration
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Name="Debug|Win32"
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OutputDirectory=".\zlibstatDebug"
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IntermediateDirectory=".\zlibstatDebug"
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ConfigurationType="4"
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UseOfMFC="0"
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ATLMinimizesCRunTimeLibraryUsage="FALSE">
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<Tool
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Name="VCCLCompilerTool"
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Optimization="0"
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AdditionalIncludeDirectories="..\..\..;..\..\masmx86"
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PreprocessorDefinitions="WIN32;ZLIB_WINAPI"
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ExceptionHandling="FALSE"
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RuntimeLibrary="5"
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PrecompiledHeaderFile=".\zlibstatDebug/zlibstat.pch"
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AssemblerListingLocation=".\zlibstatDebug/"
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ObjectFile=".\zlibstatDebug/"
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ProgramDataBaseFileName=".\zlibstatDebug/"
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WarningLevel="3"
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SuppressStartupBanner="TRUE"
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DebugInformationFormat="1"/>
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<Tool
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Name="VCCustomBuildTool"/>
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<Tool
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Name="VCLibrarianTool"
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AdditionalOptions="/NODEFAULTLIB "
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OutputFile=".\zlibstatDebug\zlibstat.lib"
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SuppressStartupBanner="TRUE"/>
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<Tool
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Name="VCMIDLTool"/>
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<Tool
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Name="VCPostBuildEventTool"/>
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<Tool
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Name="VCPreBuildEventTool"/>
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<Tool
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Name="VCPreLinkEventTool"/>
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<Tool
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Name="VCResourceCompilerTool"
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Culture="1036"/>
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<Tool
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Name="VCWebServiceProxyGeneratorTool"/>
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</Configuration>
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<Configuration
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Name="ReleaseAxp|Win32"
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OutputDirectory=".\zlibsta0"
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IntermediateDirectory=".\zlibsta0"
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ConfigurationType="4"
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UseOfMFC="0"
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ATLMinimizesCRunTimeLibraryUsage="FALSE">
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<Tool
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Name="VCCLCompilerTool"
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InlineFunctionExpansion="1"
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AdditionalIncludeDirectories="..\..\..;..\..\masmx86"
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PreprocessorDefinitions="WIN32;ZLIB_WINAPI"
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StringPooling="TRUE"
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ExceptionHandling="FALSE"
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RuntimeLibrary="4"
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EnableFunctionLevelLinking="TRUE"
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PrecompiledHeaderFile=".\zlibsta0/zlibstat.pch"
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AssemblerListingLocation=".\zlibsta0/"
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ObjectFile=".\zlibsta0/"
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ProgramDataBaseFileName=".\zlibsta0/"
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WarningLevel="3"
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SuppressStartupBanner="TRUE"/>
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<Tool
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Name="VCCustomBuildTool"/>
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<Tool
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Name="VCLibrarianTool"
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AdditionalOptions="/NODEFAULTLIB "
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OutputFile=".\zlibsta0\zlibstat.lib"
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SuppressStartupBanner="TRUE"/>
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<Tool
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Name="VCMIDLTool"/>
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<Tool
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Name="VCPostBuildEventTool"/>
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<Tool
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Name="VCPreBuildEventTool"/>
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<Tool
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Name="VCPreLinkEventTool"/>
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<Tool
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Name="VCResourceCompilerTool"/>
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<Tool
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Name="VCWebServiceProxyGeneratorTool"/>
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</Configuration>
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<Configuration
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Name="Release|Win32"
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OutputDirectory=".\zlibstat"
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IntermediateDirectory=".\zlibstat"
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ConfigurationType="4"
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UseOfMFC="0"
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ATLMinimizesCRunTimeLibraryUsage="FALSE">
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<Tool
