scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1179) hide show
  1. scitex/__init__.py +25 -10
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/audio/README.md +52 -0
  66. scitex/audio/__init__.py +384 -0
  67. scitex/audio/__main__.py +129 -0
  68. scitex/audio/_tts.py +334 -0
  69. scitex/audio/engines/__init__.py +44 -0
  70. scitex/audio/engines/base.py +275 -0
  71. scitex/audio/engines/elevenlabs_engine.py +143 -0
  72. scitex/audio/engines/gtts_engine.py +162 -0
  73. scitex/audio/engines/pyttsx3_engine.py +131 -0
  74. scitex/audio/mcp_server.py +757 -0
  75. scitex/benchmark/__init__.py +15 -25
  76. scitex/benchmark/benchmark.py +124 -117
  77. scitex/benchmark/monitor.py +117 -107
  78. scitex/benchmark/profiler.py +61 -58
  79. scitex/bridge/__init__.py +110 -0
  80. scitex/bridge/_helpers.py +149 -0
  81. scitex/bridge/_plt_vis.py +529 -0
  82. scitex/bridge/_protocol.py +283 -0
  83. scitex/bridge/_stats_plt.py +261 -0
  84. scitex/bridge/_stats_vis.py +265 -0
  85. scitex/browser/__init__.py +0 -2
  86. scitex/browser/auth/__init__.py +0 -0
  87. scitex/browser/auth/google.py +16 -11
  88. scitex/browser/automation/CookieHandler.py +2 -3
  89. scitex/browser/collaboration/__init__.py +3 -0
  90. scitex/browser/collaboration/auth_helpers.py +3 -1
  91. scitex/browser/collaboration/collaborative_agent.py +2 -0
  92. scitex/browser/collaboration/interactive_panel.py +2 -2
  93. scitex/browser/collaboration/shared_session.py +20 -11
  94. scitex/browser/collaboration/standard_interactions.py +1 -0
  95. scitex/browser/core/BrowserMixin.py +12 -30
  96. scitex/browser/core/ChromeProfileManager.py +9 -24
  97. scitex/browser/debugging/_browser_logger.py +15 -25
  98. scitex/browser/debugging/_failure_capture.py +9 -2
  99. scitex/browser/debugging/_highlight_element.py +15 -6
  100. scitex/browser/debugging/_show_grid.py +5 -6
  101. scitex/browser/debugging/_sync_session.py +4 -3
  102. scitex/browser/debugging/_test_monitor.py +14 -5
  103. scitex/browser/debugging/_visual_cursor.py +46 -35
  104. scitex/browser/interaction/click_center.py +4 -3
  105. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  106. scitex/browser/interaction/close_popups.py +79 -66
  107. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  108. scitex/browser/pdf/__init__.py +3 -1
  109. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  110. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  111. scitex/browser/remote/CaptchaHandler.py +109 -96
  112. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  113. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  114. scitex/browser/stealth/HumanBehavior.py +4 -9
  115. scitex/browser/stealth/StealthManager.py +11 -26
  116. scitex/capture/__init__.py +17 -17
  117. scitex/capture/__main__.py +2 -3
  118. scitex/capture/capture.py +23 -51
  119. scitex/capture/cli.py +14 -39
  120. scitex/capture/gif.py +5 -9
  121. scitex/capture/mcp_server.py +7 -20
  122. scitex/capture/session.py +4 -3
  123. scitex/capture/utils.py +18 -53
  124. scitex/cli/__init__.py +1 -1
  125. scitex/cli/cloud.py +158 -116
  126. scitex/cli/config.py +224 -0
  127. scitex/cli/main.py +41 -40
  128. scitex/cli/scholar.py +60 -27
  129. scitex/cli/security.py +14 -20
  130. scitex/cli/web.py +87 -90
  131. scitex/cli/writer.py +51 -45
  132. scitex/cloud/__init__.py +14 -11
  133. scitex/cloud/_matplotlib_hook.py +6 -6
  134. scitex/config/README.md +313 -0
  135. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  136. scitex/config/_ScitexConfig.py +319 -0
  137. scitex/config/__init__.py +41 -9
  138. scitex/config/_paths.py +325 -0
  139. scitex/config/default.yaml +81 -0
  140. scitex/context/_suppress_output.py +2 -3
  141. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  142. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  143. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  144. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  145. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  146. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  147. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  148. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  149. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  150. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  151. scitex/db/_BaseMixins/__init__.py +1 -1
  152. scitex/db/__init__.py +9 -1
  153. scitex/db/__main__.py +8 -21
  154. scitex/db/_check_health.py +15 -31
  155. scitex/db/_delete_duplicates.py +7 -4
  156. scitex/db/_inspect.py +22 -38
  157. scitex/db/_inspect_optimized.py +89 -85
  158. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  159. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  160. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  161. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  162. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  163. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  164. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  165. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  166. scitex/db/_postgresql/__init__.py +1 -1
  167. scitex/db/_sqlite3/_SQLite3.py +2 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  169. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  170. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  171. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  172. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  173. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  174. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  175. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  176. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  177. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  178. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  179. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  180. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  181. scitex/db/_sqlite3/__init__.py +1 -1
  182. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  183. scitex/decorators/__init__.py +29 -4
  184. scitex/decorators/_auto_order.py +43 -43
  185. scitex/decorators/_batch_fn.py +12 -6
  186. scitex/decorators/_cache_disk.py +8 -9
  187. scitex/decorators/_cache_disk_async.py +8 -7
  188. scitex/decorators/_combined.py +19 -13
  189. scitex/decorators/_converters.py +16 -3
  190. scitex/decorators/_deprecated.py +32 -22
  191. scitex/decorators/_numpy_fn.py +18 -4
  192. scitex/decorators/_pandas_fn.py +17 -5
  193. scitex/decorators/_signal_fn.py +17 -3
  194. scitex/decorators/_torch_fn.py +32 -15
  195. scitex/decorators/_xarray_fn.py +23 -9
  196. scitex/dev/_analyze_code_flow.py +0 -2
  197. scitex/dev/plt/__init__.py +272 -0
  198. scitex/dev/plt/plot_mpl_axhline.py +28 -0
  199. scitex/dev/plt/plot_mpl_axhspan.py +28 -0
  200. scitex/dev/plt/plot_mpl_axvline.py +28 -0
  201. scitex/dev/plt/plot_mpl_axvspan.py +28 -0
  202. scitex/dev/plt/plot_mpl_bar.py +29 -0
  203. scitex/dev/plt/plot_mpl_barh.py +29 -0
  204. scitex/dev/plt/plot_mpl_boxplot.py +28 -0
  205. scitex/dev/plt/plot_mpl_contour.py +31 -0
  206. scitex/dev/plt/plot_mpl_contourf.py +31 -0
  207. scitex/dev/plt/plot_mpl_errorbar.py +30 -0
  208. scitex/dev/plt/plot_mpl_eventplot.py +28 -0
