snappy 3.2__cp310-cp310-macosx_10_12_x86_64.whl

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  1. snappy/CyOpenGL.cpython-310-darwin.so +0 -0
  2. snappy/SnapPy.cpython-310-darwin.so +0 -0
  3. snappy/SnapPy.ico +0 -0
  4. snappy/SnapPy.png +0 -0
  5. snappy/SnapPyHP.cpython-310-darwin.so +0 -0
  6. snappy/__init__.py +760 -0
  7. snappy/app.py +605 -0
  8. snappy/app_menus.py +372 -0
  9. snappy/browser.py +998 -0
  10. snappy/cache.py +25 -0
  11. snappy/canonical.py +249 -0
  12. snappy/cusps/__init__.py +38 -0
  13. snappy/cusps/cusp_area_matrix.py +101 -0
  14. snappy/cusps/cusp_areas_from_matrix.py +173 -0
  15. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  16. snappy/cusps/test.py +21 -0
  17. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  18. snappy/database.py +454 -0
  19. snappy/db_utilities.py +79 -0
  20. snappy/decorated_isosig.py +710 -0
  21. snappy/dev/__init__.py +0 -0
  22. snappy/dev/extended_ptolemy/__init__.py +8 -0
  23. snappy/dev/extended_ptolemy/closed.py +106 -0
  24. snappy/dev/extended_ptolemy/complexVolumesClosed.py +149 -0
  25. snappy/dev/extended_ptolemy/direct.py +42 -0
  26. snappy/dev/extended_ptolemy/extended.py +406 -0
  27. snappy/dev/extended_ptolemy/giac_helper.py +43 -0
  28. snappy/dev/extended_ptolemy/giac_rur.py +129 -0
  29. snappy/dev/extended_ptolemy/gluing.py +46 -0
  30. snappy/dev/extended_ptolemy/phc_wrapper.py +220 -0
  31. snappy/dev/extended_ptolemy/printMatrices.py +70 -0
  32. snappy/dev/vericlosed/__init__.py +1 -0
  33. snappy/dev/vericlosed/computeApproxHyperbolicStructureNew.py +159 -0
  34. snappy/dev/vericlosed/computeApproxHyperbolicStructureOrb.py +90 -0
  35. snappy/dev/vericlosed/computeVerifiedHyperbolicStructure.py +111 -0
  36. snappy/dev/vericlosed/gimbalLoopFinder.py +130 -0
  37. snappy/dev/vericlosed/hyperbolicStructure.py +313 -0
  38. snappy/dev/vericlosed/krawczykCertifiedEdgeLengthsEngine.py +165 -0
  39. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +122 -0
  40. snappy/dev/vericlosed/orb/__init__.py +1 -0
  41. snappy/dev/vericlosed/orb/orb_solution_for_snappea_finite_triangulation_mac +0 -0
  42. snappy/dev/vericlosed/parseVertexGramMatrixFile.py +47 -0
  43. snappy/dev/vericlosed/polishApproxHyperbolicStructure.py +61 -0
  44. snappy/dev/vericlosed/test.py +54 -0
  45. snappy/dev/vericlosed/truncatedComplex.py +176 -0
  46. snappy/dev/vericlosed/verificationError.py +58 -0
  47. snappy/dev/vericlosed/verifyHyperbolicStructureEngine.py +177 -0
  48. snappy/doc/_images/SnapPy-196.png +0 -0
  49. snappy/doc/_images/geodesics.jpg +0 -0
  50. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  51. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  52. snappy/doc/_images/mac.png +0 -0
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  56. snappy/doc/_images/ubuntu.png +0 -0
  57. snappy/doc/_images/win7.png +0 -0
  58. snappy/doc/_sources/additional_classes.rst.txt +40 -0
  59. snappy/doc/_sources/bugs.rst.txt +14 -0
  60. snappy/doc/_sources/censuses.rst.txt +51 -0
  61. snappy/doc/_sources/credits.rst.txt +75 -0
  62. snappy/doc/_sources/development.rst.txt +259 -0
  63. snappy/doc/_sources/index.rst.txt +182 -0
  64. snappy/doc/_sources/installing.rst.txt +247 -0
  65. snappy/doc/_sources/manifold.rst.txt +6 -0
  66. snappy/doc/_sources/manifoldhp.rst.txt +46 -0
  67. snappy/doc/_sources/news.rst.txt +355 -0
  68. snappy/doc/_sources/other.rst.txt +25 -0
  69. snappy/doc/_sources/platonic_census.rst.txt +20 -0
  70. snappy/doc/_sources/plink.rst.txt +102 -0
  71. snappy/doc/_sources/ptolemy.rst.txt +66 -0
  72. snappy/doc/_sources/ptolemy_classes.rst.txt +42 -0
  73. snappy/doc/_sources/ptolemy_examples1.rst.txt +298 -0
  74. snappy/doc/_sources/ptolemy_examples2.rst.txt +363 -0
  75. snappy/doc/_sources/ptolemy_examples3.rst.txt +301 -0
  76. snappy/doc/_sources/ptolemy_examples4.rst.txt +61 -0
  77. snappy/doc/_sources/ptolemy_prelim.rst.txt +105 -0
  78. snappy/doc/_sources/screenshots.rst.txt +21 -0
  79. snappy/doc/_sources/snap.rst.txt +87 -0
  80. snappy/doc/_sources/snappy.rst.txt +28 -0
  81. snappy/doc/_sources/spherogram.rst.txt +103 -0
  82. snappy/doc/_sources/todo.rst.txt +47 -0
  83. snappy/doc/_sources/triangulation.rst.txt +11 -0
  84. snappy/doc/_sources/tutorial.rst.txt +49 -0
  85. snappy/doc/_sources/verify.rst.txt +210 -0
  86. snappy/doc/_sources/verify_internals.rst.txt +79 -0
  87. snappy/doc/_static/SnapPy-horizontal-128.png +0 -0
  88. snappy/doc/_static/SnapPy.ico +0 -0
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  153. snappy/doc/development.html +384 -0
  154. snappy/doc/genindex.html +1331 -0
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  162. snappy/doc/platonic_census.html +375 -0
