snappy 3.2__cp311-cp311-macosx_10_12_x86_64.whl

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  1. snappy/CyOpenGL.cpython-311-darwin.so +0 -0
  2. snappy/SnapPy.cpython-311-darwin.so +0 -0
  3. snappy/SnapPy.ico +0 -0
  4. snappy/SnapPy.png +0 -0
  5. snappy/SnapPyHP.cpython-311-darwin.so +0 -0
  6. snappy/__init__.py +760 -0
  7. snappy/app.py +605 -0
  8. snappy/app_menus.py +372 -0
  9. snappy/browser.py +998 -0
  10. snappy/cache.py +25 -0
  11. snappy/canonical.py +249 -0
  12. snappy/cusps/__init__.py +38 -0
  13. snappy/cusps/cusp_area_matrix.py +101 -0
  14. snappy/cusps/cusp_areas_from_matrix.py +173 -0
  15. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  16. snappy/cusps/test.py +21 -0
  17. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  18. snappy/database.py +454 -0
  19. snappy/db_utilities.py +79 -0
  20. snappy/decorated_isosig.py +710 -0
  21. snappy/dev/__init__.py +0 -0
  22. snappy/dev/extended_ptolemy/__init__.py +8 -0
  23. snappy/dev/extended_ptolemy/closed.py +106 -0
  24. snappy/dev/extended_ptolemy/complexVolumesClosed.py +149 -0
  25. snappy/dev/extended_ptolemy/direct.py +42 -0
  26. snappy/dev/extended_ptolemy/extended.py +406 -0
  27. snappy/dev/extended_ptolemy/giac_helper.py +43 -0
  28. snappy/dev/extended_ptolemy/giac_rur.py +129 -0
  29. snappy/dev/extended_ptolemy/gluing.py +46 -0
  30. snappy/dev/extended_ptolemy/phc_wrapper.py +220 -0
  31. snappy/dev/extended_ptolemy/printMatrices.py +70 -0
  32. snappy/dev/vericlosed/__init__.py +1 -0
  33. snappy/dev/vericlosed/computeApproxHyperbolicStructureNew.py +159 -0
  34. snappy/dev/vericlosed/computeApproxHyperbolicStructureOrb.py +90 -0
  35. snappy/dev/vericlosed/computeVerifiedHyperbolicStructure.py +111 -0
  36. snappy/dev/vericlosed/gimbalLoopFinder.py +130 -0
  37. snappy/dev/vericlosed/hyperbolicStructure.py +313 -0
  38. snappy/dev/vericlosed/krawczykCertifiedEdgeLengthsEngine.py +165 -0
  39. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +122 -0
  40. snappy/dev/vericlosed/orb/__init__.py +1 -0
  41. snappy/dev/vericlosed/orb/orb_solution_for_snappea_finite_triangulation_mac +0 -0
  42. snappy/dev/vericlosed/parseVertexGramMatrixFile.py +47 -0
  43. snappy/dev/vericlosed/polishApproxHyperbolicStructure.py +61 -0
  44. snappy/dev/vericlosed/test.py +54 -0
  45. snappy/dev/vericlosed/truncatedComplex.py +176 -0
  46. snappy/dev/vericlosed/verificationError.py +58 -0
  47. snappy/dev/vericlosed/verifyHyperbolicStructureEngine.py +177 -0
  48. snappy/doc/_images/SnapPy-196.png +0 -0
  49. snappy/doc/_images/geodesics.jpg +0 -0
  50. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  51. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  52. snappy/doc/_images/mac.png +0 -0
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  56. snappy/doc/_images/ubuntu.png +0 -0
  57. snappy/doc/_images/win7.png +0 -0
  58. snappy/doc/_sources/additional_classes.rst.txt +40 -0
  59. snappy/doc/_sources/bugs.rst.txt +14 -0
  60. snappy/doc/_sources/censuses.rst.txt +51 -0
  61. snappy/doc/_sources/credits.rst.txt +75 -0
  62. snappy/doc/_sources/development.rst.txt +259 -0
  63. snappy/doc/_sources/index.rst.txt +182 -0
  64. snappy/doc/_sources/installing.rst.txt +247 -0
  65. snappy/doc/_sources/manifold.rst.txt +6 -0
  66. snappy/doc/_sources/manifoldhp.rst.txt +46 -0
  67. snappy/doc/_sources/news.rst.txt +355 -0
  68. snappy/doc/_sources/other.rst.txt +25 -0
  69. snappy/doc/_sources/platonic_census.rst.txt +20 -0
  70. snappy/doc/_sources/plink.rst.txt +102 -0
  71. snappy/doc/_sources/ptolemy.rst.txt +66 -0
  72. snappy/doc/_sources/ptolemy_classes.rst.txt +42 -0
  73. snappy/doc/_sources/ptolemy_examples1.rst.txt +298 -0
  74. snappy/doc/_sources/ptolemy_examples2.rst.txt +363 -0
  75. snappy/doc/_sources/ptolemy_examples3.rst.txt +301 -0
  76. snappy/doc/_sources/ptolemy_examples4.rst.txt +61 -0
  77. snappy/doc/_sources/ptolemy_prelim.rst.txt +105 -0
  78. snappy/doc/_sources/screenshots.rst.txt +21 -0
  79. snappy/doc/_sources/snap.rst.txt +87 -0
  80. snappy/doc/_sources/snappy.rst.txt +28 -0
  81. snappy/doc/_sources/spherogram.rst.txt +103 -0
  82. snappy/doc/_sources/todo.rst.txt +47 -0
  83. snappy/doc/_sources/triangulation.rst.txt +11 -0
  84. snappy/doc/_sources/tutorial.rst.txt +49 -0
  85. snappy/doc/_sources/verify.rst.txt +210 -0
  86. snappy/doc/_sources/verify_internals.rst.txt +79 -0
  87. snappy/doc/_static/SnapPy-horizontal-128.png +0 -0
  88. snappy/doc/_static/SnapPy.ico +0 -0
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  147. snappy/doc/_static/snappy_sphinx_rtd_theme.css +42 -0
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  153. snappy/doc/development.html +384 -0
  154. snappy/doc/genindex.html +1331 -0
