scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +25 -10
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/audio/README.md +52 -0
- scitex/audio/__init__.py +384 -0
- scitex/audio/__main__.py +129 -0
- scitex/audio/_tts.py +334 -0
- scitex/audio/engines/__init__.py +44 -0
- scitex/audio/engines/base.py +275 -0
- scitex/audio/engines/elevenlabs_engine.py +143 -0
- scitex/audio/engines/gtts_engine.py +162 -0
- scitex/audio/engines/pyttsx3_engine.py +131 -0
- scitex/audio/mcp_server.py +757 -0
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dev/plt/__init__.py +272 -0
- scitex/dev/plt/plot_mpl_axhline.py +28 -0
- scitex/dev/plt/plot_mpl_axhspan.py +28 -0
- scitex/dev/plt/plot_mpl_axvline.py +28 -0
- scitex/dev/plt/plot_mpl_axvspan.py +28 -0
- scitex/dev/plt/plot_mpl_bar.py +29 -0
- scitex/dev/plt/plot_mpl_barh.py +29 -0
- scitex/dev/plt/plot_mpl_boxplot.py +28 -0
- scitex/dev/plt/plot_mpl_contour.py +31 -0
- scitex/dev/plt/plot_mpl_contourf.py +31 -0
- scitex/dev/plt/plot_mpl_errorbar.py +30 -0
- scitex/dev/plt/plot_mpl_eventplot.py +28 -0
- scitex/dev/plt/plot_mpl_fill.py +30 -0
- scitex/dev/plt/plot_mpl_fill_between.py +31 -0
- scitex/dev/plt/plot_mpl_hexbin.py +28 -0
- scitex/dev/plt/plot_mpl_hist.py +28 -0
- scitex/dev/plt/plot_mpl_hist2d.py +28 -0
- scitex/dev/plt/plot_mpl_imshow.py +29 -0
- scitex/dev/plt/plot_mpl_pcolormesh.py +31 -0
- scitex/dev/plt/plot_mpl_pie.py +29 -0
- scitex/dev/plt/plot_mpl_plot.py +29 -0
- scitex/dev/plt/plot_mpl_quiver.py +31 -0
- scitex/dev/plt/plot_mpl_scatter.py +28 -0
- scitex/dev/plt/plot_mpl_stackplot.py +31 -0
- scitex/dev/plt/plot_mpl_stem.py +29 -0
- scitex/dev/plt/plot_mpl_step.py +29 -0
- scitex/dev/plt/plot_mpl_violinplot.py +28 -0
- scitex/dev/plt/plot_sns_barplot.py +29 -0
- scitex/dev/plt/plot_sns_boxplot.py +29 -0
- scitex/dev/plt/plot_sns_heatmap.py +28 -0
- scitex/dev/plt/plot_sns_histplot.py +29 -0
- scitex/dev/plt/plot_sns_kdeplot.py +29 -0
- scitex/dev/plt/plot_sns_lineplot.py +31 -0
- scitex/dev/plt/plot_sns_scatterplot.py +29 -0
- scitex/dev/plt/plot_sns_stripplot.py +29 -0
- scitex/dev/plt/plot_sns_swarmplot.py +29 -0
- scitex/dev/plt/plot_sns_violinplot.py +29 -0
- scitex/dev/plt/plot_stx_bar.py +29 -0
- scitex/dev/plt/plot_stx_barh.py +29 -0
- scitex/dev/plt/plot_stx_box.py +28 -0
- scitex/dev/plt/plot_stx_boxplot.py +28 -0
- scitex/dev/plt/plot_stx_conf_mat.py +28 -0
- scitex/dev/plt/plot_stx_contour.py +31 -0
- scitex/dev/plt/plot_stx_ecdf.py +28 -0
- scitex/dev/plt/plot_stx_errorbar.py +30 -0
- scitex/dev/plt/plot_stx_fill_between.py +31 -0
- scitex/dev/plt/plot_stx_fillv.py +28 -0
- scitex/dev/plt/plot_stx_heatmap.py +28 -0
- scitex/dev/plt/plot_stx_image.py +28 -0
- scitex/dev/plt/plot_stx_imshow.py +28 -0
- scitex/dev/plt/plot_stx_joyplot.py +28 -0
- scitex/dev/plt/plot_stx_kde.py +28 -0
- scitex/dev/plt/plot_stx_line.py +28 -0
- scitex/dev/plt/plot_stx_mean_ci.py +28 -0
- scitex/dev/plt/plot_stx_mean_std.py +28 -0
- scitex/dev/plt/plot_stx_median_iqr.py +28 -0
- scitex/dev/plt/plot_stx_raster.py +28 -0
- scitex/dev/plt/plot_stx_rectangle.py +28 -0
- scitex/dev/plt/plot_stx_scatter.py +29 -0
- scitex/dev/plt/plot_stx_shaded_line.py +29 -0
- scitex/dev/plt/plot_stx_violin.py +28 -0
- scitex/dev/plt/plot_stx_violinplot.py +28 -0
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/fig/__init__.py +352 -0
- scitex/{vis → fig}/backend/__init__.py +3 -3
- scitex/{vis/backend/export.py → fig/backend/_export.py} +1 -1
- scitex/{vis/backend/parser.py → fig/backend/_parser.py} +2 -4
- scitex/{vis/backend/render.py → fig/backend/_render.py} +1 -1
- scitex/{vis → fig}/canvas.py +16 -4
- scitex/{vis → fig}/editor/__init__.py +0 -0
- scitex/{vis → fig}/editor/_dearpygui_editor.py +450 -304
- scitex/fig/editor/_defaults.py +300 -0
- scitex/fig/editor/_edit.py +751 -0
- scitex/{vis → fig}/editor/_flask_editor.py +8 -8
- scitex/{vis → fig}/editor/_mpl_editor.py +63 -48
- scitex/{vis → fig}/editor/_qt_editor.py +391 -160
- scitex/{vis → fig}/editor/_tkinter_editor.py +146 -89
- scitex/fig/editor/flask_editor/__init__.py +21 -0
- scitex/fig/editor/flask_editor/_bbox.py +1276 -0
- scitex/fig/editor/flask_editor/_core.py +624 -0
- scitex/fig/editor/flask_editor/_plotter.py +601 -0
- scitex/fig/editor/flask_editor/_renderer.py +739 -0