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  166. snappy/doc/ptolemy_examples1.html +409 -0
  167. snappy/doc/ptolemy_examples2.html +471 -0
  168. snappy/doc/ptolemy_examples3.html +414 -0
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  171. snappy/doc/py-modindex.html +165 -0
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  179. snappy/doc/triangulation.html +1584 -0
  180. snappy/doc/tutorial.html +159 -0
  181. snappy/doc/verify.html +330 -0
  182. snappy/doc/verify_internals.html +1235 -0
  183. snappy/drilling/__init__.py +456 -0
  184. snappy/drilling/barycentric.py +103 -0
  185. snappy/drilling/constants.py +5 -0
  186. snappy/drilling/crush.py +270 -0
  187. snappy/drilling/cusps.py +125 -0
  188. snappy/drilling/debug.py +242 -0
  189. snappy/drilling/epsilons.py +6 -0
  190. snappy/drilling/exceptions.py +55 -0
  191. snappy/drilling/moves.py +620 -0
  192. snappy/drilling/peripheral_curves.py +210 -0
  193. snappy/drilling/perturb.py +188 -0
  194. snappy/drilling/shorten.py +36 -0
  195. snappy/drilling/subdivide.py +274 -0
  196. snappy/drilling/test.py +23 -0
  197. snappy/drilling/test_cases.py +126 -0
  198. snappy/drilling/tracing.py +351 -0
  199. snappy/exceptions.py +26 -0
  200. snappy/export_stl.py +120 -0
  201. snappy/exterior_to_link/__init__.py +2 -0
  202. snappy/exterior_to_link/barycentric_geometry.py +463 -0
  203. snappy/exterior_to_link/exceptions.py +6 -0
  204. snappy/exterior_to_link/geodesic_map.json +14408 -0
  205. snappy/exterior_to_link/hyp_utils.py +112 -0
  206. snappy/exterior_to_link/link_projection.py +323 -0
  207. snappy/exterior_to_link/main.py +197 -0
  208. snappy/exterior_to_link/mcomplex_with_expansion.py +261 -0
  209. snappy/exterior_to_link/mcomplex_with_link.py +687 -0
  210. snappy/exterior_to_link/mcomplex_with_memory.py +162 -0
  211. snappy/exterior_to_link/pl_utils.py +491 -0
  212. snappy/exterior_to_link/put_in_S3.py +156 -0
  213. snappy/exterior_to_link/rational_linear_algebra.py +123 -0
  214. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +135 -0
  215. snappy/exterior_to_link/simplify_to_base_tri.py +114 -0
  216. snappy/exterior_to_link/stored_moves.py +475 -0
  217. snappy/exterior_to_link/test.py +31 -0
  218. snappy/filedialog.py +28 -0
  219. snappy/geometric_structure/__init__.py +212 -0
  220. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  221. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  222. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  223. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  224. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  225. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  226. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  227. snappy/geometric_structure/geodesic/__init__.py +0 -0
  228. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  229. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  230. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  231. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  232. snappy/geometric_structure/geodesic/constants.py +6 -0
  233. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  234. snappy/geometric_structure/geodesic/fixed_points.py +93 -0
  235. snappy/geometric_structure/geodesic/geodesic_start_point_info.py +435 -0
  236. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  237. snappy/geometric_structure/geodesic/line.py +30 -0
  238. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  239. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  240. snappy/geometric_structure/test.py +22 -0
  241. snappy/gui.py +121 -0
  242. snappy/horoviewer.py +443 -0
  243. snappy/hyperboloid/__init__.py +212 -0
  244. snappy/hyperboloid/distances.py +245 -0
  245. snappy/hyperboloid/horoball.py +19 -0
  246. snappy/hyperboloid/line.py +35 -0
  247. snappy/hyperboloid/point.py +9 -0
  248. snappy/hyperboloid/triangle.py +29 -0
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  250. snappy/infowindow.py +65 -0
  251. snappy/isometry_signature.py +382 -0
  252. snappy/len_spec/__init__.py +596 -0
  253. snappy/len_spec/geodesic_info.py +110 -0
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  255. snappy/len_spec/geodesic_piece.py +143 -0
  256. snappy/len_spec/geometric_structure.py +182 -0
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  262. snappy/len_spec/tile.py +275 -0
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  264. snappy/manifolds/HTWKnots/alternating.gz +0 -0
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  277. snappy/ptolemy/fieldExtensions.py +153 -0
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  361. snappy/raytracing/additional_horospheres.py +64 -0
  362. snappy/raytracing/additional_len_spec_choices.py +63 -0
