scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +25 -10
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/audio/README.md +52 -0
- scitex/audio/__init__.py +384 -0
- scitex/audio/__main__.py +129 -0
- scitex/audio/_tts.py +334 -0
- scitex/audio/engines/__init__.py +44 -0
- scitex/audio/engines/base.py +275 -0
- scitex/audio/engines/elevenlabs_engine.py +143 -0
- scitex/audio/engines/gtts_engine.py +162 -0
- scitex/audio/engines/pyttsx3_engine.py +131 -0
- scitex/audio/mcp_server.py +757 -0
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dev/plt/__init__.py +272 -0
- scitex/dev/plt/plot_mpl_axhline.py +28 -0
- scitex/dev/plt/plot_mpl_axhspan.py +28 -0
- scitex/dev/plt/plot_mpl_axvline.py +28 -0
- scitex/dev/plt/plot_mpl_axvspan.py +28 -0
- scitex/dev/plt/plot_mpl_bar.py +29 -0
- scitex/dev/plt/plot_mpl_barh.py +29 -0
- scitex/dev/plt/plot_mpl_boxplot.py +28 -0
- scitex/dev/plt/plot_mpl_contour.py +31 -0
- scitex/dev/plt/plot_mpl_contourf.py +31 -0
- scitex/dev/plt/plot_mpl_errorbar.py +30 -0
- scitex/dev/plt/plot_mpl_eventplot.py +28 -0
- scitex/dev/plt/plot_mpl_fill.py +30 -0
- scitex/dev/plt/plot_mpl_fill_between.py +31 -0
- scitex/dev/plt/plot_mpl_hexbin.py +28 -0
- scitex/dev/plt/plot_mpl_hist.py +28 -0
- scitex/dev/plt/plot_mpl_hist2d.py +28 -0
- scitex/dev/plt/plot_mpl_imshow.py +29 -0
- scitex/dev/plt/plot_mpl_pcolormesh.py +31 -0
- scitex/dev/plt/plot_mpl_pie.py +29 -0
- scitex/dev/plt/plot_mpl_plot.py +29 -0
- scitex/dev/plt/plot_mpl_quiver.py +31 -0
- scitex/dev/plt/plot_mpl_scatter.py +28 -0
- scitex/dev/plt/plot_mpl_stackplot.py +31 -0
- scitex/dev/plt/plot_mpl_stem.py +29 -0
- scitex/dev/plt/plot_mpl_step.py +29 -0
- scitex/dev/plt/plot_mpl_violinplot.py +28 -0
- scitex/dev/plt/plot_sns_barplot.py +29 -0
- scitex/dev/plt/plot_sns_boxplot.py +29 -0
- scitex/dev/plt/plot_sns_heatmap.py +28 -0
- scitex/dev/plt/plot_sns_histplot.py +29 -0
- scitex/dev/plt/plot_sns_kdeplot.py +29 -0
- scitex/dev/plt/plot_sns_lineplot.py +31 -0
- scitex/dev/plt/plot_sns_scatterplot.py +29 -0
- scitex/dev/plt/plot_sns_stripplot.py +29 -0
- scitex/dev/plt/plot_sns_swarmplot.py +29 -0
- scitex/dev/plt/plot_sns_violinplot.py +29 -0
- scitex/dev/plt/plot_stx_bar.py +29 -0
- scitex/dev/plt/plot_stx_barh.py +29 -0
- scitex/dev/plt/plot_stx_box.py +28 -0
- scitex/dev/plt/plot_stx_boxplot.py +28 -0
- scitex/dev/plt/plot_stx_conf_mat.py +28 -0
- scitex/dev/plt/plot_stx_contour.py +31 -0
- scitex/dev/plt/plot_stx_ecdf.py +28 -0
- scitex/dev/plt/plot_stx_errorbar.py +30 -0
- scitex/dev/plt/plot_stx_fill_between.py +31 -0
- scitex/dev/plt/plot_stx_fillv.py +28 -0
- scitex/dev/plt/plot_stx_heatmap.py +28 -0
- scitex/dev/plt/plot_stx_image.py +28 -0
- scitex/dev/plt/plot_stx_imshow.py +28 -0
- scitex/dev/plt/plot_stx_joyplot.py +28 -0
- scitex/dev/plt/plot_stx_kde.py +28 -0
- scitex/dev/plt/plot_stx_line.py +28 -0
- scitex/dev/plt/plot_stx_mean_ci.py +28 -0
- scitex/dev/plt/plot_stx_mean_std.py +28 -0
- scitex/dev/plt/plot_stx_median_iqr.py +28 -0
- scitex/dev/plt/plot_stx_raster.py +28 -0
- scitex/dev/plt/plot_stx_rectangle.py +28 -0
- scitex/dev/plt/plot_stx_scatter.py +29 -0
- scitex/dev/plt/plot_stx_shaded_line.py +29 -0
- scitex/dev/plt/plot_stx_violin.py +28 -0
- scitex/dev/plt/plot_stx_violinplot.py +28 -0
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/fig/__init__.py +352 -0
- scitex/{vis → fig}/backend/__init__.py +3 -3
- scitex/{vis/backend/export.py → fig/backend/_export.py} +1 -1
- scitex/{vis/backend/parser.py → fig/backend/_parser.py} +2 -4
- scitex/{vis/backend/render.py → fig/backend/_render.py} +1 -1
- scitex/{vis → fig}/canvas.py +16 -4
- scitex/{vis → fig}/editor/__init__.py +0 -0
- scitex/{vis → fig}/editor/_dearpygui_editor.py +450 -304
- scitex/fig/editor/_defaults.py +300 -0
- scitex/fig/editor/_edit.py +751 -0
- scitex/{vis → fig}/editor/_flask_editor.py +8 -8
- scitex/{vis → fig}/editor/_mpl_editor.py +63 -48
- scitex/{vis → fig}/editor/_qt_editor.py +391 -160
- scitex/{vis → fig}/editor/_tkinter_editor.py +146 -89
- scitex/fig/editor/flask_editor/__init__.py +21 -0
- scitex/fig/editor/flask_editor/_bbox.py +1276 -0
