snappy 3.2__cp311-cp311-macosx_10_12_x86_64.whl

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  1. snappy/CyOpenGL.cpython-311-darwin.so +0 -0
  2. snappy/SnapPy.cpython-311-darwin.so +0 -0
  3. snappy/SnapPy.ico +0 -0
  4. snappy/SnapPy.png +0 -0
  5. snappy/SnapPyHP.cpython-311-darwin.so +0 -0
  6. snappy/__init__.py +760 -0
  7. snappy/app.py +605 -0
  8. snappy/app_menus.py +372 -0
  9. snappy/browser.py +998 -0
  10. snappy/cache.py +25 -0
  11. snappy/canonical.py +249 -0
  12. snappy/cusps/__init__.py +38 -0
  13. snappy/cusps/cusp_area_matrix.py +101 -0
  14. snappy/cusps/cusp_areas_from_matrix.py +173 -0
  15. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  16. snappy/cusps/test.py +21 -0
  17. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  18. snappy/database.py +454 -0
  19. snappy/db_utilities.py +79 -0
  20. snappy/decorated_isosig.py +710 -0
  21. snappy/dev/__init__.py +0 -0
  22. snappy/dev/extended_ptolemy/__init__.py +8 -0
  23. snappy/dev/extended_ptolemy/closed.py +106 -0
  24. snappy/dev/extended_ptolemy/complexVolumesClosed.py +149 -0
  25. snappy/dev/extended_ptolemy/direct.py +42 -0
  26. snappy/dev/extended_ptolemy/extended.py +406 -0
  27. snappy/dev/extended_ptolemy/giac_helper.py +43 -0
  28. snappy/dev/extended_ptolemy/giac_rur.py +129 -0
  29. snappy/dev/extended_ptolemy/gluing.py +46 -0
  30. snappy/dev/extended_ptolemy/phc_wrapper.py +220 -0
  31. snappy/dev/extended_ptolemy/printMatrices.py +70 -0
  32. snappy/dev/vericlosed/__init__.py +1 -0
  33. snappy/dev/vericlosed/computeApproxHyperbolicStructureNew.py +159 -0
  34. snappy/dev/vericlosed/computeApproxHyperbolicStructureOrb.py +90 -0
  35. snappy/dev/vericlosed/computeVerifiedHyperbolicStructure.py +111 -0
  36. snappy/dev/vericlosed/gimbalLoopFinder.py +130 -0
  37. snappy/dev/vericlosed/hyperbolicStructure.py +313 -0
  38. snappy/dev/vericlosed/krawczykCertifiedEdgeLengthsEngine.py +165 -0
  39. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +122 -0
  40. snappy/dev/vericlosed/orb/__init__.py +1 -0
  41. snappy/dev/vericlosed/orb/orb_solution_for_snappea_finite_triangulation_mac +0 -0
  42. snappy/dev/vericlosed/parseVertexGramMatrixFile.py +47 -0
  43. snappy/dev/vericlosed/polishApproxHyperbolicStructure.py +61 -0
  44. snappy/dev/vericlosed/test.py +54 -0
  45. snappy/dev/vericlosed/truncatedComplex.py +176 -0
  46. snappy/dev/vericlosed/verificationError.py +58 -0
  47. snappy/dev/vericlosed/verifyHyperbolicStructureEngine.py +177 -0
  48. snappy/doc/_images/SnapPy-196.png +0 -0
  49. snappy/doc/_images/geodesics.jpg +0 -0
  50. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  51. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  52. snappy/doc/_images/mac.png +0 -0
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  56. snappy/doc/_images/ubuntu.png +0 -0
  57. snappy/doc/_images/win7.png +0 -0
  58. snappy/doc/_sources/additional_classes.rst.txt +40 -0
  59. snappy/doc/_sources/bugs.rst.txt +14 -0
  60. snappy/doc/_sources/censuses.rst.txt +51 -0
  61. snappy/doc/_sources/credits.rst.txt +75 -0
  62. snappy/doc/_sources/development.rst.txt +259 -0
  63. snappy/doc/_sources/index.rst.txt +182 -0
  64. snappy/doc/_sources/installing.rst.txt +247 -0
  65. snappy/doc/_sources/manifold.rst.txt +6 -0
  66. snappy/doc/_sources/manifoldhp.rst.txt +46 -0
  67. snappy/doc/_sources/news.rst.txt +355 -0
  68. snappy/doc/_sources/other.rst.txt +25 -0
  69. snappy/doc/_sources/platonic_census.rst.txt +20 -0
  70. snappy/doc/_sources/plink.rst.txt +102 -0
  71. snappy/doc/_sources/ptolemy.rst.txt +66 -0
  72. snappy/doc/_sources/ptolemy_classes.rst.txt +42 -0
  73. snappy/doc/_sources/ptolemy_examples1.rst.txt +298 -0
  74. snappy/doc/_sources/ptolemy_examples2.rst.txt +363 -0
  75. snappy/doc/_sources/ptolemy_examples3.rst.txt +301 -0
  76. snappy/doc/_sources/ptolemy_examples4.rst.txt +61 -0
  77. snappy/doc/_sources/ptolemy_prelim.rst.txt +105 -0
  78. snappy/doc/_sources/screenshots.rst.txt +21 -0
  79. snappy/doc/_sources/snap.rst.txt +87 -0
  80. snappy/doc/_sources/snappy.rst.txt +28 -0
  81. snappy/doc/_sources/spherogram.rst.txt +103 -0
  82. snappy/doc/_sources/todo.rst.txt +47 -0
  83. snappy/doc/_sources/triangulation.rst.txt +11 -0
  84. snappy/doc/_sources/tutorial.rst.txt +49 -0
  85. snappy/doc/_sources/verify.rst.txt +210 -0
  86. snappy/doc/_sources/verify_internals.rst.txt +79 -0
  87. snappy/doc/_static/SnapPy-horizontal-128.png +0 -0
  88. snappy/doc/_static/SnapPy.ico +0 -0
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  147. snappy/doc/_static/snappy_sphinx_rtd_theme.css +42 -0
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  153. snappy/doc/development.html +384 -0
  154. snappy/doc/genindex.html +1331 -0
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  157. snappy/doc/manifold.html +3452 -0
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  162. snappy/doc/platonic_census.html +375 -0
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  164. snappy/doc/ptolemy.html +254 -0
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  166. snappy/doc/ptolemy_examples1.html +409 -0
  167. snappy/doc/ptolemy_examples2.html +471 -0
  168. snappy/doc/ptolemy_examples3.html +414 -0
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  171. snappy/doc/py-modindex.html +165 -0
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  179. snappy/doc/triangulation.html +1584 -0