  209. scitex/dev/plt/plot_mpl_fill.py +30 -0
  210. scitex/dev/plt/plot_mpl_fill_between.py +31 -0
  211. scitex/dev/plt/plot_mpl_hexbin.py +28 -0
  212. scitex/dev/plt/plot_mpl_hist.py +28 -0
  213. scitex/dev/plt/plot_mpl_hist2d.py +28 -0
  214. scitex/dev/plt/plot_mpl_imshow.py +29 -0
  215. scitex/dev/plt/plot_mpl_pcolormesh.py +31 -0
  216. scitex/dev/plt/plot_mpl_pie.py +29 -0
  217. scitex/dev/plt/plot_mpl_plot.py +29 -0
  218. scitex/dev/plt/plot_mpl_quiver.py +31 -0
  219. scitex/dev/plt/plot_mpl_scatter.py +28 -0
  220. scitex/dev/plt/plot_mpl_stackplot.py +31 -0
  221. scitex/dev/plt/plot_mpl_stem.py +29 -0
  222. scitex/dev/plt/plot_mpl_step.py +29 -0
  223. scitex/dev/plt/plot_mpl_violinplot.py +28 -0
  224. scitex/dev/plt/plot_sns_barplot.py +29 -0
  225. scitex/dev/plt/plot_sns_boxplot.py +29 -0
  226. scitex/dev/plt/plot_sns_heatmap.py +28 -0
  227. scitex/dev/plt/plot_sns_histplot.py +29 -0
  228. scitex/dev/plt/plot_sns_kdeplot.py +29 -0
  229. scitex/dev/plt/plot_sns_lineplot.py +31 -0
  230. scitex/dev/plt/plot_sns_scatterplot.py +29 -0
  231. scitex/dev/plt/plot_sns_stripplot.py +29 -0
  232. scitex/dev/plt/plot_sns_swarmplot.py +29 -0
  233. scitex/dev/plt/plot_sns_violinplot.py +29 -0
  234. scitex/dev/plt/plot_stx_bar.py +29 -0
  235. scitex/dev/plt/plot_stx_barh.py +29 -0
  236. scitex/dev/plt/plot_stx_box.py +28 -0
  237. scitex/dev/plt/plot_stx_boxplot.py +28 -0
  238. scitex/dev/plt/plot_stx_conf_mat.py +28 -0
  239. scitex/dev/plt/plot_stx_contour.py +31 -0
  240. scitex/dev/plt/plot_stx_ecdf.py +28 -0
  241. scitex/dev/plt/plot_stx_errorbar.py +30 -0
  242. scitex/dev/plt/plot_stx_fill_between.py +31 -0
  243. scitex/dev/plt/plot_stx_fillv.py +28 -0
  244. scitex/dev/plt/plot_stx_heatmap.py +28 -0
  245. scitex/dev/plt/plot_stx_image.py +28 -0
  246. scitex/dev/plt/plot_stx_imshow.py +28 -0
  247. scitex/dev/plt/plot_stx_joyplot.py +28 -0
  248. scitex/dev/plt/plot_stx_kde.py +28 -0
  249. scitex/dev/plt/plot_stx_line.py +28 -0
  250. scitex/dev/plt/plot_stx_mean_ci.py +28 -0
  251. scitex/dev/plt/plot_stx_mean_std.py +28 -0
  252. scitex/dev/plt/plot_stx_median_iqr.py +28 -0
  253. scitex/dev/plt/plot_stx_raster.py +28 -0
  254. scitex/dev/plt/plot_stx_rectangle.py +28 -0
  255. scitex/dev/plt/plot_stx_scatter.py +29 -0
  256. scitex/dev/plt/plot_stx_shaded_line.py +29 -0
  257. scitex/dev/plt/plot_stx_violin.py +28 -0
  258. scitex/dev/plt/plot_stx_violinplot.py +28 -0
  259. scitex/dict/_DotDict.py +15 -19
  260. scitex/dict/_flatten.py +1 -0
  261. scitex/dict/_listed_dict.py +1 -0
  262. scitex/dict/_pop_keys.py +1 -0
  263. scitex/dict/_replace.py +1 -0
  264. scitex/dict/_safe_merge.py +1 -0
  265. scitex/dict/_to_str.py +2 -3
  266. scitex/dsp/__init__.py +13 -4
  267. scitex/dsp/_crop.py +3 -1
  268. scitex/dsp/_detect_ripples.py +3 -1
  269. scitex/dsp/_modulation_index.py +3 -1
  270. scitex/dsp/_time.py +3 -1
  271. scitex/dsp/_wavelet.py +0 -1
  272. scitex/dsp/example.py +0 -5
  273. scitex/dsp/filt.py +4 -0
  274. scitex/dsp/utils/__init__.py +4 -1
  275. scitex/dsp/utils/pac.py +3 -3
  276. scitex/dt/_normalize_timestamp.py +4 -1
  277. scitex/errors.py +3 -6
  278. scitex/etc/__init__.py +1 -1
  279. scitex/fig/__init__.py +352 -0
  280. scitex/{vis → fig}/backend/__init__.py +3 -3
  281. scitex/{vis/backend/export.py → fig/backend/_export.py} +1 -1
  282. scitex/{vis/backend/parser.py → fig/backend/_parser.py} +2 -4
  283. scitex/{vis/backend/render.py → fig/backend/_render.py} +1 -1
  284. scitex/{vis → fig}/canvas.py +16 -4
  285. scitex/{vis → fig}/editor/__init__.py +0 -0
  286. scitex/{vis → fig}/editor/_dearpygui_editor.py +450 -304
  287. scitex/fig/editor/_defaults.py +300 -0
  288. scitex/fig/editor/_edit.py +751 -0
  289. scitex/{vis → fig}/editor/_flask_editor.py +8 -8
  290. scitex/{vis → fig}/editor/_mpl_editor.py +63 -48
  291. scitex/{vis → fig}/editor/_qt_editor.py +391 -160
  292. scitex/{vis → fig}/editor/_tkinter_editor.py +146 -89
  293. scitex/fig/editor/flask_editor/__init__.py +21 -0
  294. scitex/fig/editor/flask_editor/_bbox.py +1276 -0
  295. scitex/fig/editor/flask_editor/_core.py +624 -0
  296. scitex/fig/editor/flask_editor/_plotter.py +601 -0
  297. scitex/fig/editor/flask_editor/_renderer.py +739 -0
  298. scitex/{vis/editor/flask_editor/utils.py → fig/editor/flask_editor/_utils.py} +13 -14
  299. scitex/{vis → fig}/editor/flask_editor/templates/__init__.py +6 -6
  300. scitex/fig/editor/flask_editor/templates/_html.py +834 -0
  301. scitex/fig/editor/flask_editor/templates/_scripts.py +3136 -0
  302. scitex/fig/editor/flask_editor/templates/_styles.py +1346 -0
  303. scitex/{vis → fig}/io/__init__.py +18 -6
  304. scitex/fig/io/_bundle.py +973 -0
  305. scitex/{vis/io/canvas.py → fig/io/_canvas.py} +9 -5
  306. scitex/{vis/io/data.py → fig/io/_data.py} +14 -10
  307. scitex/{vis/io/directory.py → fig/io/_directory.py} +7 -4
  308. scitex/{vis/io/export.py → fig/io/_export.py} +16 -13
  309. scitex/{vis/io/load.py → fig/io/_load.py} +2 -2
  310. scitex/{vis/io/panel.py → fig/io/_panel.py} +22 -14
  311. scitex/{vis/io/save.py → fig/io/_save.py} +1 -1
  312. scitex/{vis → fig}/model/__init__.py +8 -8
  313. scitex/{vis/model/annotations.py → fig/model/_annotations.py} +3 -5
  314. scitex/{vis/model/axes.py → fig/model/_axes.py} +2 -2
  315. scitex/{vis/model/figure.py → fig/model/_figure.py} +1 -1
  316. scitex/{vis/model/guides.py → fig/model/_guides.py} +2 -2
  317. scitex/{vis/model/plot.py → fig/model/_plot.py} +3 -5
  318. scitex/{vis/model/plot_types.py → fig/model/_plot_types.py} +0 -0
  319. scitex/{vis/model/styles.py → fig/model/_styles.py} +1 -1
  320. scitex/{vis → fig}/utils/__init__.py +3 -3
  321. scitex/{vis/utils/defaults.py → fig/utils/_defaults.py} +1 -2
  322. scitex/{vis/utils/validate.py → fig/utils/_validate.py} +3 -9
  323. scitex/gen/_DimHandler.py +6 -6
  324. scitex/gen/__init__.py +5 -1
  325. scitex/gen/_deprecated_close.py +1 -0
  326. scitex/gen/_deprecated_start.py +5 -3
  327. scitex/gen/_detect_environment.py +44 -41
  328. scitex/gen/_detect_notebook_path.py +51 -47
  329. scitex/gen/_embed.py +1 -1
  330. scitex/gen/_get_notebook_path.py +81 -62
  331. scitex/gen/_inspect_module.py +0 -1
  332. scitex/gen/_norm.py +16 -7
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  334. scitex/gen/_print_config.py +0 -3
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  928. scitex/scholar/url_finder/translators/individual/caod.py +50 -46
  929. scitex/scholar/url_finder/translators/individual/cbc.py +91 -67
  930. scitex/scholar/url_finder/translators/individual/ccfr_bnf.py +49 -53
  931. scitex/scholar/url_finder/translators/individual/cia_world_factbook.py +43 -33
  932. scitex/scholar/url_finder/translators/individual/crossref_rest.py +208 -174
  933. scitex/scholar/url_finder/translators/individual/current_affairs.py +29 -35
  934. scitex/scholar/url_finder/translators/individual/dabi.py +70 -66
  935. scitex/scholar/url_finder/translators/individual/dagens_nyheter.py +3 -1
  936. scitex/scholar/url_finder/translators/individual/dagstuhl.py +10 -15
  937. scitex/scholar/url_finder/translators/individual/dar_almandumah.py +13 -9
  938. scitex/scholar/url_finder/translators/individual/dart_europe.py +19 -22