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  157. snappy/doc/manifold.html +3452 -0
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  162. snappy/doc/platonic_census.html +375 -0
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  164. snappy/doc/ptolemy.html +254 -0
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  166. snappy/doc/ptolemy_examples1.html +409 -0
  167. snappy/doc/ptolemy_examples2.html +471 -0
  168. snappy/doc/ptolemy_examples3.html +414 -0
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  171. snappy/doc/py-modindex.html +165 -0
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  179. snappy/doc/triangulation.html +1584 -0
  180. snappy/doc/tutorial.html +159 -0
  181. snappy/doc/verify.html +330 -0
  182. snappy/doc/verify_internals.html +1235 -0
  183. snappy/drilling/__init__.py +456 -0
  184. snappy/drilling/barycentric.py +103 -0
  185. snappy/drilling/constants.py +5 -0
  186. snappy/drilling/crush.py +270 -0
  187. snappy/drilling/cusps.py +125 -0
  188. snappy/drilling/debug.py +242 -0
  189. snappy/drilling/epsilons.py +6 -0
  190. snappy/drilling/exceptions.py +55 -0
  191. snappy/drilling/moves.py +620 -0
  192. snappy/drilling/peripheral_curves.py +210 -0
  193. snappy/drilling/perturb.py +188 -0
  194. snappy/drilling/shorten.py +36 -0
  195. snappy/drilling/subdivide.py +274 -0
  196. snappy/drilling/test.py +23 -0
  197. snappy/drilling/test_cases.py +126 -0
  198. snappy/drilling/tracing.py +351 -0
  199. snappy/exceptions.py +26 -0
  200. snappy/export_stl.py +120 -0
  201. snappy/exterior_to_link/__init__.py +2 -0
  202. snappy/exterior_to_link/barycentric_geometry.py +463 -0
  203. snappy/exterior_to_link/exceptions.py +6 -0
  204. snappy/exterior_to_link/geodesic_map.json +14408 -0
  205. snappy/exterior_to_link/hyp_utils.py +112 -0
  206. snappy/exterior_to_link/link_projection.py +323 -0
  207. snappy/exterior_to_link/main.py +197 -0
  208. snappy/exterior_to_link/mcomplex_with_expansion.py +261 -0
  209. snappy/exterior_to_link/mcomplex_with_link.py +687 -0
  210. snappy/exterior_to_link/mcomplex_with_memory.py +162 -0
  211. snappy/exterior_to_link/pl_utils.py +491 -0
  212. snappy/exterior_to_link/put_in_S3.py +156 -0
  213. snappy/exterior_to_link/rational_linear_algebra.py +123 -0
  214. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +135 -0
  215. snappy/exterior_to_link/simplify_to_base_tri.py +114 -0
  216. snappy/exterior_to_link/stored_moves.py +475 -0
  217. snappy/exterior_to_link/test.py +31 -0
  218. snappy/filedialog.py +28 -0
  219. snappy/geometric_structure/__init__.py +212 -0
  220. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  221. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  222. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  223. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  224. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  225. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  226. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  227. snappy/geometric_structure/geodesic/__init__.py +0 -0
  228. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  229. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  230. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  231. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  232. snappy/geometric_structure/geodesic/constants.py +6 -0
  233. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  234. snappy/geometric_structure/geodesic/fixed_points.py +93 -0
  235. snappy/geometric_structure/geodesic/geodesic_start_point_info.py +435 -0
  236. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  237. snappy/geometric_structure/geodesic/line.py +30 -0
  238. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  239. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  240. snappy/geometric_structure/test.py +22 -0
  241. snappy/gui.py +121 -0
  242. snappy/horoviewer.py +443 -0
  243. snappy/hyperboloid/__init__.py +212 -0
  244. snappy/hyperboloid/distances.py +245 -0
  245. snappy/hyperboloid/horoball.py +19 -0
  246. snappy/hyperboloid/line.py +35 -0
  247. snappy/hyperboloid/point.py +9 -0
  248. snappy/hyperboloid/triangle.py +29 -0
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  250. snappy/infowindow.py +65 -0
  251. snappy/isometry_signature.py +382 -0
  252. snappy/len_spec/__init__.py +596 -0
  253. snappy/len_spec/geodesic_info.py +110 -0
  254. snappy/len_spec/geodesic_key_info_dict.py +117 -0
  255. snappy/len_spec/geodesic_piece.py +143 -0
  256. snappy/len_spec/geometric_structure.py +182 -0
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  258. snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
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  261. snappy/len_spec/test_cases.py +69 -0