  180. snappy/doc/tutorial.html +159 -0
  181. snappy/doc/verify.html +330 -0
  182. snappy/doc/verify_internals.html +1235 -0
  183. snappy/drilling/__init__.py +456 -0
  184. snappy/drilling/barycentric.py +103 -0
  185. snappy/drilling/constants.py +5 -0
  186. snappy/drilling/crush.py +270 -0
  187. snappy/drilling/cusps.py +125 -0
  188. snappy/drilling/debug.py +242 -0
  189. snappy/drilling/epsilons.py +6 -0
  190. snappy/drilling/exceptions.py +55 -0
  191. snappy/drilling/moves.py +620 -0
  192. snappy/drilling/peripheral_curves.py +210 -0
  193. snappy/drilling/perturb.py +188 -0
  194. snappy/drilling/shorten.py +36 -0
  195. snappy/drilling/subdivide.py +274 -0
  196. snappy/drilling/test.py +23 -0
  197. snappy/drilling/test_cases.py +126 -0
  198. snappy/drilling/tracing.py +351 -0
  199. snappy/exceptions.py +26 -0
  200. snappy/export_stl.py +120 -0
  201. snappy/exterior_to_link/__init__.py +2 -0
  202. snappy/exterior_to_link/barycentric_geometry.py +463 -0
  203. snappy/exterior_to_link/exceptions.py +6 -0
  204. snappy/exterior_to_link/geodesic_map.json +14408 -0
  205. snappy/exterior_to_link/hyp_utils.py +112 -0
  206. snappy/exterior_to_link/link_projection.py +323 -0
  207. snappy/exterior_to_link/main.py +197 -0
  208. snappy/exterior_to_link/mcomplex_with_expansion.py +261 -0
  209. snappy/exterior_to_link/mcomplex_with_link.py +687 -0
  210. snappy/exterior_to_link/mcomplex_with_memory.py +162 -0
  211. snappy/exterior_to_link/pl_utils.py +491 -0
  212. snappy/exterior_to_link/put_in_S3.py +156 -0
  213. snappy/exterior_to_link/rational_linear_algebra.py +123 -0
  214. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +135 -0
  215. snappy/exterior_to_link/simplify_to_base_tri.py +114 -0
  216. snappy/exterior_to_link/stored_moves.py +475 -0
  217. snappy/exterior_to_link/test.py +31 -0
  218. snappy/filedialog.py +28 -0
  219. snappy/geometric_structure/__init__.py +212 -0
  220. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  221. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  222. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  223. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  224. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  225. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  226. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  227. snappy/geometric_structure/geodesic/__init__.py +0 -0
  228. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  229. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  230. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  231. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  232. snappy/geometric_structure/geodesic/constants.py +6 -0
  233. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  234. snappy/geometric_structure/geodesic/fixed_points.py +93 -0
  235. snappy/geometric_structure/geodesic/geodesic_start_point_info.py +435 -0
  236. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  237. snappy/geometric_structure/geodesic/line.py +30 -0
  238. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  239. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  240. snappy/geometric_structure/test.py +22 -0
  241. snappy/gui.py +121 -0
  242. snappy/horoviewer.py +443 -0
  243. snappy/hyperboloid/__init__.py +212 -0
  244. snappy/hyperboloid/distances.py +245 -0
  245. snappy/hyperboloid/horoball.py +19 -0
  246. snappy/hyperboloid/line.py +35 -0
  247. snappy/hyperboloid/point.py +9 -0
  248. snappy/hyperboloid/triangle.py +29 -0
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  250. snappy/infowindow.py +65 -0
  251. snappy/isometry_signature.py +382 -0
  252. snappy/len_spec/__init__.py +596 -0
  253. snappy/len_spec/geodesic_info.py +110 -0
  254. snappy/len_spec/geodesic_key_info_dict.py +117 -0
  255. snappy/len_spec/geodesic_piece.py +143 -0
  256. snappy/len_spec/geometric_structure.py +182 -0
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  258. snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
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  261. snappy/len_spec/test_cases.py +69 -0
  262. snappy/len_spec/tile.py +275 -0
  263. snappy/len_spec/word.py +86 -0
  264. snappy/manifolds/HTWKnots/alternating.gz +0 -0
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  277. snappy/ptolemy/fieldExtensions.py +153 -0
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+
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+ <section id="credits">
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+ <h1>Credits<a class="headerlink" href="#credits" title="Link to this heading"></a></h1>
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+ <p>Primary development and maintenance:</p>
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+ <ul class="simple">
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+ <li><p><a class="reference external" href="http://www.math.uic.edu/~culler">Marc Culler</a></p></li>
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+ <li><p><a class="reference external" href="http://dunfield.info">Nathan Dunfield</a></p></li>
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+ <li><p><a class="reference external" href="http://www.unhyperbolic.org/">Matthias Goerner</a></p></li>
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+ <li><p><a class="reference external" href="http://www.geometrygames.org">Jeff Weeks</a></p></li>
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+ </ul>
