scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1179) hide show
  1. scitex/__init__.py +25 -10
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/audio/README.md +52 -0
  66. scitex/audio/__init__.py +384 -0
  67. scitex/audio/__main__.py +129 -0
  68. scitex/audio/_tts.py +334 -0
  69. scitex/audio/engines/__init__.py +44 -0
  70. scitex/audio/engines/base.py +275 -0
  71. scitex/audio/engines/elevenlabs_engine.py +143 -0
  72. scitex/audio/engines/gtts_engine.py +162 -0
  73. scitex/audio/engines/pyttsx3_engine.py +131 -0
  74. scitex/audio/mcp_server.py +757 -0
  75. scitex/benchmark/__init__.py +15 -25
  76. scitex/benchmark/benchmark.py +124 -117
  77. scitex/benchmark/monitor.py +117 -107
  78. scitex/benchmark/profiler.py +61 -58
  79. scitex/bridge/__init__.py +110 -0
  80. scitex/bridge/_helpers.py +149 -0
  81. scitex/bridge/_plt_vis.py +529 -0
  82. scitex/bridge/_protocol.py +283 -0
  83. scitex/bridge/_stats_plt.py +261 -0
  84. scitex/bridge/_stats_vis.py +265 -0
  85. scitex/browser/__init__.py +0 -2
  86. scitex/browser/auth/__init__.py +0 -0
  87. scitex/browser/auth/google.py +16 -11
  88. scitex/browser/automation/CookieHandler.py +2 -3
  89. scitex/browser/collaboration/__init__.py +3 -0
  90. scitex/browser/collaboration/auth_helpers.py +3 -1
  91. scitex/browser/collaboration/collaborative_agent.py +2 -0
  92. scitex/browser/collaboration/interactive_panel.py +2 -2
  93. scitex/browser/collaboration/shared_session.py +20 -11
  94. scitex/browser/collaboration/standard_interactions.py +1 -0
  95. scitex/browser/core/BrowserMixin.py +12 -30
  96. scitex/browser/core/ChromeProfileManager.py +9 -24
  97. scitex/browser/debugging/_browser_logger.py +15 -25
  98. scitex/browser/debugging/_failure_capture.py +9 -2
  99. scitex/browser/debugging/_highlight_element.py +15 -6
  100. scitex/browser/debugging/_show_grid.py +5 -6
  101. scitex/browser/debugging/_sync_session.py +4 -3
  102. scitex/browser/debugging/_test_monitor.py +14 -5
  103. scitex/browser/debugging/_visual_cursor.py +46 -35
  104. scitex/browser/interaction/click_center.py +4 -3
  105. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  106. scitex/browser/interaction/close_popups.py +79 -66
  107. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  108. scitex/browser/pdf/__init__.py +3 -1
  109. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  110. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  111. scitex/browser/remote/CaptchaHandler.py +109 -96
  112. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  113. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  114. scitex/browser/stealth/HumanBehavior.py +4 -9
  115. scitex/browser/stealth/StealthManager.py +11 -26
  116. scitex/capture/__init__.py +17 -17
  117. scitex/capture/__main__.py +2 -3
  118. scitex/capture/capture.py +23 -51
  119. scitex/capture/cli.py +14 -39
  120. scitex/capture/gif.py +5 -9
  121. scitex/capture/mcp_server.py +7 -20
  122. scitex/capture/session.py +4 -3
  123. scitex/capture/utils.py +18 -53
  124. scitex/cli/__init__.py +1 -1
  125. scitex/cli/cloud.py +158 -116
  126. scitex/cli/config.py +224 -0
  127. scitex/cli/main.py +41 -40
  128. scitex/cli/scholar.py +60 -27
  129. scitex/cli/security.py +14 -20
  130. scitex/cli/web.py +87 -90
  131. scitex/cli/writer.py +51 -45
  132. scitex/cloud/__init__.py +14 -11
  133. scitex/cloud/_matplotlib_hook.py +6 -6
  134. scitex/config/README.md +313 -0
  135. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  136. scitex/config/_ScitexConfig.py +319 -0
  137. scitex/config/__init__.py +41 -9
  138. scitex/config/_paths.py +325 -0
  139. scitex/config/default.yaml +81 -0
  140. scitex/context/_suppress_output.py +2 -3