- scitex/{vis/editor/flask_editor/utils.py → fig/editor/flask_editor/_utils.py} +13 -14
- scitex/{vis → fig}/editor/flask_editor/templates/__init__.py +6 -6
- scitex/fig/editor/flask_editor/templates/_html.py +834 -0
- scitex/fig/editor/flask_editor/templates/_scripts.py +3136 -0
- scitex/fig/editor/flask_editor/templates/_styles.py +1346 -0
- scitex/{vis → fig}/io/__init__.py +18 -6
- scitex/fig/io/_bundle.py +973 -0
- scitex/{vis/io/canvas.py → fig/io/_canvas.py} +9 -5
- scitex/{vis/io/data.py → fig/io/_data.py} +14 -10
- scitex/{vis/io/directory.py → fig/io/_directory.py} +7 -4
- scitex/{vis/io/export.py → fig/io/_export.py} +16 -13
- scitex/{vis/io/load.py → fig/io/_load.py} +2 -2
- scitex/{vis/io/panel.py → fig/io/_panel.py} +22 -14
- scitex/{vis/io/save.py → fig/io/_save.py} +1 -1
- scitex/{vis → fig}/model/__init__.py +8 -8
- scitex/{vis/model/annotations.py → fig/model/_annotations.py} +3 -5
- scitex/{vis/model/axes.py → fig/model/_axes.py} +2 -2
- scitex/{vis/model/figure.py → fig/model/_figure.py} +1 -1
- scitex/{vis/model/guides.py → fig/model/_guides.py} +2 -2
- scitex/{vis/model/plot.py → fig/model/_plot.py} +3 -5
- scitex/{vis/model/plot_types.py → fig/model/_plot_types.py} +0 -0
- scitex/{vis/model/styles.py → fig/model/_styles.py} +1 -1
- scitex/{vis → fig}/utils/__init__.py +3 -3
- scitex/{vis/utils/defaults.py → fig/utils/_defaults.py} +1 -2
- scitex/{vis/utils/validate.py → fig/utils/_validate.py} +3 -9
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +12 -27
- scitex/io/_bundle.py +434 -0
- scitex/io/_flush.py +5 -2
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +104 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +11 -14
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +6 -11
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +7 -4
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
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- scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
- scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
- scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
- scitex/scholar/url_finder/translators/individual/plos.py +9 -12
- scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
- scitex/scholar/url_finder/translators/individual/primo.py +3 -1
- scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
- scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
- scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
- scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
- scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
- scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
- scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
- scitex/scholar/url_finder/translators/individual/sora.py +3 -1
- scitex/scholar/url_finder/translators/individual/springer.py +15 -11
- scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
- scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
- scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
- scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
- scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
- scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
- scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
- scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
- scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
- scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
- scitex/scholar/utils/text/_TextNormalizer.py +249 -176
- scitex/scholar/utils/validation/DOIValidator.py +31 -28
- scitex/scholar/utils/validation/__init__.py +0 -0
- scitex/scholar/utils/validation/validate_library_dois.py +61 -57
- scitex/scholar/zotero/__init__.py +1 -1
- scitex/security/cli.py +7 -20
- scitex/security/github.py +45 -32
- scitex/session/__init__.py +8 -9
- scitex/session/_decorator.py +49 -42
- scitex/session/_lifecycle.py +39 -39
- scitex/session/_manager.py +24 -20
- scitex/sh/__init__.py +4 -3
- scitex/sh/_execute.py +10 -7
- scitex/sh/_security.py +3 -3
- scitex/sh/_types.py +2 -3
- scitex/stats/__init__.py +174 -6
- scitex/stats/_schema.py +42 -569
- scitex/stats/auto/__init__.py +188 -0
- scitex/stats/auto/_context.py +331 -0
- scitex/stats/auto/_formatting.py +679 -0
- scitex/stats/auto/_rules.py +901 -0
- scitex/stats/auto/_selector.py +554 -0
- scitex/stats/auto/_styles.py +721 -0