  262. snappy/len_spec/tile.py +275 -0
  263. snappy/len_spec/word.py +86 -0
  264. snappy/manifolds/HTWKnots/alternating.gz +0 -0
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  277. snappy/ptolemy/fieldExtensions.py +153 -0
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  455. snappy/twister/surfaces/S_1 +3 -0
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  459. snappy/twister/surfaces/S_2 +6 -0
  460. snappy/twister/surfaces/S_2_1 +8 -0
  461. snappy/twister/surfaces/S_2_heeg +10 -0
  462. snappy/twister/surfaces/S_3 +8 -0
  463. snappy/twister/surfaces/S_3_1 +10 -0
  464. snappy/twister/surfaces/S_4_1 +12 -0
  465. snappy/twister/surfaces/S_5_1 +14 -0
  466. snappy/twister/surfaces/heeg_fig8 +9 -0
  467. snappy/twister/twister_core.cpython-311-darwin.so +0 -0
  468. snappy/upper_halfspace/__init__.py +146 -0
  469. snappy/upper_halfspace/ideal_point.py +26 -0
  470. snappy/verify/__init__.py +13 -0
  471. snappy/verify/canonical.py +542 -0
  472. snappy/verify/complex_volume/__init__.py +18 -0
  473. snappy/verify/complex_volume/adjust_torsion.py +86 -0
  474. snappy/verify/complex_volume/closed.py +168 -0
  475. snappy/verify/complex_volume/compute_ptolemys.py +90 -0
  476. snappy/verify/complex_volume/cusped.py +56 -0
  477. snappy/verify/complex_volume/extended_bloch.py +201 -0
  478. snappy/verify/cusp_translations.py +85 -0
  479. snappy/verify/edge_equations.py +80 -0
  480. snappy/verify/exceptions.py +254 -0
  481. snappy/verify/hyperbolicity.py +224 -0
  482. snappy/verify/interval_newton_shapes_engine.py +523 -0
  483. snappy/verify/interval_tree.py +400 -0
  484. snappy/verify/krawczyk_shapes_engine.py +518 -0
  485. snappy/verify/maximal_cusp_area_matrix/__init__.py +46 -0
  486. snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +419 -0
  487. snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +153 -0
  488. snappy/verify/real_algebra.py +286 -0
  489. snappy/verify/shapes.py +25 -0
  490. snappy/verify/short_slopes.py +200 -0
  491. snappy/verify/square_extensions.py +1005 -0
  492. snappy/verify/test.py +78 -0
  493. snappy/verify/upper_halfspace/__init__.py +9 -0
  494. snappy/verify/upper_halfspace/extended_matrix.py +100 -0
  495. snappy/verify/upper_halfspace/finite_point.py +283 -0
  496. snappy/verify/upper_halfspace/ideal_point.py +426 -0
  497. snappy/verify/volume.py +128 -0
  498. snappy/version.py +2 -0
  499. snappy-3.2.dist-info/METADATA +58 -0
  500. snappy-3.2.dist-info/RECORD +503 -0
  501. snappy-3.2.dist-info/WHEEL +5 -0
  502. snappy-3.2.dist-info/entry_points.txt +2 -0
  503. snappy-3.2.dist-info/top_level.txt +28 -0
@@ -0,0 +1,519 @@
1
+ # t3m - software for studying triangulated 3-manifolds
2
+ # Copyright (C) 2002 Marc Culler, Nathan Dunfield and others
3
+ #
4
+ # This program is distributed under the terms of the
5
+ # GNU General Public License, version 2 or later, as published by
6
+ # the Free Software Foundation. See the file GPL.txt for details.
7
+
8
+ from .simplex import *
9
+ from .tetrahedron import Tetrahedron
10
+ # from numpy import dot, not_equal, zeros, compress
11
+ # from numpy.linalg import pinv as generalized_inverse
12
+ import sys
13
+ from .linalg import Vector, Matrix
14
+
15
+ # NOTE (1) The functions in this module only make sense for closed
16
+ # manifolds. It will need to be rewritten to accommodate spun normal
17
+ # surfaces. In particular, build_weights tries to compute the
18
+ # triangle weights from the quad weights. We could set them to
19
+ # infinity, I suppose, near a torus cusp.
20
+ #
21
+ # For spun surfaces we will want to compute the boundary slope. We
22
+ # should perhaps decide what the degenerate form of the boundary slope
23
+ # is for a spherical vertex link. (0/0?) For a higher genus vertex
24
+ # link the object that corresponds to a boundary slope is an element
25
+ # of H^1 of the link. This is the class represented by the shift
26
+ # cocycle. The boundary class generates the kernel of the shift
27
+ # class, in the genus 1 case. Now that I mention it, I think that
28
+ # the shift class is the natural object to compute in all cases.
29
+ #
30
+ # NOTE (2) Many of the functions in this module also assume that the
31
+ # triangulation has only one vertex. If there are more vertices then one
32
+ # has to be more careful about saying things like "bounds a thick subcomplex"
33
+ # or "bounds a thin subcomplex" - it might bound both. And an edge linkig
34
+ # surface might not be a torus. It might be good to distinguish surfaces
35
+ # that bound regular neighborhoods of graphs from other surfaces that bound
36
+ # thin subcomplexes.
37
+ #
38
+ # NOTE (3) Our plan is to create (at least) three subclasses of the
39
+ # Surface class: Closed_Surface, Spun_Surface, Bounded_Surface.
