scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +25 -10
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/audio/README.md +52 -0
- scitex/audio/__init__.py +384 -0
- scitex/audio/__main__.py +129 -0
- scitex/audio/_tts.py +334 -0
- scitex/audio/engines/__init__.py +44 -0
- scitex/audio/engines/base.py +275 -0
- scitex/audio/engines/elevenlabs_engine.py +143 -0
- scitex/audio/engines/gtts_engine.py +162 -0
- scitex/audio/engines/pyttsx3_engine.py +131 -0
- scitex/audio/mcp_server.py +757 -0
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dev/plt/__init__.py +272 -0
- scitex/dev/plt/plot_mpl_axhline.py +28 -0
- scitex/dev/plt/plot_mpl_axhspan.py +28 -0
- scitex/dev/plt/plot_mpl_axvline.py +28 -0
- scitex/dev/plt/plot_mpl_axvspan.py +28 -0
- scitex/dev/plt/plot_mpl_bar.py +29 -0
- scitex/dev/plt/plot_mpl_barh.py +29 -0
- scitex/dev/plt/plot_mpl_boxplot.py +28 -0
- scitex/dev/plt/plot_mpl_contour.py +31 -0
- scitex/dev/plt/plot_mpl_contourf.py +31 -0
- scitex/dev/plt/plot_mpl_errorbar.py +30 -0
- scitex/dev/plt/plot_mpl_eventplot.py +28 -0
- scitex/dev/plt/plot_mpl_fill.py +30 -0
- scitex/dev/plt/plot_mpl_fill_between.py +31 -0
- scitex/dev/plt/plot_mpl_hexbin.py +28 -0
- scitex/dev/plt/plot_mpl_hist.py +28 -0
- scitex/dev/plt/plot_mpl_hist2d.py +28 -0
- scitex/dev/plt/plot_mpl_imshow.py +29 -0
- scitex/dev/plt/plot_mpl_pcolormesh.py +31 -0
- scitex/dev/plt/plot_mpl_pie.py +29 -0
- scitex/dev/plt/plot_mpl_plot.py +29 -0
- scitex/dev/plt/plot_mpl_quiver.py +31 -0
- scitex/dev/plt/plot_mpl_scatter.py +28 -0
- scitex/dev/plt/plot_mpl_stackplot.py +31 -0
- scitex/dev/plt/plot_mpl_stem.py +29 -0
- scitex/dev/plt/plot_mpl_step.py +29 -0
- scitex/dev/plt/plot_mpl_violinplot.py +28 -0
- scitex/dev/plt/plot_sns_barplot.py +29 -0
- scitex/dev/plt/plot_sns_boxplot.py +29 -0
- scitex/dev/plt/plot_sns_heatmap.py +28 -0
- scitex/dev/plt/plot_sns_histplot.py +29 -0
- scitex/dev/plt/plot_sns_kdeplot.py +29 -0
- scitex/dev/plt/plot_sns_lineplot.py +31 -0
- scitex/dev/plt/plot_sns_scatterplot.py +29 -0
- scitex/dev/plt/plot_sns_stripplot.py +29 -0
- scitex/dev/plt/plot_sns_swarmplot.py +29 -0
- scitex/dev/plt/plot_sns_violinplot.py +29 -0
- scitex/dev/plt/plot_stx_bar.py +29 -0
- scitex/dev/plt/plot_stx_barh.py +29 -0
- scitex/dev/plt/plot_stx_box.py +28 -0
- scitex/dev/plt/plot_stx_boxplot.py +28 -0
- scitex/dev/plt/plot_stx_conf_mat.py +28 -0
- scitex/dev/plt/plot_stx_contour.py +31 -0
- scitex/dev/plt/plot_stx_ecdf.py +28 -0
- scitex/dev/plt/plot_stx_errorbar.py +30 -0
- scitex/dev/plt/plot_stx_fill_between.py +31 -0
- scitex/dev/plt/plot_stx_fillv.py +28 -0
- scitex/dev/plt/plot_stx_heatmap.py +28 -0
- scitex/dev/plt/plot_stx_image.py +28 -0
- scitex/dev/plt/plot_stx_imshow.py +28 -0
- scitex/dev/plt/plot_stx_joyplot.py +28 -0
- scitex/dev/plt/plot_stx_kde.py +28 -0
- scitex/dev/plt/plot_stx_line.py +28 -0
- scitex/dev/plt/plot_stx_mean_ci.py +28 -0
- scitex/dev/plt/plot_stx_mean_std.py +28 -0
- scitex/dev/plt/plot_stx_median_iqr.py +28 -0
- scitex/dev/plt/plot_stx_raster.py +28 -0
- scitex/dev/plt/plot_stx_rectangle.py +28 -0
- scitex/dev/plt/plot_stx_scatter.py +29 -0
- scitex/dev/plt/plot_stx_shaded_line.py +29 -0
- scitex/dev/plt/plot_stx_violin.py +28 -0
- scitex/dev/plt/plot_stx_violinplot.py +28 -0
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/fig/__init__.py +352 -0
- scitex/{vis → fig}/backend/__init__.py +3 -3
- scitex/{vis/backend/export.py → fig/backend/_export.py} +1 -1
- scitex/{vis/backend/parser.py → fig/backend/_parser.py} +2 -4
- scitex/{vis/backend/render.py → fig/backend/_render.py} +1 -1
- scitex/{vis → fig}/canvas.py +16 -4
- scitex/{vis → fig}/editor/__init__.py +0 -0
- scitex/{vis → fig}/editor/_dearpygui_editor.py +450 -304
- scitex/fig/editor/_defaults.py +300 -0
- scitex/fig/editor/_edit.py +751 -0
- scitex/{vis → fig}/editor/_flask_editor.py +8 -8
- scitex/{vis → fig}/editor/_mpl_editor.py +63 -48
- scitex/{vis → fig}/editor/_qt_editor.py +391 -160
- scitex/{vis → fig}/editor/_tkinter_editor.py +146 -89
- scitex/fig/editor/flask_editor/__init__.py +21 -0
- scitex/fig/editor/flask_editor/_bbox.py +1276 -0
- scitex/fig/editor/flask_editor/_core.py +624 -0
- scitex/fig/editor/flask_editor/_plotter.py +601 -0
- scitex/fig/editor/flask_editor/_renderer.py +739 -0
- scitex/{vis/editor/flask_editor/utils.py → fig/editor/flask_editor/_utils.py} +13 -14
- scitex/{vis → fig}/editor/flask_editor/templates/__init__.py +6 -6
- scitex/fig/editor/flask_editor/templates/_html.py +834 -0
- scitex/fig/editor/flask_editor/templates/_scripts.py +3136 -0
- scitex/fig/editor/flask_editor/templates/_styles.py +1346 -0
- scitex/{vis → fig}/io/__init__.py +18 -6
- scitex/fig/io/_bundle.py +973 -0
- scitex/{vis/io/canvas.py → fig/io/_canvas.py} +9 -5
- scitex/{vis/io/data.py → fig/io/_data.py} +14 -10
- scitex/{vis/io/directory.py → fig/io/_directory.py} +7 -4
- scitex/{vis/io/export.py → fig/io/_export.py} +16 -13
- scitex/{vis/io/load.py → fig/io/_load.py} +2 -2
- scitex/{vis/io/panel.py → fig/io/_panel.py} +22 -14
- scitex/{vis/io/save.py → fig/io/_save.py} +1 -1
- scitex/{vis → fig}/model/__init__.py +8 -8
- scitex/{vis/model/annotations.py → fig/model/_annotations.py} +3 -5
- scitex/{vis/model/axes.py → fig/model/_axes.py} +2 -2
- scitex/{vis/model/figure.py → fig/model/_figure.py} +1 -1
- scitex/{vis/model/guides.py → fig/model/_guides.py} +2 -2
- scitex/{vis/model/plot.py → fig/model/_plot.py} +3 -5
- scitex/{vis/model/plot_types.py → fig/model/_plot_types.py} +0 -0
