bio-velvet_underground 0.0.1
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- checksums.yaml +7 -0
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- data/ext/src/third-party/zlib-1.2.3/uncompr.c +61 -0
- data/ext/src/third-party/zlib-1.2.3/win32/DLL_FAQ.txt +397 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.bor +107 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.emx +69 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.gcc +141 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.msc +126 -0
- data/ext/src/third-party/zlib-1.2.3/win32/VisualC.txt +3 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib.def +60 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib1.rc +39 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.in.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.3 +159 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.h +1357 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.c +318 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.h +269 -0
- data/lib/bio-velvet_underground.rb +12 -0
- data/lib/bio-velvet_underground/external/VERSION +1 -0
- data/lib/bio-velvet_underground/velvet_underground.rb +72 -0
- data/spec/binary_sequence_store_spec.rb +27 -0
- data/spec/data/1/CnyUnifiedSeq +0 -0
- data/spec/spec_helper.rb +31 -0
- metadata +456 -0
@@ -0,0 +1,37 @@
|
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1
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+
/* infback9.h -- header for using inflateBack9 functions
|
2
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* Copyright (C) 2003 Mark Adler
|
3
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* For conditions of distribution and use, see copyright notice in zlib.h
|
4
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+
*/
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5
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+
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6
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/*
|
7
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+
* This header file and associated patches provide a decoder for PKWare's
|
8
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+
* undocumented deflate64 compression method (method 9). Use with infback9.c,
|
9
|
+
* inftree9.h, inftree9.c, and inffix9.h. These patches are not supported.
|
10
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+
* This should be compiled with zlib, since it uses zutil.h and zutil.o.
|
11
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+
* This code has not yet been tested on 16-bit architectures. See the
|
12
|
+
* comments in zlib.h for inflateBack() usage. These functions are used
|
13
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+
* identically, except that there is no windowBits parameter, and a 64K
|
14
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+
* window must be provided. Also if int's are 16 bits, then a zero for
|
15
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+
* the third parameter of the "out" function actually means 65536UL.
|
16
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* zlib.h must be included before this header file.
|
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+
*/
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#ifdef __cplusplus
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extern "C" {
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#endif
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ZEXTERN int ZEXPORT inflateBack9 OF((z_stream FAR *strm,
|
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+
in_func in, void FAR *in_desc,
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out_func out, void FAR *out_desc));
|
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ZEXTERN int ZEXPORT inflateBack9End OF((z_stream FAR *strm));
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+
ZEXTERN int ZEXPORT inflateBack9Init_ OF((z_stream FAR *strm,
|
28
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+
unsigned char FAR *window,
|
29
|
+
const char *version,
|
30
|
+
int stream_size));
|
31
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+
#define inflateBack9Init(strm, window) \
|
32
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+
inflateBack9Init_((strm), (window), \
|
33
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+
ZLIB_VERSION, sizeof(z_stream))
|
34
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+
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+
#ifdef __cplusplus
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}
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+
#endif
|
@@ -0,0 +1,107 @@
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1
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/* inffix9.h -- table for decoding deflate64 fixed codes
|
2
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+
* Generated automatically by makefixed9().
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3
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+
*/
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4
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+
|
5
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/* WARNING: this file should *not* be used by applications.
|
6
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It is part of the implementation of this library and is
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7
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+
subject to change. Applications should only use zlib.h.