  939. scitex/scholar/url_finder/translators/individual/data_gov.py +2 -2
  940. scitex/scholar/url_finder/translators/individual/databrary.py +27 -28
  941. scitex/scholar/url_finder/translators/individual/datacite_json.py +152 -137
  942. scitex/scholar/url_finder/translators/individual/dataverse.py +68 -64
  943. scitex/scholar/url_finder/translators/individual/daum_news.py +38 -38
  944. scitex/scholar/url_finder/translators/individual/dblp.py +4 -8
  945. scitex/scholar/url_finder/translators/individual/dblp_computer_science_bibliography.py +8 -3
  946. scitex/scholar/url_finder/translators/individual/dbpia.py +5 -3
  947. scitex/scholar/url_finder/translators/individual/defense_technical_information_center.py +30 -28
  948. scitex/scholar/url_finder/translators/individual/delpher.py +102 -79
  949. scitex/scholar/url_finder/translators/individual/demographic_research.py +35 -31
  950. scitex/scholar/url_finder/translators/individual/denik_cz.py +58 -54
  951. scitex/scholar/url_finder/translators/individual/depatisnet.py +7 -10
  952. scitex/scholar/url_finder/translators/individual/der_freitag.py +81 -66
  953. scitex/scholar/url_finder/translators/individual/der_spiegel.py +56 -54
  954. scitex/scholar/url_finder/translators/individual/digibib_net.py +3 -1
  955. scitex/scholar/url_finder/translators/individual/digizeitschriften.py +3 -1
  956. scitex/scholar/url_finder/translators/individual/dpla.py +13 -14
  957. scitex/scholar/url_finder/translators/individual/dspace.py +2 -2
  958. scitex/scholar/url_finder/translators/individual/ebrary.py +3 -1
  959. scitex/scholar/url_finder/translators/individual/ebscohost.py +3 -1
  960. scitex/scholar/url_finder/translators/individual/electronic_colloquium_on_computational_complexity.py +3 -1
  961. scitex/scholar/url_finder/translators/individual/elife.py +3 -1
  962. scitex/scholar/url_finder/translators/individual/elsevier_health_journals.py +3 -1
  963. scitex/scholar/url_finder/translators/individual/emerald.py +3 -1
  964. scitex/scholar/url_finder/translators/individual/emerald_insight.py +3 -1
  965. scitex/scholar/url_finder/translators/individual/epicurious.py +3 -1
  966. scitex/scholar/url_finder/translators/individual/eurogamerusgamer.py +3 -1
  967. scitex/scholar/url_finder/translators/individual/fachportal_padagogik.py +3 -1
  968. scitex/scholar/url_finder/translators/individual/frontiers.py +1 -1
  969. scitex/scholar/url_finder/translators/individual/gale_databases.py +3 -1
  970. scitex/scholar/url_finder/translators/individual/gms_german_medical_science.py +6 -2
  971. scitex/scholar/url_finder/translators/individual/ieee_computer_society.py +6 -2
  972. scitex/scholar/url_finder/translators/individual/ieee_xplore.py +41 -35
  973. scitex/scholar/url_finder/translators/individual/inter_research_science_center.py +6 -2
  974. scitex/scholar/url_finder/translators/individual/jisc_historical_texts.py +3 -1
  975. scitex/scholar/url_finder/translators/individual/jstor.py +14 -12
  976. scitex/scholar/url_finder/translators/individual/korean_national_library.py +3 -1
  977. scitex/scholar/url_finder/translators/individual/la_times.py +3 -1
  978. scitex/scholar/url_finder/translators/individual/landesbibliographie_baden_wurttemberg.py +3 -1
  979. scitex/scholar/url_finder/translators/individual/legislative_insight.py +3 -1
  980. scitex/scholar/url_finder/translators/individual/libraries_tasmania.py +3 -1
  981. scitex/scholar/url_finder/translators/individual/library_catalog__koha_.py +3 -1
  982. scitex/scholar/url_finder/translators/individual/lingbuzz.py +2 -2
  983. scitex/scholar/url_finder/translators/individual/max_planck_institute_for_the_history_of_science_virtual_laboratory_library.py +3 -1
  984. scitex/scholar/url_finder/translators/individual/mdpi.py +12 -6
  985. scitex/scholar/url_finder/translators/individual/microbiology_society_journals.py +3 -1
  986. scitex/scholar/url_finder/translators/individual/midas_journals.py +3 -1
  987. scitex/scholar/url_finder/translators/individual/nagoya_university_opac.py +3 -1
  988. scitex/scholar/url_finder/translators/individual/nature_publishing_group.py +32 -19
  989. scitex/scholar/url_finder/translators/individual/ntsb_accident_reports.py +3 -1
  990. scitex/scholar/url_finder/translators/individual/openedition_journals.py +8 -4
  991. scitex/scholar/url_finder/translators/individual/orcid.py +16 -15
  992. scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
  993. scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
  994. scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
  995. scitex/scholar/url_finder/translators/individual/plos.py +9 -12
  996. scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
  997. scitex/scholar/url_finder/translators/individual/primo.py +3 -1
  998. scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
  999. scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
  1000. scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
  1001. scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
  1002. scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
  1003. scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
  1004. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  1005. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  1006. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  1007. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  1008. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  1009. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  1010. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  1011. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  1012. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  1013. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  1014. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  1015. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  1016. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  1017. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  1018. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  1019. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  1020. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  1021. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  1022. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  1023. scitex/scholar/utils/validation/__init__.py +0 -0
  1024. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  1025. scitex/scholar/zotero/__init__.py +1 -1
  1026. scitex/security/cli.py +7 -20
  1027. scitex/security/github.py +45 -32
  1028. scitex/session/__init__.py +8 -9
  1029. scitex/session/_decorator.py +49 -42
  1030. scitex/session/_lifecycle.py +39 -39
  1031. scitex/session/_manager.py +24 -20
  1032. scitex/sh/__init__.py +4 -3
  1033. scitex/sh/_execute.py +10 -7
  1034. scitex/sh/_security.py +3 -3
  1035. scitex/sh/_types.py +2 -3
  1036. scitex/stats/__init__.py +174 -6
  1037. scitex/stats/_schema.py +42 -569
  1038. scitex/stats/auto/__init__.py +188 -0
  1039. scitex/stats/auto/_context.py +331 -0
  1040. scitex/stats/auto/_formatting.py +679 -0
  1041. scitex/stats/auto/_rules.py +901 -0
  1042. scitex/stats/auto/_selector.py +554 -0
  1043. scitex/stats/auto/_styles.py +721 -0
  1044. scitex/stats/correct/__init__.py +4 -4
