bio-velvet_underground 0.0.1
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- checksums.yaml +7 -0
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- data/ext/src/third-party/zlib-1.2.3/uncompr.c +61 -0
- data/ext/src/third-party/zlib-1.2.3/win32/DLL_FAQ.txt +397 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.bor +107 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.emx +69 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.gcc +141 -0
- data/ext/src/third-party/zlib-1.2.3/win32/Makefile.msc +126 -0
- data/ext/src/third-party/zlib-1.2.3/win32/VisualC.txt +3 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib.def +60 -0
- data/ext/src/third-party/zlib-1.2.3/win32/zlib1.rc +39 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zconf.in.h +332 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.3 +159 -0
- data/ext/src/third-party/zlib-1.2.3/zlib.h +1357 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.c +318 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.h +269 -0
- data/lib/bio-velvet_underground.rb +12 -0
- data/lib/bio-velvet_underground/external/VERSION +1 -0
- data/lib/bio-velvet_underground/velvet_underground.rb +72 -0
- data/spec/binary_sequence_store_spec.rb +27 -0
- data/spec/data/1/CnyUnifiedSeq +0 -0
- data/spec/spec_helper.rb +31 -0
- metadata +456 -0
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* ZLIB.INC - Interface to the general purpose compression library
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*
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* ILE RPG400 version by Patrick Monnerat, DATASPHERE.
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* Version 1.2.3
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*
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*
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* WARNING:
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* Procedures inflateInit(), inflateInit2(), deflateInit(),
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* deflateInit2() and inflateBackInit() need to be called with
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* two additional arguments:
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* the package version string and the stream control structure.
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* size. This is needed because RPG lacks some macro feature.
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* Call these procedures as:
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* inflateInit(...: ZLIB_VERSION: %size(z_stream))
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*
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/if not defined(ZLIB_H_)
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/define ZLIB_H_
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*
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**************************************************************************
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* Constants
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**************************************************************************
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*
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* Versioning information.
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*
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D ZLIB_VERSION C '1.2.3'
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D ZLIB_VERNUM C X'1230'
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*
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* Other equates.
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*
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D Z_NO_FLUSH C 0
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D Z_SYNC_FLUSH C 2
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D Z_FULL_FLUSH C 3
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D Z_FINISH C 4
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D Z_BLOCK C 5
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*
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D Z_OK C 0
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D Z_STREAM_END C 1
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D Z_NEED_DICT C 2
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D Z_ERRNO C -1
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D Z_STREAM_ERROR C -2
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D Z_DATA_ERROR C -3
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D Z_MEM_ERROR C -4
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D Z_BUF_ERROR C -5
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DZ_VERSION_ERROR C -6
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*
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D Z_NO_COMPRESSION...
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D C 0
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D Z_BEST_SPEED C 1
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D Z_BEST_COMPRESSION...
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D C 9
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D Z_DEFAULT_COMPRESSION...
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D C -1
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*
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D Z_FILTERED C 1
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D Z_HUFFMAN_ONLY C 2
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D Z_RLE C 3
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D Z_DEFAULT_STRATEGY...
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D C 0
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*
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D Z_BINARY C 0
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D Z_ASCII C 1
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D Z_UNKNOWN C 2
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*
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D Z_DEFLATED C 8
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*
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D Z_NULL C 0
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*
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**************************************************************************
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* Types
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**************************************************************************
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*
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D z_streamp S * Stream struct ptr
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D gzFile S * File pointer
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D z_off_t S 10i 0 Stream offsets
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*
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**************************************************************************
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* Structures
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**************************************************************************
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*
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* The GZIP encode/decode stream support structure.
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*
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D z_stream DS align based(z_streamp)
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D zs_next_in * Next input byte
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D zs_avail_in 10U 0 Byte cnt at next_in
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D zs_total_in 10U 0 Total bytes read
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D zs_next_out * Output buffer ptr
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D zs_avail_out 10U 0 Room left @ next_out
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D zs_total_out 10U 0 Total bytes written
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D zs_msg * Last errmsg or null
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D zs_state * Internal state
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D zs_zalloc * procptr Int. state allocator
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D zs_free * procptr Int. state dealloc.