|
8
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+
*/
|
9
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+
|
10
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+
static const code lenfix[512] = {
|
11
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+
{96,7,0},{0,8,80},{0,8,16},{132,8,115},{130,7,31},{0,8,112},
|
12
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+
{0,8,48},{0,9,192},{128,7,10},{0,8,96},{0,8,32},{0,9,160},
|
13
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+
{0,8,0},{0,8,128},{0,8,64},{0,9,224},{128,7,6},{0,8,88},
|
14
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+
{0,8,24},{0,9,144},{131,7,59},{0,8,120},{0,8,56},{0,9,208},
|
15
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+
{129,7,17},{0,8,104},{0,8,40},{0,9,176},{0,8,8},{0,8,136},
|
16
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+
{0,8,72},{0,9,240},{128,7,4},{0,8,84},{0,8,20},{133,8,227},
|
17
|
+
{131,7,43},{0,8,116},{0,8,52},{0,9,200},{129,7,13},{0,8,100},
|
18
|
+
{0,8,36},{0,9,168},{0,8,4},{0,8,132},{0,8,68},{0,9,232},
|
19
|
+
{128,7,8},{0,8,92},{0,8,28},{0,9,152},{132,7,83},{0,8,124},
|
20
|
+
{0,8,60},{0,9,216},{130,7,23},{0,8,108},{0,8,44},{0,9,184},
|
21
|
+
{0,8,12},{0,8,140},{0,8,76},{0,9,248},{128,7,3},{0,8,82},
|
22
|
+
{0,8,18},{133,8,163},{131,7,35},{0,8,114},{0,8,50},{0,9,196},
|
23
|
+
{129,7,11},{0,8,98},{0,8,34},{0,9,164},{0,8,2},{0,8,130},
|
24
|
+
{0,8,66},{0,9,228},{128,7,7},{0,8,90},{0,8,26},{0,9,148},
|
25
|
+
{132,7,67},{0,8,122},{0,8,58},{0,9,212},{130,7,19},{0,8,106},
|
26
|
+
{0,8,42},{0,9,180},{0,8,10},{0,8,138},{0,8,74},{0,9,244},
|
27
|
+
{128,7,5},{0,8,86},{0,8,22},{65,8,0},{131,7,51},{0,8,118},
|
28
|
+
{0,8,54},{0,9,204},{129,7,15},{0,8,102},{0,8,38},{0,9,172},
|
29
|
+
{0,8,6},{0,8,134},{0,8,70},{0,9,236},{128,7,9},{0,8,94},
|
30
|
+
{0,8,30},{0,9,156},{132,7,99},{0,8,126},{0,8,62},{0,9,220},
|
31
|
+
{130,7,27},{0,8,110},{0,8,46},{0,9,188},{0,8,14},{0,8,142},
|
32
|
+
{0,8,78},{0,9,252},{96,7,0},{0,8,81},{0,8,17},{133,8,131},
|
33
|
+
{130,7,31},{0,8,113},{0,8,49},{0,9,194},{128,7,10},{0,8,97},
|
34
|
+
{0,8,33},{0,9,162},{0,8,1},{0,8,129},{0,8,65},{0,9,226},
|
35
|
+
{128,7,6},{0,8,89},{0,8,25},{0,9,146},{131,7,59},{0,8,121},
|
36
|
+
{0,8,57},{0,9,210},{129,7,17},{0,8,105},{0,8,41},{0,9,178},
|
37
|
+
{0,8,9},{0,8,137},{0,8,73},{0,9,242},{128,7,4},{0,8,85},
|
38
|
+
{0,8,21},{144,8,3},{131,7,43},{0,8,117},{0,8,53},{0,9,202},
|
39
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+
{129,7,13},{0,8,101},{0,8,37},{0,9,170},{0,8,5},{0,8,133},
|
40
|
+
{0,8,69},{0,9,234},{128,7,8},{0,8,93},{0,8,29},{0,9,154},
|
41
|
+
{132,7,83},{0,8,125},{0,8,61},{0,9,218},{130,7,23},{0,8,109},
|
42
|
+
{0,8,45},{0,9,186},{0,8,13},{0,8,141},{0,8,77},{0,9,250},
|
43
|
+
{128,7,3},{0,8,83},{0,8,19},{133,8,195},{131,7,35},{0,8,115},
|
44
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+
{0,8,51},{0,9,198},{129,7,11},{0,8,99},{0,8,35},{0,9,166},
|
45
|
+
{0,8,3},{0,8,131},{0,8,67},{0,9,230},{128,7,7},{0,8,91},
|
46
|
+
{0,8,27},{0,9,150},{132,7,67},{0,8,123},{0,8,59},{0,9,214},
|
47
|
+
{130,7,19},{0,8,107},{0,8,43},{0,9,182},{0,8,11},{0,8,139},
|
48
|
+
{0,8,75},{0,9,246},{128,7,5},{0,8,87},{0,8,23},{77,8,0},
|
49
|
+
{131,7,51},{0,8,119},{0,8,55},{0,9,206},{129,7,15},{0,8,103},
|
