snappy 3.2__cp311-cp311-macosx_10_12_x86_64.whl
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- snappy/upper_halfspace/__init__.py +146 -0
- snappy/upper_halfspace/ideal_point.py +26 -0
- snappy/verify/__init__.py +13 -0
- snappy/verify/canonical.py +542 -0
- snappy/verify/complex_volume/__init__.py +18 -0
- snappy/verify/complex_volume/adjust_torsion.py +86 -0
- snappy/verify/complex_volume/closed.py +168 -0
- snappy/verify/complex_volume/compute_ptolemys.py +90 -0
- snappy/verify/complex_volume/cusped.py +56 -0
- snappy/verify/complex_volume/extended_bloch.py +201 -0
- snappy/verify/cusp_translations.py +85 -0
- snappy/verify/edge_equations.py +80 -0
- snappy/verify/exceptions.py +254 -0
- snappy/verify/hyperbolicity.py +224 -0
- snappy/verify/interval_newton_shapes_engine.py +523 -0
- snappy/verify/interval_tree.py +400 -0
- snappy/verify/krawczyk_shapes_engine.py +518 -0
- snappy/verify/maximal_cusp_area_matrix/__init__.py +46 -0
- snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +419 -0
- snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +153 -0
- snappy/verify/real_algebra.py +286 -0
- snappy/verify/shapes.py +25 -0
- snappy/verify/short_slopes.py +200 -0
- snappy/verify/square_extensions.py +1005 -0
- snappy/verify/test.py +78 -0
- snappy/verify/upper_halfspace/__init__.py +9 -0
- snappy/verify/upper_halfspace/extended_matrix.py +100 -0
- snappy/verify/upper_halfspace/finite_point.py +283 -0
- snappy/verify/upper_halfspace/ideal_point.py +426 -0
- snappy/verify/volume.py +128 -0
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- snappy-3.2.dist-info/WHEEL +5 -0
- snappy-3.2.dist-info/entry_points.txt +2 -0
- snappy-3.2.dist-info/top_level.txt +28 -0
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# $Id: arrow.py,v 1.3 2003/04/30 19:59:58 t3m Exp $
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# t3m - software for studying triangulated 3-manifolds
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# Copyright (C) 2002 Marc Culler, Nathan Dunfield and others
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#
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# This program is distributed under the terms of the
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# GNU General Public License, version 2 or later, as published by
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# the Free Software Foundation. See the file GPL.txt for details.
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from .simplex import *
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from .perm4 import Perm4, inv
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# I have implemented Casson's Arrow as a class whose attributes are
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# "an edge in a face in a tetrahedron". The Edge attribute is the
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# (unoriented) edge opposite to the arrow, if the arrow is thought of
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# as a directed edge. The Face attribute is the face that is disjoint
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# from the directed edge, except that it contains the head vertex,
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# i.e. the Face is the face that is normally associated to the arrow
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# when the arrow is used for gluing faces together.
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# The eArrow class is an extension of Arrow that is initialized by
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# specifying the head and tail vertices.
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# I have followed Nathan's convention that a "null arrow" is an arrow
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# whose Tetrahedron attribute is None. If an arrow A represents a
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# boundary face then A.glued() is a null arrow. If either A or B is a
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# Null Arrow then both A.glue(B) and B.glue(A) cause the appropriate
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# Neighbor of the non-None Tetrahedron to be set to None, creating a
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# boundary face. This trick allows deceptively short code to be used
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# in writing the two_to_zero move. NOTE: The Arrow.next method does NOT
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# return a null arrow if the face is a boundary face. It returns None.
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# Arrows seem to be handy for gluing tetrahedra together without too
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# much fussing about how vertices of a tetrahedron are numbered.
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# I have not tried to figure out how they will break if you try to
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# use them in a non-orientable manifold.