- scitex/fig/editor/flask_editor/_core.py +624 -0
- scitex/fig/editor/flask_editor/_plotter.py +601 -0
- scitex/fig/editor/flask_editor/_renderer.py +739 -0
- scitex/{vis/editor/flask_editor/utils.py → fig/editor/flask_editor/_utils.py} +13 -14
- scitex/{vis → fig}/editor/flask_editor/templates/__init__.py +6 -6
- scitex/fig/editor/flask_editor/templates/_html.py +834 -0
- scitex/fig/editor/flask_editor/templates/_scripts.py +3136 -0
- scitex/fig/editor/flask_editor/templates/_styles.py +1346 -0
- scitex/{vis → fig}/io/__init__.py +18 -6
- scitex/fig/io/_bundle.py +973 -0
- scitex/{vis/io/canvas.py → fig/io/_canvas.py} +9 -5
- scitex/{vis/io/data.py → fig/io/_data.py} +14 -10
- scitex/{vis/io/directory.py → fig/io/_directory.py} +7 -4
- scitex/{vis/io/export.py → fig/io/_export.py} +16 -13
- scitex/{vis/io/load.py → fig/io/_load.py} +2 -2
- scitex/{vis/io/panel.py → fig/io/_panel.py} +22 -14
- scitex/{vis/io/save.py → fig/io/_save.py} +1 -1
- scitex/{vis → fig}/model/__init__.py +8 -8
- scitex/{vis/model/annotations.py → fig/model/_annotations.py} +3 -5
- scitex/{vis/model/axes.py → fig/model/_axes.py} +2 -2
- scitex/{vis/model/figure.py → fig/model/_figure.py} +1 -1
- scitex/{vis/model/guides.py → fig/model/_guides.py} +2 -2
- scitex/{vis/model/plot.py → fig/model/_plot.py} +3 -5
- scitex/{vis/model/plot_types.py → fig/model/_plot_types.py} +0 -0
- scitex/{vis/model/styles.py → fig/model/_styles.py} +1 -1
- scitex/{vis → fig}/utils/__init__.py +3 -3
- scitex/{vis/utils/defaults.py → fig/utils/_defaults.py} +1 -2
- scitex/{vis/utils/validate.py → fig/utils/_validate.py} +3 -9
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +12 -27
- scitex/io/_bundle.py +434 -0
- scitex/io/_flush.py +5 -2
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +104 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +11 -14
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +6 -11
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +7 -4
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
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- scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
- scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
- scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
- scitex/scholar/url_finder/translators/individual/plos.py +9 -12
- scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
- scitex/scholar/url_finder/translators/individual/primo.py +3 -1
- scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
- scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
- scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
- scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
- scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
- scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
- scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
- scitex/scholar/url_finder/translators/individual/sora.py +3 -1
- scitex/scholar/url_finder/translators/individual/springer.py +15 -11
- scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
- scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
- scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
- scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
- scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
- scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
- scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
- scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
- scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
- scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
- scitex/scholar/utils/text/_TextNormalizer.py +249 -176
- scitex/scholar/utils/validation/DOIValidator.py +31 -28
- scitex/scholar/utils/validation/__init__.py +0 -0
- scitex/scholar/utils/validation/validate_library_dois.py +61 -57
- scitex/scholar/zotero/__init__.py +1 -1
- scitex/security/cli.py +7 -20
- scitex/security/github.py +45 -32
- scitex/session/__init__.py +8 -9
- scitex/session/_decorator.py +49 -42
- scitex/session/_lifecycle.py +39 -39
- scitex/session/_manager.py +24 -20
- scitex/sh/__init__.py +4 -3
- scitex/sh/_execute.py +10 -7
- scitex/sh/_security.py +3 -3