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Name="VCCLCompilerTool"
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InlineFunctionExpansion="1"
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AdditionalIncludeDirectories="..\..\..;..\..\masmx86"
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PreprocessorDefinitions="WIN32;ZLIB_WINAPI;ASMV;ASMINF"
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StringPooling="TRUE"
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ExceptionHandling="FALSE"
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RuntimeLibrary="4"
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EnableFunctionLevelLinking="TRUE"
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PrecompiledHeaderFile=".\zlibstat/zlibstat.pch"
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AssemblerListingLocation=".\zlibstat/"
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ObjectFile=".\zlibstat/"
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ProgramDataBaseFileName=".\zlibstat/"
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WarningLevel="3"
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SuppressStartupBanner="TRUE"/>
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<Tool
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Name="VCCustomBuildTool"/>
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<Tool
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Name="VCLibrarianTool"
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AdditionalOptions="..\..\masmx86\gvmat32.obj ..\..\masmx86\inffas32.obj /NODEFAULTLIB "
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OutputFile=".\zlibstat\zlibstat.lib"
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SuppressStartupBanner="TRUE"/>
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<Tool
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Name="VCMIDLTool"/>
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<Tool
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Name="VCPostBuildEventTool"/>
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<Tool
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Name="VCPreBuildEventTool"/>
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<Tool
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Name="VCPreLinkEventTool"/>
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<Tool
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Name="VCResourceCompilerTool"
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Culture="1036"/>
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<Tool
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Name="VCWebServiceProxyGeneratorTool"/>
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</Configuration>
|
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<Configuration
|
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Name="ReleaseWithoutAsm|Win32"
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OutputDirectory="zlibstatWithoutAsm"
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IntermediateDirectory="zlibstatWithoutAsm"
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ConfigurationType="4"
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UseOfMFC="0"
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ATLMinimizesCRunTimeLibraryUsage="FALSE">
|
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<Tool
|
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Name="VCCLCompilerTool"
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InlineFunctionExpansion="1"
|
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AdditionalIncludeDirectories="..\..\..;..\..\masmx86"
|
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PreprocessorDefinitions="WIN32;ZLIB_WINAPI"
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StringPooling="TRUE"
|
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ExceptionHandling="FALSE"
|
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RuntimeLibrary="4"
|
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EnableFunctionLevelLinking="TRUE"
|
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PrecompiledHeaderFile=".\zlibstat/zlibstat.pch"
|
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AssemblerListingLocation=".\zlibstatWithoutAsm/"
|
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ObjectFile=".\zlibstatWithoutAsm/"
|
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ProgramDataBaseFileName=".\zlibstatWithoutAsm/"
|
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WarningLevel="3"
|
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SuppressStartupBanner="TRUE"/>
|
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<Tool
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Name="VCCustomBuildTool"/>
|
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<Tool
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Name="VCLibrarianTool"
|
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AdditionalOptions=" /NODEFAULTLIB "
|
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OutputFile=".\zlibstatWithoutAsm\zlibstat.lib"
|
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SuppressStartupBanner="TRUE"/>
|
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<Tool
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Name="VCMIDLTool"/>
|
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<Tool
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Name="VCPostBuildEventTool"/>
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<Tool
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Name="VCPreBuildEventTool"/>
|
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<Tool
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Name="VCPreLinkEventTool"/>
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<Tool
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Name="VCResourceCompilerTool"
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Culture="1036"/>
|
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<Tool
|
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Name="VCWebServiceProxyGeneratorTool"/>
|
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</Configuration>
|
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</Configurations>
|
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<Files>
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<Filter
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Name="Source Files"
|
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Filter="">
|
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<File
|
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RelativePath="..\..\..\adler32.c">
|
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</File>
|
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<File
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RelativePath="..\..\..\compress.c">
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</File>
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<File