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+ <p>Additional contributions:</p>
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+ <ul class="simple">
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+ <li><p>Mark Bell, Tracy Hall, Saul Schleimer, <a class="reference external" href="https://github.com/MarkCBell/twister">Twister</a>.</p></li>
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+ <li><p>Jim Hoste and Morwen Thistlethwaite, manifold and link censuses.</p></li>
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+ <li><p>Ben Burton, manifold censuses and isosig code.</p></li>
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+ <li><p>Abhijit Champanerkar and Ilya Kofman, knot censuses.</p></li>
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+ <li><p>Robert Lipschitz and Jennet Dickinson, improvements to Spherogram.</p></li>
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+ <li><p>Malik Obeidin, improvements to Spherogram and the manifold
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+ databases.</p></li>
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+ <li><p>Malik Obeidin and Cameron Rudd, exterior to link diagram code.</p></li>
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+ <li><p>Jose Sanchez, 3D printing code.</p></li>
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+ <li><p>Jean-Philippe Burelle, SL(2, C) character variety code.</p></li>
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+ <li><p>David Bachman, Henry Segerman and Saul Schleimer, initial code the
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+ raytraced inside view is based on.</p></li>
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+ <li><p>Zoltán Szabó, computing Knot Floer homology.</p></li>
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+ <li><p><a class="reference external" href="http://pari.math.u-bordeaux.fr/">PARI library</a>.</p></li>
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+ <li><p><a class="reference external" href="http://crd-legacy.lbl.gov/~dhbailey/mpdist/">QD quad-double library</a>.</p></li>
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+ <li><p>Frédéric Chapoton, code cleanup and linting.</p></li>
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+ <li><p>Others, please let Marc or Nathan know if we’ve forgotten you.</p></li>
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+ </ul>
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+ <section id="citing-snappy">
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+ <h2>Citing SnapPy<a class="headerlink" href="#citing-snappy" title="Link to this heading"></a></h2>
122
+ <p>Please cite as:</p>
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+ <p>M. Culler, N. M. Dunfield, M. Goerner, and J. R. Weeks, SnapPy, a computer program
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+ for studying the geometry and topology of 3-manifolds, <a class="reference external" href="http://snappy.computop.org">http://snappy.computop.org</a></p>
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+ <p>or in BibTeX format</p>
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+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>@misc{SnapPy,
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+ author={Culler, Marc and Dunfield, Nathan M. and Goerner,
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+ Matthias and Weeks, Jeffrey R.},
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+ title={Snap{P}y, a computer program for studying the geometry and topology of $3$-manifolds},
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+ howpublished={Available at \url{http://snappy.computop.org} (DD/MM/YYYY)},
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+ }
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+ </pre></div>
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+ </div>
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+ <p>or as an AMSRef:</p>
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+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>\bib{SnapPy}{misc}{
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+ author={Culler, Marc},
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+ author={Dunfield, Nathan M.},
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+ author={Goerner, Matthias},
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+ author={Weeks, Jeffrey R.},
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+ title={Snap{P}y, a computer program for studying the geometry and topology of $3$-manifolds},
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+ note={Available at \url{http://snappy.computop.org} (DD/MM/YYYY)}
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+ }
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+ </pre></div>
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+ </div>
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+ <p>where DD/MM/YYYY should be replaced by the date when you downloaded your
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+ copy of SnapPy.</p>
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+ <p>&#169; Copyright 2009-2025, by Marc Culler, Nathan Dunfield, Matthias Goerner, Jeffrey Weeks and others.</p>
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+ </div>
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+