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# For speed, we create a lookup table for all possible gluing permutations
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_arrow_gluing_dict = {}
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for edge0, face0 in EdgeFacePairs:
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for edge1, face1 in EdgeFacePairs:
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perm = Perm4({FaceIndex[face0]:FaceIndex[flip_face[edge1, face1]],
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FaceIndex[flip_face[edge0, face0]]:FaceIndex[face1]})
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glued_face = perm.image(face0)
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_arrow_gluing_dict[edge0, face0, edge1, face1] = (perm, inv(perm), glued_face)
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# Another table to speed Arrow.opposite
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_arrow_opposite_dict = {}
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for edge, face in EdgeFacePairs:
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tail = comp(face)
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head = face & comp(edge)
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new_face = comp(OppTail[(tail, head)])
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new_edge = comp(edge)
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_arrow_opposite_dict[edge, face] = (new_edge, new_face)
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# Another table to speed Arrow.next
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_arrow_next_dict = {}
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for edge, face in EdgeFacePairs:
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for perm in Perm4.S4():
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new_edge = perm.image(edge)
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new_face = flip_face[new_edge, perm.image(face)]
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_arrow_next_dict[perm._index, edge, face] = (new_edge, new_face)
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class Arrow:
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def __init__(self, edge, face, tet):
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self.Edge = edge
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self.Face = face
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self.Tetrahedron = tet
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def __repr__(self):
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return ('< '+SubsimplexName[self.Edge]+' | ' +
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SubsimplexName[self.Face]+' | '+str(self.Tetrahedron)+' >')
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def head(self):
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return self.Face & comp(self.Edge)
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def tail(self):
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return comp(self.Face)
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# Here are the six edges of the tetrahedron, as seen from the
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# point of view of the arrow.
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def equator(self):
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return self.Tetrahedron.Class[comp(self.Edge)]
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def axis(self):
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return self.Tetrahedron.Class[self.Edge]
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def north_head(self):
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return self.Tetrahedron.Class[self.head() | OppTail[self.head(),self.tail()]]
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def south_head(self):
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return self.Tetrahedron.Class[self.head() | OppTail[self.tail(),self.head()]]
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def north_tail(self):
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return self.Tetrahedron.Class[self.tail() | OppTail[self.head(),self.tail()]]
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def south_tail(self):
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return self.Tetrahedron.Class[self.tail() | OppTail[self.tail(),self.head()]]
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def is_null(self):
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return 1 if self.Tetrahedron is None else 0
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def face_class(self):
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return self.Tetrahedron.Class[self.Face]
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# Does NOT create a new arrow.
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def reverse(self):
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self.Face = flip_face[self.Edge, self.Face]
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return self
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# By successive applications of self.next() you can walk around an edge.
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# The sequence of 1-subsimplices self.Edge are all equivalent.
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# The sequence of 2-subsimplices self.Face are the faces adjacent to the edge.
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# When you hit the boundary, self.next() returns None without changing self.
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# Does NOT create a new arrow.
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def next(self):
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if self.Tetrahedron is not None:
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perm = self.Tetrahedron.Gluing[self.Face]
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tet = self.Tetrahedron.Neighbor[self.Face]
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if tet is None:
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return None
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# Next line equivalent to:
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# self.Edge = perm.image(self.Edge)
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# self.Face = flip_face[self.Edge, perm.image(self.Face)]
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self.Edge, self.Face = _arrow_next_dict[perm._index, self.Edge, self.Face]
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self.Tetrahedron = tet
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return self
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# Glues two faces together so that other becomes self.next().
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# Returns None
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def glue(self, other):
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if self.Tetrahedron is None and other.Tetrahedron is None:
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return
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if self.Tetrahedron is None:
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other.reverse().glue(self)
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other.reverse()
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return
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if other.Tetrahedron is None:
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self.Tetrahedron.attach(self.Face, None, (0,1,2,3))
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return
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# We do this manually for speed. The below code is equivalent to
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#
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# self.Tetrahedron.attach(self.Face, other.Tetrahedron,
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# { FaceIndex[self.Face]:FaceIndex[flip_face(other.Edge,other.Face)],
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# FaceIndex[flip_face(self.Edge,self.Face)]:FaceIndex[other.Face] })
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tet0, face0, edge0 = self.Tetrahedron, self.Face, self.Edge
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tet1, face1, edge1 = other.Tetrahedron, other.Face, other.Edge
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perm, inv_perm, glued_face = _arrow_gluing_dict[edge0, face0, edge1, face1]
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tet0.Neighbor[face0] = tet1
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tet0.Gluing[face0] = perm
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tet1.Neighbor[glued_face] = tet0
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tet1.Gluing[glued_face] = inv_perm
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# Returns a COPY of self.next(), or a null arrow in the case of a boundary
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# face.
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# DOES create a new arrow.
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def glued(self):
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a = self.copy()
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if a.next() is None:
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a.Tetrahedron = None
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return a
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# Changes the arrow into its opposite.
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# Does NOT create a new arrow.