- scitex/stats/correct/__init__.py +4 -4
- scitex/stats/correct/_correct_bonferroni.py +43 -34
- scitex/stats/correct/_correct_fdr.py +14 -40
- scitex/stats/correct/_correct_fdr_.py +39 -46
- scitex/stats/correct/_correct_holm.py +14 -32
- scitex/stats/correct/_correct_sidak.py +36 -21
- scitex/stats/descriptive/_circular.py +20 -21
- scitex/stats/descriptive/_describe.py +19 -5
- scitex/stats/descriptive/_nan.py +5 -7
- scitex/stats/descriptive/_real.py +4 -3
- scitex/stats/effect_sizes/__init__.py +10 -11
- scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
- scitex/stats/effect_sizes/_cohens_d.py +30 -31
- scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
- scitex/stats/effect_sizes/_eta_squared.py +23 -27
- scitex/stats/effect_sizes/_prob_superiority.py +18 -21
- scitex/stats/io/__init__.py +29 -0
- scitex/stats/io/_bundle.py +156 -0
- scitex/stats/posthoc/__init__.py +3 -3
- scitex/stats/posthoc/_dunnett.py +75 -55
- scitex/stats/posthoc/_games_howell.py +61 -43
- scitex/stats/posthoc/_tukey_hsd.py +42 -34
- scitex/stats/power/__init__.py +2 -2
- scitex/stats/power/_power.py +56 -56
- scitex/stats/tests/__init__.py +1 -1
- scitex/stats/tests/correlation/__init__.py +1 -1
- scitex/stats/tests/correlation/_test_pearson.py +28 -38
- scitex/stats/utils/__init__.py +14 -17
- scitex/stats/utils/_effect_size.py +85 -78
- scitex/stats/utils/_formatters.py +49 -43
- scitex/stats/utils/_normalizers.py +7 -14
- scitex/stats/utils/_power.py +56 -56
- scitex/str/__init__.py +1 -0
- scitex/str/_clean_path.py +3 -3
- scitex/str/_factor_out_digits.py +86 -58
- scitex/str/_format_plot_text.py +180 -111
- scitex/str/_latex.py +19 -19
- scitex/str/_latex_fallback.py +9 -10
- scitex/str/_parse.py +3 -6
- scitex/str/_print_debug.py +13 -13
- scitex/str/_printc.py +2 -0
- scitex/str/_search.py +3 -3
- scitex/template/.legacy/_clone_project.py +9 -13
- scitex/template/__init__.py +10 -2
- scitex/template/_clone_project.py +7 -2
- scitex/template/_copy.py +1 -0
- scitex/template/_customize.py +3 -6
- scitex/template/_git_strategy.py +2 -3
- scitex/template/_rename.py +1 -0
- scitex/template/clone_pip_project.py +6 -7
- scitex/template/clone_research.py +7 -10
- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/__init__.py +4 -0
- scitex/tex/_export.py +890 -0
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/METADATA +14 -10
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/RECORD +1149 -985
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/io/memo.md +0 -2827
- scitex/plt/_subplots/TODO.md +0 -53
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +0 -537
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +0 -1499
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +0 -431
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/__init__.py +0 -177
- scitex/vis/editor/_defaults.py +0 -244
- scitex/vis/editor/_edit.py +0 -378
- scitex/vis/editor/flask_editor/__init__.py +0 -21
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/core.py +0 -152
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/html.py +0 -295
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- scitex/vis/editor/flask_editor/templates/styles.py +0 -549
- /scitex/{vis → fig}/README.md +0 -0
- /scitex/{vis → fig}/docs/CANVAS_ARCHITECTURE.md +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/licenses/LICENSE +0 -0
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record_index (int): Index of this record in the history (used as fallback
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for trace_id when user doesn't provide an explicit id= kwarg).
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@@ -349,6 +410,16 @@ def format_record(record):
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# stx_ aliases
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return _format_stx_scatter(id, tracked_dict, kwargs)
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elif method == "stx_bar":
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return _format_stx_barh(id, tracked_dict, kwargs)
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# Seaborn functions (sns_ prefix)
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@@ -381,4 +452,5 @@ def format_record(record):