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+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+
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+ <!DOCTYPE html>
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+ <html class="writer-html5" lang="en" data-content_root="./">
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+ <head>
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+ <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+ <title>Development Basics &mdash; SnapPy 3.2 documentation</title>
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+ <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
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+ <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
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+ <link rel="stylesheet" type="text/css" href="_static/snappy_sphinx_rtd_theme.css?v=1b8ec2a8" />
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+
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+ <link rel="shortcut icon" href="_static/SnapPy.ico"/>
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+ <script src="_static/jquery.js?v=5d32c60e"></script>
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+ <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
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+ <script src="_static/documentation_options.js?v=828ea960"></script>
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+ <script src="_static/doctools.js?v=9a2dae69"></script>
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+ <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
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+ <script src="_static/js/theme.js"></script>
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+ <link rel="index" title="Index" href="genindex.html" />
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+ <link rel="search" title="Search" href="search.html" />
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+ <link rel="prev" title="To Do List" href="todo.html" />
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+ </head>
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+
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+ <body class="wy-body-for-nav">
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+ <div class="wy-grid-for-nav">
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+ <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+ <div class="wy-side-scroll">
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+ <div class="wy-side-nav-search" >
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+
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+
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+
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+ <a href="index.html" class="icon icon-home">
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+ SnapPy
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+ <img src="_static/SnapPy-horizontal-128.png" class="logo" alt="Logo"/>
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+ </a>
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+ <div role="search">
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+ <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
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+ <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
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+ <input type="hidden" name="check_keywords" value="yes" />
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+ <input type="hidden" name="area" value="default" />
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+ </form>
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+ </div>
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+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
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+ <ul class="current">
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+ <li class="toctree-l1"><a class="reference internal" href="installing.html">Installing SnapPy</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="screenshots.html">Screenshots: SnapPy in action</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="tutorial.html">Tutorial</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="snappy.html">The snappy module and its classes</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="plink.html">Using SnapPy’s link editor</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="spherogram.html">Links: planar diagrams and invariants</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="snap.html">Number theory of hyperbolic 3-manifolds</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="verify.html">Verified computations</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="other.html">Other components</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="news.html">News</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="credits.html">Credits</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="bugs.html">Reporting bugs and other problems</a></li>
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+ <li class="toctree-l1"><a class="reference internal" href="todo.html">To Do List</a></li>
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+ <li class="toctree-l1 current"><a class="current reference internal" href="#">Development Basics</a><ul>