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D zs_opaque * Private alloc. data
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D zs_data_type 10i 0 ASC/BIN best guess
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D zs_adler 10u 0 Uncompr. adler32 val
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D 10U 0 Reserved
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D 10U 0 Ptr. alignment
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*
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**************************************************************************
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* Utility function prototypes
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**************************************************************************
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*
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D compress PR 10I 0 extproc('compress')
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D dest 32767 options(*varsize) Destination buffer
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D destLen 10U 0 Destination length
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D source 32767 const options(*varsize) Source buffer
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D sourceLen 10u 0 value Source length
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*
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D compress2 PR 10I 0 extproc('compress2')
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D dest 32767 options(*varsize) Destination buffer
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D destLen 10U 0 Destination length
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D source 32767 const options(*varsize) Source buffer
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D sourceLen 10U 0 value Source length
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D level 10I 0 value Compression level
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*
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D compressBound PR 10U 0 extproc('compressBound')
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D sourceLen 10U 0 value
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*
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D uncompress PR 10I 0 extproc('uncompress')
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D dest 32767 options(*varsize) Destination buffer
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D destLen 10U 0 Destination length
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D source 32767 const options(*varsize) Source buffer
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D sourceLen 10U 0 value Source length
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*
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D gzopen PR extproc('gzopen')
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D like(gzFile)
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D path * value options(*string) File pathname
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D mode * value options(*string) Open mode
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*
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D gzdopen PR extproc('gzdopen')
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D like(gzFile)
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D fd 10i 0 value File descriptor
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D mode * value options(*string) Open mode
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*
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D gzsetparams PR 10I 0 extproc('gzsetparams')
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D file value like(gzFile) File pointer
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D level 10I 0 value
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D strategy 10i 0 value
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*
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D gzread PR 10I 0 extproc('gzread')
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D file value like(gzFile) File pointer
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D buf 32767 options(*varsize) Buffer
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D len 10u 0 value Buffer length
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*
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D gzwrite PR 10I 0 extproc('gzwrite')
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D file value like(gzFile) File pointer
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D buf 32767 const options(*varsize) Buffer
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D len 10u 0 value Buffer length
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*
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D gzputs PR 10I 0 extproc('gzputs')
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D file value like(gzFile) File pointer
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D s * value options(*string) String to output
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*
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D gzgets PR * extproc('gzgets')
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D file value like(gzFile) File pointer
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D buf 32767 options(*varsize) Read buffer
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D len 10i 0 value Buffer length
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*
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D gzflush PR 10i 0 extproc('gzflush')
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D file value like(gzFile) File pointer
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D flush 10I 0 value Type of flush
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*
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D gzseek PR extproc('gzseek')
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D like(z_off_t)
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D file value like(gzFile) File pointer
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D offset value like(z_off_t) Offset
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D whence 10i 0 value Origin
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*
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D gzrewind PR 10i 0 extproc('gzrewind')
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D file value like(gzFile) File pointer
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*
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D gztell PR extproc('gztell')
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D like(z_off_t)
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D file value like(gzFile) File pointer
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*
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D gzeof PR 10i 0 extproc('gzeof')
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D file value like(gzFile) File pointer
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*
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D gzclose PR 10i 0 extproc('gzclose')
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D file value like(gzFile) File pointer
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*
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D gzerror PR * extproc('gzerror') Error string
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D file value like(gzFile) File pointer
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D errnum 10I 0 Error code
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*
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D gzclearerr PR extproc('gzclearerr')
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D file value like(gzFile) File pointer
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*
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**************************************************************************
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* Basic function prototypes
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**************************************************************************
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*
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D zlibVersion PR * extproc('zlibVersion') Version string
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*
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D deflateInit PR 10I 0 extproc('deflateInit_') Init. compression
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D strm like(z_stream) Compression stream
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D level 10I 0 value Compression level
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D version * value options(*string) Version string
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D stream_size 10i 0 value Stream struct. size
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*
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D deflate PR 10I 0 extproc('deflate') Compress data
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D strm like(z_stream) Compression stream
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D flush 10I 0 value Flush type required
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*
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D deflateEnd PR 10I 0 extproc('deflateEnd') Termin. compression
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D strm like(z_stream) Compression stream
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*
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D inflateInit PR 10I 0 extproc('inflateInit_') Init. expansion
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D strm like(z_stream) Expansion stream
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D version * value options(*string) Version string
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D stream_size 10i 0 value Stream struct. size
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*
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D inflate PR 10I 0 extproc('inflate') Expand data
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D strm like(z_stream) Expansion stream
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D flush 10I 0 value Flush type required
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*
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D inflateEnd PR 10I 0 extproc('inflateEnd') Termin. expansion
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D strm like(z_stream) Expansion stream
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*
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**************************************************************************
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* Advanced function prototypes
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**************************************************************************
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*
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D deflateInit2 PR 10I 0 extproc('deflateInit2_') Init. compression
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D strm like(z_stream) Compression stream
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D level 10I 0 value Compression level
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D method 10I 0 value Compression method
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D windowBits 10I 0 value log2(window size)
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D memLevel 10I 0 value Mem/cmpress tradeoff
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D strategy 10I 0 value Compression stategy
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D version * value options(*string) Version string
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D stream_size 10i 0 value Stream struct. size
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*
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D deflateSetDictionary...
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D PR 10I 0 extproc('deflateSetDictionary') Init. dictionary
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D strm like(z_stream) Compression stream
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D dictionary 32767 const options(*varsize) Dictionary bytes
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D dictLength 10U 0 value Dictionary length
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*
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D deflateCopy PR 10I 0 extproc('deflateCopy') Compress strm 2 strm
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D dest like(z_stream) Destination stream
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D source like(z_stream) Source stream
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*
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D deflateReset PR 10I 0 extproc('deflateReset') End and init. stream
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D strm like(z_stream) Compression stream
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*
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D deflateParams PR 10I 0 extproc('deflateParams') Change level & strat
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D strm like(z_stream) Compression stream
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D level 10I 0 value Compression level
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D strategy 10I 0 value Compression stategy
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*
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D deflateBound PR 10U 0 extproc('deflateBound') Change level & strat
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D strm like(z_stream) Compression stream
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D sourcelen 10U 0 value Compression level
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*
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D deflatePrime PR 10I 0 extproc('deflatePrime') Change level & strat
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D strm like(z_stream) Compression stream
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D bits 10I 0 value Number of bits to insert
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D value 10I 0 value Bits to insert
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*
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D inflateInit2 PR 10I 0 extproc('inflateInit2_') Init. expansion
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D strm like(z_stream) Expansion stream
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D windowBits 10I 0 value log2(window size)
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D version * value options(*string) Version string
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D stream_size 10i 0 value Stream struct. size
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*
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D inflateSetDictionary...
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D PR 10I 0 extproc('inflateSetDictionary') Init. dictionary
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D strm like(z_stream) Expansion stream
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D dictionary 32767 const options(*varsize) Dictionary bytes
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D dictLength 10U 0 value Dictionary length
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*
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D inflateSync PR 10I 0 extproc('inflateSync') Sync. expansion
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D strm like(z_stream) Expansion stream
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*
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D inflateCopy PR 10I 0 extproc('inflateCopy')
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D dest like(z_stream) Destination stream
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D source like(z_stream) Source stream
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*
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D inflateReset PR 10I 0 extproc('inflateReset') End and init. stream
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D strm like(z_stream) Expansion stream
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*
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D inflateBackInit...
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D PR 10I 0 extproc('inflateBackInit_')
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D strm like(z_stream) Expansion stream
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D windowBits 10I 0 value Log2(buffer size)
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D window 32767 options(*varsize) Buffer
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D version * value options(*string) Version string
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D stream_size 10i 0 value Stream struct. size
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*
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D inflateBack PR 10I 0 extproc('inflateBack')
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D strm like(z_stream) Expansion stream
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D in * value procptr Input function
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D in_desc * value Input descriptor
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D out * value procptr Output function
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D out_desc * value Output descriptor
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*
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D inflateBackEnd PR 10I 0 extproc('inflateBackEnd')
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D strm like(z_stream) Expansion stream
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*
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D zlibCompileFlags...
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D PR 10U 0 extproc('zlibCompileFlags')
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*
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**************************************************************************
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* Checksum function prototypes
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**************************************************************************
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*
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D adler32 PR 10U 0 extproc('adler32') New checksum
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D adler 10U 0 value Old checksum
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D buf 32767 const options(*varsize) Bytes to accumulate
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D len 10U 0 value Buffer length
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*
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D crc32 PR 10U 0 extproc('crc32') New checksum
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D crc 10U 0 value Old checksum
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D buf 32767 const options(*varsize) Bytes to accumulate
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D len 10U 0 value Buffer length
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*
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**************************************************************************
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* Miscellaneous function prototypes
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**************************************************************************
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*
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D zError PR * extproc('zError') Error string
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D err 10I 0 value Error code
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*
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D inflateSyncPoint...
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D PR 10I 0 extproc('inflateSyncPoint')
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D strm like(z_stream) Expansion stream
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*
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D get_crc_table PR * extproc('get_crc_table') Ptr to ulongs
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*
|
331
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/endif
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@@ -0,0 +1,79 @@
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1
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/* compress.c -- compress a memory buffer
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* Copyright (C) 1995-2003 Jean-loup Gailly.
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* For conditions of distribution and use, see copyright notice in zlib.h
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*/
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/* @(#) $Id$ */
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|
8
|
+
#define ZLIB_INTERNAL
|
9
|
+
#include "zlib.h"
|
10
|
+
|
11
|
+
/* ===========================================================================
|
12
|
+
Compresses the source buffer into the destination buffer. The level
|
13
|
+
parameter has the same meaning as in deflateInit. sourceLen is the byte
|
14
|
+
length of the source buffer. Upon entry, destLen is the total size of the
|
15
|
+
destination buffer, which must be at least 0.1% larger than sourceLen plus
|
16
|
+
12 bytes. Upon exit, destLen is the actual size of the compressed buffer.
|
17
|
+
|
18
|
+
compress2 returns Z_OK if success, Z_MEM_ERROR if there was not enough
|
19
|
+
memory, Z_BUF_ERROR if there was not enough room in the output buffer,
|
20
|
+
Z_STREAM_ERROR if the level parameter is invalid.
|
21
|
+
*/
|
22
|
+
int ZEXPORT compress2 (dest, destLen, source, sourceLen, level)
|
23
|
+
Bytef *dest;
|
24
|
+
uLongf *destLen;
|
25
|
+
const Bytef *source;
|
26
|
+
uLong sourceLen;
|
27
|
+
int level;
|
28
|
+
{
|
29
|
+
z_stream stream;
|
30
|
+
int err;
|
31
|
+
|
32
|
+
stream.next_in = (Bytef*)source;
|
33
|
+
stream.avail_in = (uInt)sourceLen;
|
34
|
+
#ifdef MAXSEG_64K
|
35
|
+
/* Check for source > 64K on 16-bit machine: */
|
36
|
+
if ((uLong)stream.avail_in != sourceLen) return Z_BUF_ERROR;
|
37
|
+
#endif
|
38
|
+
stream.next_out = dest;
|
39
|
+
stream.avail_out = (uInt)*destLen;
|
40
|
+
if ((uLong)stream.avail_out != *destLen) return Z_BUF_ERROR;
|
41
|
+
|
42
|
+
stream.zalloc = (alloc_func)0;
|
43
|
+
stream.zfree = (free_func)0;
|
44
|
+
stream.opaque = (voidpf)0;
|
45
|
+
|
46
|
+
err = deflateInit(&stream, level);
|
47
|
+
if (err != Z_OK) return err;
|
48
|
+
|
49
|
+
err = deflate(&stream, Z_FINISH);
|
50
|
+
if (err != Z_STREAM_END) {
|
51
|
+
deflateEnd(&stream);
|
52
|
+
return err == Z_OK ? Z_BUF_ERROR : err;
|
53
|
+
}
|
54
|
+
*destLen = stream.total_out;
|
55
|
+
|
56
|
+
err = deflateEnd(&stream);
|
57
|
+
return err;
|
58
|
+
}
|
59
|
+
|
60
|
+
/* ===========================================================================
|
61
|
+
*/
|
62
|
+
int ZEXPORT compress (dest, destLen, source, sourceLen)
|
63
|
+
Bytef *dest;
|
64
|
+
uLongf *destLen;
|
65
|
+
const Bytef *source;
|
66
|
+
uLong sourceLen;
|
67
|
+
{
|
68
|
+
return compress2(dest, destLen, source, sourceLen, Z_DEFAULT_COMPRESSION);
|
69
|
+
}
|
70
|
+
|
71
|
+
/* ===========================================================================
|
72
|
+
If the default memLevel or windowBits for deflateInit() is changed, then
|
73
|
+
this function needs to be updated.
|
74
|
+
*/
|
75
|
+
uLong ZEXPORT compressBound (sourceLen)
|
76
|
+
uLong sourceLen;
|
77
|
+
{
|
78
|
+
return sourceLen + (sourceLen >> 12) + (sourceLen >> 14) + 11;
|
79
|
+
}
|
@@ -0,0 +1,459 @@
|
|
1
|
+
#!/bin/sh
|
2
|
+
# configure script for zlib. This script is needed only if
|
3
|
+
# you wish to build a shared library and your system supports them,
|
4
|
+
# of if you need special compiler, flags or install directory.
|
5
|
+
# Otherwise, you can just use directly "make test; make install"
|
6
|
+
#
|
7
|
+
# To create a shared library, use "configure --shared"; by default a static
|
8
|
+
# library is created. If the primitive shared library support provided here
|
9
|
+
# does not work, use ftp://prep.ai.mit.edu/pub/gnu/libtool-*.tar.gz
|
10
|
+
#
|
11
|
+
# To impose specific compiler or flags or install directory, use for example:
|
12
|
+
# prefix=$HOME CC=cc CFLAGS="-O4" ./configure
|
13
|
+
# or for csh/tcsh users:
|
14
|
+
# (setenv prefix $HOME; setenv CC cc; setenv CFLAGS "-O4"; ./configure)
|
15
|
+
# LDSHARED is the command to be used to create a shared library
|
16
|
+
|
17
|
+
# Incorrect settings of CC or CFLAGS may prevent creating a shared library.
|
18
|
+
# If you have problems, try without defining CC and CFLAGS before reporting
|
19
|
+
# an error.
|
20
|
+
|
21
|
+
LIBS=libz.a
|
22
|
+
LDFLAGS="-L. ${LIBS}"
|
23
|
+
VER=`sed -n -e '/VERSION "/s/.*"\(.*\)".*/\1/p' < zlib.h`
|
24
|
+
VER2=`sed -n -e '/VERSION "/s/.*"\([0-9]*\\.[0-9]*\)\\..*/\1/p' < zlib.h`
|
25
|
+
VER1=`sed -n -e '/VERSION "/s/.*"\([0-9]*\)\\..*/\1/p' < zlib.h`
|
26
|
+
AR=${AR-"ar rc"}
|
27
|
+
RANLIB=${RANLIB-"ranlib"}
|
28
|
+
prefix=${prefix-/usr/local}
|
29
|
+
exec_prefix=${exec_prefix-'${prefix}'}
|
30
|
+
libdir=${libdir-'${exec_prefix}/lib'}
|
31
|
+
includedir=${includedir-'${prefix}/include'}
|
32
|
+
mandir=${mandir-'${prefix}/share/man'}
|
33
|
+
shared_ext='.so'
|
34
|
+
shared=0
|
35
|
+
gcc=0
|
36
|
+
old_cc="$CC"
|
37
|
+
old_cflags="$CFLAGS"
|
38
|
+
|
39
|
+
while test $# -ge 1
|
40
|
+
do
|
41
|
+
case "$1" in
|
42
|
+
-h* | --h*)
|
43
|
+
echo 'usage:'
|
44
|
+
echo ' configure [--shared] [--prefix=PREFIX] [--exec_prefix=EXPREFIX]'
|
45
|
+
echo ' [--libdir=LIBDIR] [--includedir=INCLUDEDIR]'
|
46
|
+
exit 0;;
|
47
|
+
-p*=* | --p*=*) prefix=`echo $1 | sed 's/[-a-z_]*=//'`; shift;;
|
48
|
+
-e*=* | --e*=*) exec_prefix=`echo $1 | sed 's/[-a-z_]*=//'`; shift;;
|
49
|
+
-l*=* | --libdir=*) libdir=`echo $1 | sed 's/[-a-z_]*=//'`; shift;;
|
50
|
+
-i*=* | --includedir=*) includedir=`echo $1 | sed 's/[-a-z_]*=//'`;shift;;
|
51
|
+
-p* | --p*) prefix="$2"; shift; shift;;
|
52
|
+
-e* | --e*) exec_prefix="$2"; shift; shift;;
|
53
|
+
-l* | --l*) libdir="$2"; shift; shift;;
|
54
|
+
-i* | --i*) includedir="$2"; shift; shift;;
|
55
|
+
-s* | --s*) shared=1; shift;;
|
56
|
+
*) echo "unknown option: $1"; echo "$0 --help for help"; exit 1;;
|
57
|
+
esac
|
58
|
+
done
|
59
|
+
|
60
|
+
test=ztest$$
|
61
|
+
cat > $test.c <<EOF
|
62
|
+
extern int getchar();
|
63
|
+
int hello() {return getchar();}
|
64
|
+
EOF
|
65
|
+
|
66
|
+
test -z "$CC" && echo Checking for gcc...
|
67
|
+
cc=${CC-gcc}
|
68
|
+
cflags=${CFLAGS-"-O3"}
|
69
|
+
# to force the asm version use: CFLAGS="-O3 -DASMV" ./configure
|
70
|
+
case "$cc" in
|
71
|
+
*gcc*) gcc=1;;
|
72
|
+
esac
|
73
|
+
|
74
|
+
if test "$gcc" -eq 1 && ($cc -c $cflags $test.c) 2>/dev/null; then
|
75
|
+
CC="$cc"
|
76
|
+
SFLAGS=${CFLAGS-"-fPIC -O3"}
|
77
|
+
CFLAGS="$cflags"
|
78
|
+
case `(uname -s || echo unknown) 2>/dev/null` in
|
79
|
+
Linux | linux | GNU | GNU/*) LDSHARED=${LDSHARED-"$cc -shared -Wl,-soname,libz.so.1"};;
|
80
|
+
CYGWIN* | Cygwin* | cygwin* | OS/2* )
|
81
|
+
EXE='.exe';;
|
82
|
+
QNX*) # This is for QNX6. I suppose that the QNX rule below is for QNX2,QNX4
|
83
|
+
# (alain.bonnefoy@icbt.com)
|
84
|
+
LDSHARED=${LDSHARED-"$cc -shared -Wl,-hlibz.so.1"};;
|
85
|
+
HP-UX*)
|
86
|
+
LDSHARED=${LDSHARED-"$cc -shared $SFLAGS"}
|
87
|
+
case `(uname -m || echo unknown) 2>/dev/null` in
|
88
|
+
ia64)
|
89
|
+
shared_ext='.so'
|
90
|
+
SHAREDLIB='libz.so';;
|
91
|
+
*)
|
92
|
+
shared_ext='.sl'
|
93
|
+
SHAREDLIB='libz.sl';;
|
94
|
+
esac;;
|
95
|
+
Darwin*) shared_ext='.dylib'
|
96
|
+
SHAREDLIB=libz$shared_ext
|
97
|
+
SHAREDLIBV=libz.$VER$shared_ext
|
98
|
+
SHAREDLIBM=libz.$VER1$shared_ext
|
99
|
+
LDSHARED=${LDSHARED-"$cc -dynamiclib -install_name $libdir/$SHAREDLIBM -compatibility_version $VER1 -current_version $VER"};;
|
100
|
+
*) LDSHARED=${LDSHARED-"$cc -shared"};;
|
101
|
+
esac
|
102
|
+
else
|
103
|
+
# find system name and corresponding cc options
|
104
|
+
CC=${CC-cc}
|
105
|
+
case `(uname -sr || echo unknown) 2>/dev/null` in
|
106
|
+
HP-UX*) SFLAGS=${CFLAGS-"-O +z"}
|
107
|
+
CFLAGS=${CFLAGS-"-O"}
|
108
|
+
# LDSHARED=${LDSHARED-"ld -b +vnocompatwarnings"}
|
109
|
+
LDSHARED=${LDSHARED-"ld -b"}
|
110
|
+
case `(uname -m || echo unknown) 2>/dev/null` in
|
111
|
+
ia64)
|
112
|
+
shared_ext='.so'
|
113
|
+
SHAREDLIB='libz.so';;
|
114
|
+
*)
|
115
|
+
shared_ext='.sl'
|
116
|
+
SHAREDLIB='libz.sl';;
|
117
|
+
esac;;
|
118
|
+
IRIX*) SFLAGS=${CFLAGS-"-ansi -O2 -rpath ."}
|
119
|
+
CFLAGS=${CFLAGS-"-ansi -O2"}
|
120
|
+
LDSHARED=${LDSHARED-"cc -shared"};;
|
121
|
+
OSF1\ V4*) SFLAGS=${CFLAGS-"-O -std1"}
|
122
|
+
CFLAGS=${CFLAGS-"-O -std1"}
|
123
|
+
LDSHARED=${LDSHARED-"cc -shared -Wl,-soname,libz.so -Wl,-msym -Wl,-rpath,$(libdir) -Wl,-set_version,${VER}:1.0"};;
|
124
|
+
OSF1*) SFLAGS=${CFLAGS-"-O -std1"}
|
125
|
+
CFLAGS=${CFLAGS-"-O -std1"}
|
126
|
+
LDSHARED=${LDSHARED-"cc -shared"};;
|
127
|
+
QNX*) SFLAGS=${CFLAGS-"-4 -O"}
|
128
|
+
CFLAGS=${CFLAGS-"-4 -O"}
|
129
|
+
LDSHARED=${LDSHARED-"cc"}
|
130
|
+
RANLIB=${RANLIB-"true"}
|
131
|
+
AR="cc -A";;
|
132
|
+
SCO_SV\ 3.2*) SFLAGS=${CFLAGS-"-O3 -dy -KPIC "}
|
133
|
+
CFLAGS=${CFLAGS-"-O3"}
|
134
|
+
LDSHARED=${LDSHARED-"cc -dy -KPIC -G"};;
|
135
|
+
SunOS\ 5*) SFLAGS=${CFLAGS-"-fast -xcg89 -KPIC -R."}
|
136
|
+
CFLAGS=${CFLAGS-"-fast -xcg89"}
|
137
|
+
LDSHARED=${LDSHARED-"cc -G"};;
|
138
|
+
SunOS\ 4*) SFLAGS=${CFLAGS-"-O2 -PIC"}
|
139
|
+
CFLAGS=${CFLAGS-"-O2"}
|
140
|
+
LDSHARED=${LDSHARED-"ld"};;
|
141
|
+
SunStudio\ 9*) SFLAGS=${CFLAGS-"-DUSE_MMAP -fast -xcode=pic32 -xtarget=ultra3 -xarch=v9b"}
|
142
|
+
CFLAGS=${CFLAGS-"-DUSE_MMAP -fast -xtarget=ultra3 -xarch=v9b"}
|
143
|
+
LDSHARED=${LDSHARED-"cc -xarch=v9b"};;
|
144
|
+
UNIX_System_V\ 4.2.0)
|
145
|
+
SFLAGS=${CFLAGS-"-KPIC -O"}
|
146
|
+
CFLAGS=${CFLAGS-"-O"}
|
147
|
+
LDSHARED=${LDSHARED-"cc -G"};;
|
148
|
+
UNIX_SV\ 4.2MP)
|
149
|
+
SFLAGS=${CFLAGS-"-Kconform_pic -O"}
|
150
|
+
CFLAGS=${CFLAGS-"-O"}
|
151
|
+
LDSHARED=${LDSHARED-"cc -G"};;
|
152
|
+
OpenUNIX\ 5)
|
153
|
+
SFLAGS=${CFLAGS-"-KPIC -O"}
|
154
|
+
CFLAGS=${CFLAGS-"-O"}
|
155
|
+
LDSHARED=${LDSHARED-"cc -G"};;
|
156
|
+
AIX*) # Courtesy of dbakker@arrayasolutions.com
|
157
|
+
SFLAGS=${CFLAGS-"-O -qmaxmem=8192"}
|
158
|
+
CFLAGS=${CFLAGS-"-O -qmaxmem=8192"}
|
159
|
+
LDSHARED=${LDSHARED-"xlc -G"};;
|
160
|
+
# send working options for other systems to support@gzip.org
|
161
|
+
*) SFLAGS=${CFLAGS-"-O"}
|
162
|
+
CFLAGS=${CFLAGS-"-O"}
|
163
|
+
LDSHARED=${LDSHARED-"cc -shared"};;
|
164
|
+
esac
|
165
|
+
fi
|
166
|
+
|
167
|
+
SHAREDLIB=${SHAREDLIB-"libz$shared_ext"}
|
168
|
+
SHAREDLIBV=${SHAREDLIBV-"libz$shared_ext.$VER"}
|
169
|
+
SHAREDLIBM=${SHAREDLIBM-"libz$shared_ext.$VER1"}
|
170
|
+
|
171
|
+
if test $shared -eq 1; then
|
172
|
+
echo Checking for shared library support...
|
173
|
+
# we must test in two steps (cc then ld), required at least on SunOS 4.x
|
174
|
+
if test "`($CC -c $SFLAGS $test.c) 2>&1`" = "" &&
|
175
|
+
test "`($LDSHARED -o $test$shared_ext $test.o) 2>&1`" = ""; then
|
176
|
+
CFLAGS="$SFLAGS"
|
177
|
+
LIBS="$SHAREDLIBV"
|
178
|
+
echo Building shared library $SHAREDLIBV with $CC.
|
179
|
+
elif test -z "$old_cc" -a -z "$old_cflags"; then
|
180
|
+
echo No shared library support.
|
181
|
+
shared=0;
|
182
|
+
else
|
183
|
+
echo 'No shared library support; try without defining CC and CFLAGS'
|
184
|
+
shared=0;
|
185
|
+
fi
|
186
|
+
fi
|
187
|
+
if test $shared -eq 0; then
|
188
|
+
LDSHARED="$CC"
|
189
|
+
echo Building static library $LIBS version $VER with $CC.
|
190
|
+
else
|
191
|
+
LDFLAGS="-L. ${SHAREDLIBV}"
|
192
|
+
fi
|
193
|
+
|
194
|
+
cat > $test.c <<EOF
|
195
|
+
#include <unistd.h>
|
196
|
+
int main() { return 0; }
|
197
|
+
EOF
|
198
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
199
|
+
sed < zconf.in.h "/HAVE_UNISTD_H/s%0%1%" > zconf.h
|
200
|
+
echo "Checking for unistd.h... Yes."
|
201
|
+
else
|
202
|
+
cp -p zconf.in.h zconf.h
|
203
|
+
echo "Checking for unistd.h... No."
|
204
|
+
fi
|
205
|
+
|
206
|
+
cat > $test.c <<EOF
|
207
|
+
#include <stdio.h>
|
208
|
+
#include <stdarg.h>
|
209
|
+
#include "zconf.h"
|
210
|
+
|
211
|
+
int main()
|
212
|
+
{
|
213
|
+
#ifndef STDC
|
214
|
+
choke me
|
215
|
+
#endif
|
216
|
+
|
217
|
+
return 0;
|
218
|
+
}
|
219
|
+
EOF
|
220
|
+
|
221
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
222
|
+
echo "Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf()"
|
223
|
+
|
224
|
+
cat > $test.c <<EOF
|
225
|
+
#include <stdio.h>
|
226
|
+
#include <stdarg.h>
|
227
|
+
|
228
|
+
int mytest(char *fmt, ...)