  1045. scitex/stats/correct/_correct_bonferroni.py +43 -34
  1046. scitex/stats/correct/_correct_fdr.py +14 -40
  1047. scitex/stats/correct/_correct_fdr_.py +39 -46
  1048. scitex/stats/correct/_correct_holm.py +14 -32
  1049. scitex/stats/correct/_correct_sidak.py +36 -21
  1050. scitex/stats/descriptive/_circular.py +20 -21
  1051. scitex/stats/descriptive/_describe.py +19 -5
  1052. scitex/stats/descriptive/_nan.py +5 -7
  1053. scitex/stats/descriptive/_real.py +4 -3
  1054. scitex/stats/effect_sizes/__init__.py +10 -11
  1055. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  1056. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  1057. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  1058. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  1059. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  1060. scitex/stats/io/__init__.py +29 -0
  1061. scitex/stats/io/_bundle.py +156 -0
  1062. scitex/stats/posthoc/__init__.py +3 -3
  1063. scitex/stats/posthoc/_dunnett.py +75 -55
  1064. scitex/stats/posthoc/_games_howell.py +61 -43
  1065. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  1066. scitex/stats/power/__init__.py +2 -2
  1067. scitex/stats/power/_power.py +56 -56
  1068. scitex/stats/tests/__init__.py +1 -1
  1069. scitex/stats/tests/correlation/__init__.py +1 -1
  1070. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  1071. scitex/stats/utils/__init__.py +14 -17
  1072. scitex/stats/utils/_effect_size.py +85 -78
  1073. scitex/stats/utils/_formatters.py +49 -43
  1074. scitex/stats/utils/_normalizers.py +7 -14
  1075. scitex/stats/utils/_power.py +56 -56
  1076. scitex/str/__init__.py +1 -0
  1077. scitex/str/_clean_path.py +3 -3
  1078. scitex/str/_factor_out_digits.py +86 -58
  1079. scitex/str/_format_plot_text.py +180 -111
  1080. scitex/str/_latex.py +19 -19
  1081. scitex/str/_latex_fallback.py +9 -10
  1082. scitex/str/_parse.py +3 -6
  1083. scitex/str/_print_debug.py +13 -13
  1084. scitex/str/_printc.py +2 -0
  1085. scitex/str/_search.py +3 -3
  1086. scitex/template/.legacy/_clone_project.py +9 -13
  1087. scitex/template/__init__.py +10 -2
  1088. scitex/template/_clone_project.py +7 -2
  1089. scitex/template/_copy.py +1 -0
  1090. scitex/template/_customize.py +3 -6
  1091. scitex/template/_git_strategy.py +2 -3
  1092. scitex/template/_rename.py +1 -0
  1093. scitex/template/clone_pip_project.py +6 -7
  1094. scitex/template/clone_research.py +7 -10
  1095. scitex/template/clone_singularity.py +6 -7
  1096. scitex/template/clone_writer_directory.py +6 -7
  1097. scitex/tex/__init__.py +4 -0
  1098. scitex/tex/_export.py +890 -0
  1099. scitex/tex/_preview.py +26 -11
  1100. scitex/tex/_to_vec.py +10 -7
  1101. scitex/torch/__init__.py +11 -1
  1102. scitex/types/_ArrayLike.py +2 -0
  1103. scitex/types/_is_listed_X.py +3 -3
  1104. scitex/units.py +110 -77
  1105. scitex/utils/_compress_hdf5.py +3 -3
  1106. scitex/utils/_email.py +8 -4
  1107. scitex/utils/_notify.py +14 -8
  1108. scitex/utils/_search.py +6 -6
  1109. scitex/utils/_verify_scitex_format.py +17 -42
  1110. scitex/utils/_verify_scitex_format_v01.py +12 -34
  1111. scitex/utils/template.py +4 -3
  1112. scitex/web/__init__.py +7 -1
  1113. scitex/web/_scraping.py +54 -38
  1114. scitex/web/_search_pubmed.py +30 -14
  1115. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1116. scitex/writer/.legacy/_compile.py +18 -28
  1117. scitex/writer/Writer.py +8 -21
  1118. scitex/writer/__init__.py +11 -11
  1119. scitex/writer/_clone_writer_project.py +2 -6
  1120. scitex/writer/_compile/__init__.py +1 -0
  1121. scitex/writer/_compile/_parser.py +1 -0
  1122. scitex/writer/_compile/_runner.py +35 -38
  1123. scitex/writer/_compile/_validator.py +1 -0
  1124. scitex/writer/_compile/manuscript.py +1 -0
  1125. scitex/writer/_compile/revision.py +1 -0
  1126. scitex/writer/_compile/supplementary.py +1 -0
  1127. scitex/writer/_compile_async.py +5 -12
  1128. scitex/writer/_project/__init__.py +1 -0
  1129. scitex/writer/_project/_create.py +10 -25
  1130. scitex/writer/_project/_trees.py +4 -9
  1131. scitex/writer/_project/_validate.py +2 -3
  1132. scitex/writer/_validate_tree_structures.py +7 -18
  1133. scitex/writer/dataclasses/__init__.py +8 -10
  1134. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1135. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1136. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1137. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1138. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1139. scitex/writer/dataclasses/core/_Document.py +2 -3
  1140. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1141. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1142. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1143. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1144. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1145. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1146. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1147. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1148. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1149. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1150. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1151. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1152. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1153. scitex/writer/utils/_parse_script_args.py +20 -23
  1154. scitex/writer/utils/_watch.py +5 -5
  1155. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/METADATA +14 -10
  1156. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/RECORD +1149 -985
  1157. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1158. scitex/io/memo.md +0 -2827
  1159. scitex/plt/_subplots/TODO.md +0 -53
  1160. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +0 -537
  1161. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +0 -1499
  1162. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +0 -431
  1163. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1164. scitex/vis/__init__.py +0 -177
  1165. scitex/vis/editor/_defaults.py +0 -244
  1166. scitex/vis/editor/_edit.py +0 -378
  1167. scitex/vis/editor/flask_editor/__init__.py +0 -21
  1168. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1169. scitex/vis/editor/flask_editor/core.py +0 -152
  1170. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1171. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1172. scitex/vis/editor/flask_editor/templates/html.py +0 -295
  1173. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1174. scitex/vis/editor/flask_editor/templates/styles.py +0 -549
  1175. /scitex/{vis → fig}/README.md +0 -0
  1176. /scitex/{vis → fig}/docs/CANVAS_ARCHITECTURE.md +0 -0
  1177. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/WHEEL +0 -0
  1178. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/entry_points.txt +0 -0
  1179. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/licenses/LICENSE +0 -0
@@ -40,7 +40,7 @@ class ORCIDTranslator:
40
40
  # XML namespaces used in ORCID API responses
41
41
  NAMESPACES = {
42
42
  "work": "http://www.orcid.org/ns/work",
43
- "activities": "http://www.orcid.org/ns/activities"
43
+ "activities": "http://www.orcid.org/ns/activities",
44
44
  }
45
45
 