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+ <li class="toctree-l2"><a class="reference internal" href="#submitting-patches">Submitting patches</a></li>
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+ <li class="toctree-l2"><a class="reference internal" href="#macos">macOS</a></li>
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+ <li class="toctree-l2"><a class="reference internal" href="#windows">Windows</a></li>
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+ <li class="toctree-l2"><a class="reference internal" href="#linux">Linux</a></li>
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+ </ul>
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+ </li>
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+ </ul>
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+
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+ </div>
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+ </div>
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+ </nav>
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+
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+ <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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+ <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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+ <a href="index.html">SnapPy</a>
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+ </nav>
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+
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+ <div class="wy-nav-content">
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+ <div class="rst-content">
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+ <div role="navigation" aria-label="Page navigation">
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+ <ul class="wy-breadcrumbs">
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+ <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
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+ <li class="breadcrumb-item active">Development Basics</li>
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+ <li class="wy-breadcrumbs-aside">
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+ </li>
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+ </ul>
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+ <hr/>
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+ </div>
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+ <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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+ <div itemprop="articleBody">
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+
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+ <section id="development-basics">
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+ <h1>Development Basics<a class="headerlink" href="#development-basics" title="Link to this heading"></a></h1>
95
+ <section id="submitting-patches">
96
+ <h2>Submitting patches<a class="headerlink" href="#submitting-patches" title="Link to this heading"></a></h2>
97
+ <p>The source code for SnapPy and its various parts are <a class="reference external" href="https://github.com/3-manifolds">hosted on GitHub</a> as <a class="reference external" href="https://git-scm.com/">Git repositories</a>. To contribute a patch, create a free
98
+ GitHub account, fork the appropriate repository, and then send us a
99
+ pull request, as described in <a class="reference external" href="https://help.github.com/en/github/collaborating-with-issues-and-pull-requests/creating-a-pull-request">here</a>.</p>
100
+ </section>
101
+ <section id="macos">
102
+ <h2>macOS<a class="headerlink" href="#macos" title="Link to this heading"></a></h2>
103
+ <p>Here is how to get a clean development setup under macOS.</p>
104
+ <ul>
105
+ <li><p>Install the latest Python 3.13 from Python.org using the <a class="reference external" href="http://www.python.org/download/">Mac
106
+ Installer Disk Image</a>. Set your
107
+ path so that “python3” is:</p>
108
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="o">/</span><span class="n">Library</span><span class="o">/</span><span class="n">Frameworks</span><span class="o">/</span><span class="n">Python</span><span class="o">.</span><span class="n">framework</span><span class="o">/</span><span class="n">Versions</span><span class="o">/</span><span class="mf">3.13</span><span class="o">/</span><span class="nb">bin</span><span class="o">/</span><span class="n">python3</span>
109
+ </pre></div>
110
+ </div>
111
+ </li>
112
+ <li><p>Use <a class="reference external" href="https://pip.pypa.io/en/latest/index.html">pip</a> to install the
113
+ following packages:</p>
114
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="n">setuptools</span> <span class="n">virtualenv</span> <span class="n">wheel</span> <span class="n">pip</span>
115
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">cython</span> <span class="c1"># Used for Python-C interfacing</span>
116
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">sphinx</span> <span class="c1"># For building the documentation</span>
117
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">ipython</span> <span class="c1"># Improved Python shell</span>
118
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">py2app</span> <span class="c1"># For making app bundles</span>
119
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyx</span> <span class="n">FXrays</span> <span class="n">low_index</span>