|
229
|
+
{
|
230
|
+
char buf[20];
|
231
|
+
va_list ap;
|
232
|
+
|
233
|
+
va_start(ap, fmt);
|
234
|
+
vsnprintf(buf, sizeof(buf), fmt, ap);
|
235
|
+
va_end(ap);
|
236
|
+
return 0;
|
237
|
+
}
|
238
|
+
|
239
|
+
int main()
|
240
|
+
{
|
241
|
+
return (mytest("Hello%d\n", 1));
|
242
|
+
}
|
243
|
+
EOF
|
244
|
+
|
245
|
+
if test "`($CC $CFLAGS -o $test $test.c) 2>&1`" = ""; then
|
246
|
+
echo "Checking for vsnprintf() in stdio.h... Yes."
|
247
|
+
|
248
|
+
cat >$test.c <<EOF
|
249
|
+
#include <stdio.h>
|
250
|
+
#include <stdarg.h>
|
251
|
+
|
252
|
+
int mytest(char *fmt, ...)
|
253
|
+
{
|
254
|
+
int n;
|
255
|
+
char buf[20];
|
256
|
+
va_list ap;
|
257
|
+
|
258
|
+
va_start(ap, fmt);
|
259
|
+
n = vsnprintf(buf, sizeof(buf), fmt, ap);
|
260
|
+
va_end(ap);
|
261
|
+
return n;
|
262
|
+
}
|
263
|
+
|
264
|
+
int main()
|
265
|
+
{
|
266
|
+
return (mytest("Hello%d\n", 1));
|
267
|
+
}
|
268
|
+
EOF
|
269
|
+
|
270
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
271
|
+
echo "Checking for return value of vsnprintf()... Yes."
|
272
|
+
else
|
273
|
+
CFLAGS="$CFLAGS -DHAS_vsnprintf_void"
|
274
|
+
echo "Checking for return value of vsnprintf()... No."
|
275
|
+
echo " WARNING: apparently vsnprintf() does not return a value. zlib"
|
276
|
+
echo " can build but will be open to possible string-format security"
|
277
|
+
echo " vulnerabilities."
|
278
|
+
fi
|
279
|
+
else
|
280
|
+
CFLAGS="$CFLAGS -DNO_vsnprintf"
|
281
|
+
echo "Checking for vsnprintf() in stdio.h... No."
|
282
|
+
echo " WARNING: vsnprintf() not found, falling back to vsprintf(). zlib"
|
283
|
+
echo " can build but will be open to possible buffer-overflow security"
|
284
|
+
echo " vulnerabilities."
|
285
|
+
|
286
|
+
cat >$test.c <<EOF
|
287
|
+
#include <stdio.h>
|
288
|
+
#include <stdarg.h>
|
289
|
+
|
290
|
+
int mytest(char *fmt, ...)
|
291
|
+
{
|
292
|
+
int n;
|
293
|
+
char buf[20];
|
294
|
+
va_list ap;
|
295
|
+
|
296
|
+
va_start(ap, fmt);
|
297
|
+
n = vsprintf(buf, fmt, ap);
|
298
|
+
va_end(ap);
|
299
|
+
return n;
|
300
|
+
}
|
301
|
+
|
302
|
+
int main()
|
303
|
+
{
|
304
|
+
return (mytest("Hello%d\n", 1));
|
305
|
+
}
|
306
|
+
EOF
|
307
|
+
|
308
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
309
|
+
echo "Checking for return value of vsprintf()... Yes."
|
310
|
+
else
|
311
|
+
CFLAGS="$CFLAGS -DHAS_vsprintf_void"
|
312
|
+
echo "Checking for return value of vsprintf()... No."
|
313
|
+
echo " WARNING: apparently vsprintf() does not return a value. zlib"
|
314
|
+
echo " can build but will be open to possible string-format security"
|
315
|
+
echo " vulnerabilities."
|
316
|
+
fi
|
317
|
+
fi
|
318
|
+
else
|
319
|
+
echo "Checking whether to use vs[n]printf() or s[n]printf()... using s[n]printf()"
|
320
|
+
|
321
|
+
cat >$test.c <<EOF
|
322
|
+
#include <stdio.h>
|
323
|
+
|
324
|
+
int mytest()
|
325
|
+
{
|
326
|
+
char buf[20];
|
327
|
+
|
328
|
+
snprintf(buf, sizeof(buf), "%s", "foo");
|
329
|
+
return 0;
|
330
|
+
}
|
331
|
+
|
332
|
+
int main()
|
333
|
+
{
|
334
|
+
return (mytest());
|
335
|
+
}
|
336
|
+
EOF
|
337
|
+
|
338
|
+
if test "`($CC $CFLAGS -o $test $test.c) 2>&1`" = ""; then
|
339
|
+
echo "Checking for snprintf() in stdio.h... Yes."
|
340
|
+
|
341
|
+
cat >$test.c <<EOF
|
342
|
+
#include <stdio.h>
|
343
|
+
|
344
|
+
int mytest()
|
345
|
+
{
|
346
|
+
char buf[20];
|
347
|
+
|
348
|
+
return snprintf(buf, sizeof(buf), "%s", "foo");
|
349
|
+
}
|
350
|
+
|
351
|
+
int main()
|
352
|
+
{
|
353
|
+
return (mytest());
|
354
|
+
}
|
355
|
+
EOF
|
356
|
+
|
357
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
358
|
+
echo "Checking for return value of snprintf()... Yes."
|
359
|
+
else
|
360
|
+
CFLAGS="$CFLAGS -DHAS_snprintf_void"
|
361
|
+
echo "Checking for return value of snprintf()... No."
|
362
|
+
echo " WARNING: apparently snprintf() does not return a value. zlib"
|
363
|
+
echo " can build but will be open to possible string-format security"
|
364
|
+
echo " vulnerabilities."
|
365
|
+
fi
|
366
|
+
else
|
367
|
+
CFLAGS="$CFLAGS -DNO_snprintf"
|
368
|
+
echo "Checking for snprintf() in stdio.h... No."
|
369
|
+
echo " WARNING: snprintf() not found, falling back to sprintf(). zlib"
|
370
|
+
echo " can build but will be open to possible buffer-overflow security"
|
371
|
+
echo " vulnerabilities."
|
372
|
+
|
373
|
+
cat >$test.c <<EOF
|
374
|
+
#include <stdio.h>
|
375
|
+
|
376
|
+
int mytest()
|
377
|
+
{
|
378
|
+
char buf[20];
|
379
|
+
|
380
|
+
return sprintf(buf, "%s", "foo");
|
381
|
+
}
|
382
|
+
|
383
|
+
int main()
|
384
|
+
{
|
385
|
+
return (mytest());
|
386
|
+
}
|
387
|
+
EOF
|
388
|
+
|
389
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
390
|
+
echo "Checking for return value of sprintf()... Yes."
|
391
|
+
else
|
392
|
+
CFLAGS="$CFLAGS -DHAS_sprintf_void"
|
393
|
+
echo "Checking for return value of sprintf()... No."
|
394
|
+
echo " WARNING: apparently sprintf() does not return a value. zlib"
|
395
|
+
echo " can build but will be open to possible string-format security"
|
396
|
+
echo " vulnerabilities."
|
397
|
+
fi
|
398
|
+
fi
|
399
|
+
fi
|
400
|
+
|
401
|
+
cat >$test.c <<EOF
|
402
|
+
#include <errno.h>
|
403
|
+
int main() { return 0; }
|
404
|
+
EOF
|
405
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
406
|
+
echo "Checking for errno.h... Yes."
|
407
|
+
else
|
408
|
+
echo "Checking for errno.h... No."
|
409
|
+
CFLAGS="$CFLAGS -DNO_ERRNO_H"
|
410
|
+
fi
|
411
|
+
|
412
|
+
cat > $test.c <<EOF
|
413
|
+
#include <sys/types.h>
|
414
|
+
#include <sys/mman.h>
|
415
|
+
#include <sys/stat.h>
|
416
|
+
caddr_t hello() {
|
417
|
+
return mmap((caddr_t)0, (off_t)0, PROT_READ, MAP_SHARED, 0, (off_t)0);
|
418
|
+
}
|
419
|
+
EOF
|
420
|
+
if test "`($CC -c $CFLAGS $test.c) 2>&1`" = ""; then
|
421
|
+
CFLAGS="$CFLAGS -DUSE_MMAP"
|
422
|
+
echo Checking for mmap support... Yes.
|
423
|
+
else
|
424
|
+
echo Checking for mmap support... No.
|
425
|
+
fi
|
426
|
+
|
427
|
+
CPP=${CPP-"$CC -E"}
|
428
|
+
case $CFLAGS in
|
429
|
+
*ASMV*)
|
430
|
+
if test "`nm $test.o | grep _hello`" = ""; then
|
431
|
+
CPP="$CPP -DNO_UNDERLINE"
|
432
|
+
echo Checking for underline in external names... No.
|
433
|
+
else
|
434
|
+
echo Checking for underline in external names... Yes.
|
435
|
+
fi;;
|
436
|
+
esac
|
437
|
+
|
438
|
+
rm -f $test.[co] $test $test$shared_ext
|
439
|
+
|
440
|
+
# udpate Makefile
|
441
|
+
sed < Makefile.in "
|
442
|
+
/^CC *=/s#=.*#=$CC#
|
443
|
+
/^CFLAGS *=/s#=.*#=$CFLAGS#
|
444
|
+
/^CPP *=/s#=.*#=$CPP#
|
445
|
+
/^LDSHARED *=/s#=.*#=$LDSHARED#
|
446
|
+
/^LIBS *=/s#=.*#=$LIBS#
|
447
|
+
/^SHAREDLIB *=/s#=.*#=$SHAREDLIB#
|
448
|
+
/^SHAREDLIBV *=/s#=.*#=$SHAREDLIBV#
|
449
|
+
/^SHAREDLIBM *=/s#=.*#=$SHAREDLIBM#
|
450
|
+
/^AR *=/s#=.*#=$AR#
|
451
|
+
/^RANLIB *=/s#=.*#=$RANLIB#
|
452
|
+
/^EXE *=/s#=.*#=$EXE#
|
453
|
+
/^prefix *=/s#=.*#=$prefix#
|
454
|
+
/^exec_prefix *=/s#=.*#=$exec_prefix#
|
455
|
+
/^libdir *=/s#=.*#=$libdir#
|
456
|
+
/^includedir *=/s#=.*#=$includedir#
|
457
|
+
/^mandir *=/s#=.*#=$mandir#
|
458
|
+
/^LDFLAGS *=/s#=.*#=$LDFLAGS#
|
459
|
+
" > Makefile
|