46
46
  @classmethod
@@ -71,7 +71,7 @@ class ORCIDTranslator:
71
71
  return None
72
72
 
73
73
  # Check for work list
74
- works = await page.query_selector_all('ul#body-work-list > li')
74
+ works = await page.query_selector_all("ul#body-work-list > li")
75
75
  if works:
76
76
  return "multiple"
77
77
 
@@ -96,12 +96,13 @@ class ORCIDTranslator:
96
96
  return None
97
97
 
98
98
  # Remove URL prefix if present and clean extra UI text
99
- orcid = orcid_text.replace('https://orcid.org/', '').strip()
99
+ orcid = orcid_text.replace("https://orcid.org/", "").strip()
100
100
 
101
101
  # Extract just the ORCID ID pattern (0000-0000-0000-0000)
102
102
  # Remove any extra text like "content_copyprint" that might be from UI elements
103
103
  import re
104
- match = re.search(r'\d{4}-\d{4}-\d{4}-\d{3}[\dX]', orcid)
104
+
105
+ match = re.search(r"\d{4}-\d{4}-\d{4}-\d{3}[\dX]", orcid)
105
106
  if match:
106
107
  return match.group(0)
107
108
 
@@ -129,12 +130,12 @@ class ORCIDTranslator:
129
130
  put_codes = {}
130
131
 
131
132
  # Find all work groups
132
- for group in root.findall('.//activities:group', cls.NAMESPACES):
133
+ for group in root.findall(".//activities:group", cls.NAMESPACES):
133
134
  # Get first work summary in the group
134
- work_summary = group.find('./work:work-summary', cls.NAMESPACES)
135
+ work_summary = group.find("./work:work-summary", cls.NAMESPACES)
135
136
  if work_summary is not None:
136
- code = work_summary.get('put-code')
137
- title_elem = work_summary.find('.//work:title', cls.NAMESPACES)
137
+ code = work_summary.get("put-code")
138
+ title_elem = work_summary.find(".//work:title", cls.NAMESPACES)
138
139
  if code and title_elem is not None and title_elem.text:
139
140
  put_codes[code] = title_elem.text.strip()
140
141
 
@@ -153,9 +154,7 @@ class ORCIDTranslator:
153
154
  """
154
155
  url = f"{cls.API_BASE}/{orcid}/work/{put_code}"
155
156
 
156
- headers = {
157
- "Accept": "application/vnd.citationstyles.csl+json"
158
- }
157
+ headers = {"Accept": "application/vnd.citationstyles.csl+json"}
159
158
 
160
159
  try:
161
160
  async with httpx.AsyncClient() as client:
@@ -266,14 +265,16 @@ if __name__ == "__main__":
266
265
  # Fetch metadata for first work
267
266
  first_code = list(works.keys())[0]
268
267
  print(f"\nFetching metadata for work {first_code}...")
269
- metadata = await ORCIDTranslator.fetch_work_metadata(orcid, first_code)
268
+ metadata = await ORCIDTranslator.fetch_work_metadata(
269
+ orcid, first_code
270
+ )
270
271
 
271
272
  if metadata:
272
273
  print(f"Metadata keys: {list(metadata.keys())}")
273
- if 'title' in metadata:
274
+ if "title" in metadata:
274
275
  print(f"Title: {metadata['title']}")
275
- if 'author' in metadata:
276
- authors = metadata['author']
276
+ if "author" in metadata:
277
+ authors = metadata["author"]
277
278
  if isinstance(authors, list) and authors:
278
279
  print(f"First author: {authors[0]}")
279
280
 
@@ -71,21 +71,23 @@ class OxfordTranslator(BaseTranslator):
71
71
  'a[href*="/pdf/"]',
72
72
  'a:has-text("Download PDF")',
73
73
  'a:has-text("PDF")',
74
- '.download-pdf a',
75
- 'a.pdf-link'
74
+ ".download-pdf a",
75
+ "a.pdf-link",
76
76
  ]
77
77
 
78
78
  for selector in pdf_selectors:
79
79
  try:
80
- pdf_link = await page.locator(selector).first.get_attribute('href', timeout=1000)
80
+ pdf_link = await page.locator(selector).first.get_attribute(
81
+ "href", timeout=1000
82
+ )
81
83
  if pdf_link:
82
84
  # Make absolute URL if needed
83
- if pdf_link.startswith('/'):
84
- base_url = await page.evaluate('window.location.origin')
85
+ if pdf_link.startswith("/"):
86
+ base_url = await page.evaluate("window.location.origin")
85
87
  pdf_link = f"{base_url}{pdf_link}"
86
- elif not pdf_link.startswith('http'):
87
- base_url = await page.evaluate('window.location.href')
88
- base_url = re.sub(r'/[^/]*$', '', base_url)
88
+ elif not pdf_link.startswith("http"):
89
+ base_url = await page.evaluate("window.location.href")
90
+ base_url = re.sub(r"/[^/]*$", "", base_url)
89
91
  pdf_link = f"{base_url}/{pdf_link}"
90
92
 
91
93
  pdf_urls.append(pdf_link)
@@ -102,19 +104,21 @@ class OxfordTranslator(BaseTranslator):
102
104
  'a[href*="lookinside"]',
103
105
  'a:has-text("Look Inside")',
104
106
  'a:has-text("Preview")',
105
- '.book-preview a'
107
+ ".book-preview a",
106
108
  ]
107
109
 