120
+ </pre></div>
121
+ </div>
122
+ </li>
123
+ <li><p>Get the source code from the repository, using Git. For
124
+ example you can install Git via its <a class="reference external" href="https://www.git-scm.org/">package installer</a>. Now do:</p>
125
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">plink</span><span class="o">.</span><span class="n">git</span>
126
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">spherogram</span><span class="o">.</span><span class="n">git</span>
127
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">snappy</span><span class="o">.</span><span class="n">git</span>
128
+ </pre></div>
129
+ </div>
130
+ </li>
131
+ <li><p>Test the stand-alone link editor:</p>
132
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">plink</span>
133
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
134
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">plink</span><span class="o">.</span><span class="n">app</span> <span class="c1"># Link editor appears!</span>
135
+ </pre></div>
136
+ </div>
137
+ <p>This last command runs the script <code class="docutils literal notranslate"><span class="pre">plink/app.py</span></code>; the real code for
138
+ the link editor is in <code class="docutils literal notranslate"><span class="pre">plink/__init__.py</span></code>.</p>
139
+ </li>
140
+ <li><p>Build and install Spherogram:</p>
141
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="o">../</span><span class="n">spherogram</span>
142
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
143
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">test</span>
144
+ </pre></div>
145
+ </div>
146
+ </li>
147
+ <li><p>Now build SnapPy itself. One builds it twice to generate the
148
+ documentation, much of which is extracted from the installed module:</p>
149
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="o">../</span><span class="n">snappy</span>
150
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
151
+ <span class="n">python3</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">test</span> <span class="c1"># Run the tests; pretty picture should appear.</span>
152
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">snappy</span><span class="o">.</span><span class="n">app</span> <span class="c1">#SnapPy starts!</span>
153
+ </pre></div>
154
+ </div>
155
+ <p>To build the clickable app, just do the following:</p>
156
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">mac_osx_app</span>
157
+ <span class="n">python3</span> <span class="n">release</span><span class="o">.</span><span class="n">py</span> <span class="o">--</span><span class="n">manual</span>
158
+ </pre></div>
159
+ </div>
160
+ <p>though for general development purposes <code class="docutils literal notranslate"><span class="pre">python3</span> <span class="pre">-m</span> <span class="pre">snappy.app</span></code> is
161
+ usually the way to go.</p>
162
+ </li>
163
+ </ul>
164
+ <p>Some major parts of the SnapPy codebase are:</p>
165
+ <ul class="simple">
166
+ <li><p><code class="docutils literal notranslate"><span class="pre">SnapPy.pyx</span></code>, <code class="docutils literal notranslate"><span class="pre">SnapPycore.pxi</span></code>, <code class="docutils literal notranslate"><span class="pre">SnapPy.pxi</span></code>: The Cython interface
167
+ to the SnapPea kernel</p></li>
168
+ <li><p><code class="docutils literal notranslate"><span class="pre">opengl/CyOpenGL*.pyx</span></code>: The Cython interface to OpenGL*</p></li>
169
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/app.py</span></code>: The core GUI code</p></li>
170
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/polyviewer.py</span></code>: The GUI code for Dirichlet domains</p></li>
171
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/horoviewer.py</span></code>: The GUI code for horoball pictures</p></li>
172
+ <li><p><code class="docutils literal notranslate"><span class="pre">snappy/database.py</span></code>: Interacts with the sqlite3 manifold database</p></li>
173
+ </ul>
174
+ </section>
175
+ <section id="windows">
176
+ <h2>Windows<a class="headerlink" href="#windows" title="Link to this heading"></a></h2>
177
+ <p>These instructions have been tested on Windows 10, and describe
178
+ setting up a development environment using the (free) MSVC
179
+ compiler. To build the CyPari subcomponent, which few will want or
180
+ need to do, one must install additional tools.</p>
181
+ <ul>
182
+ <li><p>Install <a class="reference external" href="https://www.python.org/downloads/windows/">Python 3.13.1</a>, specifically the
183
+ default 64-bit version (the file name will end in <code class="docutils literal notranslate"><span class="pre">amd64.exe</span></code>).
184
+ These instructions assume it has been installed in the directory
185
+ <code class="docutils literal notranslate"><span class="pre">C:\Python313</span></code> which is not the default.</p></li>
186
+ <li><p>With Python 3.13.1, you need the MSVC command line tools. You can
187
+ get them by using Microsoft’s free <a class="reference external" href="https://visualstudio.microsoft.com/thank-you-downloading-visual-studio/?sku=BuildTools&amp;rel=16">Build Tools for Visual Studio 2019</a>
188
+ installer and selecting the “C++ command line tools” and installing
189
+ the following subpackages: “MSVC v142 - VS 2019 C++ build tools”,
190
+ “Testing tools core features”, “C++/CLI support for v142”, and