- scitex/{vis/model/styles.py → fig/model/_styles.py} +1 -1
- scitex/{vis → fig}/utils/__init__.py +3 -3
- scitex/{vis/utils/defaults.py → fig/utils/_defaults.py} +1 -2
- scitex/{vis/utils/validate.py → fig/utils/_validate.py} +3 -9
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +12 -27
- scitex/io/_bundle.py +434 -0
- scitex/io/_flush.py +5 -2
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +104 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +11 -14
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +6 -11
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +7 -4
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
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- scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
- scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
- scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
- scitex/scholar/url_finder/translators/individual/plos.py +9 -12
- scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
- scitex/scholar/url_finder/translators/individual/primo.py +3 -1
- scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
- scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
- scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
- scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
- scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
- scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
- scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
- scitex/scholar/url_finder/translators/individual/sora.py +3 -1
- scitex/scholar/url_finder/translators/individual/springer.py +15 -11
- scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
- scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
- scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
- scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
- scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
- scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
- scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
- scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
- scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
- scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
- scitex/scholar/utils/text/_TextNormalizer.py +249 -176
- scitex/scholar/utils/validation/DOIValidator.py +31 -28
- scitex/scholar/utils/validation/__init__.py +0 -0
- scitex/scholar/utils/validation/validate_library_dois.py +61 -57
- scitex/scholar/zotero/__init__.py +1 -1
- scitex/security/cli.py +7 -20
- scitex/security/github.py +45 -32
- scitex/session/__init__.py +8 -9
- scitex/session/_decorator.py +49 -42
- scitex/session/_lifecycle.py +39 -39
- scitex/session/_manager.py +24 -20
- scitex/sh/__init__.py +4 -3
- scitex/sh/_execute.py +10 -7
- scitex/sh/_security.py +3 -3
- scitex/sh/_types.py +2 -3
- scitex/stats/__init__.py +174 -6
- scitex/stats/_schema.py +42 -569
- scitex/stats/auto/__init__.py +188 -0
- scitex/stats/auto/_context.py +331 -0
- scitex/stats/auto/_formatting.py +679 -0
- scitex/stats/auto/_rules.py +901 -0
- scitex/stats/auto/_selector.py +554 -0
- scitex/stats/auto/_styles.py +721 -0
- scitex/stats/correct/__init__.py +4 -4
- scitex/stats/correct/_correct_bonferroni.py +43 -34
- scitex/stats/correct/_correct_fdr.py +14 -40
- scitex/stats/correct/_correct_fdr_.py +39 -46
- scitex/stats/correct/_correct_holm.py +14 -32
- scitex/stats/correct/_correct_sidak.py +36 -21
- scitex/stats/descriptive/_circular.py +20 -21
- scitex/stats/descriptive/_describe.py +19 -5
- scitex/stats/descriptive/_nan.py +5 -7
- scitex/stats/descriptive/_real.py +4 -3
- scitex/stats/effect_sizes/__init__.py +10 -11
- scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
- scitex/stats/effect_sizes/_cohens_d.py +30 -31
- scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
- scitex/stats/effect_sizes/_eta_squared.py +23 -27
- scitex/stats/effect_sizes/_prob_superiority.py +18 -21
- scitex/stats/io/__init__.py +29 -0
- scitex/stats/io/_bundle.py +156 -0
- scitex/stats/posthoc/__init__.py +3 -3
- scitex/stats/posthoc/_dunnett.py +75 -55
- scitex/stats/posthoc/_games_howell.py +61 -43
- scitex/stats/posthoc/_tukey_hsd.py +42 -34
- scitex/stats/power/__init__.py +2 -2
- scitex/stats/power/_power.py +56 -56
- scitex/stats/tests/__init__.py +1 -1
- scitex/stats/tests/correlation/__init__.py +1 -1
- scitex/stats/tests/correlation/_test_pearson.py +28 -38
- scitex/stats/utils/__init__.py +14 -17
- scitex/stats/utils/_effect_size.py +85 -78
- scitex/stats/utils/_formatters.py +49 -43
- scitex/stats/utils/_normalizers.py +7 -14
- scitex/stats/utils/_power.py +56 -56
- scitex/str/__init__.py +1 -0
- scitex/str/_clean_path.py +3 -3
- scitex/str/_factor_out_digits.py +86 -58
- scitex/str/_format_plot_text.py +180 -111
- scitex/str/_latex.py +19 -19
- scitex/str/_latex_fallback.py +9 -10
- scitex/str/_parse.py +3 -6
- scitex/str/_print_debug.py +13 -13
- scitex/str/_printc.py +2 -0
- scitex/str/_search.py +3 -3
- scitex/template/.legacy/_clone_project.py +9 -13
- scitex/template/__init__.py +10 -2
- scitex/template/_clone_project.py +7 -2
- scitex/template/_copy.py +1 -0
- scitex/template/_customize.py +3 -6
- scitex/template/_git_strategy.py +2 -3
- scitex/template/_rename.py +1 -0
- scitex/template/clone_pip_project.py +6 -7
- scitex/template/clone_research.py +7 -10
- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/__init__.py +4 -0
- scitex/tex/_export.py +890 -0
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/METADATA +14 -10
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/RECORD +1149 -985
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/io/memo.md +0 -2827
- scitex/plt/_subplots/TODO.md +0 -53
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +0 -537
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +0 -1499
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +0 -431
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/__init__.py +0 -177
- scitex/vis/editor/_defaults.py +0 -244
- scitex/vis/editor/_edit.py +0 -378
- scitex/vis/editor/flask_editor/__init__.py +0 -21
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/core.py +0 -152
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/html.py +0 -295
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- scitex/vis/editor/flask_editor/templates/styles.py +0 -549
- /scitex/{vis → fig}/README.md +0 -0
- /scitex/{vis → fig}/docs/CANVAS_ARCHITECTURE.md +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/licenses/LICENSE +0 -0
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0, n_samples - total_window + 1, self.step_size
|
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-
):
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486
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+
for start in range(0, n_samples - total_window + 1, self.step_size):
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# These positions are in the sorted (temporal) domain
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train_end = start + actual_train_size
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|
|
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@@ -522,9 +493,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
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# Test comes after validation with gap
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test_start = (
|
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525
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-
val_end + self.gap
|
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-
if val_size > 0
|
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-
else train_end + self.gap
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+
val_end + self.gap if val_size > 0 else train_end + self.gap
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)
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test_end = test_start + self.test_size
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|
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@@ -534,9 +503,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
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534
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# Extract indices from the temporally sorted sequence
|
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|
train_indices = sorted_indices[start:train_end]
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|
val_indices = (
|
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537
|
-
sorted_indices[val_start:val_end]
|
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538
|
-
if val_size > 0
|
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539
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-
else np.array([])
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+
sorted_indices[val_start:val_end] if val_size > 0 else np.array([])
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507
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)
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test_indices = sorted_indices[test_start:test_end]
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509
|
|
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@@ -552,9 +519,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
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552
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)
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# Ensure temporal order is preserved
|
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-
assert (
|
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556
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-
len(train_indices) > 0 and len(test_indices) > 0
|
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|
-
), "Empty window"
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+
assert len(train_indices) > 0 and len(test_indices) > 0, "Empty window"
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559
524
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yield train_indices, val_indices, test_indices
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@@ -589,9 +554,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
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589
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n_windows = (n_samples - total_window) // self.step_size + 1
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return max(0, n_windows)
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-
def plot_splits(
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-
self, X, y=None, timestamps=None, figsize=(12, 6), save_path=None
|
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-
):
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+
def plot_splits(self, X, y=None, timestamps=None, figsize=(12, 6), save_path=None):
|
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|
"""
|
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596
559
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Visualize the sliding window splits as rectangles.
|
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597
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|
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@@ -642,9 +605,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
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642
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original_undersample = self.undersample
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643
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self.undersample = False # Temporarily disable
|
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|
if self.val_ratio > 0:
|
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645
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-
splits_no_undersample = list(
|
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646
|
-
self.split_with_val(X, y, timestamps)
|
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647
|
-
)[:10]
|
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+
splits_no_undersample = list(self.split_with_val(X, y, timestamps))[:10]
|
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648
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|
else:
|
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649
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|
splits_no_undersample = list(self.split(X, y, timestamps))[:10]
|
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self.undersample = original_undersample # Restore
|
|
@@ -792,17 +753,14 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
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792
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|
split_indices_us = splits[fold]
|
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793
754
|
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794
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|
if len(split_indices_no_us) == 3: # train, val, test
|
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795
|
-
train_idx_no_us, val_idx_no_us, test_idx_no_us =
|
|
796
|
-
split_indices_no_us
|
|
797
|
-
)
|
|
756
|
+
train_idx_no_us, val_idx_no_us, test_idx_no_us = split_indices_no_us
|
|
798
757
|
train_idx_us, val_idx_us, test_idx_us = split_indices_us
|
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799
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|
|
|
800
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|
# Find dropped train samples
|
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801
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|
dropped_train = np.setdiff1d(train_idx_no_us, train_idx_us)
|
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802
761
|
if len(dropped_train) > 0:
|
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803
762
|
dropped_train_positions = [
|
|
804
|
-
np.where(time_order == idx)[0][0]
|
|
805
|
-
for idx in dropped_train
|
|
763
|
+
np.where(time_order == idx)[0][0] for idx in dropped_train
|
|
806
764
|
]
|
|
807
765
|
dropped_train_jitter = np.random.normal(
|
|
808
766
|
0, jitter_strength, len(dropped_train_positions)
|
|
@@ -822,8 +780,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
822
780
|
dropped_val = np.setdiff1d(val_idx_no_us, val_idx_us)
|
|
823
781
|
if len(dropped_val) > 0:
|
|
824
782
|
dropped_val_positions = [
|
|
825
|
-
np.where(time_order == idx)[0][0]
|
|
826
|
-
for idx in dropped_val
|
|
783
|
+
np.where(time_order == idx)[0][0] for idx in dropped_val
|
|
827
784
|
]
|
|
828
785
|
dropped_val_jitter = np.random.normal(
|
|
829
786
|
0, jitter_strength, len(dropped_val_positions)
|
|
@@ -847,8 +804,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
847
804
|
dropped_train = np.setdiff1d(train_idx_no_us, train_idx_us)
|
|
848
805
|
if len(dropped_train) > 0:
|
|
849
806
|
dropped_train_positions = [
|
|
850
|
-
np.where(time_order == idx)[0][0]
|
|
851
|
-
for idx in dropped_train
|
|
807
|
+
np.where(time_order == idx)[0][0] for idx in dropped_train
|
|
852
808
|
]
|
|
853
809
|
dropped_train_jitter = np.random.normal(
|
|
854
810
|
0, jitter_strength, len(dropped_train_positions)
|
|
@@ -896,7 +852,9 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
896
852
|
# Color by class if y is provided
|
|
897
853
|
if y is not None:
|
|
898
854
|
train_colors = [
|
|
899
|
-
stx.plt.color.PARAMS["RGBA_NORM"]["blue"]