- scitex/sh/_types.py +2 -3
- scitex/stats/__init__.py +174 -6
- scitex/stats/_schema.py +42 -569
- scitex/stats/auto/__init__.py +188 -0
- scitex/stats/auto/_context.py +331 -0
- scitex/stats/auto/_formatting.py +679 -0
- scitex/stats/auto/_rules.py +901 -0
- scitex/stats/auto/_selector.py +554 -0
- scitex/stats/auto/_styles.py +721 -0
- scitex/stats/correct/__init__.py +4 -4
- scitex/stats/correct/_correct_bonferroni.py +43 -34
- scitex/stats/correct/_correct_fdr.py +14 -40
- scitex/stats/correct/_correct_fdr_.py +39 -46
- scitex/stats/correct/_correct_holm.py +14 -32
- scitex/stats/correct/_correct_sidak.py +36 -21
- scitex/stats/descriptive/_circular.py +20 -21
- scitex/stats/descriptive/_describe.py +19 -5
- scitex/stats/descriptive/_nan.py +5 -7
- scitex/stats/descriptive/_real.py +4 -3
- scitex/stats/effect_sizes/__init__.py +10 -11
- scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
- scitex/stats/effect_sizes/_cohens_d.py +30 -31
- scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
- scitex/stats/effect_sizes/_eta_squared.py +23 -27
- scitex/stats/effect_sizes/_prob_superiority.py +18 -21
- scitex/stats/io/__init__.py +29 -0
- scitex/stats/io/_bundle.py +156 -0
- scitex/stats/posthoc/__init__.py +3 -3
- scitex/stats/posthoc/_dunnett.py +75 -55
- scitex/stats/posthoc/_games_howell.py +61 -43
- scitex/stats/posthoc/_tukey_hsd.py +42 -34
- scitex/stats/power/__init__.py +2 -2
- scitex/stats/power/_power.py +56 -56
- scitex/stats/tests/__init__.py +1 -1
- scitex/stats/tests/correlation/__init__.py +1 -1
- scitex/stats/tests/correlation/_test_pearson.py +28 -38
- scitex/stats/utils/__init__.py +14 -17
- scitex/stats/utils/_effect_size.py +85 -78
- scitex/stats/utils/_formatters.py +49 -43
- scitex/stats/utils/_normalizers.py +7 -14
- scitex/stats/utils/_power.py +56 -56
- scitex/str/__init__.py +1 -0
- scitex/str/_clean_path.py +3 -3
- scitex/str/_factor_out_digits.py +86 -58
- scitex/str/_format_plot_text.py +180 -111
- scitex/str/_latex.py +19 -19
- scitex/str/_latex_fallback.py +9 -10
- scitex/str/_parse.py +3 -6
- scitex/str/_print_debug.py +13 -13
- scitex/str/_printc.py +2 -0
- scitex/str/_search.py +3 -3
- scitex/template/.legacy/_clone_project.py +9 -13
- scitex/template/__init__.py +10 -2
- scitex/template/_clone_project.py +7 -2
- scitex/template/_copy.py +1 -0
- scitex/template/_customize.py +3 -6
- scitex/template/_git_strategy.py +2 -3
- scitex/template/_rename.py +1 -0
- scitex/template/clone_pip_project.py +6 -7
- scitex/template/clone_research.py +7 -10
- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/__init__.py +4 -0
- scitex/tex/_export.py +890 -0
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/METADATA +14 -10
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/RECORD +1149 -985
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/io/memo.md +0 -2827
- scitex/plt/_subplots/TODO.md +0 -53
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +0 -537
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +0 -1499
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +0 -431
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/__init__.py +0 -177
- scitex/vis/editor/_defaults.py +0 -244
- scitex/vis/editor/_edit.py +0 -378
- scitex/vis/editor/flask_editor/__init__.py +0 -21
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/core.py +0 -152
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/html.py +0 -295
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- scitex/vis/editor/flask_editor/templates/styles.py +0 -549
- /scitex/{vis → fig}/README.md +0 -0
- /scitex/{vis → fig}/docs/CANVAS_ARCHITECTURE.md +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/licenses/LICENSE +0 -0
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async def _handle_wayf_selection_async(self, page: Page) -> bool:
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@@ -348,15 +353,16 @@ class ShibbolethAuthenticator(BaseAuthenticator):
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wayf_indicators = ["wayf", "discovery", "ds.", "where are you from"]
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current_url = page.url.lower()
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page_content = await page.content()
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-
is_wayf = any(ind in current_url for ind in wayf_indicators) or
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+
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is_wayf = any(ind in current_url for ind in wayf_indicators) or any(
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ind in page_content.lower() for ind in wayf_indicators
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)
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+
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if not is_wayf:
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return False
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-
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+
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logger.info(f"{self.name}: Detected WAYF/Discovery Service page")
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+
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# Try to find institution selector
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if self.institution:
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# Search for institution in dropdown/list
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@@ -365,43 +371,48 @@ class ShibbolethAuthenticator(BaseAuthenticator):
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f"a:has-text('{self.institution}')",
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f"li:has-text('{self.institution}')",
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]
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for selector in selectors:
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element = await page.query_selector(selector)
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if element:
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# If it's an option, select it
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if await element.evaluate("el => el.tagName") == "OPTION":
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select = await element.evaluate_handle("el => el.parentElement")
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-
await select.select_option(
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await select.select_option(
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value=await element.get_attribute("value")
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)
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# Find and click submit button
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-
submit = await page.query_selector(
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submit = await page.query_selector(
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"button[type='submit'], input[type='submit']"
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)
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if submit:
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await submit.click()
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else:
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# Direct click
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await element.click()
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await page.wait_for_load_state("networkidle")
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return True
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# If automated selection fails, might need manual intervention
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if self.debug_mode:
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logger.info(f"{self.name}: Please select your institution manually")
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await asyncio.sleep(30) # Give time for manual selection
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return False
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async def _handle_idp_login_async(self, page: Page) -> None:
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"""Handle login at the Identity Provider."""
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logger.info(f"{self.name}: Handling IdP login page")
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-
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+
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# Get credentials
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if not self.username:
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self.username = input("Shibboleth username: ")
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if not self.password:
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import getpass
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+
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self.password = getpass.getpass("Shibboleth password: ")
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-
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+
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# Try each username field pattern
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username_filled = False
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for selector in self.idp_patterns["username_field"]:
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@@ -410,10 +421,10 @@ class ShibbolethAuthenticator(BaseAuthenticator):
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await field.fill(self.username)
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username_filled = True
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break
|
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-
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+
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if not username_filled:
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raise ShibbolethError("Could not find username field")
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-
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+
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# Try each password field pattern
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password_filled = False
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for selector in self.idp_patterns["password_field"]:
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@@ -422,24 +433,24 @@ class ShibbolethAuthenticator(BaseAuthenticator):
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await field.fill(self.password)
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password_filled = True
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break
|
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-
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+
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if not password_filled:
|
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raise ShibbolethError("Could not find password field")
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428
|
-
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+
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|
# Try each submit button pattern
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for selector in self.idp_patterns["submit_button"]:
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button = await page.query_selector(selector)
|
|
432
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|
if button and await button.is_visible():
|
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await button.click()
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break
|
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435
|
-
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+
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|
# Wait for authentication to complete
|
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|
await page.wait_for_load_state("networkidle")
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438
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439
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async def _extract_saml_attributes_async(self, page: Page) -> Dict[str, Any]:
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440
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"""Try to extract SAML attributes from the page."""
|
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441
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|
attributes = {}
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442
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-
|
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453
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+
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try:
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444
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|
# Some SPs expose attributes in meta tags
|
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445
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meta_tags = await page.query_selector_all("meta[name^='shib-']")
|
|
@@ -449,20 +460,20 @@ class ShibbolethAuthenticator(BaseAuthenticator):
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|
|
449
460
|
if name and content:
|
|
450
461
|
attr_name = name.replace("shib-", "")
|
|
451
462
|
attributes[attr_name] = content
|
|
452
|
-
|
|
463
|
+
|
|
453
464
|
# Check for common attribute patterns in page
|
|
454
465
|
if not attributes:
|
|
455
466
|
# Try to find email/eppn
|
|
456
|
-
email_pattern = r
|
|
467
|
+
email_pattern = r"[\w._%+-]+@[\w.-]+\.[a-zA-Z]{2,}"
|
|
457
468
|
page_text = await page.text_content()
|
|
458
469
|
if page_text:
|
|
459
470
|
emails = re.findall(email_pattern, page_text)
|
|
460
471
|
if emails and self.username in emails[0]:
|
|
461
472
|
attributes["eppn"] = emails[0]
|
|
462
|
-
|
|
473
|
+
|
|
463
474
|
except Exception as e:
|
|
464
475
|
logger.debug(f"Could not extract SAML attributes: {e}")
|
|
465
|
-
|
|
476
|
+
|
|
466
477
|
return attributes
|
|
467
478
|
|
|
468
479
|
async def is_authenticate_async(self, verify_live: bool = False) -> bool:
|
|
@@ -478,48 +489,48 @@ class ShibbolethAuthenticator(BaseAuthenticator):
|
|
|
478
489
|
# Check if we have session data
|
|
479
490
|
if not self._cookies or not self._session_expiry:
|
|
480
491
|
return False
|
|
481
|
-
|
|
492
|
+
|
|
482
493
|
# Check if session is expired
|
|
483
494
|
if datetime.now() > self._session_expiry:
|
|
484
495
|
logger.info(f"{self.name}: Shibboleth session expired")
|
|
485
496
|
return False
|
|
486
|
-
|
|
497
|
+
|
|
487
498
|
# If requested, verify session is still valid
|
|
488
499
|
if verify_live:
|
|
489
500
|
try:
|
|
490
501
|
async with async_playwright() as p:
|
|
491
502
|
browser = await p.chromium.launch(headless=True)
|
|
492
503
|
context = await browser.new_context()
|
|
493
|
-
|
|
504
|
+
|
|
494
505
|
# Add cookies
|
|
495
506
|
await context.add_cookies(self._full_cookies)
|
|
496
|
-
|
|
507
|
+
|
|
497
508
|
page = await context.new_page()
|
|
498
|
-
|
|
509
|
+
|
|
499
510
|
# Try to access a protected resource
|
|
500
511
|
test_url = "https://www.nature.com/nature"
|
|
501
512
|
response = await page.goto(test_url, wait_until="networkidle")
|
|
502
|
-
|
|
513
|
+
|
|
503
514
|
# Check if we're redirected to login
|
|
504
515
|
is_valid = not any(
|
|
505
|
-
ind in page.url.lower()
|
|
516
|
+
ind in page.url.lower()
|
|
506
517
|
for ind in ["login", "wayf", "idp", "shibboleth"]
|
|
507
518
|
)
|
|
508
|
-
|
|
519
|
+
|
|
509
520
|
await browser.close()
|
|
510
|
-
|
|
521
|
+
|
|
511
522
|
if not is_valid:
|
|
512
523
|
logger.info(f"{self.name}: Shibboleth session no longer valid")
|
|
513
524
|
self._cookies = {}
|
|
514
525
|
self._full_cookies = []
|
|
515
526
|
self._session_expiry = None
|
|
516
|
-
|
|
527
|
+
|
|
517
528
|
return is_valid
|
|
518
|
-
|
|
529
|
+
|
|
519
530
|
except Exception as e:
|
|
520
531
|
logger.warn(f"Failed to verify session: {e}")
|
|
521
532
|
return False
|
|
522
|
-
|
|
533
|
+
|
|
523
534
|
return True
|
|
524
535
|
|
|
525
536
|
async def get_auth_headers_async(self) -> Dict[str, str]:
|
|
@@ -561,17 +572,17 @@ class ShibbolethAuthenticator(BaseAuthenticator):
|
|
|
561
572
|
self._full_cookies = []
|
|
562
573
|
self._session_expiry = None
|
|
563
574
|
self._saml_attributes = {}
|
|
564
|
-
|
|
575
|
+
|
|
565
576
|
# Remove session file
|
|
566
577
|
if self.session_file.exists():
|
|
567
578
|
self.session_file.unlink()
|
|
568
|
-
|
|
579
|
+
|
|
569
580
|
logger.info(f"{self.name}: Logged out from Shibboleth")
|
|
570
581
|
|
|
571
582
|
async def get_session_info_async(self) -> Dict[str, Any]:
|
|
572
583
|
"""Get information about current session."""
|
|
573
584
|
is_authenticate_async = await self.is_authenticate_async()
|
|
574
|
-
|
|
585
|
+
|
|
575
586
|
return {
|
|
576
587
|
"authenticate_async": is_authenticate_async,
|
|
577
588
|
"provider": "Shibboleth",
|
|
@@ -580,7 +591,9 @@ class ShibbolethAuthenticator(BaseAuthenticator):
|
|
|
580
591
|
"idp_url": self.idp_url,
|
|
581
592
|
"entity_id": self.entity_id,
|
|
582
593
|
"saml_attributes": self._saml_attributes,
|
|
583
|
-
"session_expiry": self._session_expiry.isoformat()
|
|
594
|
+
"session_expiry": self._session_expiry.isoformat()
|
|
595
|
+
if self._session_expiry
|
|
596
|
+
else None,
|
|
584
597
|
"cookies_count": len(self._cookies),
|
|
585
598
|
}
|
|
586
599
|
|
|
@@ -671,16 +684,17 @@ class ShibbolethAuthenticator(BaseAuthenticator):
|
|
|
671
684
|
p = await async_playwright().start()
|
|
672
685
|
browser = await p.chromium.launch(
|
|
673
686
|
headless=not self.debug_mode,
|
|
674
|
-
args=[
|
|
687
|
+
args=["--disable-blink-features=AutomationControlled"],
|
|
675
688
|
)
|
|
676
|
-
|
|
689
|
+
|
|
677
690
|
context = await browser.new_context(
|
|
678
|
-
user_agent=
|
|
691
|
+
user_agent="Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36"
|
|
679
692
|
)
|
|
680
|
-
|
|
693
|
+
|
|
681
694
|
# Add authentication cookies
|
|
682
695
|
await context.add_cookies(self._full_cookies)
|
|
683
|
-
|
|
696
|
+
|
|
684
697
|
return browser, context
|
|
685
698
|
|
|
686
|
-
|
|
699
|
+
|
|
700
|
+
# EOF
|
|
@@ -5,9 +5,8 @@
|
|
|
5
5
|
# ----------------------------------------
|
|
6
6
|
from __future__ import annotations
|
|
7
7
|
import os
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
)
|
|
8
|
+
|
|
9
|
+
__FILE__ = "./src/scitex/scholar/auth/utils/AuthCacheManager.py"
|
|
11
10
|
__DIR__ = os.path.dirname(__FILE__)
|
|
12
11
|
# ----------------------------------------
|
|
13
12
|
|
|
@@ -61,13 +60,13 @@ class AuthCacheManager:
|
|
|
61
60
|
os.chmod(self.cache_dir, 0o700)
|
|
62
61
|
except OSError:
|
|
63
62
|
# Permission denied in WSL or other systems where chmod may not work
|
|
64
|
-
logger.debug(
|
|
63
|
+
logger.debug(
|
|
64
|
+
f"{self.name}: Could not set directory permissions: {self.cache_dir}"
|
|
65
|
+
)
|
|
65
66
|
|
|
66
67
|
self.email = email
|
|
67
68
|
|
|
68
|
-
async def save_session_async(
|
|
69
|
-
self, session_manager: SessionManager
|
|
70
|
-
) -> bool:
|
|
69
|
+
async def save_session_async(self, session_manager: SessionManager) -> bool:
|
|
71
70
|
"""Save session data to cache file."""
|
|
72
71
|
try:
|
|
73
72
|
cache_data = self._create_cache_data(session_manager)
|
|
@@ -77,23 +76,17 @@ class AuthCacheManager:
|
|
|
77
76
|
|
|
78
77
|
# Set secure permissions
|
|
79
78
|
os.chmod(self.cache_json, 0o600)
|
|
80
|
-
logger.info(
|
|
81
|
-
f"{self.name}: Session saved to: {self.cache_json}"
|
|
82
|
-
)
|
|
79
|
+
logger.info(f"{self.name}: Session saved to: {self.cache_json}")
|
|
83
80
|
return True
|
|
84
81
|
|
|
85
82
|
except Exception as e:
|
|
86
83
|
logger.error(f"{self.name}: Failed to save session cache: {e}")
|
|
87
84
|
return False
|
|
88
85
|
|
|
89
|
-
async def load_session_async(
|
|
90
|
-
self, session_manager: SessionManager
|
|
91
|
-
) -> bool:
|
|
86
|
+
async def load_session_async(self, session_manager: SessionManager) -> bool:
|
|
92
87
|
"""Load session data from cache file."""
|
|
93
88
|
if not Path(self.cache_json).exists():
|
|
94
|
-
logger.debug(
|
|
95
|
-
f"{self.name}: No session cache found at {self.cache_json}"
|
|
96
|
-
)
|
|
89
|
+
logger.debug(f"{self.name}: No session cache found at {self.cache_json}")
|
|
97
90
|
return False
|
|
98
91
|
|
|
99
92
|
try:
|
|
@@ -121,9 +114,7 @@ class AuthCacheManager:
|
|
|
121
114
|
try:
|
|
122
115
|
if self.cache_json.exists():
|
|
123
116
|
self.cache_json.unlink()
|
|
124
|
-
logger.info(
|
|
125
|
-
f"{self.name}: Cleared cache file: {self.cache_json}"
|
|
126
|
-
)
|
|
117
|
+
logger.info(f"{self.name}: Cleared cache file: {self.cache_json}")
|
|
127
118
|
return True
|
|
128
119
|
except Exception as e:
|
|
129
120
|
logger.error(f"{self.name}: Failed to clear cache: {e}")
|
|
@@ -137,9 +128,7 @@ class AuthCacheManager:
|
|
|
137
128
|
"""Get lock file path."""
|
|
138
129
|
return self.cache_json_lock
|
|
139
130
|
|
|
140
|
-
def _create_cache_data(
|
|
141
|
-
self, session_manager: SessionManager
|
|
142
|
-
) -> Dict[str, Any]:
|
|
131
|
+
def _create_cache_data(self, session_manager: SessionManager) -> Dict[str, Any]:
|
|
143
132
|
"""Create cache data dictionary from session manager."""
|
|
144
133
|
expiry = session_manager.get_session_async_expiry()
|
|
145
134
|
return {
|
|
@@ -193,4 +182,5 @@ class AuthCacheManager:
|
|
|
193
182
|
|
|
194
183
|
session_manager.set_session_data(cookies, full_cookies, expiry)
|
|
195
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__FILE__ = "./src/scitex/scholar/auth/library/_SessionManager.py"
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System: SciTeX Scholar Module
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Institution: {institution}
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Status: Awaiting 2FA approval
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Timeout: {kwargs.get(
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Timeout: {kwargs.get("timeout", "Unknown")} seconds
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This is an automated notification from the SciTeX Scholar authentication system.
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""".strip()
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priority = "high"
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subject =
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f"SciTeX Scholar: Authentication Successful - {institution}"
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subject = f"SciTeX Scholar: Authentication Successful - {institution}"
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message = f"""
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{institution} SSO Authentication Complete
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- Institution: {institution}
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- Session expires: {kwargs.get(
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- Cookies saved: {kwargs.get(
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- Session expires: {kwargs.get("expires_at", "Unknown")}
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- Cookies saved: {kwargs.get("cookie_count", "Unknown")}
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System: SciTeX Scholar Module
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Status: Authenticated
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@@ -323,7 +316,7 @@ Authentication was not completed successfully.
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- Error: {kwargs.get(
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- Error: {kwargs.get("error", "Unknown error")}
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- Retry available: Yes
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System: SciTeX Scholar Module
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@@ -342,8 +335,8 @@ Your authentication session has expired and will need to be renewed.
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Details:
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- Institution: {institution}
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|
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- Expired at: {kwargs.get(
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|
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- Auto-renewal: {kwargs.get(
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|
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- Expired at: {kwargs.get("expired_at", "Unknown")}
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|
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- Auto-renewal: {kwargs.get("auto_renewal", "Disabled")}
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|
Status: Session expired
|
|
@@ -358,7 +351,7 @@ Authentication will be required for the next access.
|
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|
message = f"""
|
|
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|
{institution} SSO Notification
|
|
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353
|
|
|
361
|
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Event: {event_type.replace(
|
|
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|
+
Event: {event_type.replace("_", " ").title()}
|
|
362
355
|
Institution: {institution}
|
|
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|
Context: {kwargs}
|
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|
|
|
@@ -370,4 +363,5 @@ This is an automated notification from the SciTeX Scholar authentication system.
|
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|
|
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|
return subject, message, priority
|
|
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|
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|
+
|
|
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|
# EOF
|