40
+
41
+ # Incidence dictionaries for quads, triangles and octagons
42
+
43
+ MeetsQuad = {E01:Vector((1,1,0)), E02:Vector((1,0,1)), E21:Vector((0,1,1)),
44
+ E32:Vector((1,1,0)), E31:Vector((1,0,1)), E03:Vector((0,1,1))}
45
+
46
+ MeetsTri = {E01:Vector((1,1,0,0)), E02:Vector((1,0,1,0)), E21:Vector((0,1,1,0)),
47
+ E32:Vector((0,0,1,1)), E31:Vector((0,1,0,1)), E03:Vector((1,0,0,1))}
48
+
49
+ MeetsOct = {E01:Vector((1,1,2)), E02:Vector((1,2,1)), E21:Vector((2,1,1)),
50
+ E32:Vector((1,1,2)), E31:Vector((1,2,1)), E03:Vector((2,1,1))}
51
+
52
+ DisjointQuad = {E01:2, E02:1, E21:0,
53
+ E32:2, E31:1, E03:0}
54
+
55
+ QuadWeights = (Vector((1,0,0)), Vector((0,1,0)), Vector((0,0,1)) )
56
+
57
+ WeightVector = Vector([1,1,1])
58
+
59
+ TypeVector = Vector([0,1,2])
60
+
61
+ # Used for converting normal surface into tetrahedron edge-shift data.
62
+ # QuadShift[k] is the shifts induced by quad Qk3 along edges (E03, E13, E23).
63
+ # Note that this follows the convention that the order of the edges
64
+ # is the same as the order of the quads, and _not_ in order E01, E02, E03.
65
+
66
+ QuadShifts = ((0, 1, -1), (-1, 0, 1), (1, -1, 0))
67
+
68
+ # The format for a coefficient vector is [T0, T1, T2, T3, Q0, Q1, Q2, ...}
69
+
70
+ NonInteger = 'Error'
71
+
72
+ # NOTE: The convention is that the order of the quads is (Q03, Q13, Q23)
73
+
74
+
75
+ def gcd(x, y):
76
+ if x == 0:
77
+ if y == 0:
78
+ raise ValueError("gcd(0,0) is undefined.")
79
+ else:
80
+ return abs(y)
81
+ x = abs(x)
82
+ y = abs(y)
83
+ while y != 0:
84
+ r = x % y
85
+ x = y
86
+ y = r
87
+ return x
88
+
89
+
90
+ def reduce_slope( slope ):
91
+ a, b = slope
92
+ if a == b == 0:
93
+ return slope, 0
94
+ g = gcd(a,b)
95
+ a, b = a/g, b/g
96
+ return (a,b), g
97
+
98
+
99
+ class Surface:
100
+
101
+ def __init__(self, manifold, quadvector):
102
+ self.Size = len(manifold)
103
+ Q = Matrix(self.Size, 3, [min(x, 1) for x in quadvector])
104
+ A = Matrix(self.Size, 3, quadvector)
105
+ self.Quadvector = quadvector
106
+ self.Coefficients = A.dot(WeightVector)
107
+ self.Quadtypes = Q.dot(TypeVector)
108
+
109
+ def type(self):
110
+ if min(self.Coefficients) < 0:
111
+ return "almost-normal"
112
+ else:
113
+ return "normal"
114
+
115
+ # computes and records hexagon shift of surface along
116
+ # the edges of each tet. Order convention of edges in
117
+ # each tet is (E03, E13, E23) the same as the standard
118
+ # order of the quads, and _not_ (E01, E02, E03).
119
+
120
+ def add_shifts(self):
121
+ shifts = []
122
+ for i in range(self.Size):
123
+ shifts += [ self.Coefficients[i] * w for w in QuadShifts[self.Quadtypes[i]]]
124
+ self.Shifts = shifts
125
+
126
+ def find_edge_linking_annuli(self, manifold):
127
+ """
128
+ Surface.find_edge_linking_annuli(mcomplex) returns a list of the
129
+ indices of those edges for which the Surface contains an edge-linking
130
+ annulus (and hence has an obvious compression).
131
+ """
132
+ if self not in manifold.NormalSurfaces:
133
+ raise ValueError('That manifold does not contain the Surface!')
134
+ linked_edges = []
135
+ for edge in manifold.Edges:
136
+ is_linked = 1
137
+ for corner in edge.Corners:
138
+ quad = DisjointQuad[corner.Subsimplex]
139
+ if ( self.Coefficients[corner.Tetrahedron.Index] == 0 or
140
+ self.Quadtypes[corner.Tetrahedron.Index] != quad ):
141
+ is_linked = 0
142
+ break
143
+ if is_linked:
144
+ linked_edges.append(edge.Index)
145
+ return linked_edges
146
+
147
+ def info(self, out=sys.stdout):
148
+ if self.type() == "normal":
149
+ out.write("Normal surface\n")
150
+ for i in range(self.Size):
151
+ quad_weight = self.Coefficients[i]
152
+ if quad_weight == -1:
153
+ weight = " Quad Type Q%d3, weight: octagon" % self.Quadtypes[i]
154
+ elif quad_weight > 0:
155
+ weight = " Quad Type Q%d3, weight %d" % (self.Quadtypes[i], quad_weight)
156
+ else:
157
+ weight = "No quads"
158
+ out.write(weight + "\n")
159
+
160
+
161
+ class ClosedSurface(Surface):
162
+
163
+ def __init__(self, manifold, quadvector):
164
+ Surface.__init__(self, manifold, quadvector)
165
+ self.build_weights(manifold)
166
+ self.build_bounding_info(manifold)
167
+ self.find_euler_characteristic(manifold)
168
+
169
+ def build_weights(self, manifold):
170
+ """
171
+ Use self.QuadWeights self.QuadTypes vector to construct
172
+ self.Weights and self.EdgeWeights. The vector self.Weights has size
173
+ 7T and gives the weights of triangles and quads in each 3-simplex.