  363. snappy/raytracing/cohomology_fractal.py +197 -0
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  367. snappy/raytracing/geodesic_tube_info.py +174 -0
  368. snappy/raytracing/geodesics.py +246 -0
  369. snappy/raytracing/geodesics_window.py +258 -0
  370. snappy/raytracing/gui_utilities.py +293 -0
  371. snappy/raytracing/hyperboloid_navigation.py +556 -0
  372. snappy/raytracing/hyperboloid_utilities.py +234 -0
  373. snappy/raytracing/ideal_raytracing_data.py +592 -0
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  384. snappy/raytracing/upper_halfspace_utilities.py +98 -0
  385. snappy/raytracing/view_scale_controller.py +98 -0
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  394. snappy/shell.py +53 -0
  395. snappy/snap/__init__.py +114 -0
  396. snappy/snap/character_varieties.py +375 -0
  397. snappy/snap/find_field.py +372 -0
  398. snappy/snap/fundamental_polyhedron.py +569 -0
  399. snappy/snap/generators.py +39 -0
  400. snappy/snap/interval_reps.py +81 -0
  401. snappy/snap/kernel_structures.py +128 -0
  402. snappy/snap/mcomplex_base.py +18 -0
  403. snappy/snap/nsagetools.py +702 -0
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  406. snappy/snap/peripheral/link.py +127 -0
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  410. snappy/snap/polished_reps.py +335 -0
  411. snappy/snap/shapes.py +152 -0
  412. snappy/snap/slice_obs_HKL.py +668 -0
  413. snappy/snap/t3mlite/__init__.py +2 -0
  414. snappy/snap/t3mlite/arrow.py +243 -0
  415. snappy/snap/t3mlite/corner.py +22 -0
  416. snappy/snap/t3mlite/edge.py +172 -0
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  419. snappy/snap/t3mlite/homology.py +53 -0
  420. snappy/snap/t3mlite/linalg.py +419 -0
  421. snappy/snap/t3mlite/mcomplex.py +1499 -0
  422. snappy/snap/t3mlite/perm4.py +320 -0
  423. snappy/snap/t3mlite/setup.py +12 -0
  424. snappy/snap/t3mlite/simplex.py +199 -0
  425. snappy/snap/t3mlite/spun.py +297 -0
  426. snappy/snap/t3mlite/surface.py +519 -0
  427. snappy/snap/t3mlite/test.py +20 -0
  428. snappy/snap/t3mlite/test_vs_regina.py +86 -0
  429. snappy/snap/t3mlite/tetrahedron.py +109 -0
  430. snappy/snap/t3mlite/vertex.py +42 -0
  431. snappy/snap/test.py +134 -0
  432. snappy/snap/utilities.py +288 -0
  433. snappy/test.py +209 -0
  434. snappy/test_cases.py +263 -0
  435. snappy/testing.py +131 -0
  436. snappy/tiling/__init__.py +2 -0
  437. snappy/tiling/canonical_key_dict.py +59 -0
  438. snappy/tiling/dict_based_set.py +79 -0
  439. snappy/tiling/floor.py +49 -0
  440. snappy/tiling/hyperboloid_dict.py +54 -0
  441. snappy/tiling/iter_utils.py +78 -0
  442. snappy/tiling/lifted_tetrahedron.py +22 -0
  443. snappy/tiling/lifted_tetrahedron_set.py +54 -0
  444. snappy/tiling/real_hash_dict.py +164 -0
  445. snappy/tiling/test.py +23 -0
  446. snappy/tiling/tile.py +215 -0
  447. snappy/tiling/triangle.py +33 -0
  448. snappy/tkterminal.py +920 -0
  449. snappy/twister/__init__.py +20 -0
  450. snappy/twister/main.py +646 -0
  451. snappy/twister/surfaces/S_0_1 +3 -0
  452. snappy/twister/surfaces/S_0_2 +3 -0
  453. snappy/twister/surfaces/S_0_4 +7 -0
  454. snappy/twister/surfaces/S_0_4_Lantern +8 -0
  455. snappy/twister/surfaces/S_1 +3 -0
  456. snappy/twister/surfaces/S_1_1 +4 -0
  457. snappy/twister/surfaces/S_1_2 +5 -0
  458. snappy/twister/surfaces/S_1_2_5 +6 -0
  459. snappy/twister/surfaces/S_2 +6 -0
  460. snappy/twister/surfaces/S_2_1 +8 -0
  461. snappy/twister/surfaces/S_2_heeg +10 -0
  462. snappy/twister/surfaces/S_3 +8 -0
  463. snappy/twister/surfaces/S_3_1 +10 -0
  464. snappy/twister/surfaces/S_4_1 +12 -0
  465. snappy/twister/surfaces/S_5_1 +14 -0
  466. snappy/twister/surfaces/heeg_fig8 +9 -0
  467. snappy/twister/twister_core.cpython-310-darwin.so +0 -0
  468. snappy/upper_halfspace/__init__.py +146 -0
  469. snappy/upper_halfspace/ideal_point.py +26 -0
  470. snappy/verify/__init__.py +13 -0
  471. snappy/verify/canonical.py +542 -0
  472. snappy/verify/complex_volume/__init__.py +18 -0
  473. snappy/verify/complex_volume/adjust_torsion.py +86 -0
  474. snappy/verify/complex_volume/closed.py +168 -0
  475. snappy/verify/complex_volume/compute_ptolemys.py +90 -0
  476. snappy/verify/complex_volume/cusped.py +56 -0
  477. snappy/verify/complex_volume/extended_bloch.py +201 -0
  478. snappy/verify/cusp_translations.py +85 -0
  479. snappy/verify/edge_equations.py +80 -0
  480. snappy/verify/exceptions.py +254 -0
  481. snappy/verify/hyperbolicity.py +224 -0
  482. snappy/verify/interval_newton_shapes_engine.py +523 -0
  483. snappy/verify/interval_tree.py +400 -0
  484. snappy/verify/krawczyk_shapes_engine.py +518 -0
  485. snappy/verify/maximal_cusp_area_matrix/__init__.py +46 -0
  486. snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +419 -0