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f"Check the feature-request-export-as-csv-functions.md for implementation status."
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)
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# EOF
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@@ -4,6 +4,7 @@
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# File: /data/gpfs/projects/punim2354/ywatanabe/scitex_repo/src/scitex/plt/_subplots/_export_as_csv_formatters/__init__.py
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# ----------------------------------------
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import os
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# ----------------------------------------
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@@ -40,10 +41,12 @@ from ._format_violinplot import _format_violinplot
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from ._format_plot_imshow import _format_plot_imshow
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from ._format_plot_box import _format_plot_box
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from ._format_stx_conf_mat import _format_plot_conf_mat
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+
from ._format_stx_contour import _format_stx_contour
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from ._format_stx_ecdf import _format_plot_ecdf
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from ._format_stx_fillv import _format_plot_fillv
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from ._format_stx_heatmap import _format_plot_heatmap
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from ._format_stx_image import _format_plot_image
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+
from ._format_stx_imshow import _format_stx_imshow
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from ._format_stx_joyplot import _format_plot_joyplot
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from ._format_plot_kde import _format_plot_kde
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from ._format_stx_line import _format_plot_line
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@@ -57,6 +60,12 @@ from ._format_stx_scatter_hist import _format_plot_scatter_hist
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from ._format_stx_shaded_line import _format_plot_shaded_line
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from ._format_stx_violin import _format_plot_violin
|
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|
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63
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+
# stx_ aliases formatters
|
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+
from ._format_stx_scatter import _format_stx_scatter
|
|
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|
+
from ._format_stx_bar import _format_stx_bar
|
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+
from ._format_stx_barh import _format_stx_barh
|
|
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+
from ._format_stx_errorbar import _format_stx_errorbar
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+
|
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# Seaborn formatters (sns_ prefix)
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from ._format_sns_barplot import _format_sns_barplot
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from ._format_sns_boxplot import _format_sns_boxplot
|
|
@@ -5,28 +5,15 @@
|
|
|
5
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|
# ----------------------------------------
|
|
6
6
|
from __future__ import annotations
|
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7
7
|
import os
|
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8
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+
|
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8
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|
__FILE__ = __file__
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__DIR__ = os.path.dirname(__FILE__)
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|
# ----------------------------------------
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import pandas as pd
|
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"""Create column name with method descriptor, avoiding duplication.