108
110
  for selector in preview_selectors:
109
111
  try:
110
- preview_link = await page.locator(selector).first.get_attribute('href', timeout=1000)
111
- if preview_link and '.pdf' in preview_link.lower():
112
- if preview_link.startswith('/'):
113
- base_url = await page.evaluate('window.location.origin')
112
+ preview_link = await page.locator(selector).first.get_attribute(
113
+ "href", timeout=1000
114
+ )
115
+ if preview_link and ".pdf" in preview_link.lower():
116
+ if preview_link.startswith("/"):
117
+ base_url = await page.evaluate("window.location.origin")
114
118
  preview_link = f"{base_url}{preview_link}"
115
- elif not preview_link.startswith('http'):
116
- base_url = await page.evaluate('window.location.href')
117
- base_url = re.sub(r'/[^/]*$', '', base_url)
119
+ elif not preview_link.startswith("http"):
120
+ base_url = await page.evaluate("window.location.href")
121
+ base_url = re.sub(r"/[^/]*$", "", base_url)
118
122
  preview_link = f"{base_url}/{preview_link}"
119
123
 
120
124
  pdf_urls.append(preview_link)
@@ -127,13 +131,15 @@ class OxfordTranslator(BaseTranslator):
127
131
  # Method 3: Extract ISBN and attempt to construct PDF URL
128
132
  # (Usually doesn't work for OUP, but worth trying)
129
133
  try:
130
- isbn_text = await page.locator('p:has-text("ISBN:")').first.inner_text(timeout=2000)
131
- isbn_match = re.search(r'ISBN:\s*(\d{10,13})', isbn_text)
134
+ isbn_text = await page.locator('p:has-text("ISBN:")').first.inner_text(
135
+ timeout=2000
136
+ )
137
+ isbn_match = re.search(r"ISBN:\s*(\d{10,13})", isbn_text)
132
138
  if isbn_match:
133
139
  isbn = isbn_match.group(1)
134
140
  # Some academic publishers provide PDFs via ISBN
135
141
  # This is speculative and may not work
136
- base_url = await page.evaluate('window.location.origin')
142
+ base_url = await page.evaluate("window.location.origin")
137
143
  potential_pdf = f"{base_url}/academic/pdf/{isbn}.pdf"
138
144
  # We don't add this speculatively without verification
139
145
  except Exception:
@@ -12,7 +12,9 @@ class OxfordDictionariesPremiumTranslator(BaseTranslator):
12
12
  """Oxford Dictionaries Premium."""
13
13
 
14
14
  LABEL = "Oxford Dictionaries Premium"
15
- URL_TARGET_PATTERN = r"^https?://premium\.oxforddictionaries\.com/(translate|definition)/"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://premium\.oxforddictionaries\.com/(translate|definition)/"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class OzonRuTranslator(BaseTranslator):
12
12
  """OZON.ru."""
13
13
 
14
14
  LABEL = "OZON.ru"
15
- URL_TARGET_PATTERN = r"^https?://www\.ozon\.ru/(context/detail/id/|\?context=search)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://www\.ozon\.ru/(context/detail/id/|\?context=search)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -60,7 +60,7 @@ class PLoSTranslator(BaseTranslator):
60
60
  try:
61
61
  pdf_url = await page.locator(
62
62
  'meta[name="citation_pdf_url"]'
63
- ).first.get_attribute('content', timeout=3000)
63
+ ).first.get_attribute("content", timeout=3000)
64
64
  if pdf_url:
65
65
  pdf_urls.append(pdf_url)
66
66
  return pdf_urls
@@ -72,11 +72,11 @@ class PLoSTranslator(BaseTranslator):
72
72
  try:
73
73
  pdf_link = await page.locator(
74
74
  'a[href*="/article/file"][href*="type=printable"]'
75
- ).first.get_attribute('href', timeout=2000)
75
+ ).first.get_attribute("href", timeout=2000)
76
76
  if pdf_link:
77
77
  # Make absolute URL if needed
78
- if pdf_link.startswith('/'):
79
- base_url = await page.evaluate('window.location.origin')
78
+ if pdf_link.startswith("/"):
79
+ base_url = await page.evaluate("window.location.origin")
80
80
  pdf_link = f"{base_url}{pdf_link}"
81
81
  pdf_urls.append(pdf_link)
82
82
  return pdf_urls
@@ -86,18 +86,15 @@ class PLoSTranslator(BaseTranslator):
86
86
  # Method 3: Construct PDF URL from DOI if present
87
87
  # Pattern: https://journals.plos.org/journal/article/file?id=DOI&type=printable
88
88
  try:
89
- doi = await page.locator(
90
- 'meta[name="citation_doi"]'
91
- ).first.get_attribute('content', timeout=2000)
92
- current_url = await page.evaluate('window.location.href')
89
+ doi = await page.locator('meta[name="citation_doi"]').first.get_attribute(
90
+ "content", timeout=2000
91
+ )
92
+ current_url = await page.evaluate("window.location.href")
93
93
 
94
94
  if doi:
95
95
  # Extract journal name from URL
96
96
  # Pattern: journals.plos.org/{journal}/article?id=...
97
- journal_match = re.search(
98
- r'journals\.plos\.org/([^/]+)/',
99
- current_url
100
- )
97
+ journal_match = re.search(r"journals\.plos\.org/([^/]+)/", current_url)
101
98
  if journal_match:
102
99
  journal = journal_match.group(1)
103
100
  pdf_url = f"https://journals.plos.org/{journal}/article/file?id={doi}&type=printable"
@@ -12,7 +12,9 @@ class PolygonTranslator(BaseTranslator):
12
12
  """Polygon."""
13
13
 
14
14
  LABEL = "Polygon"
15
- URL_TARGET_PATTERN = r"^https?://(www\.)?(polygon|heroesneverdie|riftherald|theflyingcourier)\.com"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://(www\.)?(polygon|heroesneverdie|riftherald|theflyingcourier)\.com"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class PrimoTranslator(BaseTranslator):
12
12
  """Primo."""
13
13
 
14
14
  LABEL = "Primo"
15
- URL_TARGET_PATTERN = r"/primo_library/|/nebis/|^https?://www\.recherche-portal\.ch/zbz/"
15
+ URL_TARGET_PATTERN = (
16
+ r"/primo_library/|/nebis/|^https?://www\.recherche-portal\.ch/zbz/"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class ProjectMUSETranslator(BaseTranslator):
12
12
  """Project MUSE."""
13
13
 
14
14
  LABEL = "Project MUSE"
15
- URL_TARGET_PATTERN = r"^https?://[^/]*muse\.jhu\.edu/(book/|pub/|article/|issue/|search\?)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://[^/]*muse\.jhu\.edu/(book/|pub/|article/|issue/|search\?)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class PubFactoryJournalsTranslator(BaseTranslator):
12
12
  """PubFactory Journals."""
13
13
 
14
14
  LABEL = "PubFactory Journals"
15
- URL_TARGET_PATTERN = r"^https://([^/]+/view/journals/.+\.xml|[^.]*journals\.[^/]+/search)\b"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https://([^/]+/view/journals/.+\.xml|[^.]*journals\.[^/]+/search)\b"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -56,37 +56,37 @@ class PubMedTranslator(BaseTranslator):
56
56
  """
57
57
  try:
58
58
  content = await page.content()
59
- soup = BeautifulSoup(content, 'html.parser')
59
+ soup = BeautifulSoup(content, "html.parser")
60
60
 