191
+ “Windows 10 SDK (most recent version)”.</p>
192
+ <p>If you would like to make your own installer you will also need
193
+ <a class="reference external" href="http://www.jrsoftware.org/isdl.php">Inno Setup</a>, specifically the
194
+ unicode version; tested with version 5.5.9.</p>
195
+ </li>
196
+ <li><p>Install <a class="reference external" href="http://msys2.github.io">MSYS2</a> as appropriate for your
197
+ version Windows. Follow the instructions on the webpage to update
198
+ everything to the very latest MSYS2 (<code class="docutils literal notranslate"><span class="pre">pacman</span> <span class="pre">-Sy</span> <span class="pre">pacman;</span> <span class="pre">pacman</span>
199
+ <span class="pre">-Syu;</span> <span class="pre">pacman</span> <span class="pre">-Su</span></code> etc.). You should also install the ucrt toolchain:</p>
200
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">mingw</span><span class="o">-</span><span class="n">w64</span><span class="o">-</span><span class="n">ucrt</span><span class="o">-</span><span class="n">x86_64</span><span class="o">-</span><span class="n">toolchain</span>
201
+ </pre></div>
202
+ </div>
203
+ </li>
204
+ <li><p>Make a shortcut to <code class="docutils literal notranslate"><span class="pre">c:\msys64\msys2.exe</span></code> as you will be using it all
205
+ the time; alternatively, pin <code class="docutils literal notranslate"><span class="pre">mys2.exe</span></code> to your taskbar.</p></li>
206
+ <li><p>Install some additional packages:</p>
207
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">git</span> <span class="n">make</span> <span class="n">nano</span> <span class="n">openssh</span> <span class="n">perl</span> <span class="n">tar</span> <span class="n">unzip</span> <span class="n">wget</span> <span class="n">winpty</span> <span class="n">patch</span>
208
+ </pre></div>
209
+ </div>
210
+ </li>
211
+ <li><p>Install your favorite text editor, for example you can install Emacs
212
+ via:</p>
213
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pacman</span> <span class="o">-</span><span class="n">S</span> <span class="n">mingw</span><span class="o">-</span><span class="n">w64</span><span class="o">-</span><span class="n">x86_64</span><span class="o">-</span><span class="n">emacs</span>
214
+ </pre></div>
215
+ </div>
216
+ </li>
217
+ <li><p>Make it so that MinGW, Python, and Inno Setup are all in your PATH,
218
+ as well as work around some stupid bug, by making the end of your
219
+ “~/.bash_profile” file to read:</p>
220
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>PATH=/c/Python313:/c/Python313/Scripts:$PATH
221
+ PATH=$PATH:&#39;/c/Program Files (x86)/Inno Setup 5&#39;
222
+ export PATH
223
+ alias emacs=&quot;/mingw64/bin/emacs&quot;
224
+ winpty bash; exit
225
+ </pre></div>
226
+ </div>
227
+ <p>For example, do:</p>
228
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">nano</span> <span class="o">~/.</span><span class="n">bash_profile</span>
229
+ </pre></div>
230
+ </div>
231
+ </li>
232
+ <li><p>Make sure you have the right version of Python in your path by
233
+ typing:</p>
234
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">--</span><span class="n">version</span>
235
+ </pre></div>
236
+ </div>
237
+ <p>You should see something like <code class="docutils literal notranslate"><span class="pre">Python</span> <span class="pre">3.13.1</span></code>.</p>
238
+ </li>
239
+ <li><p>Use pip to install some basic tools:</p>
240
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="n">pip</span> <span class="n">setuptools</span> <span class="n">wheel</span> <span class="c1"># Upgrades pip to the current version.</span>
241
+ <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyreadline</span> <span class="n">sphinx</span> <span class="n">cython</span> <span class="n">cypari</span> <span class="n">pyx</span> <span class="n">FXrays</span> <span class="n">low_index</span>
242
+ </pre></div>
243
+ </div>
244
+ </li>
245
+ <li><p>Fetch the latest development versions of the source straight from
246
+ the t3m repository:</p>
247
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">plink</span><span class="o">.</span><span class="n">git</span>
248
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">spherogram</span><span class="o">.</span><span class="n">git</span>
249
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">snappy</span><span class="o">.</span><span class="n">git</span>
250
+ </pre></div>
251
+ </div>
252
+ </li>
253
+ <li><p>Build the components, from easiest to hardest, and then test:</p>
254
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">plink</span>
255
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
256
+ <span class="n">cd</span> <span class="o">../</span><span class="n">Spherogram</span>
257
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
258
+ <span class="n">cd</span> <span class="o">../</span><span class="n">SnapPy</span>
259
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
260
+ <span class="n">cd</span> <span class="o">..</span>
261
+ <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">SnapPy</span><span class="o">.</span><span class="n">test</span>
262
+ </pre></div>
263
+ </div>
264
+ </li>
265
+ <li><p>To run the app, you can just do:</p>
266
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">snappy</span><span class="o">.</span><span class="n">app</span>