174
+ In each bank of 7 weights, the first 4 are triangle weights and the
175
+ last 3 are quad weights.
176
+ """
177
+
178
+ # Here is how it works. We use the system of normal surface
179
+ # equations defined as follows. For each edge e, and each face f
180
+ # containing e, let t1 and t2 be the two tetrahedra containing f.
181
+ # The weight of e can be expressed as the sum of two quad weights
182
+ # and two triangle weights in each of t1 and t2. Set these
183
+ # expressions equal to get one equation in the system. The
184
+ # resulting system can be written as Aw = Bq where w is the
185
+ # (unknown) vector of triangle weights and q is the (known) vector
186
+ # of quad weights. Note that this system does not have positive
187
+ # coefficients, and the matrix A is singular with null space
188
+ # spanned by the triangle weights of the vertex links, which of
189
+ # course have all quad weights equal to 0. We can make the system
190
+ # non-singular by restricting to the orthogonal complement of the
191
+ # null space, i.e. by adding an equation for each vertex v which
192
+ # sets the sum of the coefficients of triangles in the support of
193
+ # Link(v) equal to 0. The resulting system A'w = b is now
194
+ # non-singular, but not square. We solve it by using the
195
+ # "generalized inverse". We then adjust the solution vector by
196
+ # adding the unique linear combination of vertex links which
197
+ # produces a non-negative vector w' with a coefficient of 0 on
198
+ # some triangle in each vertex links. Now we can construct
199
+ # self.Weights by interleaving the vector w' and the vector q of
200
+ # quadweights. The vector self.EdgeWeights is constructed by
201
+ # simply multiplying the incidence matrix for edges meeting quads
202
+ # and triangles times the vector self.Weights.
203
+
204
+ self.Weights = Vector( 7*self.Size )
205
+ eqns = []
206
+ constants = []
207
+ edge_matrix = []
208
+ for edge in manifold.Edges:
209
+
210
+ # Build the row of the incidence matrix that records which quads
211
+ # and triangles meet this edge. We can use any tetrahedron that
212
+ # meets this edge to compute the row.
213
+
214
+ edge_row = Vector( 7*len(manifold) )
215
+ corner = edge.Corners[0]
216
+ j = corner.Tetrahedron.Index
217
+ edge_row[7*j:7*j+4] = MeetsTri[corner.Subsimplex]
218
+ if not self.Coefficients[j] == -1:
219
+ edge_row[7*j+4:7*j+7] = MeetsQuad[corner.Subsimplex]
220
+ else:
221
+ edge_row[7*j+4:7*j+7] = MeetsOct[corner.Subsimplex]
222
+ edge_matrix.append(edge_row)
223
+
224
+ # Build a row of A and a coefficient of the right hand side for
225
+ # each pair of adjacent 3-simplices that meet this edge.
226
+ for i in range(len(edge.Corners) - 1):
227
+ j = edge.Corners[i].Tetrahedron.Index
228
+ k = edge.Corners[i+1].Tetrahedron.Index
229
+ row = Vector(4*len(manifold))
230
+ row[4*j:4*j+4] = MeetsTri[edge.Corners[i].Subsimplex]
231
+ row[4*k:4*k+4] -= MeetsTri[edge.Corners[i+1].Subsimplex]
232
+ eqns.append(row)
233
+ c = 0
234
+ if self.Coefficients[k] == -1:
235
+ c = MeetsOct[edge.Corners[i+1].Subsimplex][self.Quadtypes[k]]
236
+ else:
237
+ if MeetsQuad[edge.Corners[i+1].Subsimplex][self.Quadtypes[k]]:
238
+ c = self.Coefficients[k]
239
+ if self.Coefficients[j] == -1:
240
+ c -= MeetsOct[edge.Corners[i].Subsimplex][self.Quadtypes[j]]
241
+ else:
242
+ if MeetsQuad[edge.Corners[i].Subsimplex][self.Quadtypes[j]]:
243
+ c -= self.Coefficients[j]
244
+ constants.append(c)
245
+ # Now add the extra equations to kill off the vertex links.
246
+ for vertex in manifold.Vertices:
247
+ eqns.append(vertex.IncidenceVector)
248
+ constants.append(0)
249
+
250
+ A = Matrix(eqns)
251
+ b = Vector(constants)
252
+ x = A.solve(b)
253
+ # Subtract off as many vertex links as possible.