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def opposite(self):
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# Equivalent to
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# self.Face = comp(OppTail[(self.tail(),self.head())])
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# self.Edge = comp(self.Edge)
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self.Edge, self.Face = _arrow_opposite_dict[self.Edge, self.Face]
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return self
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# Rotate arrow n/3 turns clockwise about self.head()
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# Does NOT create a new arrow
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def rotate(self, n):
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for i in range(n % 3):
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head = self.head()
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tail = self.tail()
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self.Edge = tail | OppTail[(tail, head)]
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self.Face = self.Edge | head
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return self
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# DOES create a new arrow.
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def copy(self):
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return Arrow(self.Edge, self.Face, self.Tetrahedron)
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# Two arrows are equal if their attributes are equal. The
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# null arrows must be handled separately. This also allows
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# comparison with None.
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def __eq__(self, other):
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if other is None:
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return False
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if self.Tetrahedron is None and other.Tetrahedron is None:
|
201
|
+
return True
|
202
|
+
return (self.Tetrahedron == other.Tetrahedron and
|
203
|
+
self.Edge == other.Edge and
|
204
|
+
self.Face == other.Face)
|
205
|
+
|
206
|
+
def __ne__(self, other):
|
207
|
+
return not self.__eq__(other)
|
208
|
+
|
209
|
+
# The arrows associated to a given edge e form a cycle of edges linking
|
210
|
+
# e. This function returns a list of the edges in that linking cycle.
|
211
|
+
def linking_cycle(self):
|
212
|
+
a = self.copy()
|
213
|
+
cycle = []
|
214
|
+
while 1:
|
215
|
+
cycle.append(a.Tetrahedron.Class[OppositeEdge[a.Edge]])
|
216
|
+
a.next()
|
217
|
+
if a == self:
|
218
|
+
break
|
219
|
+
return cycle
|
220
|
+
|
221
|
+
# This function returns a list of those edges that are adjacent to the
|
222
|
+
# edge associated to the arrow, and meet it at its tail.
|
223
|
+
def radii(self):
|
224
|
+
a = self.copy()
|
225
|
+
radius_list = []
|
226
|
+
while 1:
|
227
|
+
a.rotate(2)
|
228
|
+
radius_list.append(a.Tetrahedron.Class[OppositeEdge[a.Edge]])
|
229
|
+
a.rotate(1).next()
|
230
|
+
if a == self:
|
231
|
+
break
|
232
|
+
return radius_list
|
233
|
+
|
234
|
+
|
235
|
+
# This class allows one to initialize an arrow by specifying the head and
|
236
|
+
# tail vertices of the directed edge.
|
237
|
+
#
|
238
|
+
class eArrow(Arrow):
|
239
|
+
|
240
|
+
def __init__(self, tet, tail, head):
|
241
|
+
self.Edge = comp( tail | head )
|
242
|
+
self.Face = comp( tail )
|
243
|
+
self.Tetrahedron = tet
|
@@ -0,0 +1,22 @@
|
|
1
|
+
# $Id: corner.py,v 1.2 2002/09/20 03:52:16 culler Exp $
|
2
|
+
# t3m - software for studying triangulated 3-manifolds
|
3
|
+
# Copyright (C) 2002 Marc Culler, Nathan Dunfield and others
|
4
|
+
#
|
5
|
+
# This program is distributed under the terms of the
|
6
|
+
# GNU General Public License, version 2 or later, as published by
|
7
|
+
# the Free Software Foundation. See the file GPL.txt for details.
|
8
|
+
|
9
|
+
from .simplex import SubsimplexName
|
10
|
+
|
11
|
+
# A Corner is a "subsimplex in a tetrahedron".
|
12
|
+
|
13
|
+
|
14
|
+
class Corner:
|
15
|
+
|
16
|
+
def __init__(self, tetrahedron, subsimplex):
|
17
|
+
self.Tetrahedron = tetrahedron
|
18
|
+
self.Subsimplex = subsimplex
|
19
|
+
|
20
|
+
def __repr__(self):
|
21
|
+
return ('<'+SubsimplexName[self.Subsimplex] + ' of ' +
|
22
|
+
str(self.Tetrahedron) + '>')
|
@@ -0,0 +1,172 @@
|
|
1
|
+
# $Id: edge.py,v 1.3 2002/09/20 03:52:16 culler Exp $
|
2
|
+
# t3m - software for studying triangulated 3-manifolds
|
3
|
+
# Copyright (C) 2002 Marc Culler, Nathan Dunfield and others
|
4
|
+
#
|
5
|
+
# This program is distributed under the terms of the
|
6
|
+
# GNU General Public License, version 2 or later, as published by
|
7
|
+
# the Free Software Foundation. See the file GPL.txt for details.
|
8
|
+
|
9
|
+
from .simplex import *
|
10
|
+
from .corner import Corner
|
11
|
+
from .arrow import Arrow
|
12
|
+
from .perm4 import Perm4
|
13
|
+
import sys
|
14
|
+
|
15
|
+
# A table used for _add_corner, equivalent to:
|
16
|
+
# other_arrow = arrow.copy().opposite()
|
17
|
+
# tail, head = other_arrow.tail(), other_arrow.head()
|
18
|
+
|
19
|
+
_edge_add_corner_dict = {}
|
20
|
+
for edge, face in EdgeFacePairs:
|
21
|
+
other_arrow = Arrow(edge, face, None).opposite()
|
22
|
+
_edge_add_corner_dict[edge, face] = other_arrow.tail(), other_arrow.head()
|
23
|
+
|
24
|
+
|
25
|
+
# An edge has an initial and terminal vertex, but these are determined
|
26
|
+
# arbitrarily when the 1-skeleton is constructed.
|
27
|
+
|
28
|
+
class Edge:
|
29
|
+
|
30
|
+
def __init__(self):
|
31
|
+
self.Index = -1
|
32
|
+
self.Name = ''
|
33
|
+
self.IntOrBdry = '' # value: '', 'int' or 'bdry'
|
34
|
+
self.Corners = [] # Corners of type "1-simplex in Tetrahedron"
|
35
|
+
self.Vertices = [] # pairs: (initial Vertex, terminal Vertex)
|
36
|
+
self.LeftBdryArrow = None # Arrows representing the two boundary faces,
|
37
|
+
self.RightBdryArrow = None # if this is a boundary edge.
|
38
|
+
self._edge_orient_cache = {}
|
39
|
+
|
40
|
+
def __repr__(self):
|
41
|
+
if self.Index > -1:
|
42
|
+
return ('e' + str(self.Index) + self.Name +
|
43
|
+
' (' + self.IntOrBdry + ')')
|
44
|
+
else:
|
45
|
+
return '< floating edge' + str(id(self)) + ' >'
|
46
|
+
|
47
|
+
# below added by NMD for more detailed printing
|
48
|
+
|
49
|
+
# returns an arrow rotating around self
|
50
|
+
|
51
|
+
def get_arrow(self):
|
52
|
+
e = self.Corners[0].Subsimplex
|
53
|
+
return Arrow(e, RightFace[e], self.Corners[0].Tetrahedron)
|
54
|
+
|
55
|
+
def info(self, out=sys.stdout):
|
56
|
+
out.write(repr(self) + "\t Edge of valence %d\tEndpoints %s\n"
|
57
|
+
% (self.valence(), self.Vertices))
|
58
|
+
if self.IntOrBdry == 'bdry':
|
59
|
+
a = self.LeftBdryArrow.copy()
|
60
|
+
a.reverse()
|
61
|
+
else:
|
62
|
+
a = self.get_arrow()
|
63
|
+
s = "\t"
|
64
|
+
for i in range(self.valence()):
|
65
|
+
s = s + repr(a) + " "
|
66
|
+
a.next()
|
67
|
+
if i > 0 and (i + 1) % 3 == 0 and i != (self.valence()-1):
|
68
|
+
s = s + "\n\t"
|
69
|
+
out.write(s + '\n')
|
70
|
+
|
71
|
+
def valence(self):
|
72
|
+
return len(self.Corners)
|
73
|
+
|
74
|
+
# Return 1 if all corners belong to distinct tetrahedra.
|
75
|
+
def distinct(self):
|
76
|
+
for corner in self.Corners:
|
77
|
+
corner.Tetrahedron.Checked = 0
|
78
|
+
for corner in self.Corners:
|
79
|
+
if corner.Tetrahedron.Checked == 1:
|
80
|
+
return 0
|
81
|
+
else:
|
82
|
+
corner.Tetrahedron.Checked = 1
|
83
|
+
return 1
|
84
|
+
|
85
|
+
# Return 1 if two sides of a 2-simplex are identified to the edge.
|
86
|
+
def self_adjacent(self):
|
87
|
+
for corner in self.Corners:
|
88
|
+
for one_subsimplex in AdjacentEdges[corner.Subsimplex]:
|
89
|
+
if corner.Tetrahedron.Class[one_subsimplex] is self:
|
90
|
+
return 1
|
91
|
+
return 0
|
92
|
+
|
93
|
+
# Return 1 if two opposite edges of a 3-simplex are identified to
|
94
|
+
# the edge.
|
95
|
+
def self_opposite(self):
|
96
|
+
count = 0
|
97
|
+
for corner in self.Corners:
|
98
|
+
if corner.Tetrahedron.Class[comp(corner.Subsimplex)] == self:
|
99
|
+
count = count + 1
|
100
|
+
return count/2
|
101
|
+
|
102
|
+
# Remove all references to self from adjoining Tetrahedra and Vertices
|
103
|
+
def erase(self):
|
104
|
+
for corner in self.Corners:
|
105
|
+
corner.Tetrahedron.Class[corner.Subsimplex] = None
|
106
|
+
for vertex in self.Vertices:
|
107
|
+
try:
|
108
|
+
vertex.Edges.remove(self)
|
109
|
+
except:
|
110
|
+
pass
|
111
|
+
self.Index = -1
|
112
|
+
|
113
|
+
# Below added 7/6/99 by NMD. Given a tetrahedra and a pair of vertices
|
114
|
+
# (a, b) returns the orientation of the edge self with respect to the arrow
|
115
|
+
# (a -> b). Returns 1 if the orientations agree and -1 if they differ.
|
116
|
+
# raises an exception if the arrow is not on this edge.
|
117
|
+
|
118
|
+
def orientation_with_respect_to(self, tet, a, b):
|
119
|
+
try:
|
120
|
+
return self._edge_orient_cache[(tet, a, b)]
|
121
|
+
except IndexError:
|
122
|
+
raise ValueError("Given corner of tet not on this edge")
|
123
|
+
|
124
|
+
def index(self):
|
125
|
+
return self.Index
|
126
|
+
|
127
|
+
def _first_embedding(self):
|
128
|
+
"""
|
129
|
+
For this edge, return an edge embedding similar
|
130
|
+
to regina, that is a pair (tetrahedron, permutation) such that
|
131
|
+
vertex 0 and 1 of the tetrahedron span the edge.
|
132
|
+
"""
|
133
|
+
|
134
|
+
corner = self.Corners[0]
|
135
|
+
tet = corner.Tetrahedron
|
136
|
+
|
137
|
+
for perm in Perm4.A4():
|
138
|
+
if corner.Subsimplex == perm.image(E01):
|
139
|
+
# Match orientation of edge given by Vertices
|
140
|
+
if tet.Class[perm.image(V0)] == self.Vertices[0]:
|
141
|
+
if tet.Class[perm.image(V1)] == self.Vertices[1]:
|
142
|
+
return (tet, perm)
|
143
|
+
|
144
|
+
def embeddings(self):
|
145
|
+
"""
|
146
|
+
Iterator through the embeddings of this edge.
|
147
|
+
An edge embedding is a pair (tetrahedron, permutation) such that
|
148
|
+
vertices of the tetrahedron that are labeled by the images of 0 and 1
|
149
|
+
under the permutation span the edge. The images of 2 and 3 of the edge
|
150
|
+
embeddings are in an orientation compatible way.
|
151
|
+
This is similar to the NEdgeEmbeddings of regina.
|
152
|
+
"""
|
153
|
+
|
154
|
+
order = len(self.Corners)
|
155
|
+
tet, perm = self._first_embedding()
|
156
|
+
for i in range(order):
|
157
|
+
yield tet, perm
|
158
|
+
face = perm.image(F2)
|
159
|
+
tet, perm = (
|
160
|
+
tet.Neighbor[face], tet.Gluing[face] * perm * Perm4( (0,1,3,2) ))
|
161
|
+
|
162
|
+
def _add_corner(self, arrow):
|
163
|
+
"""
|
164
|
+
Used by Mcomplex.build_edge_classes
|
165
|
+
"""
|
166
|
+
self.Corners.append(Corner(arrow.Tetrahedron, arrow.Edge))
|
167
|
+
# Next line equivalent to:
|
168
|
+
# other_arrow = arrow.copy().opposite()
|
169
|
+
# tail, head = other_arrow.tail(), other_arrow.head()
|
170
|
+
tail, head = _edge_add_corner_dict[arrow.Edge, arrow.Face]
|
171
|
+
self._edge_orient_cache[arrow.Tetrahedron, tail, head] = 1
|
172
|
+
self._edge_orient_cache[arrow.Tetrahedron, head, tail] = -1
|
@@ -0,0 +1,37 @@
|
|
1
|
+
# $$
|
2
|
+
# t3m - software for studying triangulated 3-manifolds
|
3
|
+
# Copyright (C) 2002 Marc Culler, Nathan Dunfield and others
|
4
|
+
#
|
5
|
+
# This program is distributed under the terms of the
|
6
|
+
# GNU General Public License, version 2 or later, as published by
|
7
|
+
# the Free Software Foundation. See the file GPL.txt for details.
|
8
|
+
|
9
|
+
from .arrow import Arrow
|
10
|
+
from .simplex import PickAnEdge
|
11
|
+
|
12
|
+
|
13
|
+
class Face:
|
14
|
+
def __init__(self):
|
15
|
+
self.Index = -1
|
16
|
+
self.IntOrBdry = ''
|
17
|
+
self.Corners = [] # Corners of type "2-simplex in Tetrahedron"
|
18
|
+
|
19
|
+
def __repr__(self):
|
20
|
+
if self.Index > -1:
|
21
|
+
return ('f' + str(self.Index)
|
22
|
+
+ ' (' + self.IntOrBdry + ')')
|
23
|
+
else:
|
24
|
+
return '< floating face' + str(id(self)) + ' >'
|
25
|
+
|
26
|
+
def erase(self):
|
27
|
+
for corner in self.Corners:
|
28
|
+
corner.Tetrahedron.Class[corner.Subsimplex] = None
|
29
|
+
self.Index = -1
|
30
|
+
|
31
|
+
def bdry_arrow(self):
|
32
|
+
if self.IntOrBdry != 'bdry':
|
33
|
+
return None
|
34
|
+
face = self.Corners[0].Subsimplex
|
35
|
+
tet = self.Corners[0].Tetrahedron
|
36
|
+
edge = PickAnEdge[face]
|
37
|
+
return Arrow(edge, face, tet)
|
@@ -0,0 +1,211 @@
|
|
1
|
+
# t3m - software for studying triangulated 3-manifolds
|
2
|
+
# Copyright (C) 2002 Marc Culler, Nathan Dunfield and others
|
3
|
+
#
|
4
|
+
# This program is distributed under the terms of the
|
5
|
+
# GNU General Public License, version 2 or later, as published by
|
6
|
+
# the Free Software Foundation. See the file GPL.txt for details.
|
7
|
+
|
8
|
+
from .arrow import eArrow
|
9
|
+
from .simplex import *
|
10
|
+
from .tetrahedron import Tetrahedron
|
11
|
+
import re
|
12
|
+
|
13
|
+
# Nathan's code for importing and exporting snappea files.
|
14
|
+
# Converts a SnapPea file to MComplex. Doesn't really use all the
|
15
|
+
# structure of the SnapPea file as it relies only on the fact that the
|
16
|
+
# gluing data for the ith pair of tetrahedra is given by the ith pair
|
17
|
+
# of lines like:
|
18
|
+
#
|
19
|
+
# 2 5 1 34
|
20
|
+
# 3120 0321 0132 0132
|
21
|
+
|
22
|
+
|
23
|
+
def read_SnapPea_file(file_name=None, data=None):
|
24
|
+
if data is None:
|
25
|
+
data = open(file_name).read().decode('ascii')
|
26
|
+
count = 0
|
27
|
+
|
28
|
+
neighbors_match = r"^\s*(\d+)\s+(\d+)\s+(\d+)\s+(\d+)\s*$"
|
29
|
+
perm_match = r"\s*([0123]{4,4})\s+([0123]{4,4})\s+([0123]{4,4})\s+([0123]{4,4})\s*$"
|
30
|
+
snappea_re = re.compile(neighbors_match + perm_match, re.MULTILINE)
|
31
|
+
|
32
|
+
fake_tets = []
|
33
|
+
|
34
|
+
curr_poss = 0
|
35
|
+
while 1:
|
36
|
+
m = snappea_re.search(data, curr_poss)
|
37
|
+
if not m:
|
38
|
+
break
|
39
|
+
else:
|
40
|
+
neighbors = [int(g) for g in m.group(1,2,3,4)]
|
41
|
+
perms = []
|
42
|
+
for perm in m.group(5,6,7,8):
|
43
|
+
perm = [int(p) for p in [perm[0], perm[1], perm[2], perm[3]]]
|
44
|
+
perms.append(perm)
|
45
|
+
fake_tets.append( (neighbors, perms) )
|
46
|
+
curr_poss = m.end(8)
|
47
|
+
return fake_tets
|
48
|
+
|
49
|
+
# ------------End function SnapPea to Mcomplex--------------------
|
50
|
+
|
51
|
+
|
52
|
+
# Exports an Mcomplex in SnapPea 2.0 format.
|
53
|
+
# ASSUMES THAT THE MANIFOLD IS ORIENTABLE AND THAT THE LINK OF
|
54
|
+
# ANY VERTEX HAS GENUS AT MOST ONE.
|
55
|
+
|
56
|
+
def write_SnapPea_file(mcomplex, fileobject):
|
57
|
+
out = fileobject.write
|
58
|
+
if hasattr(fileobject, 'name'):
|
59
|
+
name = fileobject.name
|
60
|
+
else:
|
61
|
+
name = 'untitled'
|
62
|
+
|
63
|
+
out("% Triangulation\n\n" + name + "\nnot_attempted 0.0\nunknown_orientability\nCS_unknown\n\n")
|
64
|
+
|
65
|
+
torus_cusps = []
|
66
|
+
for vertex in mcomplex.Vertices:
|
67
|
+
g = vertex.link_genus()
|
68
|
+
if g > 1:
|
69
|
+
raise ValueError("Link of vertex has genus more than 1.")
|
70
|
+
if g == 1:
|
71
|
+
torus_cusps.append(vertex)
|
72
|
+
|
73
|
+
# All torus cusps are unfilled
|
74
|
+
|
75
|
+
out("%d 0\n" % len(torus_cusps))
|
76
|
+
for i in torus_cusps:
|
77
|
+
out( " torus 0.000000000000 0.000000000000\n" )
|
78
|
+
|
79
|
+
out("\n")
|
80
|
+
|
81
|
+
# The num of tetrahedra
|
82
|
+
|
83
|
+
out("%d\n" % len(mcomplex))
|
84
|
+
|
85
|
+
# Output the tetraheda themselves.
|
86
|
+
|
87
|
+
for tet in mcomplex.Tetrahedra:
|
88
|
+
for face in TwoSubsimplices:
|
89
|
+
out(" %d" % mcomplex.Tetrahedra.index( tet.Neighbor[face]))
|
90
|
+
out("\n")
|
91
|
+
for face in TwoSubsimplices:
|
92
|
+
out(" %d%d%d%d" % tet.Gluing[face].tuple())
|
93
|
+
|
94
|
+
out("\n")
|
95
|
+
for vert in ZeroSubsimplices:
|
96
|
+
vertex = tet.Class[vert]
|
97
|
+
if vertex.link_genus() == 1:
|
98
|
+
out("%d " % torus_cusps.index(vertex))
|
99
|
+
else:
|
100
|
+
out("-1 ")
|
101
|
+
out("\n")
|
102
|
+
if hasattr(tet, 'PeripheralCurves'):
|
103
|
+
for curve in tet.PeripheralCurves:
|
104
|
+
for sheet in curve:
|
105
|
+
for v in ZeroSubsimplices:
|
106
|
+
for f in TwoSubsimplices:
|
107
|
+
out("%d " % sheet[v][f])
|
108
|
+
if v == V3:
|
109
|
+
out("\n")
|
110
|
+
else:
|
111
|
+
out(" ")
|
112
|
+
else:
|
113
|
+
for i in range(4):
|
114
|
+
out("0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0\n")
|
115
|
+
out("0.0 0.0\n\n")
|
116
|
+
|
117
|
+
|
118
|
+
# Nathan's code for importing and exporting geo files.
|
119
|
+
#
|
120
|
+
# converts Casson's u, v, w, x into 0, 1, 2, 3
|
121
|
+
|
122
|
+
conv = {"u" : V0, "v" : V1, "w" : V2, "x" : V3}
|
123
|
+
conv_back = {V0: "u", V1 : "v", V2 : "w", V3: "x"}
|
124
|
+
|
125
|
+
# Geo saves edges in the form "5ux". This function returns
|
126
|
+
# (tet_num, starting_vertex, ending_vertex). Because Casson
|
127
|
+
# starts his indexing of tets at 1 and Jeff starts at 0,
|
128
|
+
# we subtract 1.
|
129
|
+
|
130
|
+
|
131
|
+
def read_edge(edge):
|
132
|
+
m = re.match("([0-9]+)([uvwx])([uvwx])", edge)
|
133
|
+
return (int(m.group(1)) - 1, conv[m.group(2)], conv[m.group(3)])
|
134
|
+
|
135
|
+
# Geo stores manifolds by storing the link around each edge. This
|
136
|
+
# function takes two successive edges in the link and glues the
|
137
|
+
# corresponding tetrahedra together.
|
138
|
+
|
139
|
+
|
140
|
+
def read_geo_file(file_name, num_tet=None):
|
141
|
+
data = open(file_name).readlines()
|
142
|
+
if num_tet is None:
|
143
|
+
num_tet = len(data) - 2
|
144
|
+
tets = []
|
145
|
+
for i in range(num_tet):
|
146
|
+
tets.append(Tetrahedron())
|
147
|
+
|
148
|
+
for line in data[1 : ]:
|
149
|
+
line = line.decode('ascii')
|
150
|
+
cycle = re.split(r"\s+", line[ : -1])[1 : ]
|
151
|
+
for i in range(len(cycle)):
|
152
|
+
t1, v1, v2 = read_edge(cycle[i])
|
153
|
+
t2, w1, w2 = read_edge(cycle[(i+1) % len(cycle)]) # Yes, that's w2, w1
|
154
|
+
a = eArrow(tets[t1], v1, v2)
|
155
|
+
b = eArrow(tets[t2], w1, w2)
|
156
|
+
a.glue(b)
|
157
|
+
|
158
|
+
return Mcomplex(tets)
|
159
|
+
|
160
|
+
# ---------Code to go from Mcomplex to Geo---------------------
|
161
|
+
|
162
|
+
|
163
|
+
def write_geo_file(mcomplex, fileobject):
|
164
|
+
out = fileobject.write
|
165
|
+
out("k\n")
|
166
|
+
i = 1
|
167
|
+
for edge in mcomplex.Edges:
|
168
|
+
tet = edge.Corners[0].Tetrahedron
|
169
|
+
edge_name = edge.Corners[0].Subsimplex
|
170
|
+
init = Head[edge_name]
|
171
|
+
fin = Tail[edge_name]
|
172
|
+
a = eArrow(tet, init, fin).opposite()
|
173
|
+
b = a.copy()
|
174
|
+
out("%d\t%d%s%s " % (i, mcomplex.Tetrahedra.index(b.Tetrahedron) + 1,
|
175
|
+
conv_back[b.tail()], conv_back[b.head()]))
|
176
|
+
b.next()
|
177
|
+
while b != a:
|
178
|
+
out("%d%s%s " % (mcomplex.Tetrahedra.index(b.Tetrahedron) + 1,
|
179
|
+
conv_back[b.tail()], conv_back[b.head()]))
|
180
|
+
b.next()
|
181
|
+
|
182
|
+
i = i + 1
|
183
|
+
out("\n")
|
184
|
+
|
185
|
+
|
186
|
+
# writing a file for Matveev's program Spine
|
187
|
+
|
188
|
+
def write_spine_file(mcomplex, fileobject):
|
189
|
+
out = fileobject.write
|
190
|
+
for edge in mcomplex.Edges:
|
191
|
+
n = edge.valence()
|
192
|
+
A = edge.get_arrow()
|
193
|
+
tets, global_faces, local_faces, back_local_faces = [], [], [], []
|
194
|
+
for i in range(n):
|
195
|
+
tets.append(A.Tetrahedron.Index + 1)
|
196
|
+
global_faces.append(A.Tetrahedron.Class[A.Face].Index + 1)
|
197
|
+
local_faces.append(A.Face)
|
198
|
+
back_local_faces.append(comp(A.head()))
|
199
|
+
A.next()
|
200
|
+
|
201
|
+
signs = [1 if (tets[i], local_faces[i]) < (tets[(i + 1) % n], back_local_faces[(i + 1) % n]) else -1 for i in range(n)]
|
202
|
+
ans = repr([signs[i]*global_faces[i] for i in range(n)])[1:-1].replace(",", "")
|
203
|
+
out(ans + "\n")
|
204
|
+
|
205
|
+
|
206
|
+
__all__ = ('read_SnapPea_file',
|
207
|
+
'write_SnapPea_file',
|
208
|
+
'read_geo_file',
|
209
|
+
'write_geo_file',
|
210
|
+
'write_spine_file',
|
211
|
+
)
|