50
|
+
{0,8,39},{0,9,174},{0,8,7},{0,8,135},{0,8,71},{0,9,238},
|
51
|
+
{128,7,9},{0,8,95},{0,8,31},{0,9,158},{132,7,99},{0,8,127},
|
52
|
+
{0,8,63},{0,9,222},{130,7,27},{0,8,111},{0,8,47},{0,9,190},
|
53
|
+
{0,8,15},{0,8,143},{0,8,79},{0,9,254},{96,7,0},{0,8,80},
|
54
|
+
{0,8,16},{132,8,115},{130,7,31},{0,8,112},{0,8,48},{0,9,193},
|
55
|
+
{128,7,10},{0,8,96},{0,8,32},{0,9,161},{0,8,0},{0,8,128},
|
56
|
+
{0,8,64},{0,9,225},{128,7,6},{0,8,88},{0,8,24},{0,9,145},
|
57
|
+
{131,7,59},{0,8,120},{0,8,56},{0,9,209},{129,7,17},{0,8,104},
|
58
|
+
{0,8,40},{0,9,177},{0,8,8},{0,8,136},{0,8,72},{0,9,241},
|
59
|
+
{128,7,4},{0,8,84},{0,8,20},{133,8,227},{131,7,43},{0,8,116},
|
60
|
+
{0,8,52},{0,9,201},{129,7,13},{0,8,100},{0,8,36},{0,9,169},
|
61
|
+
{0,8,4},{0,8,132},{0,8,68},{0,9,233},{128,7,8},{0,8,92},
|
62
|
+
{0,8,28},{0,9,153},{132,7,83},{0,8,124},{0,8,60},{0,9,217},
|
63
|
+
{130,7,23},{0,8,108},{0,8,44},{0,9,185},{0,8,12},{0,8,140},
|
64
|
+
{0,8,76},{0,9,249},{128,7,3},{0,8,82},{0,8,18},{133,8,163},
|
65
|
+
{131,7,35},{0,8,114},{0,8,50},{0,9,197},{129,7,11},{0,8,98},
|
66
|
+
{0,8,34},{0,9,165},{0,8,2},{0,8,130},{0,8,66},{0,9,229},
|
67
|
+
{128,7,7},{0,8,90},{0,8,26},{0,9,149},{132,7,67},{0,8,122},
|
68
|
+
{0,8,58},{0,9,213},{130,7,19},{0,8,106},{0,8,42},{0,9,181},
|
69
|
+
{0,8,10},{0,8,138},{0,8,74},{0,9,245},{128,7,5},{0,8,86},
|
70
|
+
{0,8,22},{65,8,0},{131,7,51},{0,8,118},{0,8,54},{0,9,205},
|
71
|
+
{129,7,15},{0,8,102},{0,8,38},{0,9,173},{0,8,6},{0,8,134},
|
72
|
+
{0,8,70},{0,9,237},{128,7,9},{0,8,94},{0,8,30},{0,9,157},
|
73
|
+
{132,7,99},{0,8,126},{0,8,62},{0,9,221},{130,7,27},{0,8,110},
|
74
|
+
{0,8,46},{0,9,189},{0,8,14},{0,8,142},{0,8,78},{0,9,253},
|
75
|
+
{96,7,0},{0,8,81},{0,8,17},{133,8,131},{130,7,31},{0,8,113},
|
76
|
+
{0,8,49},{0,9,195},{128,7,10},{0,8,97},{0,8,33},{0,9,163},
|
77
|
+
{0,8,1},{0,8,129},{0,8,65},{0,9,227},{128,7,6},{0,8,89},
|
78
|
+
{0,8,25},{0,9,147},{131,7,59},{0,8,121},{0,8,57},{0,9,211},
|
79
|
+
{129,7,17},{0,8,105},{0,8,41},{0,9,179},{0,8,9},{0,8,137},
|
80
|
+
{0,8,73},{0,9,243},{128,7,4},{0,8,85},{0,8,21},{144,8,3},
|
81
|
+
{131,7,43},{0,8,117},{0,8,53},{0,9,203},{129,7,13},{0,8,101},
|
82
|
+
{0,8,37},{0,9,171},{0,8,5},{0,8,133},{0,8,69},{0,9,235},
|
83
|
+
{128,7,8},{0,8,93},{0,8,29},{0,9,155},{132,7,83},{0,8,125},
|
84
|
+
{0,8,61},{0,9,219},{130,7,23},{0,8,109},{0,8,45},{0,9,187},
|
85
|
+
{0,8,13},{0,8,141},{0,8,77},{0,9,251},{128,7,3},{0,8,83},
|
86
|
+
{0,8,19},{133,8,195},{131,7,35},{0,8,115},{0,8,51},{0,9,199},
|
87
|
+
{129,7,11},{0,8,99},{0,8,35},{0,9,167},{0,8,3},{0,8,131},
|
88
|
+
{0,8,67},{0,9,231},{128,7,7},{0,8,91},{0,8,27},{0,9,151},
|
89
|
+
{132,7,67},{0,8,123},{0,8,59},{0,9,215},{130,7,19},{0,8,107},
|
90
|
+
{0,8,43},{0,9,183},{0,8,11},{0,8,139},{0,8,75},{0,9,247},
|
91
|
+
{128,7,5},{0,8,87},{0,8,23},{77,8,0},{131,7,51},{0,8,119},
|
92
|
+
{0,8,55},{0,9,207},{129,7,15},{0,8,103},{0,8,39},{0,9,175},
|
93
|
+
{0,8,7},{0,8,135},{0,8,71},{0,9,239},{128,7,9},{0,8,95},
|
94
|
+
{0,8,31},{0,9,159},{132,7,99},{0,8,127},{0,8,63},{0,9,223},
|
95
|
+
{130,7,27},{0,8,111},{0,8,47},{0,9,191},{0,8,15},{0,8,143},
|
96
|
+
{0,8,79},{0,9,255}
|
97
|
+
};
|
98
|
+
|
99
|
+
static const code distfix[32] = {
|
100
|
+
{128,5,1},{135,5,257},{131,5,17},{139,5,4097},{129,5,5},