|
|
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|
-
|
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For example:
|
|
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|
-
- id="annotate_0", suffix="x" -> "annotate_0_x"
|
|
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|
-
- id="plot_5", suffix="x" -> "plot_5_annotate_x"
|
|
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|
-
"""
|
|
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|
-
# Check if method name is already in the ID
|
|
23
|
-
id_parts = id.rsplit('_', 1)
|
|
24
|
-
if len(id_parts) == 2 and id_parts[0].endswith(method):
|
|
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|
-
# Method already in ID, don't duplicate
|
|
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|
-
return f"{id}_{suffix}"
|
|
27
|
-
else:
|
|
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|
-
# Method not in ID, add it for clarity
|
|
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|
-
return f"{id}_{method}_{suffix}"
|
|
15
|
+
from scitex.plt.utils._csv_column_naming import get_csv_column_name
|
|
16
|
+
from ._format_plot import _parse_tracking_id
|
|
30
17
|
|
|
31
18
|
|
|
32
19
|
def _format_annotate(id, tracked_dict, kwargs):
|
|
@@ -41,6 +28,9 @@ def _format_annotate(id, tracked_dict, kwargs):
|
|
|
41
28
|
if not tracked_dict or not isinstance(tracked_dict, dict):
|
|
42
29
|
return pd.DataFrame()
|
|
43
30
|
|
|
31
|
+
# Parse the tracking ID to get axes position and trace ID
|
|
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|
+
ax_row, ax_col, trace_id = _parse_tracking_id(id)
|
|
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|
+
|
|
44
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|
# Get the args from tracked_dict
|
|
45
35
|
args = tracked_dict.get("args", [])
|
|
46
36
|
|
|
@@ -50,15 +40,15 @@ def _format_annotate(id, tracked_dict, kwargs):
|
|
|
50
40
|
xy = args[1]
|
|
51
41
|
|
|
52
42
|
# xy should be a tuple (x, y)
|
|
53
|
-
if hasattr(xy,
|
|
43
|
+
if hasattr(xy, "__len__") and len(xy) >= 2:
|
|
54
44
|
x, y = xy[0], xy[1]
|
|
55
45
|
else:
|
|
56
46
|
return pd.DataFrame()
|
|
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|
|
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58
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|
data = {
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
49
|
+
get_csv_column_name("x", ax_row, ax_col, trace_id=trace_id): [x],
|
|
50
|
+
get_csv_column_name("y", ax_row, ax_col, trace_id=trace_id): [y],
|
|
51
|
+
get_csv_column_name("content", ax_row, ax_col, trace_id=trace_id): [text_content],
|
|
62
52
|
}
|
|
63
53
|
|
|
64
54
|
# Check if xytext was provided (either as third arg or in kwargs)
|
|
@@ -68,9 +58,9 @@ def _format_annotate(id, tracked_dict, kwargs):
|
|
|
68
58
|
elif "xytext" in kwargs:
|
|
69
59
|
xytext = kwargs["xytext"]
|
|
70
60
|
|
|
71
|
-
if xytext is not None and hasattr(xytext,
|
|
72
|
-
data[
|
|
73
|
-
data[
|
|
61
|
+
if xytext is not None and hasattr(xytext, "__len__") and len(xytext) >= 2:
|
|
62
|
+
data[get_csv_column_name("text_x", ax_row, ax_col, trace_id=trace_id)] = [xytext[0]]
|
|
63
|
+
data[get_csv_column_name("text_y", ax_row, ax_col, trace_id=trace_id)] = [xytext[1]]
|
|
74
64
|
|
|
75
65
|
# Create DataFrame with proper column names (use dict with list values)
|
|
76
66
|
df = pd.DataFrame(data)
|
|
@@ -78,4 +68,5 @@ def _format_annotate(id, tracked_dict, kwargs):
|
|
|
78
68
|
|
|
79
69
|
return pd.DataFrame()
|
|
80
70
|
|
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+
|
|
81
72
|
# EOF
|
|
@@ -4,6 +4,7 @@
|
|
|
4
4
|
# File: /data/gpfs/projects/punim2354/ywatanabe/scitex_repo/src/scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py
|
|
5
5
|
# ----------------------------------------
|
|
6
6
|
import os
|
|
7
|
+
|
|
7
8
|
__FILE__ = __file__
|
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8
9
|
__DIR__ = os.path.dirname(__FILE__)
|
|
9
10
|
# ----------------------------------------
|
|
@@ -11,78 +12,127 @@ __DIR__ = os.path.dirname(__FILE__)
|
|
|
11
12
|
import pandas as pd
|
|
12
13
|
import numpy as np
|
|
13
14
|
|
|
15
|
+
from scitex.plt.utils._csv_column_naming import get_csv_column_name
|
|
16
|
+
from ._format_plot import _parse_tracking_id
|
|
17
|
+
|
|
18
|
+
|
|
14
19
|
def _format_bar(id, tracked_dict, kwargs):
|
|
15
20
|
"""Format data from a bar call for CSV export.