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RelativePath="..\..\..\crc32.c">
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</File>
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<File
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RelativePath="..\..\..\deflate.c">
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</File>
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<File
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RelativePath="..\..\masmx86\gvmat32c.c">
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</File>
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<File
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RelativePath="..\..\..\gzio.c">
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</File>
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<File
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RelativePath="..\..\..\infback.c">
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</File>
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<File
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RelativePath="..\..\..\inffast.c">
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</File>
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<File
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RelativePath="..\..\..\inflate.c">
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</File>
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<File
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RelativePath="..\..\..\inftrees.c">
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</File>
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<File
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RelativePath="..\..\minizip\ioapi.c">
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</File>
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<File
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RelativePath="..\..\..\trees.c">
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</File>
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<File
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RelativePath="..\..\..\uncompr.c">
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</File>
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<File
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RelativePath="..\..\minizip\unzip.c">
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</File>
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<File
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RelativePath="..\..\minizip\zip.c">
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</File>
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<File
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RelativePath=".\zlib.rc">
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</File>
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<File
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RelativePath=".\zlibvc.def">
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</File>
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<File
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RelativePath="..\..\..\zutil.c">
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</File>
|
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</Filter>
|
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</Files>
|
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<Globals>
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</Globals>
|
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</VisualStudioProject>
|
@@ -0,0 +1,92 @@
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1
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|
2
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VERSION 1.23
|
3
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|
4
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HEAPSIZE 1048576,8192
|
5
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|
6
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EXPORTS
|
7
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+
adler32 @1
|
8
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+
compress @2
|
9
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crc32 @3
|
10
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+
deflate @4
|
11
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deflateCopy @5
|
12
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deflateEnd @6
|
13
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deflateInit2_ @7
|
14
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deflateInit_ @8
|
15
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+
deflateParams @9
|
16
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+
deflateReset @10
|
17
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deflateSetDictionary @11
|
18
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gzclose @12
|
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gzdopen @13
|
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gzerror @14
|
21
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gzflush @15
|
22
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gzopen @16
|
23
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gzread @17
|
24
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gzwrite @18
|
25
|
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inflate @19
|
26
|
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inflateEnd @20
|
27
|
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inflateInit2_ @21
|
28
|
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inflateInit_ @22
|
29
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inflateReset @23
|
30
|
+
inflateSetDictionary @24
|
31
|
+
inflateSync @25
|
32
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uncompress @26
|
33
|
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zlibVersion @27
|
34
|
+
gzprintf @28
|
35
|
+
gzputc @29
|
36
|
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gzgetc @30
|
37
|
+
gzseek @31
|
38
|
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gzrewind @32
|
39
|
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gztell @33
|
40
|
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gzeof @34
|
41
|
+
gzsetparams @35
|
42
|
+
zError @36
|
43
|
+
inflateSyncPoint @37
|
44
|
+
get_crc_table @38
|
45
|
+
compress2 @39
|
46
|
+
gzputs @40
|
47
|
+
gzgets @41
|
48
|
+
inflateCopy @42
|
49
|
+
inflateBackInit_ @43
|
50
|
+
inflateBack @44
|
51
|
+
inflateBackEnd @45
|
52
|
+
compressBound @46
|
53
|
+
deflateBound @47
|
54
|
+
gzclearerr @48
|
55
|
+
gzungetc @49
|
56
|
+
zlibCompileFlags @50
|
57
|
+
deflatePrime @51
|
58
|
+
|
59
|
+
unzOpen @61
|
60
|
+
unzClose @62
|
61
|
+
unzGetGlobalInfo @63
|
62
|
+
unzGetCurrentFileInfo @64
|
63
|
+
unzGoToFirstFile @65
|
64
|
+
unzGoToNextFile @66
|
65
|
+
unzOpenCurrentFile @67
|
66
|
+
unzReadCurrentFile @68
|
67
|
+
unzOpenCurrentFile3 @69
|
68
|
+
unztell @70
|
69
|
+
unzeof @71
|
70
|
+
unzCloseCurrentFile @72
|
71
|
+
unzGetGlobalComment @73
|
72
|
+
unzStringFileNameCompare @74
|
73
|
+
unzLocateFile @75
|
74
|
+
unzGetLocalExtrafield @76
|
75
|
+
unzOpen2 @77
|
76
|
+
unzOpenCurrentFile2 @78
|
77
|
+
unzOpenCurrentFilePassword @79
|
78
|
+
|
79
|
+
zipOpen @80
|
80
|
+
zipOpenNewFileInZip @81
|
81
|
+
zipWriteInFileInZip @82
|
82
|
+
zipCloseFileInZip @83
|
83
|
+
zipClose @84
|
84
|
+
zipOpenNewFileInZip2 @86
|
85
|
+
zipCloseFileInZipRaw @87
|
86
|
+
zipOpen2 @88
|
87
|
+
zipOpenNewFileInZip3 @89
|
88
|
+
|
89
|
+
unzGetFilePos @100
|
90
|
+
unzGoToFilePos @101
|
91
|
+
|
92
|
+
fill_win32_filefunc @110
|
@@ -0,0 +1,78 @@
|
|
1
|
+
Microsoft Visual Studio Solution File, Format Version 7.00
|
2
|
+
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "zlibstat", "zlibstat.vcproj", "{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}"
|
3
|
+
EndProject
|
4
|
+
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "zlibvc", "zlibvc.vcproj", "{8FD826F8-3739-44E6-8CC8-997122E53B8D}"
|
5
|
+
EndProject
|
6
|
+
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "minizip", "minizip.vcproj", "{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}"
|
7
|
+
EndProject
|
8
|
+
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "miniunz", "miniunz.vcproj", "{C52F9E7B-498A-42BE-8DB4-85A15694382A}"
|
9
|
+
EndProject
|
10
|
+
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "testZlibDll", "testzlib.vcproj", "{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}"
|
11
|
+
EndProject
|
12
|
+
Global
|
13
|
+
GlobalSection(SolutionConfiguration) = preSolution
|
14
|
+
ConfigName.0 = Debug
|
15
|
+
ConfigName.1 = Release
|
16
|
+
ConfigName.2 = ReleaseAxp
|
17
|
+
ConfigName.3 = ReleaseWithoutAsm
|
18
|
+
ConfigName.4 = ReleaseWithoutCrtdll
|
19
|
+
EndGlobalSection
|
20
|
+
GlobalSection(ProjectDependencies) = postSolution
|
21
|
+
EndGlobalSection
|
22
|
+
GlobalSection(ProjectConfiguration) = postSolution
|
23
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.Debug.ActiveCfg = Debug|Win32
|
24
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.Debug.Build.0 = Debug|Win32
|
25
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.Release.ActiveCfg = Release|Win32
|
26
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.Release.Build.0 = Release|Win32
|
27
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.ReleaseAxp.ActiveCfg = ReleaseAxp|Win32
|
28
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.ReleaseAxp.Build.0 = ReleaseAxp|Win32
|
29
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.ReleaseWithoutAsm.ActiveCfg = ReleaseWithoutAsm|Win32
|
30
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.ReleaseWithoutAsm.Build.0 = ReleaseWithoutAsm|Win32
|
31
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.ReleaseWithoutCrtdll.ActiveCfg = ReleaseAxp|Win32
|
32
|
+
{745DEC58-EBB3-47A9-A9B8-4C6627C01BF8}.ReleaseWithoutCrtdll.Build.0 = ReleaseAxp|Win32
|
33
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.Debug.ActiveCfg = Debug|Win32
|
34
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.Debug.Build.0 = Debug|Win32
|
35
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.Release.ActiveCfg = Release|Win32
|
36
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.Release.Build.0 = Release|Win32
|
37
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.ReleaseAxp.ActiveCfg = ReleaseAxp|Win32
|
38
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.ReleaseAxp.Build.0 = ReleaseAxp|Win32
|
39
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.ReleaseWithoutAsm.ActiveCfg = ReleaseWithoutAsm|Win32
|
40
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.ReleaseWithoutAsm.Build.0 = ReleaseWithoutAsm|Win32
|
41
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.ReleaseWithoutCrtdll.ActiveCfg = ReleaseWithoutCrtdll|Win32
|
42
|
+
{8FD826F8-3739-44E6-8CC8-997122E53B8D}.ReleaseWithoutCrtdll.Build.0 = ReleaseWithoutCrtdll|Win32
|
43
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.Debug.ActiveCfg = Debug|Win32
|
44
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.Debug.Build.0 = Debug|Win32
|
45
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.Release.ActiveCfg = Release|Win32
|
46
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.Release.Build.0 = Release|Win32
|
47
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.ReleaseAxp.ActiveCfg = Release|Win32
|
48
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.ReleaseAxp.Build.0 = Release|Win32
|
49
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.ReleaseWithoutAsm.ActiveCfg = Release|Win32
|
50
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.ReleaseWithoutAsm.Build.0 = Release|Win32
|
51
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.ReleaseWithoutCrtdll.ActiveCfg = Release|Win32
|
52
|
+
{48CDD9DC-E09F-4135-9C0C-4FE50C3C654B}.ReleaseWithoutCrtdll.Build.0 = Release|Win32
|
53
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.Debug.ActiveCfg = Debug|Win32
|
54
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.Debug.Build.0 = Debug|Win32
|
55
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.Release.ActiveCfg = Release|Win32
|
56
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.Release.Build.0 = Release|Win32
|
57
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.ReleaseAxp.ActiveCfg = Release|Win32
|
58
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.ReleaseAxp.Build.0 = Release|Win32
|
59
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.ReleaseWithoutAsm.ActiveCfg = Release|Win32
|
60
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.ReleaseWithoutAsm.Build.0 = Release|Win32
|
61
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.ReleaseWithoutCrtdll.ActiveCfg = Release|Win32
|
62
|
+
{C52F9E7B-498A-42BE-8DB4-85A15694382A}.ReleaseWithoutCrtdll.Build.0 = Release|Win32
|
63
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.Debug.ActiveCfg = Debug|Win32
|
64
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.Debug.Build.0 = Debug|Win32
|
65
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.Release.ActiveCfg = Release|Win32
|
66
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.Release.Build.0 = Release|Win32
|
67
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.ReleaseAxp.ActiveCfg = Release|Win32
|
68
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.ReleaseAxp.Build.0 = Release|Win32
|
69
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.ReleaseWithoutAsm.ActiveCfg = Release|Win32
|
70
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.ReleaseWithoutAsm.Build.0 = Release|Win32
|
71
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.ReleaseWithoutCrtdll.ActiveCfg = Release|Win32
|
72
|
+
{AA6666AA-E09F-4135-9C0C-4FE50C3C654C}.ReleaseWithoutCrtdll.Build.0 = Release|Win32
|
73
|
+
EndGlobalSection
|
74
|
+
GlobalSection(ExtensibilityGlobals) = postSolution
|
75
|
+
EndGlobalSection
|
76
|
+
GlobalSection(ExtensibilityAddIns) = postSolution
|
77
|
+
EndGlobalSection
|
78
|
+
EndGlobal
|