|
101
|
+
{137,5,1025},{133,5,65},{141,5,16385},{128,5,3},{136,5,513},
|
102
|
+
{132,5,33},{140,5,8193},{130,5,9},{138,5,2049},{134,5,129},
|
103
|
+
{142,5,32769},{128,5,2},{135,5,385},{131,5,25},{139,5,6145},
|
104
|
+
{129,5,7},{137,5,1537},{133,5,97},{141,5,24577},{128,5,4},
|
105
|
+
{136,5,769},{132,5,49},{140,5,12289},{130,5,13},{138,5,3073},
|
106
|
+
{134,5,193},{142,5,49153}
|
107
|
+
};
|
@@ -0,0 +1,47 @@
|
|
1
|
+
/* inflate9.h -- internal inflate state definition
|
2
|
+
* Copyright (C) 1995-2003 Mark Adler
|
3
|
+
* For conditions of distribution and use, see copyright notice in zlib.h
|
4
|
+
*/
|
5
|
+
|
6
|
+
/* WARNING: this file should *not* be used by applications. It is
|
7
|
+
part of the implementation of the compression library and is
|
8
|
+
subject to change. Applications should only use zlib.h.
|
9
|
+
*/
|
10
|
+
|
11
|
+
/* Possible inflate modes between inflate() calls */
|
12
|
+
typedef enum {
|
13
|
+
TYPE, /* i: waiting for type bits, including last-flag bit */
|
14
|
+
STORED, /* i: waiting for stored size (length and complement) */
|
15
|
+
TABLE, /* i: waiting for dynamic block table lengths */
|
16
|
+
LEN, /* i: waiting for length/lit code */
|
17
|
+
DONE, /* finished check, done -- remain here until reset */
|
18
|
+
BAD /* got a data error -- remain here until reset */
|
19
|
+
} inflate_mode;
|
20
|
+
|
21
|
+
/*
|
22
|
+
State transitions between above modes -
|
23
|
+
|
24
|
+
(most modes can go to the BAD mode -- not shown for clarity)
|
25
|
+
|
26
|
+
Read deflate blocks:
|
27
|
+
TYPE -> STORED or TABLE or LEN or DONE
|
28
|
+
STORED -> TYPE
|
29
|
+
TABLE -> LENLENS -> CODELENS -> LEN
|
30
|
+
Read deflate codes:
|
31
|
+
LEN -> LEN or TYPE
|
32
|
+
*/
|
33
|
+
|
34
|
+
/* state maintained between inflate() calls. Approximately 7K bytes. */
|
35
|
+
struct inflate_state {
|
36
|
+
/* sliding window */
|
37
|
+
unsigned char FAR *window; /* allocated sliding window, if needed */
|
38
|
+
/* dynamic table building */
|
39
|
+
unsigned ncode; /* number of code length code lengths */
|
40
|
+
unsigned nlen; /* number of length code lengths */
|
41
|
+
unsigned ndist; /* number of distance code lengths */
|
42
|
+
unsigned have; /* number of code lengths in lens[] */
|
43
|
+
code FAR *next; /* next available space in codes[] */
|
44
|
+
unsigned short lens[320]; /* temporary storage for code lengths */
|
45
|
+
unsigned short work[288]; /* work area for code table building */
|
46
|
+
code codes[ENOUGH]; /* space for code tables */
|
47
|
+
};
|
@@ -0,0 +1,323 @@
|
|
1
|
+
/* inftree9.c -- generate Huffman trees for efficient decoding
|
2
|
+
* Copyright (C) 1995-2005 Mark Adler
|
3
|
+
* For conditions of distribution and use, see copyright notice in zlib.h
|
4
|
+
*/
|
5
|
+
|
6
|
+
#include "zutil.h"
|
7
|
+
#include "inftree9.h"
|
8
|
+
|
9
|
+
#define MAXBITS 15
|
10
|
+
|
11
|
+
const char inflate9_copyright[] =
|
12
|
+
" inflate9 1.2.3 Copyright 1995-2005 Mark Adler ";
|
13
|
+
/*
|
14
|
+
If you use the zlib library in a product, an acknowledgment is welcome
|
15
|
+
in the documentation of your product. If for some reason you cannot
|
16
|
+
include such an acknowledgment, I would appreciate that you keep this
|
17
|
+
copyright string in the executable of your product.
|
18
|
+
*/
|
19
|
+
|
20
|
+
/*
|
21
|
+
Build a set of tables to decode the provided canonical Huffman code.
|
22
|
+
The code lengths are lens[0..codes-1]. The result starts at *table,
|
23
|
+
whose indices are 0..2^bits-1. work is a writable array of at least
|
24
|
+
lens shorts, which is used as a work area. type is the type of code
|
25
|
+
to be generated, CODES, LENS, or DISTS. On return, zero is success,
|
26
|
+
-1 is an invalid code, and +1 means that ENOUGH isn't enough. table
|
27
|
+
on return points to the next available entry's address. bits is the
|
28
|
+
requested root table index bits, and on return it is the actual root
|
29
|
+
table index bits. It will differ if the request is greater than the
|
30
|
+
longest code or if it is less than the shortest code.
|
31
|
+
*/
|
32
|
+
int inflate_table9(type, lens, codes, table, bits, work)
|
33
|
+
codetype type;
|
34
|
+
unsigned short FAR *lens;
|
35
|
+
unsigned codes;
|
36
|
+
code FAR * FAR *table;
|
37
|
+
unsigned FAR *bits;
|
38
|
+
unsigned short FAR *work;
|
39
|
+
{
|
40
|
+
unsigned len; /* a code's length in bits */
|
41
|
+
unsigned sym; /* index of code symbols */
|
42
|
+
unsigned min, max; /* minimum and maximum code lengths */
|
43
|
+
unsigned root; /* number of index bits for root table */
|
44
|
+
unsigned curr; /* number of index bits for current table */
|
45
|
+
unsigned drop; /* code bits to drop for sub-table */
|
46
|
+
int left; /* number of prefix codes available */
|
47
|
+
unsigned used; /* code entries in table used */
|
48
|
+
unsigned huff; /* Huffman code */
|
49
|
+
unsigned incr; /* for incrementing code, index */
|
50
|
+
unsigned fill; /* index for replicating entries */
|
51
|
+
unsigned low; /* low bits for current root entry */
|
52
|
+
unsigned mask; /* mask for low root bits */
|
53
|
+
code this; /* table entry for duplication */
|
54
|
+
code FAR *next; /* next available space in table */
|
55
|
+
const unsigned short FAR *base; /* base value table to use */
|
56
|
+
const unsigned short FAR *extra; /* extra bits table to use */
|
57
|
+
int end; /* use base and extra for symbol > end */
|
58
|
+
unsigned short count[MAXBITS+1]; /* number of codes of each length */
|
59
|
+
unsigned short offs[MAXBITS+1]; /* offsets in table for each length */
|
60
|
+
static const unsigned short lbase[31] = { /* Length codes 257..285 base */
|
61
|
+
3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 15, 17,
|
62
|
+
19, 23, 27, 31, 35, 43, 51, 59, 67, 83, 99, 115,
|
63
|
+
131, 163, 195, 227, 3, 0, 0};
|
64
|
+
static const unsigned short lext[31] = { /* Length codes 257..285 extra */
|
65
|
+
128, 128, 128, 128, 128, 128, 128, 128, 129, 129, 129, 129,
|
66
|
+
130, 130, 130, 130, 131, 131, 131, 131, 132, 132, 132, 132,
|
67
|
+
133, 133, 133, 133, 144, 201, 196};
|
68
|
+
static const unsigned short dbase[32] = { /* Distance codes 0..31 base */
|
69
|
+
1, 2, 3, 4, 5, 7, 9, 13, 17, 25, 33, 49,
|
70
|
+
65, 97, 129, 193, 257, 385, 513, 769, 1025, 1537, 2049, 3073,
|
71
|
+
4097, 6145, 8193, 12289, 16385, 24577, 32769, 49153};
|
72
|
+
static const unsigned short dext[32] = { /* Distance codes 0..31 extra */
|
73
|
+
128, 128, 128, 128, 129, 129, 130, 130, 131, 131, 132, 132,
|
74
|
+
133, 133, 134, 134, 135, 135, 136, 136, 137, 137, 138, 138,
|
75
|
+
139, 139, 140, 140, 141, 141, 142, 142};
|
76
|
+
|
77
|
+
/*
|
78
|
+
Process a set of code lengths to create a canonical Huffman code. The
|
79
|
+
code lengths are lens[0..codes-1]. Each length corresponds to the
|
80
|
+
symbols 0..codes-1. The Huffman code is generated by first sorting the
|
81
|
+
symbols by length from short to long, and retaining the symbol order
|
82
|
+
for codes with equal lengths. Then the code starts with all zero bits
|
83
|
+
for the first code of the shortest length, and the codes are integer
|
84
|
+
increments for the same length, and zeros are appended as the length
|
85
|
+
increases. For the deflate format, these bits are stored backwards
|
86
|
+
from their more natural integer increment ordering, and so when the
|
87
|
+
decoding tables are built in the large loop below, the integer codes
|
88
|
+
are incremented backwards.
|
89
|
+
|
90
|
+
This routine assumes, but does not check, that all of the entries in
|
91
|
+
lens[] are in the range 0..MAXBITS. The caller must assure this.
|
92
|
+
1..MAXBITS is interpreted as that code length. zero means that that
|
93
|
+
symbol does not occur in this code.
|
94
|
+
|
95
|
+
The codes are sorted by computing a count of codes for each length,
|
96
|
+
creating from that a table of starting indices for each length in the
|
97
|
+
sorted table, and then entering the symbols in order in the sorted
|
98
|
+
table. The sorted table is work[], with that space being provided by
|
99
|
+
the caller.
|
100
|
+
|
101
|
+
The length counts are used for other purposes as well, i.e. finding
|
102
|
+
the minimum and maximum length codes, determining if there are any
|
103
|
+
codes at all, checking for a valid set of lengths, and looking ahead
|
104
|
+
at length counts to determine sub-table sizes when building the
|
105
|
+
decoding tables.
|
106
|
+
*/
|
107
|
+
|
108
|
+
/* accumulate lengths for codes (assumes lens[] all in 0..MAXBITS) */
|
109
|
+
for (len = 0; len <= MAXBITS; len++)
|
110
|
+
count[len] = 0;
|
111
|
+
for (sym = 0; sym < codes; sym++)
|
112
|
+
count[lens[sym]]++;
|
113
|
+
|
114
|
+
/* bound code lengths, force root to be within code lengths */
|
115
|
+
root = *bits;
|
116
|
+
for (max = MAXBITS; max >= 1; max--)
|
117
|
+
if (count[max] != 0) break;
|
118
|
+
if (root > max) root = max;
|
119
|
+
if (max == 0) return -1; /* no codes! */
|
120
|
+
for (min = 1; min <= MAXBITS; min++)
|
121
|
+
if (count[min] != 0) break;
|
122
|
+
if (root < min) root = min;
|
123
|
+
|
124
|
+
/* check for an over-subscribed or incomplete set of lengths */
|
125
|
+
left = 1;
|
126
|
+
for (len = 1; len <= MAXBITS; len++) {
|
127
|
+
left <<= 1;
|
128
|
+
left -= count[len];
|
129
|
+
if (left < 0) return -1; /* over-subscribed */
|
130
|
+
}
|
131
|
+
if (left > 0 && (type == CODES || max != 1))
|
132
|
+
return -1; /* incomplete set */
|
133
|
+
|
134
|
+
/* generate offsets into symbol table for each length for sorting */
|
135
|
+
offs[1] = 0;
|
136
|
+
for (len = 1; len < MAXBITS; len++)
|
137
|
+
offs[len + 1] = offs[len] + count[len];
|
138
|
+
|
139
|
+
/* sort symbols by length, by symbol order within each length */
|
140
|
+
for (sym = 0; sym < codes; sym++)
|
141
|
+
if (lens[sym] != 0) work[offs[lens[sym]]++] = (unsigned short)sym;
|
142
|
+
|
143
|
+
/*
|
144
|
+
Create and fill in decoding tables. In this loop, the table being
|
145
|
+
filled is at next and has curr index bits. The code being used is huff
|
146
|
+
with length len. That code is converted to an index by dropping drop
|
147
|
+
bits off of the bottom. For codes where len is less than drop + curr,
|
148
|
+
those top drop + curr - len bits are incremented through all values to
|
149
|
+
fill the table with replicated entries.
|
150
|
+
|
151
|
+
root is the number of index bits for the root table. When len exceeds
|
152
|
+
root, sub-tables are created pointed to by the root entry with an index
|
153
|
+
of the low root bits of huff. This is saved in low to check for when a
|
154
|
+
new sub-table should be started. drop is zero when the root table is
|
155
|
+
being filled, and drop is root when sub-tables are being filled.
|
156
|
+
|
157
|
+
When a new sub-table is needed, it is necessary to look ahead in the
|
158
|
+
code lengths to determine what size sub-table is needed. The length
|
159
|
+
counts are used for this, and so count[] is decremented as codes are
|
160
|
+
entered in the tables.
|
161
|
+
|
162
|
+
used keeps track of how many table entries have been allocated from the
|
163
|
+
provided *table space. It is checked when a LENS table is being made
|
164
|
+
against the space in *table, ENOUGH, minus the maximum space needed by
|
165
|
+
the worst case distance code, MAXD. This should never happen, but the
|
166
|
+
sufficiency of ENOUGH has not been proven exhaustively, hence the check.
|
167
|
+
This assumes that when type == LENS, bits == 9.
|
168
|
+
|
169
|
+
sym increments through all symbols, and the loop terminates when
|
170
|
+
all codes of length max, i.e. all codes, have been processed. This
|
171
|
+
routine permits incomplete codes, so another loop after this one fills
|
172
|
+
in the rest of the decoding tables with invalid code markers.
|
173
|
+
*/
|
174
|
+
|
175
|
+
/* set up for code type */
|
176
|
+
switch (type) {
|
177
|
+
case CODES:
|
178
|
+
base = extra = work; /* dummy value--not used */
|
179
|
+
end = 19;
|
180
|
+
break;
|
181
|
+
case LENS:
|
182
|
+
base = lbase;
|
183
|
+
base -= 257;
|
184
|
+
extra = lext;
|
185
|
+
extra -= 257;
|
186
|
+
end = 256;
|
187
|
+
break;
|
188
|
+
default: /* DISTS */
|
189
|
+
base = dbase;
|
190
|
+
extra = dext;
|
191
|
+
end = -1;
|
192
|
+
}
|
193
|
+
|
194
|
+
/* initialize state for loop */
|
195
|
+
huff = 0; /* starting code */
|
196
|
+
sym = 0; /* starting code symbol */
|
197
|
+
len = min; /* starting code length */
|
198
|
+
next = *table; /* current table to fill in */
|
199
|
+
curr = root; /* current table index bits */
|
200
|
+
drop = 0; /* current bits to drop from code for index */
|
201
|
+
low = (unsigned)(-1); /* trigger new sub-table when len > root */
|
202
|
+
used = 1U << root; /* use root table entries */
|
203
|
+
mask = used - 1; /* mask for comparing low */
|
204
|
+
|
205
|
+
/* check available table space */
|
206
|
+
if (type == LENS && used >= ENOUGH - MAXD)
|
207
|
+
return 1;
|
208
|
+
|
209
|
+
/* process all codes and make table entries */
|
210
|
+
for (;;) {
|
211
|
+
/* create table entry */
|
212
|
+
this.bits = (unsigned char)(len - drop);
|
213
|
+
if ((int)(work[sym]) < end) {
|
214
|
+
this.op = (unsigned char)0;
|
215
|
+
this.val = work[sym];
|
216
|
+
}
|
217
|
+
else if ((int)(work[sym]) > end) {
|
218
|
+
this.op = (unsigned char)(extra[work[sym]]);
|
219
|
+
this.val = base[work[sym]];
|
220
|
+
}
|
221
|
+
else {
|
222
|
+
this.op = (unsigned char)(32 + 64); /* end of block */
|
223
|
+
this.val = 0;
|
224
|
+
}
|
225
|
+
|
226
|
+
/* replicate for those indices with low len bits equal to huff */
|
227
|
+
incr = 1U << (len - drop);
|
228
|
+
fill = 1U << curr;
|
229
|
+
do {
|
230
|
+
fill -= incr;
|
231
|
+
next[(huff >> drop) + fill] = this;
|
232
|
+
} while (fill != 0);
|
233
|
+
|
234
|
+
/* backwards increment the len-bit code huff */
|
235
|
+
incr = 1U << (len - 1);
|
236
|
+
while (huff & incr)
|
237
|
+
incr >>= 1;
|
238
|
+
if (incr != 0) {
|
239
|
+
huff &= incr - 1;
|
240
|
+
huff += incr;
|
241
|
+
}
|
242
|
+
else
|
243
|
+
huff = 0;
|
244
|
+
|
245
|
+
/* go to next symbol, update count, len */
|
246
|
+
sym++;
|
247
|
+
if (--(count[len]) == 0) {
|
248
|
+
if (len == max) break;
|
249
|
+
len = lens[work[sym]];
|
250
|
+
}
|
251
|
+
|
252
|
+
/* create new sub-table if needed */
|
253
|
+
if (len > root && (huff & mask) != low) {
|
254
|
+
/* if first time, transition to sub-tables */
|
255
|
+
if (drop == 0)
|
256
|
+
drop = root;
|
257
|
+
|
258
|
+
/* increment past last table */
|
259
|
+
next += 1U << curr;
|
260
|
+
|
261
|
+
/* determine length of next table */
|
262
|
+
curr = len - drop;
|
263
|
+
left = (int)(1 << curr);
|
264
|
+
while (curr + drop < max) {
|
265
|
+
left -= count[curr + drop];
|
266
|
+
if (left <= 0) break;
|
267
|
+
curr++;
|
268
|
+
left <<= 1;
|
269
|
+
}
|
270
|
+
|
271
|
+
/* check for enough space */
|
272
|
+
used += 1U << curr;
|
273
|
+
if (type == LENS && used >= ENOUGH - MAXD)
|
274
|
+
return 1;
|
275
|
+
|
276
|
+
/* point entry in root table to sub-table */
|
277
|
+
low = huff & mask;
|
278
|
+
(*table)[low].op = (unsigned char)curr;
|
279
|
+
(*table)[low].bits = (unsigned char)root;
|
280
|
+
(*table)[low].val = (unsigned short)(next - *table);
|
281
|
+
}
|
282
|
+
}
|
283
|
+
|
284
|
+
/*
|
285
|
+
Fill in rest of table for incomplete codes. This loop is similar to the
|
286
|
+
loop above in incrementing huff for table indices. It is assumed that
|
287
|
+
len is equal to curr + drop, so there is no loop needed to increment
|
288
|
+
through high index bits. When the current sub-table is filled, the loop
|
289
|
+
drops back to the root table to fill in any remaining entries there.
|
290
|
+
*/
|
291
|
+
this.op = (unsigned char)64; /* invalid code marker */
|
292
|
+
this.bits = (unsigned char)(len - drop);
|
293
|
+
this.val = (unsigned short)0;
|
294
|
+
while (huff != 0) {
|
295
|
+
/* when done with sub-table, drop back to root table */
|
296
|
+
if (drop != 0 && (huff & mask) != low) {
|
297
|
+
drop = 0;
|
298
|
+
len = root;
|
299
|
+
next = *table;
|
300
|
+
curr = root;
|
301
|
+
this.bits = (unsigned char)len;
|
302
|
+
}
|
303
|
+
|
304
|
+
/* put invalid code marker in table */
|
305
|
+
next[huff >> drop] = this;
|
306
|
+
|
307
|
+
/* backwards increment the len-bit code huff */
|
308
|
+
incr = 1U << (len - 1);
|
309
|
+
while (huff & incr)
|
310
|
+
incr >>= 1;
|
311
|
+
if (incr != 0) {
|
312
|
+
huff &= incr - 1;
|
313
|
+
huff += incr;
|
314
|
+
}
|
315
|
+
else
|
316
|
+
huff = 0;
|
317
|
+
}
|
318
|
+
|
319
|
+
/* set return parameters */
|
320
|
+
*table += used;
|
321
|
+
*bits = root;
|
322
|
+
return 0;
|
323
|
+
}
|