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
21
|
+
|
|
22
|
+
Includes x, y values and optional yerr for error bars.
|
|
23
|
+
|
|
19
24
|
Args:
|
|
20
25
|
id: The identifier for the plot
|
|
21
26
|
tracked_dict: Dictionary of tracked data
|
|
22
|
-
kwargs: Original keyword arguments
|
|
23
|
-
|
|
27
|
+
kwargs: Original keyword arguments (may contain yerr)
|
|
28
|
+
|
|
24
29
|
Returns:
|
|
25
|
-
pd.DataFrame: Formatted data ready for CSV export with
|
|
30
|
+
pd.DataFrame: Formatted data ready for CSV export with x, y, and optional yerr
|
|
26
31
|
"""
|
|
27
32
|
# Check if tracked_dict is empty or not a dictionary
|
|
28
33
|
if not tracked_dict or not isinstance(tracked_dict, dict):
|
|
29
34
|
return pd.DataFrame()
|
|
30
|
-
|
|
35
|
+
|
|
36
|
+
# Parse tracking ID to get axes position and trace ID
|
|
37
|
+
ax_row, ax_col, trace_id = _parse_tracking_id(id)
|
|
38
|
+
|
|
39
|
+
# Get structured column names
|
|
40
|
+
col_x = get_csv_column_name("x", ax_row, ax_col, trace_id=trace_id)
|
|
41
|
+
col_y = get_csv_column_name("y", ax_row, ax_col, trace_id=trace_id)
|
|
42
|
+
col_yerr = get_csv_column_name("yerr", ax_row, ax_col, trace_id=trace_id)
|
|
43
|
+
|
|
44
|
+
# Extract yerr from kwargs if present
|
|
45
|
+
yerr = kwargs.get("yerr") if kwargs else None
|
|
46
|
+
|
|
31
47
|
# Check if we have the newer format with bar_data
|
|
32
|
-
if
|
|
48
|
+
if "bar_data" in tracked_dict and isinstance(
|
|
49
|
+
tracked_dict["bar_data"], pd.DataFrame
|
|
50
|
+
):
|
|
33
51
|
# Use the pre-formatted DataFrame but keep only x and height (y)
|
|
34
|
-
df = tracked_dict[
|
|
35
|
-
|
|
52
|
+
df = tracked_dict["bar_data"].copy()
|
|
53
|
+
|
|
36
54
|
# Keep only essential columns
|
|
37
|
-
essential_cols = [col for col in df.columns if col in [
|
|
55
|
+
essential_cols = [col for col in df.columns if col in ["x", "height"]]
|
|
38
56
|
if essential_cols:
|
|
39
57
|
df = df[essential_cols]
|
|
40
|
-
|
|
41
|
-
# Rename
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
58
|
+
|
|
59
|
+
# Rename using structured naming
|
|
60
|
+
rename_map = {}
|
|
61
|
+
if "x" in df.columns:
|
|
62
|
+
rename_map["x"] = col_x
|
|
63
|
+
if "height" in df.columns:
|
|
64
|
+
rename_map["height"] = col_y
|
|
65
|
+
|
|
66
|
+
df = df.rename(columns=rename_map)
|
|
67
|
+
|
|
68
|
+
# Add yerr if present
|
|
69
|
+
if yerr is not None:
|
|
70
|
+
try:
|
|
71
|
+
yerr_array = np.asarray(yerr)
|
|
72
|
+
if len(yerr_array) == len(df):
|
|
73
|
+
df[col_yerr] = yerr_array
|
|
74
|
+
except (TypeError, ValueError):
|
|
75
|
+
pass
|
|
76
|
+
|
|
47
77
|
return df
|
|
48
|
-
|
|
78
|
+
|
|
49
79
|
# Legacy format - get the args from tracked_dict
|
|
50
|
-
args = tracked_dict.get(
|
|
51