  487. snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +153 -0
  488. snappy/verify/real_algebra.py +286 -0
  489. snappy/verify/shapes.py +25 -0
  490. snappy/verify/short_slopes.py +200 -0
  491. snappy/verify/square_extensions.py +1005 -0
  492. snappy/verify/test.py +78 -0
  493. snappy/verify/upper_halfspace/__init__.py +9 -0
  494. snappy/verify/upper_halfspace/extended_matrix.py +100 -0
  495. snappy/verify/upper_halfspace/finite_point.py +283 -0
  496. snappy/verify/upper_halfspace/ideal_point.py +426 -0
  497. snappy/verify/volume.py +128 -0
  498. snappy/version.py +2 -0
  499. snappy-3.2.dist-info/METADATA +58 -0
  500. snappy-3.2.dist-info/RECORD +503 -0
  501. snappy-3.2.dist-info/WHEEL +5 -0
  502. snappy-3.2.dist-info/entry_points.txt +2 -0
  503. snappy-3.2.dist-info/top_level.txt +28 -0
@@ -0,0 +1,392 @@
1
+ from .polynomial import Polynomial
2
+ from .ptolemyVarietyPrimeIdealGroebnerBasis import PtolemyVarietyPrimeIdealGroebnerBasis
3
+ from . import processFileBase
4
+ from . import utilities
5
+ import snappy
6
+
7
+ import re
8
+ import sys
9
+ import tempfile
10
+ import subprocess
11
+ import shutil
12
+
13
+ ###############################################################################
14
+ # functions
15
+
16
+
17
+ def decomposition_from_magma(text):
18
+
19
+ py_eval = processFileBase.get_py_eval(text)
20
+ manifold_thunk = processFileBase.get_manifold_thunk(text)
21
+
22
+ untyped_decomposition = processFileBase.find_section(
23
+ text, "IDEAL=DECOMPOSITION")
24
+ primary_decomposition = processFileBase.find_section(
25
+ text, "PRIMARY=DECOMPOSITION")
26
+ radical_decomposition = processFileBase.find_section(
27
+ text, "RADICAL=DECOMPOSITION")
28
+
29
+ if untyped_decomposition:
30
+ decomposition = untyped_decomposition[0]
31
+ elif primary_decomposition:
32
+ decomposition = primary_decomposition[0]
33
+ elif radical_decomposition:
34
+ decomposition = radical_decomposition[0]
35
+ else:
36
+ raise ValueError(
37
+ "File not recognized as magma output "
38
+ "(missing primary decomposition or radical decomposition)")
39
+
40
+ # Remove "\" at the wrapped lines
41
+ decomposition = utilities.join_long_lines_deleting_whitespace(
42
+ decomposition)
43
+
44
+ # Remove outer square brackets
45
+ decomposition = processFileBase.remove_outer_square_brackets(decomposition)
46
+
47
+ decomposition_comps = [ c.strip() for c in decomposition.split(']') ]
48
+ decomposition_components = [ c + ']' for c in decomposition_comps if c ]
49
+
50
+ free_variables_section = processFileBase.find_section(
51
+ text, "FREE=VARIABLES=IN=COMPONENTS")
52
+ if free_variables_section:
53
+ free_variables = eval(free_variables_section[0])
54
+ else:
55
+ free_variables = len(decomposition_components) * [None]
56
+
57
+ witnesses_section = processFileBase.find_section(
58
+ text, "WITNESSES=FOR=COMPONENTS")
59
+ if witnesses_section:
60
+ witnesses_sections = processFileBase.find_section(
61
+ witnesses_section[0], "WITNESSES")
62
+ else:
63
+ witnesses_sections = len(decomposition_components) * [""]
64
+
65
+ genuses_section = processFileBase.find_section(
66
+ text, "GENUSES=FOR=COMPONENTS")
67
+ if genuses_section:
68
+ genuses_sections = processFileBase.find_section(
69
+ genuses_section[0], "GENUS=FOR=COMPONENT")
70
+ else:
71
+ genuses_sections = len(decomposition_components) * [""]
72
+
73
+ def process_match(i, comp, free_vars, witnesses_txt, genus_txt):
74
+
75
+ if i != 0:
76
+ if not comp[0] == ',':
77
+ raise ValueError("Parsing decomposition, expected "
78
+ "separating comma.")
79
+ comp = comp[1:].strip()
80
+
81
+ if genus_txt.strip():
82
+ genus = int(genus_txt)
83
+ else:
84
+ genus = None
85
+
86
+ witnesses_txts = processFileBase.find_section(
87
+ witnesses_txt, "WITNESS")
88
+
89
+ witnesses = [
90
+ _parse_ideal_groebner_basis(
91
+ utilities.join_long_lines_deleting_whitespace(t).strip(),
92
+ py_eval, manifold_thunk, free_vars, [], genus)
93
+ for t in witnesses_txts ]
94
+
95
+ return _parse_ideal_groebner_basis(comp, py_eval, manifold_thunk,
96
+ free_vars, witnesses, genus)
97
+
98
+ return utilities.MethodMappingList(
99
+ [ process_match(i, comp, free_vars, witnesses, genus_txt)
100
+ for i, (comp, free_vars, witnesses, genus_txt)
101
+ in enumerate(zip(decomposition_components,
102
+ free_variables,
103
+ witnesses_sections,
104
+ genuses_sections)) ])
105
+
106
+
107
+ def _parse_ideal_groebner_basis(text, py_eval, manifold_thunk,
108
+ free_vars, witnesses, genus):
109
+ match = re.match(
110
+ r"Ideal of Polynomial ring of rank.*?\n"
111
+ r"\s*?(Order:\s*?(.*?)|(.*?)\s*?Order)\n"
112
+ r"\s*?Variables:(.*?\n)+"
113
+ r".*?Dimension (\d+).*?\s*([^,]*[Pp]rime)?.*?\n"
114
+ r"(\s*?Size of variety over algebraically closed field: (\d+).*?\n)?"
115
+ r"\s*Groebner basis:\n"
116
+ r"\s*?\[([^\[\]]*)\]$",
117
+ text)
118
+
119
+ if not match:
120
+ raise ValueError("Parsing error in component of "
121
+ "decomposition: %s" % text)
122
+
123
+ (
124
+ tot_order_str, post_order_str, pre_order_str,
125
+ var_str,
126
+ dimension_str, prime_str,
127
+ variety_str, size_str,
128
+
129
+ poly_strs ) = match.groups()
130
+
131
+ dimension = int(dimension_str)
132
+
133
+ if dimension == 0:
134
+ polys = [ Polynomial.parse_string(p)
135
+ for p in poly_strs.replace('\n',' ').split(',') ]
136
+ else:
137
+ polys = []
138
+
139
+ order_str = post_order_str if post_order_str else pre_order_str
140
+ if not order_str:
141
+ raise ValueError("Could not parse order in decomposition")
142
+
143
+ if order_str.strip().lower() == 'lexicographical':
144
+ term_order = 'lex'
145
+ else:
146
+ term_order = 'other'
147
+
148
+ is_prime = (prime_str is None) or (prime_str.lower() == 'prime')
149
+
150
+ return PtolemyVarietyPrimeIdealGroebnerBasis(
151
+ polys=polys,
152
+ term_order=term_order,
153
+ size=processFileBase.parse_int_or_empty(size_str),
154
+ dimension=dimension,
155
+ is_prime=is_prime,
156
+ free_variables=free_vars,
157
+ py_eval=py_eval,
158
+ manifold_thunk=manifold_thunk,
159
+ witnesses=witnesses,
160
+ genus=genus)
161
+
162
+
163
+ def triangulation_from_magma(text):
164
+ """
165
+ Reads the output from a magma computation and extracts the manifold for
166
+ which this output contains solutions.
167
+ """
168
+ return processFileBase.get_manifold(text)
169
+
170
+
171
+ def triangulation_from_magma_file(filename):
172
+ """
173
+ Reads the output from a magma computation from the file with the given
174
+ filename and extracts the manifold for which the file contains solutions.
175
+ """
176
+
177
+ return processFileBase.get_manifold_from_file(filename)
178
+
179
+
180
+ def contains_magma_output(text):
181
+ return ("IDEAL=DECOMPOSITION=BEGINS" in text or
182
+ "PRIMARY=DECOMPOSITION=BEGINS" in text or
183
+ "RADICAL=DECOMPOSITION=BEGINS" in text)
184
+
185
+
186
+ def solutions_from_magma_file(filename, numerical=False):
187
+ """
188
+ Obsolete, use processFileDispatch.parse_solutions_from_file instead.
189
+
190
+ Reads the output from a magma computation from the file with the given
191
+ filename and returns a list of solutions. Also see solutions_from_magma.
192
+ A non-zero dimensional component of the variety is reported as
193
+ NonZeroDimensionalComponent.
194
+ """
195
+
196
+ return solutions_from_magma(open(filename).read(), numerical)
197
+
198
+
199
+ def solutions_from_magma(output, numerical=False):
200
+ """
201
+ Obsolete, use processFileDispatch.parse_solutions instead.
202
+
203
+ Assumes the given string is the output of a magma computation, parses
204
+ it and returns a list of solutions.
205
+ A non-zero dimensional component of the variety is reported as
206
+ NonZeroDimensionalComponent.
207
+ """
208
+
209
+ return decomposition_from_magma(output).solutions(
210
+ numerical=numerical)
211
+
212
+
213
+ def magma_executable():
214
+ for name in ['magma', 'magma.exe']:
215
+ if shutil.which(name):
216
+ return name
217
+ return None
218
+
219
+
220
+ def run_magma(content,
221
+ filename_base, memory_limit, directory, verbose):
222
+ """
223
+ call magma on the given content and
224
+ """
225
+
226
+ magma = magma_executable()
227
+ if magma is None:
228
+ raise ValueError('Sorry, could not find the Magma executable')
229
+
230
+ if directory:
231
+ resolved_dir = directory
232
+ if not resolved_dir[-1] == '/':
233
+ resolved_dir = resolved_dir + '/'
234
+ else:
235
+ resolved_dir = tempfile.mkdtemp() + '/'
236
+
237
+ in_file = resolved_dir + filename_base + '.magma'
238
+ out_file = resolved_dir + filename_base + '.magma_out'
239
+
240
+ if verbose:
241
+ print("Writing to file:", in_file)
242
+
243
+ open(in_file, 'wb').write(content.encode('ascii'))
244
+
245
+ if verbose:
246
+ print("Magma's output in:", out_file)
247
+
248
+ if sys.platform.startswith('win'):
249
+ cmd = 'echo | %s "%s" > "%s"' % (magma, in_file, out_file)
250
+ else:
251
+ cmd = 'ulimit -m %d; echo | %s "%s" > "%s"' % (
252
+ int(memory_limit / 1024), magma, in_file, out_file)
253
+
254
+ if verbose:
255
+ print("Command:", cmd)
256
+ print("Starting magma...")
257
+
258
+ retcode = subprocess.call(cmd, shell=True)
259
+
260
+ result = open(out_file, 'r').read()
261
+
262
+ if verbose:
263
+ print("magma finished.")
264
+ print("Parsing magma result...")
265
+
266
+ return decomposition_from_magma(result)
267
+
268
+ ###############################################################################
269
+ # magma test
270
+
271
+
272
+ _magma_output_for_4_1__sl3 = """
273
+ ==TRIANGULATION=BEGINS==
274
+ % Triangulation
275
+ 4_1
276
+ geometric_solution 2.02988321
277
+ oriented_manifold
278
+ CS_known -0.0000000000000001
279
+
280
+ 1 0
281
+ torus 0.000000000000 0.000000000000
282
+
283
+ 2
284
+ 1 1 1 1
285
+ 0132 1302 1023 2031
286
+ 0 0 0 0
287
+ 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0
288
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
289
+ 0 1 0 -1 -1 0 2 -1 0 -1 0 1 0 1 -1 0
290
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
291
+ 0.500000000000 0.866025403784
292
+
293
+ 0 0 0 0
294
+ 0132 1302 1023 2031
295
+ 0 0 0 0
296
+ 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0
297
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
298
+ 0 1 -2 1 1 0 0 -1 0 1 0 -1 0 -1 1 0
299
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
300
+ 0.500000000000 0.866025403784
301
+
302
+
303
+ ==TRIANGULATION=ENDS==
304
+ PY=EVAL=SECTION=BEGINS=HERE
305
+ {'variable_dict' :
306
+ (lambda d, negation = (lambda x:-x): {
307
+ 'c_1020_0' : d['c_0012_1'],
308
+ 'c_1020_1' : d['1'],
309
+ 'c_0201_0' : d['c_0201_0'],
310
+ 'c_0201_1' : d['c_0201_0'],
311
+ 'c_2100_0' : d['1'],
312
+ 'c_2100_1' : d['c_0012_1'],
313
+ 'c_2010_0' : d['1'],
314
+ 'c_2010_1' : d['c_0012_1'],
315
+ 'c_0102_0' : d['c_0102_0'],
316
+ 'c_0102_1' : d['c_0102_0'],
317
+ 'c_1101_0' : d['c_1101_0'],
318
+ 'c_1101_1' : negation(d['c_1101_0']),
319
+ 'c_1200_0' : d['c_0012_1'],
320
+ 'c_1200_1' : d['1'],
321
+ 'c_1110_0' : negation(d['c_1011_1']),
322
+ 'c_1110_1' : negation(d['c_1011_0']),
323
+ 'c_0120_0' : d['c_0102_0'],
324
+ 'c_0120_1' : d['c_0102_0'],
325
+ 'c_2001_0' : d['c_0201_0'],
326
+ 'c_2001_1' : d['c_0201_0'],
327
+ 'c_0012_0' : d['1'],
328
+ 'c_0012_1' : d['c_0012_1'],
329
+ 'c_0111_0' : d['1'],
330
+ 'c_0111_1' : negation(d['1']),
331
+ 'c_0210_0' : d['c_0201_0'],
332
+ 'c_0210_1' : d['c_0201_0'],
333
+ 'c_1002_0' : d['c_0102_0'],
334
+ 'c_1002_1' : d['c_0102_0'],
335
+ 'c_1011_0' : d['c_1011_0'],
336
+ 'c_1011_1' : d['c_1011_1'],
337
+ 'c_0021_0' : d['c_0012_1'],
338
+ 'c_0021_1' : d['1']})}
339
+ PY=EVAL=SECTION=ENDS=HERE
340
+ PRIMARY=DECOMPOSITION=BEGINS=HERE
341
+ [
342
+ Ideal of Polynomial ring of rank 7 over Rational Field
343
+ Lexicographical Order
344
+ Variables: t, c_0012_1, c_0102_0, c_0201_0, c_1011_0, c_1011_1, c_1101_0
345
+ Dimension 0, Radical, Prime
346
+ Size of variety over algebraically closed field: 2
347
+ Groebner basis:
348
+ [
349
+ t - 3/8*c_1011_1 - 1/2,
350
+ c_0012_1 + 1/2*c_1011_1 + 3/2,
351
+ c_0102_0 + 1/2*c_1011_1 + 1/2,
352
+ c_0201_0 + 1/2*c_1011_1 + 1/2,
353
+ c_1011_0 - c_1011_1 - 3,
354
+ c_1011_1^2 + 3*c_1011_1 + 4,
355
+ c_1101_0 - 1
356
+ ],
357
+ Ideal of Polynomial ring of rank 7 over Rational Field
358
+ Lexicographical Order
359
+ Variables: t, c_0012_1, c_0102_0, c_0201_0, c_1011_0, c_1011_1, c_1101_0
360
+ Dimension 0, Radical, Prime
361
+ Size of variety over algebraically closed field: 2
362
+ Groebner basis:
363
+ [
364
+ t - 1/2*c_1101_0 - 15/8,
365
+ c_0012_1 - 1,
366
+ c_0102_0 + 4/3*c_1101_0 - 2/3,
367
+ c_0201_0 - 4/3*c_1101_0 - 1/3,
368
+ c_1011_0 - 1/3*c_1101_0 - 1/3,
369
+ c_1011_1 + 1/3*c_1101_0 + 1/3,
370
+ c_1101_0^2 - 1/4*c_1101_0 + 1
371
+ ],
372
+ Ideal of Polynomial ring of rank 7 over Rational Field
373
+ Lexicographical Order
374
+ Variables: t, c_0012_1, c_0102_0, c_0201_0, c_1011_0, c_1011_1, c_1101_0
375
+ Dimension 0, Radical, Prime
376
+ Size of variety over algebraically closed field: 2
377
+ Groebner basis:
378
+ [
379
+ t - c_1011_1 - 1,
380
+ c_0012_1 - 1,
381
+ c_0102_0 - c_1011_1,
382
+ c_0201_0 - c_1011_1,
383
+ c_1011_0 + c_1011_1,
384
+ c_1011_1^2 + c_1011_1 + 1,
385
+ c_1101_0 - 1
386
+ ]
387
+ ]
388
+ PRIMARY=DECOMPOSITION=ENDS=HERE
389
+ CPUTIME : 0.020
390
+
391
+ Total time: 0.419 seconds, Total memory usage: 5.62MB
392
+ """
@@ -0,0 +1,150 @@
1
+ import re
2
+
3
+ from .utilities import MethodMappingList
4
+ from .component import NonZeroDimensionalComponent
5
+ from .coordinates import PtolemyCoordinates
6
+ from .rur import RUR
7
+ from . import processFileBase
8
+ from ..pari import pari
9
+
10
+
11
+ def contains_rur(text):
12
+ return 'RUR=DECOMPOSITION=BEGINS' in text
13
+
14
+
15
+ def decomposition_from_rur(text):
16
+
17
+ py_eval = processFileBase.get_py_eval(text)
18
+ manifold_thunk = processFileBase.get_manifold_thunk(text)
19
+
20
+ rursection = processFileBase.find_unique_section(text, "RUR=DECOMPOSITION")
21
+
22
+ rurs = processFileBase.find_section(rursection, "COMPONENT")
23
+
24
+ result = MethodMappingList(
25
+ [ SolutionContainer(
26
+ _process_rur_component(rur, py_eval, manifold_thunk))
27
+ for rur in rurs ])
28
+
29
+ return result
30
+
31
+
32
+ def _process_rur_component(text, py_eval, manifold_thunk):
33
+ lines = text.split('\n')
34
+
35
+ dimension = None
36
+ is_prime = False
37
+ format = None
38
+
39
+ body = ""
40
+ for line in lines:
41
+ m = re.match(r'==(.*):(.*)', line)
42
+ if m:
43
+ key, val = m.groups()
44
+ val = val.strip()
45
+ if key == "DIMENSION":
46
+ dimension = int(val)
47
+ elif key == "IS_PRIME":
48
+ if val == "TRUE":
49
+ is_prime = True
50
+ elif val != "FALSE":
51
+ raise Exception("IS_PRIME needs to be TRUE or FALSE")
52
+ elif key == "FORMAT":
53
+ format = val
54
+ else:
55
+ raise Exception("Unrecognized key %s" % key)
56
+ else:
57
+ body += line + "\n"
58
+
59
+ if dimension is None:
60
+ return NonZeroDimensionalComponent()
61
+ if dimension > 0:
62
+ return NonZeroDimensionalComponent(dimension=dimension)
63
+
64
+ if format is None:
65
+ raise Exception("No format specified")
66
+
67
+ if format == "MAPLE-LIKE":
68
+ d = parse_maple_like_rur(body.strip())
69
+ return PtolemyCoordinates(d, is_numerical=False,
70
+ py_eval_section=py_eval,
71
+ manifold_thunk=manifold_thunk)
72
+ else:
73
+ raise Exception("Unknown format %s" % format)
74
+
75
+
76
+ def parse_maple_like_rur(text):
77
+
78
+ m = re.match(r"(.*?)\s*=\s*0\s*,\s*\{(.*?)\}", text, re.DOTALL)
79
+
80
+ if not m:
81
+ raise Exception("Format not detected")
82
+
83
+ poly_text, assignments_text = m.groups()
84
+ var = _find_var_of_poly(poly_text)
85
+
86
+ poly = pari(poly_text.replace(var, 'x'))
87
+ assignments_text = assignments_text.replace(var, 'x')
88
+
89
+ return dict([_parse_assignment(assignment, poly)
90
+ for assignment in assignments_text.split(',')])
91
+
92
+
93
+ def parse_rs_rur(text, variables):
94
+
95
+ m = re.match(r'\[([^,\]]+),\s*([^,\]]+),\s*\[([^\]]+)\]\s*,\s*\[\s*\]\s*\]',
96
+ text, re.DOTALL)
97
+
98
+ if not m:
99
+ raise Exception("Format not detected")
100
+
101
+ extension_str, denominator_str, numerators_str = m.groups()
102
+
103
+ var = _find_var_of_poly(extension_str)
104
+
105
+ extension = pari(extension_str.replace(var, 'x'))
106
+ denominator = pari(denominator_str.replace(var, 'x'))
107
+ numerators = [ pari(numerator_str.replace(var, 'x'))
108
+ for numerator_str in numerators_str.split(',') ]
109
+
110
+ fracs = [
111
+ RUR( [ ( numerator.Mod(extension), 1),
112
+ (denominator.Mod(extension), -1) ] )
113
+ for numerator in numerators ]
114
+
115
+ return dict(list(zip(variables, fracs)) + [('1', RUR.from_int(1))])
116
+
117
+
118
+ def _find_var_of_poly(text):
119
+ return re.search(r'[_A-Za-z][_A-Za-z0-9]*',text).group(0)
120
+
121
+
122
+ def _parse_assignment(text, poly):
123
+ var, expression = re.match(r'\s*([_A-Za-z][_A-Za-z0-9]*)\s*=\s*(.*)$',
124
+ text).groups()
125
+
126
+ return (
127
+ var,
128
+ RUR.from_pari_fraction_and_number_field(pari(expression), poly))
129
+
130
+
131
+ _test_case = """
132
+ _Z^6-3*_Z^5+3*_Z^4-2*_Z^3+_Z-1 = 0,
133
+ {c_0012_0 = 1, c_0012_2 = _Z^5-3*_Z^4+3*_Z^3-_Z^2-2*_Z+1, c_0111_2 = -_Z*(_Z^4-2*_Z^3+_Z-1), c_1011_0 = -_Z^2*(-1+_Z), c_1101_0 = -_Z*(-1+_Z), c_1101_1 = _Z*(-1+_Z), c_1110_0 = _Z, a = (_Z^3+_Z^2)/(_Z^3+34*_Z^2+3)}
134
+ """
135
+
136
+
137
+ class SolutionContainer():
138
+ def __init__(self, solutions):
139
+ self._solutions = solutions
140
+
141
+ def solutions(self, numerical=False):
142
+ if numerical:
143
+ return self._solutions.numerical()
144
+ else:
145
+ return self._solutions
146
+
147
+ def number_field(self):
148
+ return self._solutions.number_field()
149
+
150
+ # print parse_maple_like_rur(_test_case)
@@ -0,0 +1,102 @@
1
+ from . import matrix
2
+ from .polynomial import Polynomial
3
+ from ..pari import pari
4
+
5
+
6
+ class PtolemyGeneralizedObstructionClass():
7
+ """
8
+ Represents an obstruction cocycle of a PSL(n,C) representation in
9
+ H^2(M,partial M;Z/n).
10
+
11
+ >>> from snappy import Manifold
12
+ >>> M = Manifold("m004")
13
+
14
+ Create an obstruction class, this has to be in the kernel of d^2:
15
+
16
+ >>> c = PtolemyGeneralizedObstructionClass([2,0,0,1])
17
+
18
+ For better accounting, give it an index:
19
+
20
+ >>> c = PtolemyGeneralizedObstructionClass([2,0,0,1], index = 1)
21
+
22
+ Get corresponding ptolemy variety:
23
+
24
+ >>> p = M.ptolemy_variety(N=3, obstruction_class=c)
25
+
26
+ Canonical filename base:
27
+
28
+ >>> p.filename_base()
29
+ 'm004__sl3_c1'
30
+
31
+ Now pick something not in the kernel:
32
+
33
+ >>> c = PtolemyGeneralizedObstructionClass([1,0,0,1])
34
+ >>> p = M.ptolemy_variety(N=3, obstruction_class=c)
35
+ Traceback (most recent call last):
36
+ ...
37
+ AssertionError: PtolemyGeneralizedObstructionClass not in kernel of d2
38
+
39
+ """
40
+
41
+ def __init__(self, H2_class, index=None, N=None, manifold=None):
42
+
43
+ self.H2_class = H2_class
44
+ self._index = index
45
+ self._N = N
46
+ self._manifold = manifold
47
+
48
+ def _checkManifoldAndN(self, manifold, N):
49
+ if self._manifold is not None:
50
+ assert manifold == self._manifold, (
51
+ "PtolemyGeneralizedObstructionClass for wrong manifold")
52
+
53
+ if self._N is not None:
54
+ assert N == self._N, (
55
+ "PtolemyGeneralizedObstructionClass for wrong N")
56
+
57
+ assert len(self.H2_class) == 2 * manifold.num_tetrahedra(), (
58
+ "PtolemyGeneralizedObstructionClass does not match number of "
59
+ "face classes")
60
+
61
+ # compute boundary maps for cellular chain complex
62
+ chain_d3, dummy_rows, dummy_columns = (
63
+ manifold._ptolemy_equations_boundary_map_3())
64
+
65
+ # transpose to compute cohomology
66
+ cochain_d2 = matrix.matrix_transpose(chain_d3)
67
+
68
+ assert matrix.is_vector_zero(
69
+ matrix.vector_modulo(
70
+ matrix.matrix_mult_vector(cochain_d2, self.H2_class),
71
+ N)), ("PtolemyGeneralizedObstructionClass not in kernel of "
72
+ "d2")
73
+
74
+ def _is_non_trivial(self, N):
75
+ for h in self.H2_class:
76
+ if h % N != 0:
77
+ return True
78
+ return False
79
+
80
+ def _get_equation_for_u(self, N):
81
+
82
+ # the information about the root of unity u we use:
83
+ # returns order_of_u, identified_variables, equations
84
+
85
+ if self._is_non_trivial(N):
86
+
87
+ # If we have a non-trivial obstruction class
88
+
89
+ if N == 2:
90
+ # For N == 2, we set u to -1, no extra equations necessary
91
+ return 2, []
92
+
93
+ else:
94
+ # Return the cyclotomic polynomial as extra equation in u
95
+ cyclo = Polynomial.parse_string(str(pari.polcyclo(N, 'u')))
96
+ return N, [cyclo]
97
+ else:
98
+ # If we have the trivial cohomology class, no u returned
99
+ return 1, []
100
+
101
+ def __repr__(self):
102
+ return "PtolemyGeneralizedObstructionClass(%s)" % self.H2_class
@@ -0,0 +1,64 @@
1
+ class PtolemyObstructionClass():
2
+ """
3
+ Represents an obstruction cocycle of a pSL(n,C) representation as
4
+ described in Definition 1.7 of
5
+
6
+ Garoufalidis, Thurston, Zickert
7
+ The Complex Volume of SL(n,C)-Representations of 3-Manifolds
8
+ https://arxiv.org/abs/1111.2828
9
+
10
+ To generate such an obstruction class, call:
11
+
12
+ >>> from snappy import Manifold
13
+ >>> M = Manifold("4_1")
14
+ >>> cs = M.ptolemy_obstruction_classes()
15
+
16
+ Print out the values:
17
+
18
+ >>> for c in cs: print(c)
19
+ PtolemyObstructionClass(s_0_0 - 1, s_1_0 - 1, s_2_0 - 1, s_3_0 - 1, s_0_0 - s_0_1, s_1_0 - s_3_1, s_2_0 - s_2_1, s_3_0 - s_1_1)
20
+ PtolemyObstructionClass(s_0_0 + 1, s_1_0 - 1, s_2_0 - 1, s_3_0 + 1, s_0_0 - s_0_1, s_1_0 - s_3_1, s_2_0 - s_2_1, s_3_0 - s_1_1)
21
+ """
22
+
23
+ def __init__(self, manifold, index, H2_element, explain_basis,
24
+ identified_face_classes):
25
+
26
+ self._manifold = manifold
27
+ self._index = index
28
+ self._H2_element = H2_element
29
+ self._explain_basis = explain_basis
30
+ self._identified_face_classes = identified_face_classes
31
+
32
+ def H2_element_entry_to_identified_variable(entry, variable):
33
+ return ((-1)**entry, 0, variable, 1)
34
+
35
+ self.identified_variables = (
36
+ [H2_element_entry_to_identified_variable(entry, variable)
37
+ for entry, variable in zip(H2_element, explain_basis)] +
38
+ [(+1, 0, var1, var2)
39
+ for sign, power, var1, var2 in self._identified_face_classes])
40
+
41
+ def _checkManifoldAndN(self, manifold, N):
42
+ if self._manifold is not None:
43
+ assert manifold == self._manifold, (
44
+ "PtolemyObstructionClass for wrong manifold")
45
+
46
+ assert N % 2 == 0, (
47
+ "PtolemyObstructionClass only makes sense for even N, "
48
+ "try PtolemyGeneralizedObstructionClass")
49
+
50
+ def __repr__(self):
51
+
52
+ def to_string(i):
53
+ sign, power, var1, var2 = i
54
+ var2 = str(var2)
55
+
56
+ assert sign in [+1, -1]
57
+
58
+ if sign == +1:
59
+ return var1 + " - " + var2
60
+ else:
61
+ return var1 + " + " + var2
62
+
63
+ return "PtolemyObstructionClass(%s)" % ', '.join(
64
+ to_string(i) for i in self.identified_variables)