61
61
  # Strategy 1: meta tags
62
- for meta_name in ['ncbi_uidlist', 'ncbi_article_id', 'uid']:
63
- meta = soup.find('meta', attrs={'name': meta_name})
64
- if meta and meta.get('content'):
65
- pmid = meta['content'].strip()
62
+ for meta_name in ["ncbi_uidlist", "ncbi_article_id", "uid"]:
63
+ meta = soup.find("meta", attrs={"name": meta_name})
64
+ if meta and meta.get("content"):
65
+ pmid = meta["content"].strip()
66
66
  if pmid.isdigit():
67
67
  return pmid
68
68
 
69
69
  # Strategy 2: input element
70
- input_elem = soup.find('input', attrs={'id': 'absid'})
71
- if input_elem and input_elem.get('value'):
72
- pmid = input_elem['value'].strip()
70
+ input_elem = soup.find("input", attrs={"id": "absid"})
71
+ if input_elem and input_elem.get("value"):
72
+ pmid = input_elem["value"].strip()
73
73
  if pmid.isdigit():
74
74
  return pmid
75
75
 
76
76
  # Strategy 3: link href patterns
77
- for rel in ['canonical', 'handheld']:
78
- link = soup.find('link', attrs={'rel': rel})
79
- if link and link.get('href'):
80
- match = re.search(r'/(\d+)(?:/|$)', link['href'])
77
+ for rel in ["canonical", "handheld"]:
78
+ link = soup.find("link", attrs={"rel": rel})
79
+ if link and link.get("href"):
80
+ match = re.search(r"/(\d+)(?:/|$)", link["href"])
81
81
  if match:
82
82
  return match.group(1)
83
83
 
84
84
  # Strategy 4: bookshelf PubMed record links
85
- maincontent = soup.find(id='maincontent')
85
+ maincontent = soup.find(id="maincontent")
86
86
  if maincontent:
87
- pubmed_link = maincontent.find('a', attrs={
88
- 'title': re.compile(r'PubMed record')
89
- })
87
+ pubmed_link = maincontent.find(
88
+ "a", attrs={"title": re.compile(r"PubMed record")}
89
+ )
90
90
  if pubmed_link:
91
91
  pmid = pubmed_link.get_text(strip=True)
92
92
  if pmid.isdigit():
@@ -94,11 +94,11 @@ class PubMedTranslator(BaseTranslator):
94
94
 
95
95
  # Strategy 5: URL extraction
96
96
  url = page.url
97
- match = re.search(r'/pubmed/(\d+)', url)
97
+ match = re.search(r"/pubmed/(\d+)", url)
98
98
  if match:
99
99
  return match.group(1)
100
100
 
101
- match = re.search(r'pubmed\.ncbi\.nlm\.nih\.gov/(\d+)', url)
101
+ match = re.search(r"pubmed\.ncbi\.nlm\.nih\.gov/(\d+)", url)
102
102
  if match:
103
103
  return match.group(1)
104
104
 
@@ -119,11 +119,11 @@ class PubMedTranslator(BaseTranslator):
119
119
  """
120
120
  try:
121
121
  params = {
122
- 'db': 'PubMed',
123
- 'tool': 'ZoteroTranslatorsPython',
124
- 'retmode': 'xml',
125
- 'rettype': 'citation',
126
- 'id': pmid
122
+ "db": "PubMed",
123
+ "tool": "ZoteroTranslatorsPython",
124
+ "retmode": "xml",
125
+ "rettype": "citation",
126
+ "id": pmid,
127
127
  }
128
128
 
129
129
  async with httpx.AsyncClient(timeout=30.0) as client:
@@ -132,13 +132,16 @@ class PubMedTranslator(BaseTranslator):
132
132
  xml_text = response.text
133
133
 
134
134
  # Check if valid PubMed data was returned (case-insensitive)
135
- if 'pubmedarticle' not in xml_text.lower() and 'pubmedbookarticle' not in xml_text.lower():
135
+ if (
136
+ "pubmedarticle" not in xml_text.lower()
137
+ and "pubmedbookarticle" not in xml_text.lower()
138
+ ):
136
139
  logger.warning(f"No PubMed data found for PMID {pmid}")
137
140
  return None
138
141
 
139
142
  # Parse XML to extract metadata
140
143
  metadata = cls._parse_pubmed_xml(xml_text)
141
- metadata['pmid'] = pmid
144
+ metadata["pmid"] = pmid
142
145
  return metadata
143
146
 
144
147
  except Exception as e:
@@ -155,54 +158,56 @@ class PubMedTranslator(BaseTranslator):
155
158
  Returns:
156
159
  Dictionary containing parsed metadata
157
160
  """
158
- soup = BeautifulSoup(xml_text, 'xml')
161
+ soup = BeautifulSoup(xml_text, "xml")
159
162
  metadata = {}
160
163
 
161
164
  try:
162
165
  # Extract article title
163
- article_title = soup.find('ArticleTitle')
166
+ article_title = soup.find("ArticleTitle")
164
167
  if article_title:
165
- metadata['title'] = article_title.get_text(strip=True)
168
+ metadata["title"] = article_title.get_text(strip=True)
166
169
 
167
170
  # Extract authors
168
171
  authors = []
169
- for author in soup.find_all('Author'):
170
- last_name = author.find('LastName')
171
- fore_name = author.find('ForeName')
172
+ for author in soup.find_all("Author"):
173
+ last_name = author.find("LastName")
174
+ fore_name = author.find("ForeName")
172
175
  if last_name:
173
176
  author_name = last_name.get_text(strip=True)
174
177
  if fore_name:
175
178
  author_name = f"{fore_name.get_text(strip=True)} {author_name}"
176
179
  authors.append(author_name)
177
- metadata['authors'] = authors
180
+ metadata["authors"] = authors
178
181
 
179
182
  # Extract DOI
180
- article_ids = soup.find_all('ArticleId', attrs={'IdType': 'doi'})
183
+ article_ids = soup.find_all("ArticleId", attrs={"IdType": "doi"})
181
184
  if article_ids:
182
- metadata['doi'] = article_ids[0].get_text(strip=True)
185
+ metadata["doi"] = article_ids[0].get_text(strip=True)
183
186
 
184
187
  # Extract abstract
185
- abstract = soup.find('AbstractText')
188
+ abstract = soup.find("AbstractText")
186
189
  if abstract:
187
- metadata['abstract'] = abstract.get_text(strip=True)
190
+ metadata["abstract"] = abstract.get_text(strip=True)
188
191
 
189
192
  # Extract journal information
190
- journal = soup.find('Journal')
193
+ journal = soup.find("Journal")
191
194
  if journal:
192
- journal_title = journal.find('Title')
195
+ journal_title = journal.find("Title")
193
196
  if journal_title:
194
- metadata['journal'] = journal_title.get_text(strip=True)
197
+ metadata["journal"] = journal_title.get_text(strip=True)
195
198
 