|
-
|
|
80
|
+
args = tracked_dict.get("args", [])
|
|
81
|
+
|
|
52
82
|
# Extract x and y data if available
|
|
53
83
|
if len(args) >= 2:
|
|
54
84
|
x, y = args[0], args[1]
|
|
55
|
-
|
|
85
|
+
|
|
56
86
|
# Convert to arrays if possible for consistent handling
|
|
57
87
|
try:
|
|
58
88
|
x_array = np.asarray(x)
|
|
59
89
|
y_array = np.asarray(y)
|
|
60
|
-
|
|
61
|
-
# Create DataFrame with
|
|
90
|
+
|
|
91
|
+
# Create DataFrame with structured column names
|
|
62
92
|
data = {
|
|
63
|
-
|
|
64
|
-
|
|
93
|
+
col_x: x_array,
|
|
94
|
+
col_y: y_array,
|
|
65
95
|
}
|
|
66
|
-
|
|
96
|
+
|
|
97
|
+
# Add yerr if present
|
|
98
|
+
if yerr is not None:
|
|
99
|
+
try:
|
|
100
|
+
yerr_array = np.asarray(yerr)
|
|
101
|
+
if len(yerr_array) == len(x_array):
|
|
102
|
+
data[col_yerr] = yerr_array
|
|
103
|
+
except (TypeError, ValueError):
|
|
104
|
+
pass
|
|
105
|
+
|
|
67
106
|
return pd.DataFrame(data)
|
|
68
|
-
|
|
107
|
+
|
|
69
108
|
except (TypeError, ValueError):
|
|
70
109
|
# Fall back to direct values if conversion fails
|
|
71
|
-
|
|
72
|
-
|
|
110
|
+
result = {col_x: x, col_y: y}
|
|
111
|
+
if yerr is not None:
|
|
112
|
+
result[col_yerr] = yerr
|
|
113
|
+
return pd.DataFrame(result)
|
|
114
|
+
|
|
73
115
|
# If we have tracked data in another format (like our MatplotlibPlotMixin bar method)
|
|
74
116
|
result = {}
|
|
75
|
-
|
|
117
|
+
|
|
76
118
|
# Check for x position (might be in different keys)
|
|
77
|
-
for x_key in [
|
|
119
|
+
for x_key in ["x", "xs", "positions"]:
|
|
78
120
|
if x_key in tracked_dict:
|
|
79
|
-
result[
|
|
121
|
+
result[col_x] = tracked_dict[x_key]
|
|
80
122
|
break
|
|
81
|
-
|
|
123
|
+
|
|
82
124
|
# Check for y values (might be in different keys)
|
|
83
|
-
for y_key in [
|
|
125
|
+
for y_key in ["y", "ys", "height", "heights", "values"]:
|
|
84
126
|
if y_key in tracked_dict:
|
|
85
|
-
result[
|
|
127
|
+
result[col_y] = tracked_dict[y_key]
|
|
86
128
|
break
|
|
87
|
-
|
|
88
|
-
|
|
129
|
+
|
|
130
|
+
# Add yerr if present in kwargs
|
|
131
|
+
if yerr is not None and result:
|
|
132
|
+
try:
|
|
133
|
+
yerr_array = np.asarray(yerr)
|
|
134
|
+
result[col_yerr] = yerr_array
|
|
135
|
+
except (TypeError, ValueError):
|
|
136
|
+
pass
|
|
137
|
+
|
|
138
|
+
return pd.DataFrame(result) if result else pd.DataFrame()
|
|
@@ -4,61 +4,55 @@
|
|
|
4
4
|
# File: /data/gpfs/projects/punim2354/ywatanabe/scitex_repo/src/scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py
|
|
5
5
|
# ----------------------------------------
|
|
6
6
|
import os
|
|
7
|
+
|
|
7
8
|
__FILE__ = __file__
|
|
8
9
|
__DIR__ = os.path.dirname(__FILE__)
|
|
9
10
|
# ----------------------------------------
|
|
10
11
|
|
|
11
12
|
import pandas as pd
|
|