254
+ for vertex in manifold.Vertices:
255
+ vert_vec = vertex.IncidenceVector
256
+ m = min([x[i] for i, w in enumerate(vert_vec) if w])
257
+ x -= Vector(m*vert_vec)
258
+
259
+ for i in range(len(manifold)):
260
+ for j in range(4):
261
+ v = x[4*i+j]
262
+ assert int(v) == v
263
+ self.Weights[7*i + j ] = int(v)
264
+ if not self.Coefficients[i] == -1:
265
+ self.Weights[7*i + 4: 7*i + 7] = (
266
+ self.Coefficients[i]*QuadWeights[int(self.Quadtypes[i])] )
267
+ else:
268
+ self.Weights[7*i + 4: 7*i + 7] = QuadWeights[int(self.Quadtypes[i])]
269
+
270
+ self.EdgeWeights = Matrix(edge_matrix).dot(self.Weights)
271
+
272
+ def find_euler_characteristic(self, manifold):
273
+ # An EdgeValence is the number of tetrahedra that meet the edge.
274
+ # The number of 2-simplices that meet the edge is larger by 1 in
275
+ # the case of a boundary edge.
276
+ valences = Vector(manifold.EdgeValences)
277
+ for edge in manifold.Edges:
278
+ if edge.IntOrBdry == 'bdry':
279
+ valences[edge.Index] += 1
280
+ V = sum(self.EdgeWeights)
281
+ E = (self.EdgeWeights*valences)/2
282
+ F = sum(abs(self.Weights))
283
+ self.EulerCharacteristic = V - E + F
284
+
285
+ # takes either a triangle given as the corresponding vertex
286
+ # or a quad given as an edge disjoint from it.
287
+
288
+ def get_weight(self, tet_number, subsimplex):
289
+ D = {V0: 0, V1:1, V2:2, V3:3, E03:4, E12:4, E13:5, E02:5, E23:6, E01:6}
290
+ return self.Weights[7*tet_number + D[subsimplex] ]
291
+
292
+ def has_quad(self, tet_number):
293
+ return max([self.get_weight(tet_number, e) for e in [E01, E02, E03]]) > 0
294
+
295
+ def get_edge_weight(self, edge):
296
+ j = edge.Index
297
+ return self.EdgeWeights[j]
298
+
299
+ # The next function decides if a normal surface bounds a subcomplex.
300
+ # The thing is to note is that given any surface, then there is a unique
301
+ # maximal subcomplex disjoint from it -- consisting of all simplices
302
+ # of any dimension disjoint from it. (For a normal surface, the boundary
303
+ # of a regular nbhd of this subcomplex is always normal.) It's not
304
+ # hard to see that a normal surface bounds a subcomplex iff all edge weights
305
+ # are 0 or 2. The function build_bounding_info sets self.BoundingInfo to:
306
+ #
307
+ # (bounds subcomplex, double bounds subcomplex, thick_or_thin)
308
+ #
309
+ # where thick_or_thin describes whether there is a tetrahedron contained
310
+ # in the subcomplex bounded by the surface or its double.
311
+
312
+ def build_bounding_info(self, manifold):
313
+ if self.type() != "normal":
314
+ return (0, 0, None)
315
+
316
+ bounds_subcomplex = 1
317
+ double_bounds_subcomplex = 1
318
+ for w in self.EdgeWeights:
319
+ if w != 0 and w != 2:
320
+ bounds_subcomplex = 0
321
+ if w != 0 and w != 1:
322
+ double_bounds_subcomplex = 0
323
+ if not (bounds_subcomplex or double_bounds_subcomplex):
324
+ break
325
+
326
+ if bounds_subcomplex or double_bounds_subcomplex:
327
+ thick_or_thin = "thin"
328
+ for tet in manifold.Tetrahedra:
329
+ inside = 1
330
+ for e in OneSubsimplices:
331
+ w = self.get_edge_weight(tet.Class[e])
332
+ if w != 0:
333
+ inside = 0
334
+ break
335
+
336
+ if inside:
337
+ thick_or_thin = "thick"
338
+ break
339
+
340
+ else:
341
+ thick_or_thin = None
342
+
343
+ self.BoundingInfo = (bounds_subcomplex, double_bounds_subcomplex, thick_or_thin)
344
+
345
+ # It is not a torus unless the edge is a loop!
346
+ # A surface is an edge linking torus iff all edge weights are 2 except one which
347
+ # is zero. Returns pair (is linking torus, edge it links around).
348
+
349
+ def is_edge_linking_torus(self):
350
+ zeroes = 0
351
+ zero_index = None
352
+ for i in range(len(self.EdgeWeights)):
353
+ w = self.EdgeWeights[i]
354
+ if w == 0:
355
+ if zeroes > 0:
356
+ return (0, None)
357
+ zeroes = 1
358
+ zero_index = i
359
+ elif w != 2:
360
+ return (0, None)
361
+
362
+ return (1, zero_index)
363
+
364
+ def info(self, manifold, out=sys.stdout):
365
+ if self.type() == "normal":
366
+ # check if really boring:
367
+ q, e = self.is_edge_linking_torus()
368
+ if q:
369
+ out.write("Normal surface #%d is thin linking torus of edge %s\n"
370
+ % (manifold.NormalSurfaces.index(self), manifold.Edges[e]))
371
+ return
372
+ out.write("Normal surface #%d of Euler characteristic %d\n"
373
+ % (manifold.NormalSurfaces.index(self), self.EulerCharacteristic))
374
+ # additional message about bounding subcomplex
375
+ b, d, t = self.BoundingInfo
376
+ if b == 1:
377
+ out.write(" Bounds %s subcomplex\n" % t)
378
+ elif d == 1:
379
+ out.write(" Double bounds %s subcomplex\n" % t)
380
+ else:
381
+ out.write(" doesn't bound subcomplex\n")
382
+ else:
383
+ out.write("Almost-normal surface #%d of Euler characteristic %d\n"
384
+ % (manifold.AlmostNormalSurfaces.index(self),
385
+ self.EulerCharacteristic))
386
+ out.write('\n')
387
+ for i in range(self.Size):
388
+ quad_weight = self.Coefficients[i]
389
+ if quad_weight == -1:
390
+ weight = " Quad Type Q%d3, weight: octagon" % self.Quadtypes[i]
391
+ elif quad_weight > 0:
392
+ weight = " Quad Type Q%d3, weight %d" % (self.Quadtypes[i], quad_weight)
393
+ else:
394
+ weight = "No quads"
395
+ out.write(" In tetrahedron %s : %s\n" %
396
+ (manifold.Tetrahedra[i], weight))
397
+ out.write("\tTri weights V0: %d V1: %d V2 : %d V3 : %d\n"
398
+ % (self.get_weight(i, V0),
399
+ self.get_weight(i, V1),
400
+ self.get_weight(i, V2),
401
+ self.get_weight(i, V3)))
402
+ out.write('\n')
403
+
404
+ for i in range(len(self.EdgeWeights)):
405
+ out.write(" Edge %s has weight %d\n"
406
+ % (manifold.Edges[i], self.EdgeWeights[i]))
407
+
408
+ def casson_split(self, manifold):
409
+ """
410
+
411
+ Returns the "Casson Split" of the manifold along the normal
412
+ surface. That is, splits the manifold open along the surface
413
+ and replaces the "combinatorial I-bundles" by I-bundles over
414
+ disks. Of course, doing so may change the topology of
415
+ complementary manifold.
416
+
417
+ """
418
+ M = manifold
419
+ have_quads = [self.has_quad(i) for i in range(len(M))]
420
+ new_tets = {}
421
+ for i in have_quads:
422
+ new_tets[i] = Tetrahedron()
423
+ for i in have_quads:
424
+ T = new_tets[i]
425
+
426
+ # -----------------end class ClosedSurface---------------------------------------
427
+
428
+
429
+ # -----------------begin class SpunSurface--------------------------------------
430
+
431
+ def dot_product(x,y):
432
+ assert len(x) == len(y)
433
+ dot = 0
434
+ for i in range(len(x)):
435
+ dot += x[i]*y[i]
436
+ return dot
437
+
438
+
439
+ class SpunSurface(Surface):
440
+
441
+ def __init__(self, manifold, quadvector):
442
+ Surface.__init__(self, manifold, quadvector)
443
+ self.Incompressible = None
444
+ self.BoundarySlope = None
445
+
446
+ def add_boundary_slope(surface, cusp_equations):
447
+ surface.BoundarySlope = (-dot_product(surface.Shifts, cusp_equations[1]),
448
+ dot_product(surface.Shifts, cusp_equations[0]) )
449
+
450
+ def find_euler_characteristic(self, manifold):
451
+ quadvector = array(self.Quadvector, 'd')
452
+ floatresult = dot(manifold.Anglevector, quadvector)
453
+ intresult = round(floatresult)
454
+ error = abs(floatresult - intresult)
455
+ if error > .0000001:
456
+ raise OverflowError('Yikes! A non-integral euler characteristic!')
457
+ return -int(intresult)
458
+
459
+ def info(self, manifold, out=sys.stdout):
460
+ out.write("SpunSurface.\n Slope: %s; Boundary components: %d; " %
461
+ reduce_slope(self.BoundarySlope))
462
+ out.write("Euler characteristic: %d\n" %
463
+ self.find_euler_characteristic(manifold))
464
+ out.write(" Incompressible: %s\n" % self.Incompressible)
465
+ for i in range(self.Size):
466
+ quad_weight = self.Coefficients[i]
467
+ if quad_weight > 0:
468
+ weight = (" Tet %d: Quad Type Q%d3, weight %d" %
469
+ (i, self.Quadtypes[i], quad_weight))
470
+ else:
471
+ weight = " Tet %d: no quads" % i
472
+ out.write(weight + "\n")
473
+
474
+
475
+ # -------------begin class ClosedSurfaceInCusped------------------------
476
+
477
+ class ClosedSurfaceInCusped(ClosedSurface):
478
+ def __init__(self, manifold, quadvector):
479
+ ClosedSurface.__init__(self, manifold, quadvector)
480
+ self.Incompressible = None
481
+ self.BoundarySlope = None
482
+
483
+ def info(self, manifold, out=sys.stdout):
484
+ out.write("ClosedSurfaceInCusped #%d: Euler %d; Incompressible %s\n" %
485
+ (manifold.ClosedSurfaces.index(self), self.EulerCharacteristic, self.Incompressible))
486
+ # check if really boring:
487
+ q, e = self.is_edge_linking_torus()
488
+ if q:
489
+ out.write(" is thin linking surface of edge %s\n" % manifold.Edges[e])
490
+ return
491
+
492
+ # additional message about bounding subcomplex
493
+ b, d, t = self.BoundingInfo
494
+ if b == 1:
495
+ out.write(" Bounds %s subcomplex\n" % t)
496
+ elif d == 1:
497
+ out.write(" Double bounds %s subcomplex\n" % t)
498
+ else:
499
+ out.write(" Doesn't bound subcomplex\n")
500
+
501
+ for i in range(self.Size):
502
+ quad_weight = self.Coefficients[i]
503
+ if quad_weight > 0:
504
+ weight = " Quad Type Q%d3, weight %d" % (self.Quadtypes[i], quad_weight)
505
+ else:
506
+ weight = "No quads"
507
+
508
+ out.write(" In tet %s : %s\n" %
509
+ (manifold.Tetrahedra[i], weight))
510
+ out.write("\tTri weights V0: %d V1: %d V2 : %d V3 : %d\n"
511
+ % (self.get_weight(i, V0),
512
+ self.get_weight(i, V1),
513
+ self.get_weight(i, V2),
514
+ self.get_weight(i, V3)))
515
+ out.write('\n')
516
+
517
+ for i in range(len(self.EdgeWeights)):
518
+ out.write(" Edge %s has weight %d\n"
519
+ % (manifold.Edges[i], self.EdgeWeights[i]))
@@ -0,0 +1,20 @@
1
+ import snappy
2
+ import snappy.snap.t3mlite as t3m
3
+
4
+
5
+ def closed_test():
6
+ for M in snappy.OrientableClosedCensus[:10]:
7
+ N = M.filled_triangulation()
8
+ T = t3m.Mcomplex(N)
9
+ T.find_normal_surfaces()
10
+ T.normal_surface_info()
11
+
12
+
13
+ def cusped_test():
14
+ for M in snappy.OrientableCuspedCensus[:10]:
15
+ T = t3m.Mcomplex(M)
16
+ T.find_normal_surfaces()
17
+
18
+
19
+ closed_test()
20
+ cusped_test()
@@ -0,0 +1,86 @@
1
+ import snappy
2
+ import regina
3
+ import snappy.snap.t3mlite as t3m
4
+ import snappy.snap.t3mlite.spun as spun
5
+
6
+
7
+ def hash_t3m_surface(surface):
8
+ ans = [surface.EulerCharacteristic]
9
+ ans += sorted(surface.EdgeWeights)
10
+ ans += sorted(surface.Quadvector)
11
+ return ans
12
+
13
+
14
+ def hash_regina_surface(S):
15
+ T = S.getTriangulation()
16
+ t = T.getNumberOfTetrahedra()
17
+ ans = [S.getEulerCharacteristic()]
18
+ ans += sorted([S.getEdgeWeight(i) for i in range(T.getNumberOfEdges())])
19
+ ans += sorted([S.getQuadCoord(i, j) for i in range(t) for j in range(3)])
20
+ return ans
21
+
22
+
23
+ def to_regina(snappy_manifold):
24
+ return regina.NTriangulation(snappy_manifold._to_string())
25
+
26
+
27
+ def vertex_surfaces(regina_triangulation):
28
+ """
29
+ Enumerate the vertex surfaces of the given triangulation
30
+ in quad coordinates.
31
+ """
32
+ surfaces = regina.NNormalSurfaceList.enumerate(
33
+ regina_triangulation, regina.NS_QUAD)
34
+ for i in range(surfaces.getNumberOfSurfaces()):
35
+ yield surfaces.getSurface(i)
36
+
37
+
38
+ def compare_closed(snappy_manifold):
39
+ N = snappy_manifold.filled_triangulation()
40
+
41
+ T = t3m.Mcomplex(N)
42
+ T.find_normal_surfaces()
43
+ t_hashes = sorted( hash_t3m_surface(S) for S in T.NormalSurfaces )
44
+
45
+ R = to_regina(N)
46
+ r_hashes = sorted( hash_regina_surface(S) for S in vertex_surfaces(R))
47
+
48
+ all_together = sum(t_hashes, [])
49
+ return t_hashes == r_hashes, len(all_together), sum(all_together)
50
+
51
+
52
+ def regina_boundary_slope(surface):
53
+ slope = surface.boundaryIntersections()
54
+ a = int(slope.entry(0,0).stringValue())
55
+ b = int(slope.entry(0,1).stringValue())
56
+ return (b, -a)
57
+
58
+
59
+ def compare_cusped(snappy_manifold):
60
+ tri_data = snappy_manifold._to_string()
61
+ T = spun.Manifold(tri_data)
62
+ t_hashes = sorted(sorted(S.quad_vector()) for S in T.normal_surfaces())
63
+ t_slopes = sorted(tuple(S.boundary_slopes()) for S in T.normal_surfaces())
64
+
65
+ R = regina.NSnapPeaTriangulation(tri_data)
66
+ t = R.getNumberOfTetrahedra()
67
+ regina_surfaces = list(vertex_surfaces(R))
68
+ r_hashes = sorted(
69
+ sorted(int(S.getQuadCoord(i, j).stringValue())
70
+ for i in range(t) for j in range(3))
71
+ for S in regina_surfaces)
72
+ r_slopes = sorted(map(regina_boundary_slope, regina_surfaces))
73
+
74
+ assert t_hashes == r_hashes and t_slopes == r_slopes
75
+
76
+
77
+ def closed_test(N=10):
78
+ for M in snappy.OrientableClosedCensus[:N]:
79
+ print(M, compare_closed(M))
80
+
81
+
82
+ def cusped_test(N=100):
83
+ for census in [snappy.CensusKnots, snappy.OrientableCuspedCensus(cusps=1)]:
84
+ for M in census:
85
+ print(M)
86
+ compare_cusped(M)