196
- journal_abbrev = journal.find('ISOAbbreviation')
199
+ journal_abbrev = journal.find("ISOAbbreviation")
197
200
  if journal_abbrev:
198
- metadata['journal_abbreviation'] = journal_abbrev.get_text(strip=True)
201
+ metadata["journal_abbreviation"] = journal_abbrev.get_text(
202
+ strip=True
203
+ )
199
204
 
200
205
  # Extract publication date
201
- pub_date = soup.find('PubDate')
206
+ pub_date = soup.find("PubDate")
202
207
  if pub_date:
203
- year = pub_date.find('Year')
204
- month = pub_date.find('Month')
205
- day = pub_date.find('Day')
208
+ year = pub_date.find("Year")
209
+ month = pub_date.find("Month")
210
+ day = pub_date.find("Day")
206
211
  date_parts = []
207
212
  if year:
208
213
  date_parts.append(year.get_text(strip=True))
@@ -210,21 +215,21 @@ class PubMedTranslator(BaseTranslator):
210
215
  date_parts.append(month.get_text(strip=True))
211
216
  if day:
212
217
  date_parts.append(day.get_text(strip=True))
213
- metadata['date'] = '-'.join(date_parts)
218
+ metadata["date"] = "-".join(date_parts)
214
219
 
215
220
  # Extract volume and issue
216
- volume = soup.find('Volume')
221
+ volume = soup.find("Volume")
217
222
  if volume:
218
- metadata['volume'] = volume.get_text(strip=True)
223
+ metadata["volume"] = volume.get_text(strip=True)
219
224
 
220
- issue = soup.find('Issue')
225
+ issue = soup.find("Issue")
221
226
  if issue:
222
- metadata['issue'] = issue.get_text(strip=True)
227
+ metadata["issue"] = issue.get_text(strip=True)
223
228
 
224
229
  # Extract pages
225
- medline_pgn = soup.find('MedlinePgn')
230
+ medline_pgn = soup.find("MedlinePgn")
226
231
  if medline_pgn:
227
- metadata['pages'] = medline_pgn.get_text(strip=True)
232
+ metadata["pages"] = medline_pgn.get_text(strip=True)
228
233
 
229
234
  except Exception as e:
230
235
  logger.error(f"Error parsing PubMed XML: {e}")
@@ -242,31 +247,31 @@ class PubMedTranslator(BaseTranslator):
242
247
 
243
248
  try:
244
249
  content = await page.content()
245
- soup = BeautifulSoup(content, 'html.parser')
250
+ soup = BeautifulSoup(content, "html.parser")
246
251
 
247
252
  # Look for "Full Text Links" section
248
- full_text_section = soup.find('div', class_=re.compile(r'full-text-links'))
253
+ full_text_section = soup.find("div", class_=re.compile(r"full-text-links"))
249
254
  if full_text_section:
250
- links = full_text_section.find_all('a', href=True)
255
+ links = full_text_section.find_all("a", href=True)
251
256
  for link in links:
252
- href = link['href']
257
+ href = link["href"]
253
258
  # Filter for likely PDF links
254
- if any(x in href.lower() for x in ['.pdf', 'download', 'pdf']):
259
+ if any(x in href.lower() for x in [".pdf", "download", "pdf"]):
255
260
  pdf_urls.append(href)
256
261
 
257
262
  # Look for LinkOut resources
258
- linkout_section = soup.find('div', attrs={'id': 'link-out'})
263
+ linkout_section = soup.find("div", attrs={"id": "link-out"})
259
264
  if linkout_section:
260
- links = linkout_section.find_all('a', href=True)
265
+ links = linkout_section.find_all("a", href=True)
261
266
  for link in links:
262
- href = link['href']
263
- if 'pdf' in href.lower():
267
+ href = link["href"]
268
+ if "pdf" in href.lower():
264
269
  pdf_urls.append(href)
265
270
 
266
271
  # PMC (PubMed Central) link - free full text
267
- pmc_link = soup.find('a', attrs={'data-ga-action': 'PMC article'})
268
- if pmc_link and pmc_link.get('href'):
269
- pdf_urls.append(pmc_link['href'])
272
+ pmc_link = soup.find("a", attrs={"data-ga-action": "PMC article"})
273
+ if pmc_link and pmc_link.get("href"):
274
+ pdf_urls.append(pmc_link["href"])
270
275
 
271
276
  except Exception as e:
272
277
  logger.error(f"Error extracting PDF URLs: {e}")
@@ -292,7 +297,7 @@ async def main():
292
297
  page = await browser.new_page()
293
298
 
294
299
  try:
295
- await page.goto(test_url, wait_until='domcontentloaded', timeout=30000)
300
+ await page.goto(test_url, wait_until="domcontentloaded", timeout=30000)
296
301
 
297
302
  # Extract PMID
298
303
  pmid = await PubMedTranslator.extract_pmid_from_page(page)
@@ -321,4 +326,5 @@ async def main():
321
326
 
322
327
  if __name__ == "__main__":
323
328
  import asyncio
329
+
324
330
  asyncio.run(main())
@@ -12,7 +12,9 @@ class PubMedCentralTranslator(BaseTranslator):
12
12
  """PubMed Central."""
13
13
 
14
14
  LABEL = "PubMed Central"
15
- URL_TARGET_PATTERN = r"^https://(www\.)?(pmc\.ncbi\.nlm\.nih\.gov/|ncbi\.nlm\.nih\.gov/pmc)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https://(www\.)?(pmc\.ncbi\.nlm\.nih\.gov/|ncbi\.nlm\.nih\.gov/pmc)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -37,7 +39,7 @@ class PubMedCentralTranslator(BaseTranslator):
37
39
  current_url = page.url
38
40
 
39
41
  # Check if already viewing a PDF
40
- if re.search(r'/pdf/.+\.pdf', current_url):
42
+ if re.search(r"/pdf/.+\.pdf", current_url):
41
43
  return [current_url]
42
44
 
43
45
  # Try multiple selectors (from JavaScript translator lines 70-74)
@@ -53,12 +55,12 @@ class PubMedCentralTranslator(BaseTranslator):
53
55
  try:
54
56
  elements = await page.query_selector_all(selector)
55
57
  for element in elements:
56
- href = await element.get_attribute('href')
57
- if href and '.pdf' in href.lower():
58
+ href = await element.get_attribute("href")
59
+ if href and ".pdf" in href.lower():
58
60
  # Make absolute URL if relative
59
- if href.startswith('/'):
61
+ if href.startswith("/"):
60
62
  href = f"https://www.ncbi.nlm.nih.gov{href}"
61
- elif not href.startswith('http'):
63
+ elif not href.startswith("http"):
62
64
  href = f"https://www.ncbi.nlm.nih.gov/pmc/{href}"
63
65
 
64
66
  if href not in pdf_urls:
@@ -12,7 +12,9 @@ class RechtspraakNlTranslator(BaseTranslator):
12
12
  """Rechtspraak.nl."""
13
13
 
14
14
  LABEL = "Rechtspraak.nl"
15
- URL_TARGET_PATTERN = r"^https?://(uitspraken\.rechtspraak|linkeddata\.overheid)\.nl/"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://(uitspraken\.rechtspraak|linkeddata\.overheid)\.nl/"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool: