scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1179) hide show
  1. scitex/__init__.py +25 -10
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/audio/README.md +52 -0
  66. scitex/audio/__init__.py +384 -0
  67. scitex/audio/__main__.py +129 -0
  68. scitex/audio/_tts.py +334 -0
  69. scitex/audio/engines/__init__.py +44 -0
  70. scitex/audio/engines/base.py +275 -0
  71. scitex/audio/engines/elevenlabs_engine.py +143 -0
  72. scitex/audio/engines/gtts_engine.py +162 -0
  73. scitex/audio/engines/pyttsx3_engine.py +131 -0
  74. scitex/audio/mcp_server.py +757 -0
  75. scitex/benchmark/__init__.py +15 -25
  76. scitex/benchmark/benchmark.py +124 -117
  77. scitex/benchmark/monitor.py +117 -107
  78. scitex/benchmark/profiler.py +61 -58
  79. scitex/bridge/__init__.py +110 -0
  80. scitex/bridge/_helpers.py +149 -0
  81. scitex/bridge/_plt_vis.py +529 -0
  82. scitex/bridge/_protocol.py +283 -0
  83. scitex/bridge/_stats_plt.py +261 -0
  84. scitex/bridge/_stats_vis.py +265 -0
  85. scitex/browser/__init__.py +0 -2
  86. scitex/browser/auth/__init__.py +0 -0
  87. scitex/browser/auth/google.py +16 -11
  88. scitex/browser/automation/CookieHandler.py +2 -3
  89. scitex/browser/collaboration/__init__.py +3 -0
  90. scitex/browser/collaboration/auth_helpers.py +3 -1
  91. scitex/browser/collaboration/collaborative_agent.py +2 -0
  92. scitex/browser/collaboration/interactive_panel.py +2 -2
  93. scitex/browser/collaboration/shared_session.py +20 -11
  94. scitex/browser/collaboration/standard_interactions.py +1 -0
  95. scitex/browser/core/BrowserMixin.py +12 -30
  96. scitex/browser/core/ChromeProfileManager.py +9 -24
  97. scitex/browser/debugging/_browser_logger.py +15 -25
  98. scitex/browser/debugging/_failure_capture.py +9 -2
  99. scitex/browser/debugging/_highlight_element.py +15 -6
  100. scitex/browser/debugging/_show_grid.py +5 -6
  101. scitex/browser/debugging/_sync_session.py +4 -3
  102. scitex/browser/debugging/_test_monitor.py +14 -5
  103. scitex/browser/debugging/_visual_cursor.py +46 -35
  104. scitex/browser/interaction/click_center.py +4 -3
  105. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  106. scitex/browser/interaction/close_popups.py +79 -66
  107. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  108. scitex/browser/pdf/__init__.py +3 -1
  109. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  110. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  111. scitex/browser/remote/CaptchaHandler.py +109 -96
  112. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  113. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  114. scitex/browser/stealth/HumanBehavior.py +4 -9
  115. scitex/browser/stealth/StealthManager.py +11 -26
  116. scitex/capture/__init__.py +17 -17
  117. scitex/capture/__main__.py +2 -3
  118. scitex/capture/capture.py +23 -51
  119. scitex/capture/cli.py +14 -39
  120. scitex/capture/gif.py +5 -9
  121. scitex/capture/mcp_server.py +7 -20
  122. scitex/capture/session.py +4 -3
  123. scitex/capture/utils.py +18 -53
  124. scitex/cli/__init__.py +1 -1
  125. scitex/cli/cloud.py +158 -116
  126. scitex/cli/config.py +224 -0
  127. scitex/cli/main.py +41 -40
  128. scitex/cli/scholar.py +60 -27
  129. scitex/cli/security.py +14 -20
  130. scitex/cli/web.py +87 -90
  131. scitex/cli/writer.py +51 -45
  132. scitex/cloud/__init__.py +14 -11
  133. scitex/cloud/_matplotlib_hook.py +6 -6
  134. scitex/config/README.md +313 -0
  135. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  136. scitex/config/_ScitexConfig.py +319 -0
  137. scitex/config/__init__.py +41 -9
  138. scitex/config/_paths.py +325 -0
  139. scitex/config/default.yaml +81 -0
  140. scitex/context/_suppress_output.py +2 -3
  141. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  142. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  143. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  144. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  145. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  146. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  147. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  148. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  149. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  150. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  151. scitex/db/_BaseMixins/__init__.py +1 -1
  152. scitex/db/__init__.py +9 -1
  153. scitex/db/__main__.py +8 -21
  154. scitex/db/_check_health.py +15 -31
  155. scitex/db/_delete_duplicates.py +7 -4
  156. scitex/db/_inspect.py +22 -38
  157. scitex/db/_inspect_optimized.py +89 -85
  158. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  159. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  160. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  161. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  162. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  163. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  164. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  165. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  166. scitex/db/_postgresql/__init__.py +1 -1
  167. scitex/db/_sqlite3/_SQLite3.py +2 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  169. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  170. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  171. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  172. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  173. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  174. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  175. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  176. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  177. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  178. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  179. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  180. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  181. scitex/db/_sqlite3/__init__.py +1 -1
  182. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  183. scitex/decorators/__init__.py +29 -4
  184. scitex/decorators/_auto_order.py +43 -43
  185. scitex/decorators/_batch_fn.py +12 -6
  186. scitex/decorators/_cache_disk.py +8 -9
  187. scitex/decorators/_cache_disk_async.py +8 -7
  188. scitex/decorators/_combined.py +19 -13
  189. scitex/decorators/_converters.py +16 -3
  190. scitex/decorators/_deprecated.py +32 -22
  191. scitex/decorators/_numpy_fn.py +18 -4
  192. scitex/decorators/_pandas_fn.py +17 -5
  193. scitex/decorators/_signal_fn.py +17 -3
  194. scitex/decorators/_torch_fn.py +32 -15
  195. scitex/decorators/_xarray_fn.py +23 -9
  196. scitex/dev/_analyze_code_flow.py +0 -2
  197. scitex/dev/plt/__init__.py +272 -0
  198. scitex/dev/plt/plot_mpl_axhline.py +28 -0
  199. scitex/dev/plt/plot_mpl_axhspan.py +28 -0
  200. scitex/dev/plt/plot_mpl_axvline.py +28 -0
  201. scitex/dev/plt/plot_mpl_axvspan.py +28 -0
  202. scitex/dev/plt/plot_mpl_bar.py +29 -0
  203. scitex/dev/plt/plot_mpl_barh.py +29 -0
  204. scitex/dev/plt/plot_mpl_boxplot.py +28 -0
  205. scitex/dev/plt/plot_mpl_contour.py +31 -0
  206. scitex/dev/plt/plot_mpl_contourf.py +31 -0
  207. scitex/dev/plt/plot_mpl_errorbar.py +30 -0
  208. scitex/dev/plt/plot_mpl_eventplot.py +28 -0
  209. scitex/dev/plt/plot_mpl_fill.py +30 -0
  210. scitex/dev/plt/plot_mpl_fill_between.py +31 -0
  211. scitex/dev/plt/plot_mpl_hexbin.py +28 -0
  212. scitex/dev/plt/plot_mpl_hist.py +28 -0
  213. scitex/dev/plt/plot_mpl_hist2d.py +28 -0
  214. scitex/dev/plt/plot_mpl_imshow.py +29 -0
  215. scitex/dev/plt/plot_mpl_pcolormesh.py +31 -0
  216. scitex/dev/plt/plot_mpl_pie.py +29 -0
  217. scitex/dev/plt/plot_mpl_plot.py +29 -0
  218. scitex/dev/plt/plot_mpl_quiver.py +31 -0
  219. scitex/dev/plt/plot_mpl_scatter.py +28 -0
  220. scitex/dev/plt/plot_mpl_stackplot.py +31 -0
  221. scitex/dev/plt/plot_mpl_stem.py +29 -0
  222. scitex/dev/plt/plot_mpl_step.py +29 -0
  223. scitex/dev/plt/plot_mpl_violinplot.py +28 -0
  224. scitex/dev/plt/plot_sns_barplot.py +29 -0
  225. scitex/dev/plt/plot_sns_boxplot.py +29 -0
  226. scitex/dev/plt/plot_sns_heatmap.py +28 -0
  227. scitex/dev/plt/plot_sns_histplot.py +29 -0
  228. scitex/dev/plt/plot_sns_kdeplot.py +29 -0
  229. scitex/dev/plt/plot_sns_lineplot.py +31 -0
  230. scitex/dev/plt/plot_sns_scatterplot.py +29 -0
  231. scitex/dev/plt/plot_sns_stripplot.py +29 -0
  232. scitex/dev/plt/plot_sns_swarmplot.py +29 -0
  233. scitex/dev/plt/plot_sns_violinplot.py +29 -0
  234. scitex/dev/plt/plot_stx_bar.py +29 -0
  235. scitex/dev/plt/plot_stx_barh.py +29 -0
  236. scitex/dev/plt/plot_stx_box.py +28 -0
  237. scitex/dev/plt/plot_stx_boxplot.py +28 -0
  238. scitex/dev/plt/plot_stx_conf_mat.py +28 -0
  239. scitex/dev/plt/plot_stx_contour.py +31 -0
  240. scitex/dev/plt/plot_stx_ecdf.py +28 -0
  241. scitex/dev/plt/plot_stx_errorbar.py +30 -0
  242. scitex/dev/plt/plot_stx_fill_between.py +31 -0
  243. scitex/dev/plt/plot_stx_fillv.py +28 -0
  244. scitex/dev/plt/plot_stx_heatmap.py +28 -0
  245. scitex/dev/plt/plot_stx_image.py +28 -0
  246. scitex/dev/plt/plot_stx_imshow.py +28 -0
  247. scitex/dev/plt/plot_stx_joyplot.py +28 -0
  248. scitex/dev/plt/plot_stx_kde.py +28 -0
  249. scitex/dev/plt/plot_stx_line.py +28 -0
  250. scitex/dev/plt/plot_stx_mean_ci.py +28 -0
  251. scitex/dev/plt/plot_stx_mean_std.py +28 -0
  252. scitex/dev/plt/plot_stx_median_iqr.py +28 -0
  253. scitex/dev/plt/plot_stx_raster.py +28 -0
  254. scitex/dev/plt/plot_stx_rectangle.py +28 -0
  255. scitex/dev/plt/plot_stx_scatter.py +29 -0
  256. scitex/dev/plt/plot_stx_shaded_line.py +29 -0
  257. scitex/dev/plt/plot_stx_violin.py +28 -0
  258. scitex/dev/plt/plot_stx_violinplot.py +28 -0
  259. scitex/dict/_DotDict.py +15 -19
  260. scitex/dict/_flatten.py +1 -0
  261. scitex/dict/_listed_dict.py +1 -0
  262. scitex/dict/_pop_keys.py +1 -0
  263. scitex/dict/_replace.py +1 -0
  264. scitex/dict/_safe_merge.py +1 -0
  265. scitex/dict/_to_str.py +2 -3
  266. scitex/dsp/__init__.py +13 -4
  267. scitex/dsp/_crop.py +3 -1
  268. scitex/dsp/_detect_ripples.py +3 -1
  269. scitex/dsp/_modulation_index.py +3 -1
  270. scitex/dsp/_time.py +3 -1
  271. scitex/dsp/_wavelet.py +0 -1
  272. scitex/dsp/example.py +0 -5
  273. scitex/dsp/filt.py +4 -0
  274. scitex/dsp/utils/__init__.py +4 -1
  275. scitex/dsp/utils/pac.py +3 -3
  276. scitex/dt/_normalize_timestamp.py +4 -1
  277. scitex/errors.py +3 -6
  278. scitex/etc/__init__.py +1 -1
  279. scitex/fig/__init__.py +352 -0
  280. scitex/{vis → fig}/backend/__init__.py +3 -3
  281. scitex/{vis/backend/export.py → fig/backend/_export.py} +1 -1
  282. scitex/{vis/backend/parser.py → fig/backend/_parser.py} +2 -4
  283. scitex/{vis/backend/render.py → fig/backend/_render.py} +1 -1
  284. scitex/{vis → fig}/canvas.py +16 -4
  285. scitex/{vis → fig}/editor/__init__.py +0 -0
  286. scitex/{vis → fig}/editor/_dearpygui_editor.py +450 -304
  287. scitex/fig/editor/_defaults.py +300 -0
  288. scitex/fig/editor/_edit.py +751 -0
  289. scitex/{vis → fig}/editor/_flask_editor.py +8 -8
  290. scitex/{vis → fig}/editor/_mpl_editor.py +63 -48
  291. scitex/{vis → fig}/editor/_qt_editor.py +391 -160
  292. scitex/{vis → fig}/editor/_tkinter_editor.py +146 -89
  293. scitex/fig/editor/flask_editor/__init__.py +21 -0
  294. scitex/fig/editor/flask_editor/_bbox.py +1276 -0
  295. scitex/fig/editor/flask_editor/_core.py +624 -0
  296. scitex/fig/editor/flask_editor/_plotter.py +601 -0
  297. scitex/fig/editor/flask_editor/_renderer.py +739 -0
  298. scitex/{vis/editor/flask_editor/utils.py → fig/editor/flask_editor/_utils.py} +13 -14
  299. scitex/{vis → fig}/editor/flask_editor/templates/__init__.py +6 -6
  300. scitex/fig/editor/flask_editor/templates/_html.py +834 -0
  301. scitex/fig/editor/flask_editor/templates/_scripts.py +3136 -0
  302. scitex/fig/editor/flask_editor/templates/_styles.py +1346 -0
  303. scitex/{vis → fig}/io/__init__.py +18 -6
  304. scitex/fig/io/_bundle.py +973 -0
  305. scitex/{vis/io/canvas.py → fig/io/_canvas.py} +9 -5
  306. scitex/{vis/io/data.py → fig/io/_data.py} +14 -10
  307. scitex/{vis/io/directory.py → fig/io/_directory.py} +7 -4
  308. scitex/{vis/io/export.py → fig/io/_export.py} +16 -13
  309. scitex/{vis/io/load.py → fig/io/_load.py} +2 -2
  310. scitex/{vis/io/panel.py → fig/io/_panel.py} +22 -14
  311. scitex/{vis/io/save.py → fig/io/_save.py} +1 -1
  312. scitex/{vis → fig}/model/__init__.py +8 -8
  313. scitex/{vis/model/annotations.py → fig/model/_annotations.py} +3 -5
  314. scitex/{vis/model/axes.py → fig/model/_axes.py} +2 -2
  315. scitex/{vis/model/figure.py → fig/model/_figure.py} +1 -1
  316. scitex/{vis/model/guides.py → fig/model/_guides.py} +2 -2
  317. scitex/{vis/model/plot.py → fig/model/_plot.py} +3 -5
  318. scitex/{vis/model/plot_types.py → fig/model/_plot_types.py} +0 -0
  319. scitex/{vis/model/styles.py → fig/model/_styles.py} +1 -1
  320. scitex/{vis → fig}/utils/__init__.py +3 -3
  321. scitex/{vis/utils/defaults.py → fig/utils/_defaults.py} +1 -2
  322. scitex/{vis/utils/validate.py → fig/utils/_validate.py} +3 -9
  323. scitex/gen/_DimHandler.py +6 -6
  324. scitex/gen/__init__.py +5 -1
  325. scitex/gen/_deprecated_close.py +1 -0
  326. scitex/gen/_deprecated_start.py +5 -3
  327. scitex/gen/_detect_environment.py +44 -41
  328. scitex/gen/_detect_notebook_path.py +51 -47
  329. scitex/gen/_embed.py +1 -1
  330. scitex/gen/_get_notebook_path.py +81 -62
  331. scitex/gen/_inspect_module.py +0 -1
  332. scitex/gen/_norm.py +16 -7
  333. scitex/gen/_norm_cache.py +78 -65
  334. scitex/gen/_print_config.py +0 -3
  335. scitex/gen/_src.py +2 -3
  336. scitex/gen/_title_case.py +3 -2
  337. scitex/gen/_to_even.py +8 -8
  338. scitex/gen/_transpose.py +3 -3
  339. scitex/gen/misc.py +0 -3
  340. scitex/gists/_SigMacro_processFigure_S.py +2 -2
  341. scitex/gists/_SigMacro_toBlue.py +2 -2
  342. scitex/gists/__init__.py +4 -1
  343. scitex/git/_branch.py +19 -11
  344. scitex/git/_clone.py +23 -15
  345. scitex/git/_commit.py +10 -12
  346. scitex/git/_init.py +15 -38
  347. scitex/git/_remote.py +9 -3
  348. scitex/git/_result.py +3 -0
  349. scitex/git/_retry.py +2 -5
  350. scitex/git/_types.py +4 -0
  351. scitex/git/_validation.py +8 -8
  352. scitex/git/_workflow.py +4 -4
  353. scitex/io/__init__.py +12 -27
  354. scitex/io/_bundle.py +434 -0
  355. scitex/io/_flush.py +5 -2
  356. scitex/io/_glob.py +2 -2
  357. scitex/io/_json2md.py +3 -3
  358. scitex/io/_load.py +104 -8
  359. scitex/io/_load_cache.py +71 -71
  360. scitex/io/_load_configs.py +2 -3
  361. scitex/io/_load_modules/_H5Explorer.py +11 -14
  362. scitex/io/_load_modules/_ZarrExplorer.py +3 -3
  363. scitex/io/_load_modules/_bibtex.py +62 -63
  364. scitex/io/_load_modules/_canvas.py +6 -11
  365. scitex/io/_load_modules/_catboost.py +7 -2
  366. scitex/io/_load_modules/_hdf5.py +2 -0
  367. scitex/io/_load_modules/_image.py +7 -4
  368. scitex/io/_load_modules/_matlab.py +3 -1
  369. scitex/io/_load_modules/_optuna.py +0 -1
  370. scitex/io/_load_modules/_pdf.py +38 -29
  371. scitex/io/_load_modules/_sqlite3.py +1 -0
  372. scitex/io/_load_modules/_txt.py +6 -2
  373. scitex/io/_load_modules/_xml.py +9 -9
  374. scitex/io/_load_modules/_zarr.py +12 -10
  375. scitex/io/_metadata.py +34 -285
  376. scitex/io/_metadata_modules/__init__.py +46 -0
  377. scitex/io/_metadata_modules/_embed.py +70 -0
  378. scitex/io/_metadata_modules/_read.py +64 -0
  379. scitex/io/_metadata_modules/_utils.py +79 -0
  380. scitex/io/_metadata_modules/embed_metadata_jpeg.py +74 -0
  381. scitex/io/_metadata_modules/embed_metadata_pdf.py +53 -0
  382. scitex/io/_metadata_modules/embed_metadata_png.py +26 -0
  383. scitex/io/_metadata_modules/embed_metadata_svg.py +62 -0
  384. scitex/io/_metadata_modules/read_metadata_jpeg.py +57 -0
  385. scitex/io/_metadata_modules/read_metadata_pdf.py +51 -0
  386. scitex/io/_metadata_modules/read_metadata_png.py +39 -0
  387. scitex/io/_metadata_modules/read_metadata_svg.py +44 -0
  388. scitex/io/_qr_utils.py +21 -14
  389. scitex/io/_save.py +755 -80
  390. scitex/io/_save_modules/__init__.py +7 -2
  391. scitex/io/_save_modules/_bibtex.py +66 -61
  392. scitex/io/_save_modules/_canvas.py +8 -9
  393. scitex/io/_save_modules/_catboost.py +2 -2
  394. scitex/io/_save_modules/_csv.py +4 -4
  395. scitex/io/_save_modules/_excel.py +5 -9
  396. scitex/io/_save_modules/_hdf5.py +9 -21
  397. scitex/io/_save_modules/_html.py +5 -5
  398. scitex/io/_save_modules/_image.py +107 -14
  399. scitex/io/_save_modules/_joblib.py +2 -2
  400. scitex/io/_save_modules/_json.py +51 -6
  401. scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
  402. scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
  403. scitex/io/_save_modules/_matlab.py +2 -2
  404. scitex/io/_save_modules/_numpy.py +6 -8
  405. scitex/io/_save_modules/_pickle.py +4 -4
  406. scitex/io/_save_modules/_plotly.py +3 -3
  407. scitex/io/_save_modules/_tex.py +30 -29
  408. scitex/io/_save_modules/_text.py +2 -2
  409. scitex/io/_save_modules/_yaml.py +9 -9
  410. scitex/io/_save_modules/_zarr.py +15 -15
  411. scitex/io/utils/__init__.py +2 -1
  412. scitex/io/utils/h5_to_zarr.py +183 -163
  413. scitex/linalg/__init__.py +1 -1
  414. scitex/linalg/_geometric_median.py +4 -3
  415. scitex/logging/_Tee.py +5 -7
  416. scitex/logging/__init__.py +18 -19
  417. scitex/logging/_config.py +4 -1
  418. scitex/logging/_context.py +6 -5
  419. scitex/logging/_formatters.py +2 -3
  420. scitex/logging/_handlers.py +19 -20
  421. scitex/logging/_levels.py +9 -17
  422. scitex/logging/_logger.py +74 -15
  423. scitex/logging/_print_capture.py +17 -17
  424. scitex/msword/__init__.py +255 -0
  425. scitex/msword/profiles.py +357 -0
  426. scitex/msword/reader.py +753 -0
  427. scitex/msword/utils.py +289 -0
  428. scitex/msword/writer.py +362 -0
  429. scitex/nn/_BNet.py +1 -3
  430. scitex/nn/_Filters.py +6 -2
  431. scitex/nn/_ModulationIndex.py +3 -1
  432. scitex/nn/_PAC.py +3 -2
  433. scitex/nn/_PSD.py +0 -1
  434. scitex/nn/__init__.py +16 -3
  435. scitex/path/_clean.py +10 -8
  436. scitex/path/_find.py +1 -1
  437. scitex/path/_get_spath.py +1 -2
  438. scitex/path/_mk_spath.py +1 -1
  439. scitex/path/_symlink.py +5 -10
  440. scitex/pd/__init__.py +4 -1
  441. scitex/pd/_force_df.py +24 -24
  442. scitex/pd/_get_unique.py +1 -0
  443. scitex/pd/_merge_columns.py +1 -1
  444. scitex/pd/_round.py +11 -7
  445. scitex/pd/_to_xy.py +0 -1
  446. scitex/plt/__init__.py +190 -89
  447. scitex/plt/_subplots/_AxesWrapper.py +28 -12
  448. scitex/plt/_subplots/_AxisWrapper.py +114 -47
  449. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/__init__.py +36 -0
  450. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/_labels.py +264 -0
  451. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/_metadata.py +213 -0
  452. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/_visual.py +128 -0
  453. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/__init__.py +59 -0
  454. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_base.py +34 -0
  455. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_scientific.py +593 -0
  456. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_statistical.py +654 -0
  457. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_stx_aliases.py +527 -0
  458. scitex/plt/_subplots/_AxisWrapperMixins/_RawMatplotlibMixin.py +321 -0
  459. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/__init__.py +33 -0
  460. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_base.py +152 -0
  461. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_wrappers.py +600 -0
  462. scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
  463. scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
  464. scitex/plt/_subplots/_AxisWrapperMixins/__init__.py +79 -5
  465. scitex/plt/_subplots/_FigWrapper.py +97 -64
  466. scitex/plt/_subplots/_SubplotsWrapper.py +161 -84
  467. scitex/plt/_subplots/__init__.py +10 -0
  468. scitex/plt/_subplots/_export_as_csv.py +124 -52
  469. scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +9 -0
  470. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +14 -23
  471. scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
  472. scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
  473. scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
  474. scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
  475. scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
  476. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
  477. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +30 -17
  478. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
  479. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
  480. scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
  481. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
  482. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
  483. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
  484. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +34 -16
  485. scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +16 -8
  486. scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
  487. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
  488. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
  489. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +14 -1
  490. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +27 -18
  491. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +14 -5
  492. scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +16 -8
  493. scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
  494. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
  495. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
  496. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
  497. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
  498. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +23 -10
  499. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
  500. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +48 -40
  501. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +20 -6
  502. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
  503. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
  504. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
  505. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
  506. scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
  507. scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
  508. scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +17 -9
  509. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_bar.py +84 -0
  510. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_barh.py +85 -0
  511. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +31 -18
  512. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_contour.py +54 -0
  513. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +24 -11
  514. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_errorbar.py +120 -0
  515. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_fillv.py +35 -31
  516. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_heatmap.py +33 -23
  517. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_image.py +44 -28
  518. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_imshow.py +63 -0
  519. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_joyplot.py +31 -12
  520. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_line.py +34 -23
  521. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_mean_ci.py +32 -26
  522. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_mean_std.py +29 -23
  523. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_median_iqr.py +32 -26
  524. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_raster.py +21 -11
  525. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_rectangle.py +84 -56
  526. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_scatter.py +51 -0
  527. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_scatter_hist.py +46 -34
  528. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_shaded_line.py +46 -30
  529. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_violin.py +51 -51
  530. scitex/plt/_subplots/_export_as_csv_formatters/_format_text.py +32 -31
  531. scitex/plt/_subplots/_export_as_csv_formatters/_format_violin.py +34 -31
  532. scitex/plt/_subplots/_export_as_csv_formatters/_format_violinplot.py +44 -37
  533. scitex/plt/_subplots/_export_as_csv_formatters/verify_formatters.py +91 -74
  534. scitex/plt/_tpl.py +6 -5
  535. scitex/plt/ax/_plot/__init__.py +24 -0
  536. scitex/plt/ax/_plot/_add_fitted_line.py +12 -11
  537. scitex/plt/ax/_plot/_plot_circular_hist.py +3 -1
  538. scitex/plt/ax/_plot/_plot_statistical_shaded_line.py +25 -19
  539. scitex/plt/ax/_plot/_stx_conf_mat.py +6 -3
  540. scitex/plt/ax/_plot/_stx_ecdf.py +9 -5
  541. scitex/plt/ax/_plot/_stx_fillv.py +4 -2
  542. scitex/plt/ax/_plot/_stx_heatmap.py +7 -4
  543. scitex/plt/ax/_plot/_stx_image.py +7 -5
  544. scitex/plt/ax/_plot/_stx_joyplot.py +32 -10
  545. scitex/plt/ax/_plot/_stx_raster.py +26 -11
  546. scitex/plt/ax/_plot/_stx_rectangle.py +2 -2
  547. scitex/plt/ax/_plot/_stx_shaded_line.py +15 -11
  548. scitex/plt/ax/_plot/_stx_violin.py +3 -1
  549. scitex/plt/ax/_style/_add_marginal_ax.py +6 -4
  550. scitex/plt/ax/_style/_auto_scale_axis.py +14 -10
  551. scitex/plt/ax/_style/_extend.py +3 -1
  552. scitex/plt/ax/_style/_force_aspect.py +5 -3
  553. scitex/plt/ax/_style/_format_units.py +2 -2
  554. scitex/plt/ax/_style/_hide_spines.py +5 -1
  555. scitex/plt/ax/_style/_map_ticks.py +5 -3
  556. scitex/plt/ax/_style/_rotate_labels.py +5 -4
  557. scitex/plt/ax/_style/_rotate_labels_v01.py +73 -63
  558. scitex/plt/ax/_style/_set_log_scale.py +120 -85
  559. scitex/plt/ax/_style/_set_meta.py +99 -76
  560. scitex/plt/ax/_style/_set_supxyt.py +33 -16
  561. scitex/plt/ax/_style/_set_xyt.py +27 -18
  562. scitex/plt/ax/_style/_share_axes.py +15 -5
  563. scitex/plt/ax/_style/_show_spines.py +58 -57
  564. scitex/plt/ax/_style/_style_barplot.py +1 -1
  565. scitex/plt/ax/_style/_style_boxplot.py +25 -14
  566. scitex/plt/ax/_style/_style_errorbar.py +0 -0
  567. scitex/plt/ax/_style/_style_scatter.py +1 -1
  568. scitex/plt/ax/_style/_style_suptitles.py +3 -3
  569. scitex/plt/ax/_style/_style_violinplot.py +8 -2
  570. scitex/plt/color/__init__.py +34 -2
  571. scitex/plt/color/_add_hue_col.py +1 -0
  572. scitex/plt/color/_colors.py +0 -1
  573. scitex/plt/color/_get_colors_from_conf_matap.py +3 -1
  574. scitex/plt/color/_vizualize_colors.py +0 -1
  575. scitex/plt/docs/FIGURE_ARCHITECTURE.md +155 -97
  576. scitex/plt/gallery/README.md +75 -0
  577. scitex/plt/gallery/__init__.py +29 -0
  578. scitex/plt/gallery/_generate.py +560 -0
  579. scitex/plt/gallery/_plots.py +594 -0
  580. scitex/plt/gallery/_registry.py +153 -0
  581. scitex/plt/io/__init__.py +53 -0
  582. scitex/plt/io/_bundle.py +490 -0
  583. scitex/plt/io/_layered_bundle.py +1343 -0
  584. scitex/plt/styles/SCITEX_STYLE.yaml +26 -0
  585. scitex/plt/styles/__init__.py +23 -9
  586. scitex/plt/styles/_plot_defaults.py +62 -61
  587. scitex/plt/styles/_plot_postprocess.py +126 -77
  588. scitex/plt/styles/_style_loader.py +0 -0
  589. scitex/plt/styles/presets.py +121 -18
  590. scitex/plt/utils/__init__.py +42 -3
  591. scitex/plt/utils/_close.py +8 -3
  592. scitex/plt/utils/_collect_figure_metadata.py +3033 -271
  593. scitex/plt/utils/_colorbar.py +15 -17
  594. scitex/plt/utils/_configure_mpl.py +26 -30
  595. scitex/plt/utils/_crop.py +87 -36
  596. scitex/plt/utils/_csv_column_naming.py +177 -72
  597. scitex/plt/utils/_dimension_viewer.py +7 -19
  598. scitex/plt/utils/_figure_from_axes_mm.py +70 -16
  599. scitex/plt/utils/_figure_mm.py +119 -3
  600. scitex/plt/utils/_get_actual_font.py +5 -4
  601. scitex/plt/utils/_histogram_utils.py +52 -48
  602. scitex/plt/utils/_hitmap.py +1643 -0
  603. scitex/plt/utils/_is_valid_axis.py +19 -13
  604. scitex/plt/utils/_mk_colorbar.py +3 -3
  605. scitex/plt/utils/_scientific_captions.py +202 -139
  606. scitex/plt/utils/_scitex_config.py +98 -98
  607. scitex/plt/utils/_units.py +0 -0
  608. scitex/plt/utils/metadata/__init__.py +61 -0
  609. scitex/plt/utils/metadata/_artist_extraction.py +119 -0
  610. scitex/plt/utils/metadata/_axes_metadata.py +93 -0
  611. scitex/plt/utils/metadata/_collection_artists.py +292 -0
  612. scitex/plt/utils/metadata/_core.py +207 -0
  613. scitex/plt/utils/metadata/_csv_column_extraction.py +186 -0
  614. scitex/plt/utils/metadata/_csv_hash.py +115 -0
  615. scitex/plt/utils/metadata/_csv_verification.py +95 -0
  616. scitex/plt/utils/metadata/_data_linkage.py +263 -0
  617. scitex/plt/utils/metadata/_dimensions.py +242 -0
  618. scitex/plt/utils/metadata/_editable_export.py +405 -0
  619. scitex/plt/utils/metadata/_figure_metadata.py +58 -0
  620. scitex/plt/utils/metadata/_geometry_extraction.py +570 -0
  621. scitex/plt/utils/metadata/_image_text_artists.py +168 -0
  622. scitex/plt/utils/metadata/_label_parsing.py +82 -0
  623. scitex/plt/utils/metadata/_legend_extraction.py +120 -0
  624. scitex/plt/utils/metadata/_line_artists.py +367 -0
  625. scitex/plt/utils/metadata/_line_semantic_handling.py +173 -0
  626. scitex/plt/utils/metadata/_patch_artists.py +211 -0
  627. scitex/plt/utils/metadata/_plot_content.py +26 -0
  628. scitex/plt/utils/metadata/_plot_type_detection.py +184 -0
  629. scitex/plt/utils/metadata/_precision.py +134 -0
  630. scitex/plt/utils/metadata/_precision_config.py +68 -0
  631. scitex/plt/utils/metadata/_precision_sections.py +211 -0
  632. scitex/plt/utils/metadata/_recipe_extraction.py +267 -0
  633. scitex/plt/utils/metadata/_style_parsing.py +174 -0
  634. scitex/repro/_RandomStateManager.py +33 -38
  635. scitex/repro/__init__.py +16 -7
  636. scitex/repro/_gen_ID.py +7 -9
  637. scitex/repro/_gen_timestamp.py +7 -6
  638. scitex/repro/_hash_array.py +8 -12
  639. scitex/reproduce/__init__.py +1 -1
  640. scitex/resource/_get_processor_usages.py +3 -1
  641. scitex/resource/_log_processor_usages.py +3 -1
  642. scitex/rng/__init__.py +1 -1
  643. scitex/schema/README.md +178 -0
  644. scitex/schema/__init__.py +237 -0
  645. scitex/schema/_canvas.py +444 -0
  646. scitex/schema/_plot.py +1015 -0
  647. scitex/schema/_stats.py +762 -0
  648. scitex/schema/_validation.py +590 -0
  649. scitex/scholar/.legacy/Scholar.py +5 -12
  650. scitex/scholar/.legacy/_Scholar.py +66 -99
  651. scitex/scholar/.legacy/_ScholarAPI.py +75 -66
  652. scitex/scholar/.legacy/_tmp/search_engine/_BaseSearchEngine.py +3 -3
  653. scitex/scholar/.legacy/_tmp/search_engine/_UnifiedSearcher.py +4 -9
  654. scitex/scholar/.legacy/_tmp/search_engine/__init__.py +14 -21
  655. scitex/scholar/.legacy/_tmp/search_engine/local/_LocalSearchEngine.py +40 -37
  656. scitex/scholar/.legacy/_tmp/search_engine/local/_VectorSearchEngine.py +31 -28
  657. scitex/scholar/.legacy/_tmp/search_engine/web/_ArxivSearchEngine.py +74 -65
  658. scitex/scholar/.legacy/_tmp/search_engine/web/_CrossRefSearchEngine.py +122 -116
  659. scitex/scholar/.legacy/_tmp/search_engine/web/_GoogleScholarSearchEngine.py +65 -59
  660. scitex/scholar/.legacy/_tmp/search_engine/web/_PubMedSearchEngine.py +121 -107
  661. scitex/scholar/.legacy/_tmp/search_engine/web/_SemanticScholarSearchEngine.py +5 -12
  662. scitex/scholar/.legacy/database/_DatabaseEntry.py +49 -45
  663. scitex/scholar/.legacy/database/_DatabaseIndex.py +131 -94
  664. scitex/scholar/.legacy/database/_LibraryManager.py +65 -63
  665. scitex/scholar/.legacy/database/_PaperDatabase.py +138 -124
  666. scitex/scholar/.legacy/database/_ScholarDatabaseIntegration.py +14 -36
  667. scitex/scholar/.legacy/database/_StorageIntegratedDB.py +192 -156
  668. scitex/scholar/.legacy/database/_ZoteroCompatibleDB.py +300 -237
  669. scitex/scholar/.legacy/database/__init__.py +2 -1
  670. scitex/scholar/.legacy/database/manage.py +92 -84
  671. scitex/scholar/.legacy/lookup/_LookupIndex.py +157 -101
  672. scitex/scholar/.legacy/lookup/__init__.py +2 -1
  673. scitex/scholar/.legacy/metadata/doi/batch/_MetadataHandlerForBatchDOIResolution.py +4 -9
  674. scitex/scholar/.legacy/metadata/doi/batch/_ProgressManagerForBatchDOIResolution.py +10 -23
  675. scitex/scholar/.legacy/metadata/doi/batch/_SourceStatsManagerForBatchDOIResolution.py +4 -9
  676. scitex/scholar/.legacy/metadata/doi/batch/__init__.py +3 -1
  677. scitex/scholar/.legacy/metadata/doi/resolvers/_BatchDOIResolver.py +10 -25
  678. scitex/scholar/.legacy/metadata/doi/resolvers/_BibTeXDOIResolver.py +19 -49
  679. scitex/scholar/.legacy/metadata/doi/resolvers/_DOIResolver.py +1 -0
  680. scitex/scholar/.legacy/metadata/doi/resolvers/_SingleDOIResolver.py +8 -20
  681. scitex/scholar/.legacy/metadata/doi/sources/.combined-SemanticScholarSource/_SemanticScholarSource.py +37 -35
  682. scitex/scholar/.legacy/metadata/doi/sources/.combined-SemanticScholarSource/_SemanticScholarSourceEnhanced.py +49 -37
  683. scitex/scholar/.legacy/metadata/doi/sources/_ArXivSource.py +11 -30
  684. scitex/scholar/.legacy/metadata/doi/sources/_BaseDOISource.py +19 -47
  685. scitex/scholar/.legacy/metadata/doi/sources/_CrossRefLocalSource.py +1 -0
  686. scitex/scholar/.legacy/metadata/doi/sources/_CrossRefSource.py +12 -33
  687. scitex/scholar/.legacy/metadata/doi/sources/_OpenAlexSource.py +8 -20
  688. scitex/scholar/.legacy/metadata/doi/sources/_PubMedSource.py +10 -27
  689. scitex/scholar/.legacy/metadata/doi/sources/_SemanticScholarSource.py +11 -29
  690. scitex/scholar/.legacy/metadata/doi/sources/_SourceManager.py +8 -21
  691. scitex/scholar/.legacy/metadata/doi/sources/_SourceResolutionStrategy.py +24 -55
  692. scitex/scholar/.legacy/metadata/doi/sources/_SourceRotationManager.py +8 -21
  693. scitex/scholar/.legacy/metadata/doi/sources/_URLDOISource.py +9 -16
  694. scitex/scholar/.legacy/metadata/doi/sources/_UnifiedSource.py +8 -22
  695. scitex/scholar/.legacy/metadata/doi/sources/__init__.py +1 -0
  696. scitex/scholar/.legacy/metadata/doi/utils/_PubMedConverter.py +4 -8
  697. scitex/scholar/.legacy/metadata/doi/utils/_RateLimitHandler.py +17 -43
  698. scitex/scholar/.legacy/metadata/doi/utils/_TextNormalizer.py +8 -18
  699. scitex/scholar/.legacy/metadata/doi/utils/_URLDOIExtractor.py +4 -8
  700. scitex/scholar/.legacy/metadata/doi/utils/__init__.py +1 -0
  701. scitex/scholar/.legacy/metadata/doi/utils/_to_complete_metadata_structure.py +1 -0
  702. scitex/scholar/.legacy/metadata/enrichment/_LibraryEnricher.py +2 -3
  703. scitex/scholar/.legacy/metadata/enrichment/enrichers/_ImpactFactorEnricher.py +6 -12
  704. scitex/scholar/.legacy/metadata/enrichment/enrichers/_SmartEnricher.py +5 -10
  705. scitex/scholar/.legacy/metadata/enrichment/sources/_UnifiedMetadataSource.py +4 -5
  706. scitex/scholar/.legacy/metadata/query_to_full_meta_json.py +8 -12
  707. scitex/scholar/.legacy/metadata/urls/_URLMetadataHandler.py +3 -3
  708. scitex/scholar/.legacy/metadata/urls/_ZoteroTranslatorRunner.py +15 -21
  709. scitex/scholar/.legacy/metadata/urls/__init__.py +3 -3
  710. scitex/scholar/.legacy/metadata/urls/_finder.py +4 -6
  711. scitex/scholar/.legacy/metadata/urls/_handler.py +7 -15
  712. scitex/scholar/.legacy/metadata/urls/_resolver.py +6 -12
  713. scitex/scholar/.legacy/search/_Embedder.py +74 -69
  714. scitex/scholar/.legacy/search/_SemanticSearch.py +91 -90
  715. scitex/scholar/.legacy/search/_SemanticSearchEngine.py +104 -109
  716. scitex/scholar/.legacy/search/_UnifiedSearcher.py +530 -471
  717. scitex/scholar/.legacy/search/_VectorDatabase.py +111 -92
  718. scitex/scholar/.legacy/search/__init__.py +1 -0
  719. scitex/scholar/.legacy/storage/_EnhancedStorageManager.py +182 -154
  720. scitex/scholar/.legacy/storage/__init__.py +2 -1
  721. scitex/scholar/__init__.py +0 -2
  722. scitex/scholar/__main__.py +1 -3
  723. scitex/scholar/auth/ScholarAuthManager.py +13 -36
  724. scitex/scholar/auth/core/AuthenticationGateway.py +15 -29
  725. scitex/scholar/auth/core/BrowserAuthenticator.py +22 -57
  726. scitex/scholar/auth/core/StrategyResolver.py +10 -27
  727. scitex/scholar/auth/core/__init__.py +5 -1
  728. scitex/scholar/auth/gateway/_OpenURLLinkFinder.py +11 -21
  729. scitex/scholar/auth/gateway/_OpenURLResolver.py +10 -18
  730. scitex/scholar/auth/gateway/_resolve_functions.py +3 -3
  731. scitex/scholar/auth/providers/BaseAuthenticator.py +1 -0
  732. scitex/scholar/auth/providers/EZProxyAuthenticator.py +7 -14
  733. scitex/scholar/auth/providers/OpenAthensAuthenticator.py +29 -57
  734. scitex/scholar/auth/providers/ShibbolethAuthenticator.py +87 -73
  735. scitex/scholar/auth/session/AuthCacheManager.py +12 -22
  736. scitex/scholar/auth/session/SessionManager.py +4 -6
  737. scitex/scholar/auth/sso/BaseSSOAutomator.py +13 -19
  738. scitex/scholar/auth/sso/OpenAthensSSOAutomator.py +16 -45
  739. scitex/scholar/auth/sso/SSOAutomator.py +8 -15
  740. scitex/scholar/auth/sso/UniversityOfMelbourneSSOAutomator.py +13 -23
  741. scitex/scholar/browser/ScholarBrowserManager.py +31 -56
  742. scitex/scholar/browser/__init__.py +1 -0
  743. scitex/scholar/browser/utils/click_and_wait.py +3 -4
  744. scitex/scholar/browser/utils/close_unwanted_pages.py +4 -7
  745. scitex/scholar/browser/utils/wait_redirects.py +15 -40
  746. scitex/scholar/citation_graph/__init__.py +0 -0
  747. scitex/scholar/citation_graph/builder.py +3 -7
  748. scitex/scholar/citation_graph/database.py +4 -11
  749. scitex/scholar/citation_graph/example.py +5 -10
  750. scitex/scholar/citation_graph/models.py +0 -0
  751. scitex/scholar/cli/_url_utils.py +1 -1
  752. scitex/scholar/cli/chrome.py +5 -3
  753. scitex/scholar/cli/download_pdf.py +13 -14
  754. scitex/scholar/cli/handlers/bibtex_handler.py +4 -12
  755. scitex/scholar/cli/handlers/doi_handler.py +1 -3
  756. scitex/scholar/cli/handlers/project_handler.py +6 -20
  757. scitex/scholar/cli/open_browser.py +41 -39
  758. scitex/scholar/cli/open_browser_auto.py +31 -39
  759. scitex/scholar/cli/open_browser_monitored.py +27 -24
  760. scitex/scholar/config/ScholarConfig.py +5 -8
  761. scitex/scholar/config/__init__.py +1 -0
  762. scitex/scholar/config/core/_CascadeConfig.py +3 -3
  763. scitex/scholar/config/core/_PathManager.py +16 -28
  764. scitex/scholar/core/Paper.py +79 -78
  765. scitex/scholar/core/Papers.py +16 -27
  766. scitex/scholar/core/Scholar.py +98 -229
  767. scitex/scholar/core/journal_normalizer.py +52 -49
  768. scitex/scholar/core/oa_cache.py +27 -23
  769. scitex/scholar/core/open_access.py +17 -8
  770. scitex/scholar/docs/template.py +4 -3
  771. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/clf_svm.py +0 -0
  772. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/download.py +0 -0
  773. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_conf_mat.py +0 -0
  774. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_digits.py +0 -0
  775. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_umap_space.py +0 -0
  776. scitex/scholar/examples/00_config.py +10 -9
  777. scitex/scholar/examples/01_auth.py +3 -0
  778. scitex/scholar/examples/02_browser.py +14 -10
  779. scitex/scholar/examples/03_01-engine.py +3 -0
  780. scitex/scholar/examples/03_02-engine-for-bibtex.py +4 -3
  781. scitex/scholar/examples/04_01-url.py +9 -9
  782. scitex/scholar/examples/04_02-url-for-bibtex.py +7 -3
  783. scitex/scholar/examples/04_02-url-for-dois.py +87 -97
  784. scitex/scholar/examples/05_download_pdf.py +10 -4
  785. scitex/scholar/examples/06_find_and_download.py +6 -6
  786. scitex/scholar/examples/06_parse_bibtex.py +17 -17
  787. scitex/scholar/examples/07_storage_integration.py +6 -9
  788. scitex/scholar/examples/99_fullpipeline-for-bibtex.py +14 -15
  789. scitex/scholar/examples/99_fullpipeline-for-one-entry.py +31 -23
  790. scitex/scholar/examples/99_maintenance.py +3 -0
  791. scitex/scholar/examples/dev.py +2 -3
  792. scitex/scholar/examples/zotero_integration.py +11 -18
  793. scitex/scholar/impact_factor/ImpactFactorEngine.py +7 -9
  794. scitex/scholar/impact_factor/estimation/__init__.py +4 -4
  795. scitex/scholar/impact_factor/estimation/core/__init__.py +3 -7
  796. scitex/scholar/impact_factor/estimation/core/cache_manager.py +223 -211
  797. scitex/scholar/impact_factor/estimation/core/calculator.py +165 -131
  798. scitex/scholar/impact_factor/estimation/core/journal_matcher.py +217 -172
  799. scitex/scholar/impact_factor/jcr/ImpactFactorJCREngine.py +6 -14
  800. scitex/scholar/impact_factor/jcr/build_database.py +4 -3
  801. scitex/scholar/integration/base.py +9 -17
  802. scitex/scholar/integration/mendeley/exporter.py +2 -4
  803. scitex/scholar/integration/mendeley/importer.py +3 -3
  804. scitex/scholar/integration/mendeley/linker.py +3 -3
  805. scitex/scholar/integration/mendeley/mapper.py +9 -6
  806. scitex/scholar/integration/zotero/__main__.py +26 -43
  807. scitex/scholar/integration/zotero/exporter.py +15 -11
  808. scitex/scholar/integration/zotero/importer.py +12 -10
  809. scitex/scholar/integration/zotero/linker.py +8 -12
  810. scitex/scholar/integration/zotero/mapper.py +17 -12
  811. scitex/scholar/metadata_engines/.combined-SemanticScholarSource/_SemanticScholarSource.py +37 -35
  812. scitex/scholar/metadata_engines/.combined-SemanticScholarSource/_SemanticScholarSourceEnhanced.py +47 -35
  813. scitex/scholar/metadata_engines/ScholarEngine.py +21 -43
  814. scitex/scholar/metadata_engines/__init__.py +1 -0
  815. scitex/scholar/metadata_engines/individual/ArXivEngine.py +15 -37
  816. scitex/scholar/metadata_engines/individual/CrossRefEngine.py +15 -42
  817. scitex/scholar/metadata_engines/individual/CrossRefLocalEngine.py +24 -45
  818. scitex/scholar/metadata_engines/individual/OpenAlexEngine.py +11 -21
  819. scitex/scholar/metadata_engines/individual/PubMedEngine.py +10 -27
  820. scitex/scholar/metadata_engines/individual/SemanticScholarEngine.py +28 -35
  821. scitex/scholar/metadata_engines/individual/URLDOIEngine.py +11 -22
  822. scitex/scholar/metadata_engines/individual/_BaseDOIEngine.py +20 -49
  823. scitex/scholar/metadata_engines/utils/_PubMedConverter.py +4 -8
  824. scitex/scholar/metadata_engines/utils/_URLDOIExtractor.py +5 -10
  825. scitex/scholar/metadata_engines/utils/__init__.py +2 -0
  826. scitex/scholar/metadata_engines/utils/_metadata2bibtex.py +3 -0
  827. scitex/scholar/metadata_engines/utils/_standardize_metadata.py +2 -3
  828. scitex/scholar/pdf_download/ScholarPDFDownloader.py +25 -37
  829. scitex/scholar/pdf_download/strategies/chrome_pdf_viewer.py +11 -19
  830. scitex/scholar/pdf_download/strategies/direct_download.py +5 -9
  831. scitex/scholar/pdf_download/strategies/manual_download_fallback.py +3 -3
  832. scitex/scholar/pdf_download/strategies/manual_download_utils.py +6 -13
  833. scitex/scholar/pdf_download/strategies/open_access_download.py +49 -31
  834. scitex/scholar/pdf_download/strategies/response_body.py +8 -19
  835. scitex/scholar/pipelines/ScholarPipelineBibTeX.py +9 -18
  836. scitex/scholar/pipelines/ScholarPipelineMetadataParallel.py +25 -26
  837. scitex/scholar/pipelines/ScholarPipelineMetadataSingle.py +62 -23
  838. scitex/scholar/pipelines/ScholarPipelineParallel.py +13 -30
  839. scitex/scholar/pipelines/ScholarPipelineSearchParallel.py +299 -220
  840. scitex/scholar/pipelines/ScholarPipelineSearchSingle.py +202 -165
  841. scitex/scholar/pipelines/ScholarPipelineSingle.py +25 -51
  842. scitex/scholar/pipelines/SearchQueryParser.py +55 -55
  843. scitex/scholar/search_engines/ScholarSearchEngine.py +31 -27
  844. scitex/scholar/search_engines/_BaseSearchEngine.py +20 -23
  845. scitex/scholar/search_engines/individual/ArXivSearchEngine.py +53 -35
  846. scitex/scholar/search_engines/individual/CrossRefSearchEngine.py +47 -40
  847. scitex/scholar/search_engines/individual/OpenAlexSearchEngine.py +55 -50
  848. scitex/scholar/search_engines/individual/PubMedSearchEngine.py +8 -10
  849. scitex/scholar/search_engines/individual/SemanticScholarSearchEngine.py +55 -49
  850. scitex/scholar/storage/BibTeXHandler.py +150 -95
  851. scitex/scholar/storage/PaperIO.py +3 -6
  852. scitex/scholar/storage/ScholarLibrary.py +70 -49
  853. scitex/scholar/storage/_DeduplicationManager.py +52 -25
  854. scitex/scholar/storage/_LibraryCacheManager.py +19 -46
  855. scitex/scholar/storage/_LibraryManager.py +65 -175
  856. scitex/scholar/url_finder/ScholarURLFinder.py +9 -25
  857. scitex/scholar/url_finder/strategies/find_pdf_urls_by_direct_links.py +1 -1
  858. scitex/scholar/url_finder/strategies/find_pdf_urls_by_href.py +6 -10
  859. scitex/scholar/url_finder/strategies/find_pdf_urls_by_navigation.py +4 -6
  860. scitex/scholar/url_finder/strategies/find_pdf_urls_by_publisher_patterns.py +8 -15
  861. scitex/scholar/url_finder/strategies/find_pdf_urls_by_zotero_translators.py +3 -3
  862. scitex/scholar/url_finder/strategies/find_supplementary_urls_by_href.py +3 -3
  863. scitex/scholar/url_finder/translators/core/patterns.py +6 -4
  864. scitex/scholar/url_finder/translators/core/registry.py +6 -9
  865. scitex/scholar/url_finder/translators/individual/BOFiP_Impots.py +60 -52
  866. scitex/scholar/url_finder/translators/individual/Baidu_Scholar.py +54 -62
  867. scitex/scholar/url_finder/translators/individual/Bangkok_Post.py +38 -44
  868. scitex/scholar/url_finder/translators/individual/Baruch_Foundation.py +43 -47
  869. scitex/scholar/url_finder/translators/individual/Beobachter.py +46 -50
  870. scitex/scholar/url_finder/translators/individual/Bezneng_Gajit.py +37 -41
  871. scitex/scholar/url_finder/translators/individual/BibLaTeX.py +59 -52
  872. scitex/scholar/url_finder/translators/individual/BibTeX.py +83 -79
  873. scitex/scholar/url_finder/translators/individual/Biblio_com.py +48 -51
  874. scitex/scholar/url_finder/translators/individual/Bibliontology_RDF.py +58 -56
  875. scitex/scholar/url_finder/translators/individual/Camara_Brasileira_do_Livro_ISBN.py +102 -99
  876. scitex/scholar/url_finder/translators/individual/CanLII.py +49 -43
  877. scitex/scholar/url_finder/translators/individual/Canada_com.py +36 -40
  878. scitex/scholar/url_finder/translators/individual/Canadian_Letters_and_Images.py +43 -43
  879. scitex/scholar/url_finder/translators/individual/Canadiana_ca.py +77 -66
  880. scitex/scholar/url_finder/translators/individual/Cascadilla_Proceedings_Project.py +68 -62
  881. scitex/scholar/url_finder/translators/individual/Central_and_Eastern_European_Online_Library_Journals.py +60 -60
  882. scitex/scholar/url_finder/translators/individual/Champlain_Society_Collection.py +63 -61
  883. scitex/scholar/url_finder/translators/individual/Chicago_Journal_of_Theoretical_Computer_Science.py +74 -58
  884. scitex/scholar/url_finder/translators/individual/Christian_Science_Monitor.py +32 -38
  885. scitex/scholar/url_finder/translators/individual/Columbia_University_Press.py +51 -47
  886. scitex/scholar/url_finder/translators/individual/Common_Place.py +66 -57
  887. scitex/scholar/url_finder/translators/individual/Cornell_LII.py +66 -62
  888. scitex/scholar/url_finder/translators/individual/Cornell_University_Press.py +38 -45
  889. scitex/scholar/url_finder/translators/individual/CourtListener.py +52 -56
  890. scitex/scholar/url_finder/translators/individual/DAI_Zenon.py +53 -54
  891. scitex/scholar/url_finder/translators/individual/access_medicine.py +27 -33
  892. scitex/scholar/url_finder/translators/individual/acm.py +1 -1
  893. scitex/scholar/url_finder/translators/individual/acm_digital_library.py +93 -63
  894. scitex/scholar/url_finder/translators/individual/airiti.py +3 -1
  895. scitex/scholar/url_finder/translators/individual/aosic.py +3 -1
  896. scitex/scholar/url_finder/translators/individual/archive_ouverte_aosic.py +3 -1
  897. scitex/scholar/url_finder/translators/individual/archive_ouverte_en_sciences_de_l_information_et_de_la_communication___aosic_.py +6 -2
  898. scitex/scholar/url_finder/translators/individual/artforum.py +35 -27
  899. scitex/scholar/url_finder/translators/individual/arxiv.py +1 -1
  900. scitex/scholar/url_finder/translators/individual/arxiv_org.py +8 -4
  901. scitex/scholar/url_finder/translators/individual/atlanta_journal_constitution.py +22 -18
  902. scitex/scholar/url_finder/translators/individual/atypon_journals.py +19 -11
  903. scitex/scholar/url_finder/translators/individual/austlii_and_nzlii.py +48 -44
  904. scitex/scholar/url_finder/translators/individual/australian_dictionary_of_biography.py +21 -17
  905. scitex/scholar/url_finder/translators/individual/bailii.py +22 -19
  906. scitex/scholar/url_finder/translators/individual/bbc.py +46 -42
  907. scitex/scholar/url_finder/translators/individual/bbc_genome.py +37 -25
  908. scitex/scholar/url_finder/translators/individual/biblioteca_nacional_de_maestros.py +24 -20
  909. scitex/scholar/url_finder/translators/individual/bibliotheque_archives_nationale_quebec_pistard.py +42 -43
  910. scitex/scholar/url_finder/translators/individual/bibliotheque_archives_nationales_quebec.py +87 -81
  911. scitex/scholar/url_finder/translators/individual/bibliotheque_nationale_france.py +39 -37
  912. scitex/scholar/url_finder/translators/individual/bibsys.py +32 -28
  913. scitex/scholar/url_finder/translators/individual/bioconductor.py +58 -52
  914. scitex/scholar/url_finder/translators/individual/biomed_central.py +23 -15
  915. scitex/scholar/url_finder/translators/individual/biorxiv.py +26 -13
  916. scitex/scholar/url_finder/translators/individual/blogger.py +39 -43
  917. scitex/scholar/url_finder/translators/individual/bloomberg.py +48 -52
  918. scitex/scholar/url_finder/translators/individual/bloomsbury_food_library.py +37 -37
  919. scitex/scholar/url_finder/translators/individual/bluesky.py +30 -28
  920. scitex/scholar/url_finder/translators/individual/bnf_isbn.py +1 -1
  921. scitex/scholar/url_finder/translators/individual/bocc.py +66 -60
  922. scitex/scholar/url_finder/translators/individual/boe.py +52 -52
  923. scitex/scholar/url_finder/translators/individual/brill.py +3 -1
  924. scitex/scholar/url_finder/translators/individual/business_standard.py +36 -38
  925. scitex/scholar/url_finder/translators/individual/cabi_cab_abstracts.py +39 -41
  926. scitex/scholar/url_finder/translators/individual/cambridge.py +3 -1
  927. scitex/scholar/url_finder/translators/individual/cambridge_core.py +30 -24
  928. scitex/scholar/url_finder/translators/individual/caod.py +50 -46
  929. scitex/scholar/url_finder/translators/individual/cbc.py +91 -67
  930. scitex/scholar/url_finder/translators/individual/ccfr_bnf.py +49 -53
  931. scitex/scholar/url_finder/translators/individual/cia_world_factbook.py +43 -33
  932. scitex/scholar/url_finder/translators/individual/crossref_rest.py +208 -174
  933. scitex/scholar/url_finder/translators/individual/current_affairs.py +29 -35
  934. scitex/scholar/url_finder/translators/individual/dabi.py +70 -66
  935. scitex/scholar/url_finder/translators/individual/dagens_nyheter.py +3 -1
  936. scitex/scholar/url_finder/translators/individual/dagstuhl.py +10 -15
  937. scitex/scholar/url_finder/translators/individual/dar_almandumah.py +13 -9
  938. scitex/scholar/url_finder/translators/individual/dart_europe.py +19 -22
  939. scitex/scholar/url_finder/translators/individual/data_gov.py +2 -2
  940. scitex/scholar/url_finder/translators/individual/databrary.py +27 -28
  941. scitex/scholar/url_finder/translators/individual/datacite_json.py +152 -137
  942. scitex/scholar/url_finder/translators/individual/dataverse.py +68 -64
  943. scitex/scholar/url_finder/translators/individual/daum_news.py +38 -38
  944. scitex/scholar/url_finder/translators/individual/dblp.py +4 -8
  945. scitex/scholar/url_finder/translators/individual/dblp_computer_science_bibliography.py +8 -3
  946. scitex/scholar/url_finder/translators/individual/dbpia.py +5 -3
  947. scitex/scholar/url_finder/translators/individual/defense_technical_information_center.py +30 -28
  948. scitex/scholar/url_finder/translators/individual/delpher.py +102 -79
  949. scitex/scholar/url_finder/translators/individual/demographic_research.py +35 -31
  950. scitex/scholar/url_finder/translators/individual/denik_cz.py +58 -54
  951. scitex/scholar/url_finder/translators/individual/depatisnet.py +7 -10
  952. scitex/scholar/url_finder/translators/individual/der_freitag.py +81 -66
  953. scitex/scholar/url_finder/translators/individual/der_spiegel.py +56 -54
  954. scitex/scholar/url_finder/translators/individual/digibib_net.py +3 -1
  955. scitex/scholar/url_finder/translators/individual/digizeitschriften.py +3 -1
  956. scitex/scholar/url_finder/translators/individual/dpla.py +13 -14
  957. scitex/scholar/url_finder/translators/individual/dspace.py +2 -2
  958. scitex/scholar/url_finder/translators/individual/ebrary.py +3 -1
  959. scitex/scholar/url_finder/translators/individual/ebscohost.py +3 -1
  960. scitex/scholar/url_finder/translators/individual/electronic_colloquium_on_computational_complexity.py +3 -1
  961. scitex/scholar/url_finder/translators/individual/elife.py +3 -1
  962. scitex/scholar/url_finder/translators/individual/elsevier_health_journals.py +3 -1
  963. scitex/scholar/url_finder/translators/individual/emerald.py +3 -1
  964. scitex/scholar/url_finder/translators/individual/emerald_insight.py +3 -1
  965. scitex/scholar/url_finder/translators/individual/epicurious.py +3 -1
  966. scitex/scholar/url_finder/translators/individual/eurogamerusgamer.py +3 -1
  967. scitex/scholar/url_finder/translators/individual/fachportal_padagogik.py +3 -1
  968. scitex/scholar/url_finder/translators/individual/frontiers.py +1 -1
  969. scitex/scholar/url_finder/translators/individual/gale_databases.py +3 -1
  970. scitex/scholar/url_finder/translators/individual/gms_german_medical_science.py +6 -2
  971. scitex/scholar/url_finder/translators/individual/ieee_computer_society.py +6 -2
  972. scitex/scholar/url_finder/translators/individual/ieee_xplore.py +41 -35
  973. scitex/scholar/url_finder/translators/individual/inter_research_science_center.py +6 -2
  974. scitex/scholar/url_finder/translators/individual/jisc_historical_texts.py +3 -1
  975. scitex/scholar/url_finder/translators/individual/jstor.py +14 -12
  976. scitex/scholar/url_finder/translators/individual/korean_national_library.py +3 -1
  977. scitex/scholar/url_finder/translators/individual/la_times.py +3 -1
  978. scitex/scholar/url_finder/translators/individual/landesbibliographie_baden_wurttemberg.py +3 -1
  979. scitex/scholar/url_finder/translators/individual/legislative_insight.py +3 -1
  980. scitex/scholar/url_finder/translators/individual/libraries_tasmania.py +3 -1
  981. scitex/scholar/url_finder/translators/individual/library_catalog__koha_.py +3 -1
  982. scitex/scholar/url_finder/translators/individual/lingbuzz.py +2 -2
  983. scitex/scholar/url_finder/translators/individual/max_planck_institute_for_the_history_of_science_virtual_laboratory_library.py +3 -1
  984. scitex/scholar/url_finder/translators/individual/mdpi.py +12 -6
  985. scitex/scholar/url_finder/translators/individual/microbiology_society_journals.py +3 -1
  986. scitex/scholar/url_finder/translators/individual/midas_journals.py +3 -1
  987. scitex/scholar/url_finder/translators/individual/nagoya_university_opac.py +3 -1
  988. scitex/scholar/url_finder/translators/individual/nature_publishing_group.py +32 -19
  989. scitex/scholar/url_finder/translators/individual/ntsb_accident_reports.py +3 -1
  990. scitex/scholar/url_finder/translators/individual/openedition_journals.py +8 -4
  991. scitex/scholar/url_finder/translators/individual/orcid.py +16 -15
  992. scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
  993. scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
  994. scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
  995. scitex/scholar/url_finder/translators/individual/plos.py +9 -12
  996. scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
  997. scitex/scholar/url_finder/translators/individual/primo.py +3 -1
  998. scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
  999. scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
  1000. scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
  1001. scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
  1002. scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
  1003. scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
  1004. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  1005. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  1006. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  1007. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  1008. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  1009. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  1010. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  1011. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  1012. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  1013. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  1014. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  1015. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  1016. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  1017. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  1018. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  1019. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  1020. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  1021. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  1022. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  1023. scitex/scholar/utils/validation/__init__.py +0 -0
  1024. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  1025. scitex/scholar/zotero/__init__.py +1 -1
  1026. scitex/security/cli.py +7 -20
  1027. scitex/security/github.py +45 -32
  1028. scitex/session/__init__.py +8 -9
  1029. scitex/session/_decorator.py +49 -42
  1030. scitex/session/_lifecycle.py +39 -39
  1031. scitex/session/_manager.py +24 -20
  1032. scitex/sh/__init__.py +4 -3
  1033. scitex/sh/_execute.py +10 -7
  1034. scitex/sh/_security.py +3 -3
  1035. scitex/sh/_types.py +2 -3
  1036. scitex/stats/__init__.py +174 -6
  1037. scitex/stats/_schema.py +42 -569
  1038. scitex/stats/auto/__init__.py +188 -0
  1039. scitex/stats/auto/_context.py +331 -0
  1040. scitex/stats/auto/_formatting.py +679 -0
  1041. scitex/stats/auto/_rules.py +901 -0
  1042. scitex/stats/auto/_selector.py +554 -0
  1043. scitex/stats/auto/_styles.py +721 -0
  1044. scitex/stats/correct/__init__.py +4 -4
  1045. scitex/stats/correct/_correct_bonferroni.py +43 -34
  1046. scitex/stats/correct/_correct_fdr.py +14 -40
  1047. scitex/stats/correct/_correct_fdr_.py +39 -46
  1048. scitex/stats/correct/_correct_holm.py +14 -32
  1049. scitex/stats/correct/_correct_sidak.py +36 -21
  1050. scitex/stats/descriptive/_circular.py +20 -21
  1051. scitex/stats/descriptive/_describe.py +19 -5
  1052. scitex/stats/descriptive/_nan.py +5 -7
  1053. scitex/stats/descriptive/_real.py +4 -3
  1054. scitex/stats/effect_sizes/__init__.py +10 -11
  1055. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  1056. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  1057. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  1058. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  1059. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  1060. scitex/stats/io/__init__.py +29 -0
  1061. scitex/stats/io/_bundle.py +156 -0
  1062. scitex/stats/posthoc/__init__.py +3 -3
  1063. scitex/stats/posthoc/_dunnett.py +75 -55
  1064. scitex/stats/posthoc/_games_howell.py +61 -43
  1065. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  1066. scitex/stats/power/__init__.py +2 -2
  1067. scitex/stats/power/_power.py +56 -56
  1068. scitex/stats/tests/__init__.py +1 -1
  1069. scitex/stats/tests/correlation/__init__.py +1 -1
  1070. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  1071. scitex/stats/utils/__init__.py +14 -17
  1072. scitex/stats/utils/_effect_size.py +85 -78
  1073. scitex/stats/utils/_formatters.py +49 -43
  1074. scitex/stats/utils/_normalizers.py +7 -14
  1075. scitex/stats/utils/_power.py +56 -56
  1076. scitex/str/__init__.py +1 -0
  1077. scitex/str/_clean_path.py +3 -3
  1078. scitex/str/_factor_out_digits.py +86 -58
  1079. scitex/str/_format_plot_text.py +180 -111
  1080. scitex/str/_latex.py +19 -19
  1081. scitex/str/_latex_fallback.py +9 -10
  1082. scitex/str/_parse.py +3 -6
  1083. scitex/str/_print_debug.py +13 -13
  1084. scitex/str/_printc.py +2 -0
  1085. scitex/str/_search.py +3 -3
  1086. scitex/template/.legacy/_clone_project.py +9 -13
  1087. scitex/template/__init__.py +10 -2
  1088. scitex/template/_clone_project.py +7 -2
  1089. scitex/template/_copy.py +1 -0
  1090. scitex/template/_customize.py +3 -6
  1091. scitex/template/_git_strategy.py +2 -3
  1092. scitex/template/_rename.py +1 -0
  1093. scitex/template/clone_pip_project.py +6 -7
  1094. scitex/template/clone_research.py +7 -10
  1095. scitex/template/clone_singularity.py +6 -7
  1096. scitex/template/clone_writer_directory.py +6 -7
  1097. scitex/tex/__init__.py +4 -0
  1098. scitex/tex/_export.py +890 -0
  1099. scitex/tex/_preview.py +26 -11
  1100. scitex/tex/_to_vec.py +10 -7
  1101. scitex/torch/__init__.py +11 -1
  1102. scitex/types/_ArrayLike.py +2 -0
  1103. scitex/types/_is_listed_X.py +3 -3
  1104. scitex/units.py +110 -77
  1105. scitex/utils/_compress_hdf5.py +3 -3
  1106. scitex/utils/_email.py +8 -4
  1107. scitex/utils/_notify.py +14 -8
  1108. scitex/utils/_search.py +6 -6
  1109. scitex/utils/_verify_scitex_format.py +17 -42
  1110. scitex/utils/_verify_scitex_format_v01.py +12 -34
  1111. scitex/utils/template.py +4 -3
  1112. scitex/web/__init__.py +7 -1
  1113. scitex/web/_scraping.py +54 -38
  1114. scitex/web/_search_pubmed.py +30 -14
  1115. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1116. scitex/writer/.legacy/_compile.py +18 -28
  1117. scitex/writer/Writer.py +8 -21
  1118. scitex/writer/__init__.py +11 -11
  1119. scitex/writer/_clone_writer_project.py +2 -6
  1120. scitex/writer/_compile/__init__.py +1 -0
  1121. scitex/writer/_compile/_parser.py +1 -0
  1122. scitex/writer/_compile/_runner.py +35 -38
  1123. scitex/writer/_compile/_validator.py +1 -0
  1124. scitex/writer/_compile/manuscript.py +1 -0
  1125. scitex/writer/_compile/revision.py +1 -0
  1126. scitex/writer/_compile/supplementary.py +1 -0
  1127. scitex/writer/_compile_async.py +5 -12
  1128. scitex/writer/_project/__init__.py +1 -0
  1129. scitex/writer/_project/_create.py +10 -25
  1130. scitex/writer/_project/_trees.py +4 -9
  1131. scitex/writer/_project/_validate.py +2 -3
  1132. scitex/writer/_validate_tree_structures.py +7 -18
  1133. scitex/writer/dataclasses/__init__.py +8 -10
  1134. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1135. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1136. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1137. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1138. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1139. scitex/writer/dataclasses/core/_Document.py +2 -3
  1140. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1141. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1142. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1143. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1144. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1145. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1146. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1147. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1148. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1149. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1150. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1151. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1152. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1153. scitex/writer/utils/_parse_script_args.py +20 -23
  1154. scitex/writer/utils/_watch.py +5 -5
  1155. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/METADATA +14 -10
  1156. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/RECORD +1149 -985
  1157. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1158. scitex/io/memo.md +0 -2827
  1159. scitex/plt/_subplots/TODO.md +0 -53
  1160. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +0 -537
  1161. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +0 -1499
  1162. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +0 -431
  1163. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1164. scitex/vis/__init__.py +0 -177
  1165. scitex/vis/editor/_defaults.py +0 -244
  1166. scitex/vis/editor/_edit.py +0 -378
  1167. scitex/vis/editor/flask_editor/__init__.py +0 -21
  1168. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1169. scitex/vis/editor/flask_editor/core.py +0 -152
  1170. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1171. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1172. scitex/vis/editor/flask_editor/templates/html.py +0 -295
  1173. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1174. scitex/vis/editor/flask_editor/templates/styles.py +0 -549
  1175. /scitex/{vis → fig}/README.md +0 -0
  1176. /scitex/{vis → fig}/docs/CANVAS_ARCHITECTURE.md +0 -0
  1177. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/WHEEL +0 -0
  1178. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/entry_points.txt +0 -0
  1179. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/licenses/LICENSE +0 -0
@@ -5,9 +5,8 @@
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./src/scitex/browser/core/ChromeProfileManager.py"
10
- )
8
+
9
+ __FILE__ = "./src/scitex/browser/core/ChromeProfileManager.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
 
@@ -56,9 +55,7 @@ class ChromeProfileManager:
56
55
 
57
56
  AVAILABLE_PROFILE_NAMES = ["system", "extension", "auth", "stealth"]
58
57
 
59
- def __init__(
60
- self, profile_name: str, config: Optional[ScholarConfig] = None
61
- ):
58
+ def __init__(self, profile_name: str, config: Optional[ScholarConfig] = None):
62
59
  self.name = self.__class__.__name__
63
60
  self.config = config or ScholarConfig()
64
61
  # Allow dynamic profile names (e.g., worker_0, worker_1) for parallel downloads
@@ -171,9 +168,7 @@ class ChromeProfileManager:
171
168
 
172
169
  return extension_args
173
170
 
174
- async def install_extensions_manually_if_not_installed_async(
175
- self, verbose=False
176
- ):
171
+ async def install_extensions_manually_if_not_installed_async(self, verbose=False):
177
172
  """Open Chrome for manual extension installation."""
178
173
  if self.check_extensions_installed(verbose=verbose):
179
174
  return True
@@ -223,9 +218,7 @@ class ChromeProfileManager:
223
218
  print("\n" + "=" * 60)
224
219
  print("Chrome Extension Installation")
225
220
  print("=" * 60)
226
- print(
227
- "Install extensions from the opened Chrome tabs, then press Enter"
228
- )
221
+ print("Install extensions from the opened Chrome tabs, then press Enter")
229
222
 
230
223
  try:
231
224
  input("Press Enter when done...")
@@ -280,22 +273,16 @@ class ChromeProfileManager:
280
273
  """
281
274
  import time
282
275
 
283
- source_profile_dir = self.config.get_cache_chrome_dir(
284
- source_profile_name
285
- )
276
+ source_profile_dir = self.config.get_cache_chrome_dir(source_profile_name)
286
277
 
287
278
  if not source_profile_dir.exists():
288
- logger.error(
289
- f"Source profile does not exist: {source_profile_dir}"
290
- )
279
+ logger.error(f"Source profile does not exist: {source_profile_dir}")
291
280
  return False
292
281
 
293
282
  # Create target profile directory if needed
294
283
  self.profile_dir.mkdir(parents=True, exist_ok=True)
295
284
 
296
- logger.debug(
297
- f"Syncing profile: {self.profile_name} ← {source_profile_name}"
298
- )
285
+ logger.debug(f"Syncing profile: {self.profile_name} ← {source_profile_name}")
299
286
  logger.debug(f" Source: {source_profile_dir}")
300
287
  logger.debug(f" Target: {self.profile_dir}")
301
288
 
@@ -356,9 +343,7 @@ class ChromeProfileManager:
356
343
  return True
357
344
 
358
345
  except subprocess.CalledProcessError as e:
359
- logger.error(
360
- f"rsync failed (exit code {e.returncode}): {e.stderr}"
361
- )
346
+ logger.error(f"rsync failed (exit code {e.returncode}): {e.stderr}")
362
347
  return False
363
348
  except FileNotFoundError:
364
349
  logger.error("rsync command not found - please install rsync")
@@ -1,13 +1,12 @@
1
1
  #!/usr/bin/env python3
2
2
  # -*- coding: utf-8 -*-
3
- # Timestamp: "2025-10-11 01:18:11 (ywatanabe)"
4
- # File: /home/ywatanabe/proj/scitex_repo/src/scitex/browser/debugging/_browser_logger.py
3
+ # Timestamp: "2025-12-09 (ywatanabe)"
4
+ # File: /home/ywatanabe/proj/scitex-code/src/scitex/browser/debugging/_browser_logger.py
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./src/scitex/browser/debugging/_browser_logger.py"
10
- )
8
+
9
+ __FILE__ = "./src/scitex/browser/debugging/_browser_logger.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
 
@@ -26,7 +25,7 @@ IO:
26
25
  - input-files:
27
26
  - None
28
27
  - output-files:
29
- - ~/.scitex/browser/screenshots/{category}/{timestamp}_{message}.png
28
+ - $SCITEX_DIR/browser/screenshots/{category}/{timestamp}_{message}.png
30
29
  """
31
30
 
32
31
  """Imports"""
@@ -35,6 +34,7 @@ from datetime import datetime
35
34
  from pathlib import Path
36
35
 
37
36
  from scitex import logging
37
+ from scitex.config import get_paths
38
38
 
39
39
  logger = logging.getLogger(__name__)
40
40
 
@@ -152,7 +152,7 @@ async def log_page_async(
152
152
  # Only show popup if level is high enough
153
153
  if should_show_popup:
154
154
  await page.evaluate(
155
- f"""
155
+ f"""
156
156
  () => {{
157
157
  if (!window._scitexMessages) {{
158
158
  window._scitexMessages = [];
@@ -251,7 +251,7 @@ async def log_page_async(
251
251
  "domcontentloaded", timeout=5000
252
252
  )
253
253
  await page.evaluate(
254
- """
254
+ """
255
255
  () => {
256
256
  if (window._scitexMessages && window._scitexMessages.length > 0) {
257
257
  if (!document.getElementById('_scitex_popup_container')) {
@@ -340,12 +340,9 @@ async def log_page_async(
340
340
 
341
341
  await page.wait_for_timeout(100)
342
342
 
343
- if screenshot_dir is None:
344
- screenshot_path = (
345
- Path.home() / ".scitex" / "browser" / "screenshots"
346
- )
347
- else:
348
- screenshot_path = Path(screenshot_dir).expanduser()
343
+ screenshot_path = get_paths().resolve(
344
+ "browser_screenshots", screenshot_dir
345
+ )
349
346
 
350
347
  screenshot_path.mkdir(parents=True, exist_ok=True)
351
348
 
@@ -353,8 +350,7 @@ async def log_page_async(
353
350
  clean_message = "".join(
354
351
  (
355
352
  c
356
- if c.isascii()
357
- and (c.isalnum() or c in (" ", "-", "_", "."))
353
+ if c.isascii() and (c.isalnum() or c in (" ", "-", "_", "."))
358
354
  else "_"
359
355
  )
360
356
  for c in message
@@ -368,9 +364,7 @@ async def log_page_async(
368
364
 
369
365
  timestamp = datetime.now().strftime("%Y%m%d_%H%M%S_%f")[:-3]
370
366
  level_upper = level.upper()
371
- screenshot_filename = (
372
- f"{timestamp}-{level_upper}-{clean_message}.png"
373
- )
367
+ screenshot_filename = f"{timestamp}-{level_upper}-{clean_message}.png"
374
368
  screenshot_full_path = screenshot_path / screenshot_filename
375
369
 
376
370
  await page.screenshot(
@@ -447,9 +441,7 @@ class BrowserLogger:
447
441
  message,
448
442
  duration_ms=duration_ms or self.duration_ms,
449
443
  take_screenshot=(
450
- take_screenshot
451
- if take_screenshot is not None
452
- else self.take_screenshot
444
+ take_screenshot if take_screenshot is not None else self.take_screenshot
453
445
  ),
454
446
  screenshot_dir=screenshot_dir or self.screenshot_dir,
455
447
  verbose=self.verbose,
@@ -601,9 +593,7 @@ browser_logger = BrowserLogger()
601
593
 
602
594
 
603
595
  def main(args):
604
- logger.info(
605
- "Popup and capture utility - use browser_logger.info() in your code"
606
- )
596
+ logger.info("Popup and capture utility - use browser_logger.info() in your code")
607
597
  return 0
608
598
 
609
599
 
@@ -277,7 +277,12 @@ def save_failure_artifacts(
277
277
  Dict with paths to saved artifacts
278
278
  """
279
279
  timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
280
- safe_test_name = test_name.replace("::", "_").replace("[", "_").replace("]", "").replace("/", "_")
280
+ safe_test_name = (
281
+ test_name.replace("::", "_")
282
+ .replace("[", "_")
283
+ .replace("]", "")
284
+ .replace("/", "_")
285
+ )
281
286
 
282
287
  # Create artifacts directory with timestamp
283
288
  artifacts_path = Path(artifacts_dir) / timestamp
@@ -354,7 +359,9 @@ def create_failure_capture_fixture(artifacts_dir: Path | str):
354
359
  yield
355
360
  if hasattr(request.node, "rep_call") and request.node.rep_call.failed:
356
361
  console_logs = collect_console_logs(page)
357
- save_failure_artifacts(page, request.node.nodeid, artifacts_dir, console_logs)
362
+ save_failure_artifacts(
363
+ page, request.node.nodeid, artifacts_dir, console_logs
364
+ )
358
365
 
359
366
  return capture_on_failure
360
367
 
@@ -5,9 +5,8 @@
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./src/scitex/browser/debugging/highlight_element.py"
10
- )
8
+
9
+ __FILE__ = "./src/scitex/browser/debugging/highlight_element.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
 
@@ -41,7 +40,13 @@ from scitex import logging
41
40
  logger = logging.getLogger(__name__)
42
41
 
43
42
  """Functions & Classes"""
44
- async def highlight_element_async(element: Locator, duration_ms: int = 1_000, func_name: str = "highlight_element_async"):
43
+
44
+
45
+ async def highlight_element_async(
46
+ element: Locator,
47
+ duration_ms: int = 1_000,
48
+ func_name: str = "highlight_element_async",
49
+ ):
45
50
  """Highlight element with red overlay rectangle.
46
51
 
47
52
  Args:
@@ -91,7 +96,9 @@ async def highlight_element_async(element: Locator, duration_ms: int = 1_000, fu
91
96
 
92
97
 
93
98
  def main(args):
94
- logger.debug("Element highlighting utility - use highlight_element_async() in your code")
99
+ logger.debug(
100
+ "Element highlighting utility - use highlight_element_async() in your code"
101
+ )
95
102
  return 0
96
103
 
97
104
 
@@ -99,7 +106,9 @@ def parse_args() -> argparse.Namespace:
99
106
  """Parse command line arguments."""
100
107
  import scitex as stx
101
108
 
102
- parser = argparse.ArgumentParser(description="Element highlighting utility for debugging")
109
+ parser = argparse.ArgumentParser(
110
+ description="Element highlighting utility for debugging"
111
+ )
103
112
  args = parser.parse_args()
104
113
  return args
105
114
 
@@ -5,9 +5,8 @@
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./src/scitex/browser/debugging/_show_grid.py"
10
- )
8
+
9
+ __FILE__ = "./src/scitex/browser/debugging/_show_grid.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
 
@@ -39,6 +38,8 @@ from scitex import logging
39
38
  logger = logging.getLogger(__name__)
40
39
 
41
40
  """Functions & Classes"""
41
+
42
+
42
43
  async def show_grid_async(page, func_name: str = "show_grid_async"):
43
44
  from ._browser_logger import browser_logger
44
45
 
@@ -108,9 +109,7 @@ def parse_args() -> argparse.Namespace:
108
109
  """Parse command line arguments."""
109
110
  import scitex as stx
110
111
 
111
- parser = argparse.ArgumentParser(
112
- description="Grid overlay utility for debugging"
113
- )
112
+ parser = argparse.ArgumentParser(description="Grid overlay utility for debugging")
114
113
  args = parser.parse_args()
115
114
  return args
116
115
 
@@ -85,9 +85,9 @@ class SyncBrowserSession:
85
85
  # Get the browser process
86
86
  browser = self.page.context.browser
87
87
  # Browser PID is available via internal _impl
88
- if hasattr(browser, '_impl'):
88
+ if hasattr(browser, "_impl"):
89
89
  impl = browser._impl
90
- if hasattr(impl, '_process'):
90
+ if hasattr(impl, "_process"):
91
91
  self._browser_pid = impl._process.pid
92
92
  except Exception:
93
93
  pass # PID tracking is best-effort
@@ -147,6 +147,7 @@ class SyncBrowserSession:
147
147
 
148
148
  # Give it a moment
149
149
  import time
150
+
150
151
  time.sleep(0.5)
151
152
 
152
153
  # Force kill if still running
@@ -177,7 +178,7 @@ class SyncBrowserSession:
177
178
  text=True,
178
179
  )
179
180
  if result.returncode == 0:
180
- pids = result.stdout.strip().split('\n')
181
+ pids = result.stdout.strip().split("\n")
181
182
  for pid in pids:
182
183
  if pid:
183
184
  try:
@@ -1,6 +1,6 @@
1
1
  #!/usr/bin/env python3
2
2
  # -*- coding: utf-8 -*-
3
- # Timestamp: 2025-12-08
3
+ # Timestamp: 2025-12-09
4
4
  # File: /home/ywatanabe/proj/scitex-code/src/scitex/browser/debugging/_test_monitor.py
5
5
 
6
6
  """
@@ -31,6 +31,8 @@ from datetime import datetime
31
31
  from pathlib import Path
32
32
  from typing import TYPE_CHECKING, Optional
33
33
 
34
+ from scitex.config import get_paths
35
+
34
36
  if TYPE_CHECKING:
35
37
  from playwright.sync_api import Page
36
38
 
@@ -55,13 +57,13 @@ class TestMonitor:
55
57
  Initialize test monitor.
56
58
 
57
59
  Args:
58
- output_dir: Directory for screenshots (default: ~/.scitex/test_monitor)
60
+ output_dir: Directory for screenshots (default: $SCITEX_DIR/test_monitor)
59
61
  interval: Seconds between screenshots (default: 2.0)
60
62
  quality: JPEG quality 1-100 (default: 70)
61
63
  verbose: Print capture messages
62
64
  test_name: Optional test name for session identification
63
65
  """
64
- self.output_dir = Path(output_dir or Path.home() / ".scitex" / "test_monitor")
66
+ self.output_dir = get_paths().resolve("test_monitor", output_dir)
65
67
  self.interval = interval
66
68
  self.quality = quality
67
69
  self.verbose = verbose
@@ -90,7 +92,9 @@ class TestMonitor:
90
92
  # Generate session ID
91
93
  timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
92
94
  name = test_name or self.test_name or "test"
93
- safe_name = name.replace("::", "_").replace("[", "_").replace("]", "").replace("/", "_")
95
+ safe_name = (
96
+ name.replace("::", "_").replace("[", "_").replace("]", "").replace("/", "_")
97
+ )
94
98
  self.session_id = f"{timestamp}_{safe_name}"
95
99
 
96
100
  # Create session directory
@@ -151,11 +155,14 @@ class TestMonitor:
151
155
  """
152
156
  try:
153
157
  from scitex.capture import snap
158
+
154
159
  return snap(message=message, output_dir=str(self.output_dir))
155
160
  except ImportError:
156
161
  return None
157
162
 
158
- def create_gif(self, duration: float = 0.5, output_path: str = None) -> Optional[str]:
163
+ def create_gif(
164
+ self, duration: float = 0.5, output_path: str = None
165
+ ) -> Optional[str]:
159
166
  """
160
167
  Create GIF from captured screenshots.
161
168
 
@@ -260,6 +267,7 @@ def monitor_test(
260
267
  interval: Seconds between screenshots
261
268
  auto_gif: Create GIF on completion
262
269
  """
270
+
263
271
  def decorator(func):
264
272
  def wrapper(*args, **kwargs):
265
273
  monitor = TestMonitor(
@@ -274,6 +282,7 @@ def monitor_test(
274
282
  monitor.stop()
275
283
  if auto_gif:
276
284
  monitor.create_gif()
285
+
277
286
  return wrapper
278
287
 
279
288
  if test_func is not None:
@@ -159,10 +159,7 @@ async def inject_visual_effects_async(page: "AsyncPage") -> None:
159
159
 
160
160
 
161
161
  def show_cursor_at(
162
- page: Union["AsyncPage", "SyncPage"],
163
- x: float,
164
- y: float,
165
- state: str = "normal"
162
+ page: Union["AsyncPage", "SyncPage"], x: float, y: float, state: str = "normal"
166
163
  ) -> None:
167
164
  """Move visual cursor to position (sync version).
168
165
 
@@ -172,7 +169,8 @@ def show_cursor_at(
172
169
  y: Y coordinate
173
170
  state: Cursor state - "normal", "clicking", or "dragging"
174
171
  """
175
- page.evaluate("""
172
+ page.evaluate(
173
+ """
176
174
  ([x, y, state]) => {
177
175
  let cursor = document.getElementById('_scitex_cursor');
178
176
  if (!cursor) {
@@ -193,17 +191,17 @@ def show_cursor_at(
193
191
  cursor.style.boxShadow = '0 0 15px rgba(255, 68, 68, 0.6)';
194
192
  }
195
193
  }
196
- """, [x, y, state])
194
+ """,
195
+ [x, y, state],
196
+ )
197
197
 
198
198
 
199
199
  async def show_cursor_at_async(
200
- page: "AsyncPage",
201
- x: float,
202
- y: float,
203
- state: str = "normal"
200
+ page: "AsyncPage", x: float, y: float, state: str = "normal"
204
201
  ) -> None:
205
202
  """Move visual cursor to position (async version)."""
206
- await page.evaluate("""
203
+ await page.evaluate(
204
+ """
207
205
  ([x, y, state]) => {
208
206
  let cursor = document.getElementById('_scitex_cursor');
209
207
  if (!cursor) {
@@ -224,12 +222,15 @@ async def show_cursor_at_async(
224
222
  cursor.style.boxShadow = '0 0 15px rgba(255, 68, 68, 0.6)';
225
223
  }
226
224
  }
227
- """, [x, y, state])
225
+ """,
226
+ [x, y, state],
227
+ )
228
228
 
229
229
 
230
230
  def show_click_effect(page: Union["AsyncPage", "SyncPage"], x: float, y: float) -> None:
231
231
  """Show click ripple effect at position (sync version)."""
232
- page.evaluate("""
232
+ page.evaluate(
233
+ """
233
234
  ([x, y]) => {
234
235
  const ripple = document.createElement('div');
235
236
  ripple.className = 'scitex-click-ripple';
@@ -244,12 +245,15 @@ def show_click_effect(page: Union["AsyncPage", "SyncPage"], x: float, y: float)
244
245
  setTimeout(() => cursor.classList.remove('clicking'), 150);
245
246
  }
246
247
  }
247
- """, [x, y])
248
+ """,
249
+ [x, y],
250
+ )
248
251
 
249
252
 
250
253
  async def show_click_effect_async(page: "AsyncPage", x: float, y: float) -> None:
251
254
  """Show click ripple effect at position (async version)."""
252
- await page.evaluate("""
255
+ await page.evaluate(
256
+ """
253
257
  ([x, y]) => {
254
258
  const ripple = document.createElement('div');
255
259
  ripple.className = 'scitex-click-ripple';
@@ -264,7 +268,9 @@ async def show_click_effect_async(page: "AsyncPage", x: float, y: float) -> None
264
268
  setTimeout(() => cursor.classList.remove('clicking'), 150);
265
269
  }
266
270
  }
267
- """, [x, y])
271
+ """,
272
+ [x, y],
273
+ )
268
274
 
269
275
 
270
276
  def show_step(
@@ -272,7 +278,7 @@ def show_step(
272
278
  step: int,
273
279
  total: int,
274
280
  message: str,
275
- level: str = "info"
281
+ level: str = "info",
276
282
  ) -> None:
277
283
  """Show numbered step message in browser (sync version).
278
284
 
@@ -291,7 +297,8 @@ def show_step(
291
297
  }
292
298
  color = color_map.get(level, color_map["info"])
293
299
 
294
- page.evaluate("""
300
+ page.evaluate(
301
+ """
295
302
  ([step, total, message, color]) => {
296
303
  let container = document.getElementById('_scitex_step_messages');
297
304
  if (!container) {
@@ -318,16 +325,14 @@ def show_step(
318
325
  while (container.children.length > 5) container.removeChild(container.firstChild);
319
326
  setTimeout(() => { if (popup.parentNode) popup.parentNode.removeChild(popup); }, 8000);
320
327
  }
321
- """, [step, total, message, color])
328
+ """,
329
+ [step, total, message, color],
330
+ )
322
331
  page.wait_for_timeout(200)
323
332
 
324
333
 
325
334
  async def show_step_async(
326
- page: "AsyncPage",
327
- step: int,
328
- total: int,
329
- message: str,
330
- level: str = "info"
335
+ page: "AsyncPage", step: int, total: int, message: str, level: str = "info"
331
336
  ) -> None:
332
337
  """Show numbered step message in browser (async version)."""
333
338
  color_map = {
@@ -338,7 +343,8 @@ async def show_step_async(
338
343
  }
339
344
  color = color_map.get(level, color_map["info"])
340
345
 
341
- await page.evaluate("""
346
+ await page.evaluate(
347
+ """
342
348
  ([step, total, message, color]) => {
343
349
  let container = document.getElementById('_scitex_step_messages');
344
350
  if (!container) {
@@ -365,7 +371,9 @@ async def show_step_async(
365
371
  while (container.children.length > 5) container.removeChild(container.firstChild);
366
372
  setTimeout(() => { if (popup.parentNode) popup.parentNode.removeChild(popup); }, 8000);
367
373
  }
368
- """, [step, total, message, color])
374
+ """,
375
+ [step, total, message, color],
376
+ )
369
377
  await page.wait_for_timeout(200)
370
378
 
371
379
 
@@ -373,7 +381,7 @@ def show_test_result(
373
381
  page: Union["AsyncPage", "SyncPage"],
374
382
  success: bool,
375
383
  message: str = "",
376
- delay_ms: int = 3000
384
+ delay_ms: int = 3000,
377
385
  ) -> None:
378
386
  """Show test result banner (PASS/FAIL) and wait (sync version).
379
387
 
@@ -387,7 +395,8 @@ def show_test_result(
387
395
  css_class = "success" if success else "failure"
388
396
  display_text = f"{status}" + (f": {message}" if message else "")
389
397
 
390
- page.evaluate("""
398
+ page.evaluate(
399
+ """
391
400
  ([displayText, cssClass]) => {
392
401
  // Remove existing banner
393
402
  const existing = document.getElementById('_scitex_result_banner');
@@ -399,22 +408,22 @@ def show_test_result(
399
408
  banner.textContent = displayText;
400
409
  document.body.appendChild(banner);
401
410
  }
402
- """, [display_text, css_class])
411
+ """,
412
+ [display_text, css_class],
413
+ )
403
414
  page.wait_for_timeout(delay_ms)
404
415
 
405
416
 
406
417
  async def show_test_result_async(
407
- page: "AsyncPage",
408
- success: bool,
409
- message: str = "",
410
- delay_ms: int = 3000
418
+ page: "AsyncPage", success: bool, message: str = "", delay_ms: int = 3000
411
419
  ) -> None:
412
420
  """Show test result banner (PASS/FAIL) and wait (async version)."""
413
421
  status = "PASS" if success else "FAIL"
414
422
  css_class = "success" if success else "failure"
415
423
  display_text = f"{status}" + (f": {message}" if message else "")
416
424
 
417
- await page.evaluate("""
425
+ await page.evaluate(
426
+ """
418
427
  ([displayText, cssClass]) => {
419
428
  const existing = document.getElementById('_scitex_result_banner');
420
429
  if (existing) existing.remove();
@@ -425,7 +434,9 @@ async def show_test_result_async(
425
434
  banner.textContent = displayText;
426
435
  document.body.appendChild(banner);
427
436
  }
428
- """, [display_text, css_class])
437
+ """,
438
+ [display_text, css_class],
439
+ )
429
440
  await page.wait_for_timeout(delay_ms)
430
441
 
431
442
 
@@ -5,9 +5,8 @@
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./src/scitex/browser/interaction/click_center.py"
10
- )
8
+
9
+ __FILE__ = "./src/scitex/browser/interaction/click_center.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
 
@@ -36,6 +35,8 @@ from scitex import logging
36
35
  logger = logging.getLogger(__name__)
37
36
 
38
37
  """Functions & Classes"""
38
+
39
+
39
40
  async def click_center_async(
40
41
  page, verbose: bool = False, func_name="click_center_async"
41
42
  ):
@@ -5,9 +5,8 @@
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./src/scitex/browser/interaction/click_with_fallbacks.py"
10
- )
8
+
9
+ __FILE__ = "./src/scitex/browser/interaction/click_with_fallbacks.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
 
@@ -56,9 +55,7 @@ async def click_with_fallbacks_async(
56
55
  if method_name in methods:
57
56
  success = await methods[method_name](page, selector)
58
57
  if success:
59
- logger.debug(
60
- f"Click successful with {method_name}: {selector}"
61
- )
58
+ logger.debug(f"Click successful with {method_name}: {selector}")
62
59
  if verbose:
63
60
  await browser_logger.debug(
64
61
  page,
@@ -138,15 +135,15 @@ def main(args):
138
135
 
139
136
  # Try to click a common element
140
137
  success = await click_with_fallbacks_async(
141
- page, "a", verbose=True # Click first link
138
+ page,
139
+ "a",
140
+ verbose=True, # Click first link
142
141
  )
143
142
 
144
143
  if success:
145
144
  logger.success("Click demonstration completed successfully")
146
145
  else:
147
- logger.warning(
148
- "Click demonstration: no clickable element found"
149
- )
146
+ logger.warning("Click demonstration: no clickable element found")
150
147
 
151
148
  await browser_logger.debug(page, "✓ Demo complete", verbose=True)
152
149