12
13
|
|
|
13
|
-
|
|
14
|
-
|
|
14
|
+
from scitex.plt.utils._csv_column_naming import get_csv_column_name
|
|
15
|
+
from ._format_plot import _parse_tracking_id
|
|
15
16
|
|
|
16
|
-
For example:
|
|
17
|
-
- id="barh_0", suffix="x" -> "barh_0_barh_x"
|
|
18
|
-
- id="plot_5", suffix="x" -> "plot_5_barh_x"
|
|
19
|
-
"""
|
|
20
|
-
# Check if method name is already in the ID
|
|
21
|
-
id_parts = id.rsplit('_', 1)
|
|
22
|
-
if len(id_parts) == 2 and id_parts[0].endswith(method):
|
|
23
|
-
# Method already in ID, don't duplicate
|
|
24
|
-
return f"{id}_{suffix}"
|
|
25
|
-
else:
|
|
26
|
-
# Method not in ID, add it for clarity
|
|
27
|
-
return f"{id}_{method}_{suffix}"
|
|
28
17
|
|
|
29
18
|
def _format_barh(id, tracked_dict, kwargs):
|
|
30
19
|
"""Format data from a barh call."""
|
|
31
20
|
# Check if tracked_dict is empty or not a dictionary
|
|
32
21
|
if not tracked_dict or not isinstance(tracked_dict, dict):
|
|
33
22
|
return pd.DataFrame()
|
|
34
|
-
|
|
23
|
+
|
|
24
|
+
# Parse tracking ID to get axes position and trace ID
|
|
25
|
+
ax_row, ax_col, trace_id = _parse_tracking_id(id)
|
|
26
|
+
|
|
35
27
|
# Get the args from tracked_dict
|
|
36
|
-
args = tracked_dict.get(
|
|
37
|
-
|
|
28
|
+
args = tracked_dict.get("args", [])
|
|
29
|
+
|
|
38
30
|
# Extract x and y data if available
|
|
39
31
|
if len(args) >= 2:
|
|
40
|
-
# Note: in barh,
|
|
41
|
-
|
|
42
|
-
|
|
32
|
+
# Note: in barh, first arg is y positions, second is widths (x values)
|
|
33
|
+
y_pos, x_width = args[0], args[1]
|
|
34
|
+
|
|
43
35
|
# Get xerr from kwargs
|
|
44
36
|
xerr = kwargs.get("xerr")
|
|
45
|
-
|
|
37
|
+
|
|
46
38
|
# Convert single values to Series
|
|
47
|
-
if isinstance(
|
|
48
|
-
|
|
49
|
-
if isinstance(
|
|
50
|
-
|
|
39
|
+
if isinstance(y_pos, (int, float)):
|
|
40
|
+
y_pos = pd.Series(y_pos, name="y")
|
|
41
|
+
if isinstance(x_width, (int, float)):
|
|
42
|
+
x_width = pd.Series(x_width, name="x")
|
|
51
43
|
else:
|
|
52
44
|
# Not enough arguments
|
|
53
45
|
return pd.DataFrame()
|
|
54
46
|
|
|
55
|
-
# Use
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
47
|
+
# Use structured column naming: ax-row-{row}-col-{col}_trace-id-{id}_variable-{var}
|
|
48
|
+
col_x = get_csv_column_name("x", ax_row, ax_col, trace_id=trace_id)
|
|
49
|
+
col_y = get_csv_column_name("y", ax_row, ax_col, trace_id=trace_id)
|
|
50
|
+
|
|
51
|
+
df = pd.DataFrame({col_y: y_pos, col_x: x_width})
|
|
59
52
|
|
|
60
53
|
if xerr is not None:
|
|
61
54
|
if isinstance(xerr, (int, float)):
|
|
62
55
|
xerr = pd.Series(xerr, name="xerr")
|
|
63
|
-
|
|
64
|
-
|
|
56
|
+
col_xerr = get_csv_column_name("xerr", ax_row, ax_col, trace_id=trace_id)
|
|
57
|
+
df[col_xerr] = xerr
|
|
58
|
+
return df
|