267
+ </pre></div>
268
+ </div>
269
+ </li>
270
+ <li><p>To build the binary installer, you need PyInstaller:</p>
271
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="n">pyinstaller</span>
272
+ </pre></div>
273
+ </div>
274
+ <p>To build the binary installer do:</p>
275
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">windows_exe</span>
276
+ <span class="n">python</span> <span class="n">make</span><span class="o">.</span><span class="n">py</span>
277
+ </pre></div>
278
+ </div>
279
+ <p>You will need to close the SnapPy window that pops up here to
280
+ complete the build process.</p>
281
+ </li>
282
+ <li><p>Useful tips for those coming from Unix. In MSYS2, your home
283
+ directory is really something like:</p>
284
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">c</span><span class="p">:</span>\<span class="n">msys2</span>\<span class="n">home</span>\<span class="n">Nathan</span> <span class="n">Dunfield</span>
285
+ </pre></div>
286
+ </div>
287
+ <p>whereas your Windows 10 home directory is:</p>
288
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">c</span><span class="p">:</span>\<span class="n">Users</span>\<span class="n">Nathan</span> <span class="n">Dunfield</span>
289
+ </pre></div>
290
+ </div>
291
+ <p>It is handy to have symbolic links from your MSYS2 home directory to
292
+ the Downloads and Desktop folders on the Windows side. <a class="reference external" href="http://www.howtogeek.com/howto/16226/">See this
293
+ discussion</a>, but basically
294
+ you start a “Command Prompt” as Administrator and do:</p>
295
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="s2">&quot;C:\msys64\home\Nathan Dunfield&quot;</span>
296
+ <span class="n">mklink</span> <span class="o">/</span><span class="n">D</span> <span class="n">Desktop</span> <span class="s2">&quot;C:\Users\Nathan Dunfield\Desktop&quot;</span>
297
+ <span class="n">mklink</span> <span class="o">/</span><span class="n">D</span> <span class="n">Downloads</span> <span class="s2">&quot;C:\Users\Nathan Dunfield\Downloads&quot;</span>
298
+ </pre></div>
299
+ </div>
300
+ </li>
301
+ </ul>
302
+ </section>
303
+ <section id="linux">
304
+ <h2>Linux<a class="headerlink" href="#linux" title="Link to this heading"></a></h2>
305
+ <p>Things you’ll need:</p>
306
+ <ul>
307
+ <li><p>Python 3 with Tkinter: You’ll need to have <a class="reference external" href="http://python.org">Python</a> (version 3.9 or newer) and <a class="reference external" href="http://tcl.tk">Tk</a> (at least version 8.5) with <a class="reference external" href="http://wiki.python.org/moin/TkInter">Tkinter</a> to connect them, including
308
+ the header files. For instance, on Debian or Ubuntu, install the
309
+ packages “python3-tk”, “python3-pip”, and “python3-dev”. On Fedora,
310
+ you’ll want e.g. “python3-tkinter”, “python3-pip”, and
311
+ “python3-devel”, and “python3-wheel”.</p></li>
312
+ <li><p>Test that Python is in order by installing PLink from source:</p>
313
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">user</span> <span class="n">plink</span>
314
+ <span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">plink</span><span class="o">.</span><span class="n">app</span> <span class="c1"># Should start the link editor!</span>
315
+ </pre></div>
316
+ </div>
317
+ </li>
318
+ </ul>
319
+ <ul id="openglmesa">
320
+ <li><p>Support for OpenGL (3D graphics): This is built in on OS X and the
321
+ most installations of Fedora and Ubuntu. But you’ll need the <a class="reference external" href="http://www.mesa3d.org/">MESA</a> header files “gl.h” and “glu.h” to compile
322
+ SnapPy. On Debian and Ubuntu, install “libglu1-mesa-dev”; On Fedora install
323
+ “mesa-libGLU-devel”.</p></li>
324
+ <li><p><a class="reference external" href="http://cython.org">Cython</a>, which you can install via:</p>
325
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">user</span> <span class="n">cython</span>
326
+ </pre></div>
327
+ </div>
328
+ </li>
329
+ <li><p>The gcc C++ compiler, g++.</p></li>
330
+ <li><p>Fetch the latest development versions of the source straight from
331
+ the repository:</p>
332
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">PLink</span><span class="o">.</span><span class="n">git</span>
333
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">Spherogram</span><span class="o">.</span><span class="n">git</span>
334
+ <span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">Snappy</span><span class="o">.</span><span class="n">git</span>
335
+ </pre></div>
336
+ </div>
337
+ </li>
338
+ <li><p>Build the components, from easiest to hardest, and then test:</p>
339
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">PLink</span>
340
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
341
+ <span class="n">cd</span> <span class="o">../</span><span class="n">Spherogram</span>
342
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
343
+ <span class="n">cd</span> <span class="o">../</span><span class="n">SnapPy</span>
344
+ <span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">pip_install</span>
345
+ <span class="n">cd</span> <span class="o">..</span>
346
+ <span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">SnapPy</span><span class="o">.</span><span class="n">test</span>
347
+ </pre></div>
348
+ </div>
349
+ </li>
350
+ </ul>
351
+ </section>
352
+ </section>
353
+
354
+
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