|
|
855
|
+
stx.plt.color.PARAMS["RGBA_NORM"]["blue"]
|
|
856
|
+
if y[idx] == 0
|
|
857
|
+
else stx.plt.color.PARAMS["RGBA_NORM"]["lightblue"]
|
|
900
858
|
for idx in train_idx
|
|
901
859
|
]
|
|
902
860
|
ax.plot_scatter(
|
|
@@ -928,7 +886,9 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
928
886
|
# Color by class if y is provided
|
|
929
887
|
if y is not None:
|
|
930
888
|
val_colors = [
|
|
931
|
-
stx.plt.color.PARAMS["RGBA_NORM"]["yellow"]
|
|
889
|
+
stx.plt.color.PARAMS["RGBA_NORM"]["yellow"]
|
|
890
|
+
if y[idx] == 0
|
|
891
|
+
else stx.plt.color.PARAMS["RGBA_NORM"]["orange"]
|
|
932
892
|
for idx in val_idx
|
|
933
893
|
]
|
|
934
894
|
ax.plot_scatter(
|
|
@@ -960,7 +920,9 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
960
920
|
# Color by class if y is provided
|
|
961
921
|
if y is not None:
|
|
962
922
|
test_colors = [
|
|
963
|
-
stx.plt.color.PARAMS["RGBA_NORM"]["red"]
|
|
923
|
+
stx.plt.color.PARAMS["RGBA_NORM"]["red"]
|
|
924
|
+
if y[idx] == 0
|
|
925
|
+
else stx.plt.color.PARAMS["RGBA_NORM"]["brown"]
|
|
964
926
|
for idx in test_idx
|
|
965
927
|
]
|
|
966
928
|
ax.plot_scatter(
|
|
@@ -990,14 +952,10 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
990
952
|
|
|
991
953
|
# Get actual timestamps for train and test indices
|
|
992
954
|
train_times = (
|
|
993
|
-
timestamps[train_idx]
|
|
994
|
-
if timestamps is not None
|
|
995
|
-
else train_idx
|
|
955
|
+
timestamps[train_idx] if timestamps is not None else train_idx
|
|
996
956
|
)
|
|
997
957
|
test_times = (
|
|
998
|
-
timestamps[test_idx]
|
|
999
|
-
if timestamps is not None
|
|
1000
|
-
else test_idx
|
|
958
|
+
timestamps[test_idx] if timestamps is not None else test_idx
|
|
1001
959
|
)
|
|
1002
960
|
|
|
1003
961
|
# Find temporal positions for scatter plot
|
|
@@ -1019,7 +977,9 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
1019
977
|
# Color by class if y is provided
|
|
1020
978
|
if y is not None:
|
|
1021
979
|
train_colors = [
|
|
1022
|
-
stx.plt.color.PARAMS["RGBA_NORM"]["blue"]
|
|
980
|
+
stx.plt.color.PARAMS["RGBA_NORM"]["blue"]
|
|
981
|
+
if y[idx] == 0
|
|
982
|
+
else stx.plt.color.PARAMS["RGBA_NORM"]["lightblue"]
|
|
1023
983
|
for idx in train_idx
|
|
1024
984
|
]
|
|
1025
985
|
ax.plot_scatter(
|
|
@@ -1051,7 +1011,9 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
1051
1011
|
# Color by class if y is provided
|
|
1052
1012
|
if y is not None:
|
|
1053
1013
|
test_colors = [
|
|
1054
|
-
stx.plt.color.PARAMS["RGBA_NORM"]["red"]
|
|
1014
|
+
stx.plt.color.PARAMS["RGBA_NORM"]["red"]
|
|
1015
|
+
if y[idx] == 0
|
|
1016
|
+
else stx.plt.color.PARAMS["RGBA_NORM"]["brown"]
|
|
1055
1017
|
for idx in test_idx
|
|
1056
1018
|
]
|
|
1057
1019
|
ax.plot_scatter(
|
|
@@ -1082,9 +1044,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
1082
1044
|
ax.set_xlabel("Temporal Position (sorted by timestamp)")
|
|
1083
1045
|
ax.set_ylabel("Fold")
|
|
1084
1046
|
gap_text = f", Gap: {self.gap}" if self.gap > 0 else ""
|
|
1085
|
-
val_text =
|
|
1086
|
-
f", Val ratio: {self.val_ratio:.1%}" if self.val_ratio > 0 else ""
|
|
1087
|
-
)
|
|
1047
|
+
val_text = f", Val ratio: {self.val_ratio:.1%}" if self.val_ratio > 0 else ""
|
|
1088
1048
|
ax.set_title(
|
|
1089
1049
|
f"Sliding Window Split Visualization ({split_type})\\n"
|
|
1090
1050
|
f"Window: {self.window_size}, Step: {self.step_size}, Test: {self.test_size}{gap_text}{val_text}\\n"
|
|
@@ -1113,9 +1073,7 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
1113
1073
|
fold_info = f"Fold 0: Train n={len(train_idx)}, Val n={len(val_idx)}, Test n={len(test_idx)}"
|
|
1114
1074
|
else: # train, test
|
|
1115
1075
|
train_idx, test_idx = first_split
|
|
1116
|
-
fold_info = (
|
|
1117
|
-
f"Fold 0: Train n={len(train_idx)}, Test n={len(test_idx)}"
|
|
1118
|
-
)
|
|
1076
|
+
fold_info = f"Fold 0: Train n={len(train_idx)}, Test n={len(test_idx)}"
|
|
1119
1077
|
|
|
1120
1078
|
# Add legend with class information
|
|
1121
1079
|
handles, labels = ax.get_legend_handles_labels()
|
|
@@ -1134,6 +1092,8 @@ class TimeSeriesSlidingWindowSplit(BaseCrossValidator):
|
|
|
1134
1092
|
|
|
1135
1093
|
|
|
1136
1094
|
"""Functions & Classes"""
|
|
1095
|
+
|
|
1096
|
+
|
|
1137
1097
|
def main(args) -> int:
|
|
1138
1098
|
"""Demonstrate TimeSeriesSlidingWindowSplit functionality.
|
|
1139
1099
|
|
|
@@ -1172,9 +1132,7 @@ def main(args) -> int:
|
|
|
1172
1132
|
)
|
|
1173
1133
|
|
|
1174
1134
|
fig = splitter.plot_splits(X, y, timestamps)
|
|
1175
|
-
stx.io.save(
|
|
1176
|
-
fig, "./01_sliding_window_fixed.jpg", symlink_from_cwd=True
|
|
1177
|
-
)
|
|
1135
|
+
stx.io.save(fig, "./01_sliding_window_fixed.jpg", symlink_from_cwd=True)
|
|
1178
1136
|
logger.info("")
|
|
1179
1137
|
|
|
1180
1138
|
return splits
|
|
@@ -1209,9 +1167,7 @@ def main(args) -> int:
|
|
|
1209
1167
|
)
|
|
1210
1168
|
|
|
1211
1169
|
fig = splitter.plot_splits(X, y, timestamps)
|
|
1212
|
-
stx.io.save(
|
|
1213
|
-
fig, "./02_sliding_window_expanding.jpg", symlink_from_cwd=True
|
|
1214
|
-
)
|
|
1170
|
+
stx.io.save(fig, "./02_sliding_window_expanding.jpg", symlink_from_cwd=True)
|
|
1215
1171
|
logger.info("")
|
|
1216
1172
|
|
|
1217
1173
|
return splits
|
|
@@ -1225,9 +1181,7 @@ def main(args) -> int:
|
|
|
1225
1181
|
logger.info("=" * 70)
|
|
1226
1182
|
logger.info("DEMO 3: Fixed Window + Overlapping Tests")
|
|
1227
1183
|
logger.info("=" * 70)
|
|
1228
|
-
logger.info(
|
|
1229
|
-
"Best for: Maximum evaluation points (like K-fold for training)"
|
|
1230
|
-
)
|
|
1184
|
+
logger.info("Best for: Maximum evaluation points (like K-fold for training)")
|
|
1231
1185
|
|
|
1232
1186
|
splitter = TimeSeriesSlidingWindowSplit(
|
|
1233
1187
|
window_size=args.window_size,
|
|
@@ -1242,14 +1196,10 @@ def main(args) -> int:
|
|
|
1242
1196
|
logger.info(f"Generated {len(splits)} splits")
|
|
1243
1197
|
|
|
1244
1198
|
for fold, (train_idx, test_idx) in enumerate(splits):
|
|
1245
|
-
logger.info(
|
|
1246
|
-
f" Fold {fold}: Train={len(train_idx)}, Test={len(test_idx)}"
|
|
1247
|
-
)
|
|
1199
|
+
logger.info(f" Fold {fold}: Train={len(train_idx)}, Test={len(test_idx)}")
|
|
1248
1200
|
|
|
1249
1201
|
fig = splitter.plot_splits(X, y, timestamps)
|
|
1250
|
-
stx.io.save(
|
|
1251
|
-
fig, "./03_sliding_window_overlapping.jpg", symlink_from_cwd=True
|
|
1252
|
-
)
|
|
1202
|
+
stx.io.save(fig, "./03_sliding_window_overlapping.jpg", symlink_from_cwd=True)
|
|
1253
1203
|
logger.info("")
|
|
1254
1204
|
|
|
1255
1205
|
return splits
|
|
@@ -1278,15 +1228,13 @@ def main(args) -> int:
|
|
|
1278
1228
|
undersample=False,
|
|
1279
1229
|
)
|
|
1280
1230
|
|
|
1281
|
-
splits_no_us = list(
|
|
1282
|
-
|
|
1283
|
-
|
|
1231
|
+
splits_no_us = list(splitter_no_undersample.split(X, y_imbalanced, timestamps))[
|
|
1232
|
+
:3
|
|
1233
|
+
]
|
|
1284
1234
|
logger.info(f"WITHOUT undersampling: {len(splits_no_us)} splits")
|
|
1285
1235
|
for fold, (train_idx, test_idx) in enumerate(splits_no_us):
|
|
1286
1236
|
train_labels = y_imbalanced[train_idx]
|
|
1287
|
-
train_unique, train_counts = np.unique(
|
|
1288
|
-
train_labels, return_counts=True
|
|
1289
|
-
)
|
|
1237
|
+
train_unique, train_counts = np.unique(train_labels, return_counts=True)
|
|
1290
1238
|
logger.info(
|
|
1291
1239
|
f" Fold {fold}: Train size={len(train_idx)}, "
|
|
1292
1240
|
f"Class dist={dict(zip(train_unique, train_counts))}"
|
|
@@ -1302,15 +1250,11 @@ def main(args) -> int:
|
|
|
1302
1250
|
random_state=42,
|
|
1303
1251
|
)
|
|
1304
1252
|
|
|
1305
|
-
splits_us = list(
|
|
1306
|
-
splitter_undersample.split(X, y_imbalanced, timestamps)
|
|
1307
|
-
)[:3]
|
|
1253
|
+
splits_us = list(splitter_undersample.split(X, y_imbalanced, timestamps))[:3]
|
|
1308
1254
|
logger.info(f"WITH undersampling: {len(splits_us)} splits")
|
|
1309
1255
|
for fold, (train_idx, test_idx) in enumerate(splits_us):
|
|
1310
1256
|
train_labels = y_imbalanced[train_idx]
|
|
1311
|
-
train_unique, train_counts = np.unique(
|
|
1312
|
-
train_labels, return_counts=True
|
|
1313
|
-
)
|
|
1257
|
+
train_unique, train_counts = np.unique(train_labels, return_counts=True)
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logger.info(
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f" Fold {fold}: Train size={len(train_idx)} (balanced!), "
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f"Class dist={dict(zip(train_unique, train_counts))}"
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@@ -1318,9 +1262,7 @@ def main(args) -> int:
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# Save visualization for undersampling
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fig = splitter_undersample.plot_splits(X, y_imbalanced, timestamps)
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stx.io.save(
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fig, "./04_sliding_window_undersample.jpg", symlink_from_cwd=True
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stx.io.save(fig, "./04_sliding_window_undersample.jpg", symlink_from_cwd=True)
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logger.info("")
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return splits_us
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@@ -1354,9 +1296,7 @@ def main(args) -> int:
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)
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fig = splitter.plot_splits(X, y, timestamps)
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stx.io.save(
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fig, "./05_sliding_window_validation.jpg", symlink_from_cwd=True
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)
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stx.io.save(fig, "./05_sliding_window_validation.jpg", symlink_from_cwd=True)
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logger.info("")
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return splits
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@@ -1425,9 +1365,7 @@ def main(args) -> int:
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for fold, (train_idx, val_idx, test_idx) in enumerate(splits):
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train_labels = y_imbalanced[train_idx]
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-
train_unique, train_counts = np.unique(
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train_labels, return_counts=True
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)
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train_unique, train_counts = np.unique(train_labels, return_counts=True)
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logger.info(
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f" Fold {fold}: Train={len(train_idx)} (balanced!), Val={len(val_idx)}, Test={len(test_idx)}, "
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f"Class dist={dict(zip(train_unique, train_counts))}"
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@@ -1450,9 +1388,7 @@ def main(args) -> int:
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Shows all features working together.
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"""
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logger.info("=" * 70)
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-
logger.info(
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-
"DEMO 8: Expanding + Undersampling + Validation (ALL OPTIONS)"
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)
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+
logger.info("DEMO 8: Expanding + Undersampling + Validation (ALL OPTIONS)")
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logger.info("=" * 70)
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logger.info("Best for: Comprehensive time series CV with all features")
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@@ -1472,18 +1408,14 @@ def main(args) -> int:
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for fold, (train_idx, val_idx, test_idx) in enumerate(splits):
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train_labels = y_imbalanced[train_idx]
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-
train_unique, train_counts = np.unique(
|
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-
train_labels, return_counts=True
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-
)
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+
train_unique, train_counts = np.unique(train_labels, return_counts=True)
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logger.info(
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f" Fold {fold}: Train={len(train_idx)} (growing & balanced!), Val={len(val_idx)}, Test={len(test_idx)}, "
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f"Class dist={dict(zip(train_unique, train_counts))}"
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)
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fig = splitter.plot_splits(X, y_imbalanced, timestamps)
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stx.io.save(
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fig, "./08_sliding_window_all_options.jpg", symlink_from_cwd=True
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)
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+
stx.io.save(fig, "./08_sliding_window_all_options.jpg", symlink_from_cwd=True)
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logger.info("")
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return splits
|
|
@@ -1571,21 +1503,15 @@ def main(args) -> int:
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# Create imbalanced labels (80% class 0, 20% class 1)
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y_imbalanced = np.zeros(n_samples, dtype=int)
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n_minority = int(n_samples * 0.2)
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|
-
minority_indices = np.random.choice(
|
|
1575
|
-
n_samples, size=n_minority, replace=False
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|
-
)
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1506
|
+
minority_indices = np.random.choice(n_samples, size=n_minority, replace=False)
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|
y_imbalanced[minority_indices] = 1
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1508
|
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|
-
logger.info(
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1580
|
-
f"Generated test data: {n_samples} samples, {X.shape[1]} features"
|
|
1581
|
-
)
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1509
|
+
logger.info(f"Generated test data: {n_samples} samples, {X.shape[1]} features")
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|
logger.info("")
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|
1583
1511
|
|
|
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|
# Run demos
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|
splits_fixed = demo_01_fixed_window_non_overlapping_tests(X, y, timestamps)
|
|
1586
|
-
splits_expanding = demo_02_expanding_window_non_overlapping_tests(
|
|
1587
|
-
X, y, timestamps
|
|
1588
|
-
)
|
|
1514
|
+
splits_expanding = demo_02_expanding_window_non_overlapping_tests(X, y, timestamps)
|
|
1589
1515
|
splits_overlap = demo_03_fixed_window_overlapping_tests(X, y, timestamps)
|
|
1590
1516
|
splits_undersample = demo_04_undersample_imbalanced_data(
|
|
1591
1517
|
X, y_imbalanced, timestamps
|
|
@@ -1595,9 +1521,7 @@ def main(args) -> int:
|
|
|
1595
1521
|
splits_undersample_val = demo_07_undersample_with_validation(
|
|
1596
1522
|
X, y_imbalanced, timestamps
|
|
1597
1523
|
)
|
|
1598
|
-
splits_all_options = demo_08_all_options_combined(
|
|
1599
|
-
X, y_imbalanced, timestamps
|
|
1600
|
-
)
|
|
1524
|
+
splits_all_options = demo_08_all_options_combined(X, y_imbalanced, timestamps)
|
|
1601
1525
|
|
|
1602
1526
|
# Print summary
|
|
1603
1527
|
print_summary(
|
|
@@ -15,7 +15,7 @@ from enum import Enum
|
|
|
15
15
|
class TimeSeriesStrategy(Enum):
|
|
16
16
|
"""
|
|
17
17
|
Available time series CV strategies.
|
|
18
|
-
|
|
18
|
+
|
|
19
19
|
Attributes
|
|
20
20
|
----------
|
|
21
21
|
STRATIFIED : str
|
|
@@ -29,28 +29,28 @@ class TimeSeriesStrategy(Enum):
|
|
|
29
29
|
FIXED : str
|
|
30
30
|
Fixed train/test split at specific time point
|
|
31
31
|
"""
|
|
32
|
-
|
|
32
|
+
|
|
33
33
|
STRATIFIED = "stratified" # Single time series with class balance
|
|
34
34
|
BLOCKING = "blocking" # Multiple time series (e.g., patients)
|
|
35
35
|
SLIDING = "sliding" # Sliding window approach
|
|
36
36
|
EXPANDING = "expanding" # Expanding window (train grows)
|
|
37
37
|
FIXED = "fixed" # Fixed train/test split
|
|
38
|
-
|
|
38
|
+
|
|
39
39
|
@classmethod
|
|
40
|
-
def from_string(cls, value: str) ->
|
|
40
|
+
def from_string(cls, value: str) -> "TimeSeriesStrategy":
|
|
41
41
|
"""
|
|
42
42
|
Create strategy from string value.
|
|
43
|
-
|
|
43
|
+
|
|
44
44
|
Parameters
|
|
45
45
|
----------
|
|
46
46
|
value : str
|
|
47
47
|
String representation of strategy
|
|
48
|
-
|
|
48
|
+
|
|
49
49
|
Returns
|
|
50
50
|
-------
|
|
51
51
|
TimeSeriesStrategy
|
|
52
52
|
Corresponding enum value
|
|
53
|
-
|
|
53
|
+
|
|
54
54
|
Raises
|
|
55
55
|
------
|
|
56
56
|
ValueError
|
|
@@ -61,14 +61,13 @@ class TimeSeriesStrategy(Enum):
|
|
|
61
61
|
if strategy.value == value_lower:
|
|
62
62
|
return strategy
|
|
63
63
|
raise ValueError(
|
|
64
|
-
f"Unknown strategy: {value}. "
|
|
65
|
-
f"Valid options are: {[s.value for s in cls]}"
|
|
64
|
+
f"Unknown strategy: {value}. Valid options are: {[s.value for s in cls]}"
|
|
66
65
|
)
|
|
67
|
-
|
|
66
|
+
|
|
68
67
|
def get_description(self) -> str:
|
|
69
68
|
"""
|
|
70
69
|
Get human-readable description of the strategy.
|
|
71
|
-
|
|
70
|
+
|
|
72
71
|
Returns
|
|
73
72
|
-------
|
|
74
73
|
str
|
|
@@ -79,6 +78,6 @@ class TimeSeriesStrategy(Enum):
|
|
|
79
78
|
self.BLOCKING: "Handles multiple independent time series",
|
|
80
79
|
self.SLIDING: "Uses fixed-size sliding windows through time",
|
|
81
80
|
self.EXPANDING: "Training set expands while test moves forward",
|
|
82
|
-
self.FIXED: "Single fixed split at specific time point"
|
|
81
|
+
self.FIXED: "Single fixed split at specific time point",
|
|
83
82
|
}
|
|
84
|
-
return descriptions.get(self, "Unknown strategy")
|
|
83
|
+
return descriptions.get(self, "Unknown strategy")
|