  141. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  142. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  143. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  144. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  145. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  146. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  147. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  148. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  149. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  150. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  151. scitex/db/_BaseMixins/__init__.py +1 -1
  152. scitex/db/__init__.py +9 -1
  153. scitex/db/__main__.py +8 -21
  154. scitex/db/_check_health.py +15 -31
  155. scitex/db/_delete_duplicates.py +7 -4
  156. scitex/db/_inspect.py +22 -38
  157. scitex/db/_inspect_optimized.py +89 -85
  158. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  159. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  160. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  161. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  162. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  163. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  164. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  165. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  166. scitex/db/_postgresql/__init__.py +1 -1
  167. scitex/db/_sqlite3/_SQLite3.py +2 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  169. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  170. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  171. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  172. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  173. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  174. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  175. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  176. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  177. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  178. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  179. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  180. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  181. scitex/db/_sqlite3/__init__.py +1 -1
  182. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  183. scitex/decorators/__init__.py +29 -4
  184. scitex/decorators/_auto_order.py +43 -43
  185. scitex/decorators/_batch_fn.py +12 -6
  186. scitex/decorators/_cache_disk.py +8 -9
  187. scitex/decorators/_cache_disk_async.py +8 -7
  188. scitex/decorators/_combined.py +19 -13
  189. scitex/decorators/_converters.py +16 -3
  190. scitex/decorators/_deprecated.py +32 -22
  191. scitex/decorators/_numpy_fn.py +18 -4
  192. scitex/decorators/_pandas_fn.py +17 -5
  193. scitex/decorators/_signal_fn.py +17 -3
  194. scitex/decorators/_torch_fn.py +32 -15
  195. scitex/decorators/_xarray_fn.py +23 -9
  196. scitex/dev/_analyze_code_flow.py +0 -2
  197. scitex/dev/plt/__init__.py +272 -0
  198. scitex/dev/plt/plot_mpl_axhline.py +28 -0
  199. scitex/dev/plt/plot_mpl_axhspan.py +28 -0
  200. scitex/dev/plt/plot_mpl_axvline.py +28 -0
  201. scitex/dev/plt/plot_mpl_axvspan.py +28 -0
  202. scitex/dev/plt/plot_mpl_bar.py +29 -0
  203. scitex/dev/plt/plot_mpl_barh.py +29 -0
  204. scitex/dev/plt/plot_mpl_boxplot.py +28 -0
  205. scitex/dev/plt/plot_mpl_contour.py +31 -0
  206. scitex/dev/plt/plot_mpl_contourf.py +31 -0
  207. scitex/dev/plt/plot_mpl_errorbar.py +30 -0
  208. scitex/dev/plt/plot_mpl_eventplot.py +28 -0
  209. scitex/dev/plt/plot_mpl_fill.py +30 -0
  210. scitex/dev/plt/plot_mpl_fill_between.py +31 -0
  211. scitex/dev/plt/plot_mpl_hexbin.py +28 -0
  212. scitex/dev/plt/plot_mpl_hist.py +28 -0
  213. scitex/dev/plt/plot_mpl_hist2d.py +28 -0
  214. scitex/dev/plt/plot_mpl_imshow.py +29 -0
  215. scitex/dev/plt/plot_mpl_pcolormesh.py +31 -0
  216. scitex/dev/plt/plot_mpl_pie.py +29 -0
  217. scitex/dev/plt/plot_mpl_plot.py +29 -0
  218. scitex/dev/plt/plot_mpl_quiver.py +31 -0
  219. scitex/dev/plt/plot_mpl_scatter.py +28 -0
  220. scitex/dev/plt/plot_mpl_stackplot.py +31 -0
  221. scitex/dev/plt/plot_mpl_stem.py +29 -0
  222. scitex/dev/plt/plot_mpl_step.py +29 -0
  223. scitex/dev/plt/plot_mpl_violinplot.py +28 -0
  224. scitex/dev/plt/plot_sns_barplot.py +29 -0
  225. scitex/dev/plt/plot_sns_boxplot.py +29 -0
  226. scitex/dev/plt/plot_sns_heatmap.py +28 -0
  227. scitex/dev/plt/plot_sns_histplot.py +29 -0
  228. scitex/dev/plt/plot_sns_kdeplot.py +29 -0
  229. scitex/dev/plt/plot_sns_lineplot.py +31 -0
  230. scitex/dev/plt/plot_sns_scatterplot.py +29 -0
  231. scitex/dev/plt/plot_sns_stripplot.py +29 -0
  232. scitex/dev/plt/plot_sns_swarmplot.py +29 -0
  233. scitex/dev/plt/plot_sns_violinplot.py +29 -0
  234. scitex/dev/plt/plot_stx_bar.py +29 -0
  235. scitex/dev/plt/plot_stx_barh.py +29 -0
  236. scitex/dev/plt/plot_stx_box.py +28 -0
  237. scitex/dev/plt/plot_stx_boxplot.py +28 -0
  238. scitex/dev/plt/plot_stx_conf_mat.py +28 -0
  239. scitex/dev/plt/plot_stx_contour.py +31 -0
  240. scitex/dev/plt/plot_stx_ecdf.py +28 -0
  241. scitex/dev/plt/plot_stx_errorbar.py +30 -0
  242. scitex/dev/plt/plot_stx_fill_between.py +31 -0
  243. scitex/dev/plt/plot_stx_fillv.py +28 -0
  244. scitex/dev/plt/plot_stx_heatmap.py +28 -0
  245. scitex/dev/plt/plot_stx_image.py +28 -0
  246. scitex/dev/plt/plot_stx_imshow.py +28 -0
  247. scitex/dev/plt/plot_stx_joyplot.py +28 -0
  248. scitex/dev/plt/plot_stx_kde.py +28 -0
  249. scitex/dev/plt/plot_stx_line.py +28 -0
  250. scitex/dev/plt/plot_stx_mean_ci.py +28 -0
  251. scitex/dev/plt/plot_stx_mean_std.py +28 -0
  252. scitex/dev/plt/plot_stx_median_iqr.py +28 -0
  253. scitex/dev/plt/plot_stx_raster.py +28 -0
  254. scitex/dev/plt/plot_stx_rectangle.py +28 -0
  255. scitex/dev/plt/plot_stx_scatter.py +29 -0
  256. scitex/dev/plt/plot_stx_shaded_line.py +29 -0
  257. scitex/dev/plt/plot_stx_violin.py +28 -0
  258. scitex/dev/plt/plot_stx_violinplot.py +28 -0
  259. scitex/dict/_DotDict.py +15 -19
  260. scitex/dict/_flatten.py +1 -0
  261. scitex/dict/_listed_dict.py +1 -0
  262. scitex/dict/_pop_keys.py +1 -0
  263. scitex/dict/_replace.py +1 -0
  264. scitex/dict/_safe_merge.py +1 -0
  265. scitex/dict/_to_str.py +2 -3
  266. scitex/dsp/__init__.py +13 -4
  267. scitex/dsp/_crop.py +3 -1
  268. scitex/dsp/_detect_ripples.py +3 -1
  269. scitex/dsp/_modulation_index.py +3 -1
  270. scitex/dsp/_time.py +3 -1
  271. scitex/dsp/_wavelet.py +0 -1
  272. scitex/dsp/example.py +0 -5
  273. scitex/dsp/filt.py +4 -0
  274. scitex/dsp/utils/__init__.py +4 -1
  275. scitex/dsp/utils/pac.py +3 -3
  276. scitex/dt/_normalize_timestamp.py +4 -1
  277. scitex/errors.py +3 -6
  278. scitex/etc/__init__.py +1 -1
  279. scitex/fig/__init__.py +352 -0
  280. scitex/{vis → fig}/backend/__init__.py +3 -3
  281. scitex/{vis/backend/export.py → fig/backend/_export.py} +1 -1
  282. scitex/{vis/backend/parser.py → fig/backend/_parser.py} +2 -4
  283. scitex/{vis/backend/render.py → fig/backend/_render.py} +1 -1
  284. scitex/{vis → fig}/canvas.py +16 -4
  285. scitex/{vis → fig}/editor/__init__.py +0 -0
  286. scitex/{vis → fig}/editor/_dearpygui_editor.py +450 -304
  287. scitex/fig/editor/_defaults.py +300 -0
  288. scitex/fig/editor/_edit.py +751 -0
  289. scitex/{vis → fig}/editor/_flask_editor.py +8 -8
  290. scitex/{vis → fig}/editor/_mpl_editor.py +63 -48
  291. scitex/{vis → fig}/editor/_qt_editor.py +391 -160
  292. scitex/{vis → fig}/editor/_tkinter_editor.py +146 -89
  293. scitex/fig/editor/flask_editor/__init__.py +21 -0
  294. scitex/fig/editor/flask_editor/_bbox.py +1276 -0
  295. scitex/fig/editor/flask_editor/_core.py +624 -0
  296. scitex/fig/editor/flask_editor/_plotter.py +601 -0
  297. scitex/fig/editor/flask_editor/_renderer.py +739 -0
  298. scitex/{vis/editor/flask_editor/utils.py → fig/editor/flask_editor/_utils.py} +13 -14
  299. scitex/{vis → fig}/editor/flask_editor/templates/__init__.py +6 -6
  300. scitex/fig/editor/flask_editor/templates/_html.py +834 -0
  301. scitex/fig/editor/flask_editor/templates/_scripts.py +3136 -0
  302. scitex/fig/editor/flask_editor/templates/_styles.py +1346 -0
  303. scitex/{vis → fig}/io/__init__.py +18 -6
  304. scitex/fig/io/_bundle.py +973 -0
  305. scitex/{vis/io/canvas.py → fig/io/_canvas.py} +9 -5
  306. scitex/{vis/io/data.py → fig/io/_data.py} +14 -10
  307. scitex/{vis/io/directory.py → fig/io/_directory.py} +7 -4
  308. scitex/{vis/io/export.py → fig/io/_export.py} +16 -13
  309. scitex/{vis/io/load.py → fig/io/_load.py} +2 -2
  310. scitex/{vis/io/panel.py → fig/io/_panel.py} +22 -14
  311. scitex/{vis/io/save.py → fig/io/_save.py} +1 -1
  312. scitex/{vis → fig}/model/__init__.py +8 -8
  313. scitex/{vis/model/annotations.py → fig/model/_annotations.py} +3 -5
  314. scitex/{vis/model/axes.py → fig/model/_axes.py} +2 -2
  315. scitex/{vis/model/figure.py → fig/model/_figure.py} +1 -1
  316. scitex/{vis/model/guides.py → fig/model/_guides.py} +2 -2
  317. scitex/{vis/model/plot.py → fig/model/_plot.py} +3 -5
  318. scitex/{vis/model/plot_types.py → fig/model/_plot_types.py} +0 -0
  319. scitex/{vis/model/styles.py → fig/model/_styles.py} +1 -1
  320. scitex/{vis → fig}/utils/__init__.py +3 -3
  321. scitex/{vis/utils/defaults.py → fig/utils/_defaults.py} +1 -2
  322. scitex/{vis/utils/validate.py → fig/utils/_validate.py} +3 -9
  323. scitex/gen/_DimHandler.py +6 -6
  324. scitex/gen/__init__.py +5 -1
  325. scitex/gen/_deprecated_close.py +1 -0
  326. scitex/gen/_deprecated_start.py +5 -3
  327. scitex/gen/_detect_environment.py +44 -41
  328. scitex/gen/_detect_notebook_path.py +51 -47
  329. scitex/gen/_embed.py +1 -1
  330. scitex/gen/_get_notebook_path.py +81 -62
  331. scitex/gen/_inspect_module.py +0 -1
  332. scitex/gen/_norm.py +16 -7
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  334. scitex/gen/_print_config.py +0 -3
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  928. scitex/scholar/url_finder/translators/individual/caod.py +50 -46
  929. scitex/scholar/url_finder/translators/individual/cbc.py +91 -67
  930. scitex/scholar/url_finder/translators/individual/ccfr_bnf.py +49 -53
  931. scitex/scholar/url_finder/translators/individual/cia_world_factbook.py +43 -33
  932. scitex/scholar/url_finder/translators/individual/crossref_rest.py +208 -174
  933. scitex/scholar/url_finder/translators/individual/current_affairs.py +29 -35
  934. scitex/scholar/url_finder/translators/individual/dabi.py +70 -66
  935. scitex/scholar/url_finder/translators/individual/dagens_nyheter.py +3 -1
  936. scitex/scholar/url_finder/translators/individual/dagstuhl.py +10 -15
  937. scitex/scholar/url_finder/translators/individual/dar_almandumah.py +13 -9
  938. scitex/scholar/url_finder/translators/individual/dart_europe.py +19 -22
  939. scitex/scholar/url_finder/translators/individual/data_gov.py +2 -2
  940. scitex/scholar/url_finder/translators/individual/databrary.py +27 -28
  941. scitex/scholar/url_finder/translators/individual/datacite_json.py +152 -137
  942. scitex/scholar/url_finder/translators/individual/dataverse.py +68 -64
  943. scitex/scholar/url_finder/translators/individual/daum_news.py +38 -38
  944. scitex/scholar/url_finder/translators/individual/dblp.py +4 -8
  945. scitex/scholar/url_finder/translators/individual/dblp_computer_science_bibliography.py +8 -3
  946. scitex/scholar/url_finder/translators/individual/dbpia.py +5 -3
  947. scitex/scholar/url_finder/translators/individual/defense_technical_information_center.py +30 -28
  948. scitex/scholar/url_finder/translators/individual/delpher.py +102 -79
  949. scitex/scholar/url_finder/translators/individual/demographic_research.py +35 -31
  950. scitex/scholar/url_finder/translators/individual/denik_cz.py +58 -54
  951. scitex/scholar/url_finder/translators/individual/depatisnet.py +7 -10
  952. scitex/scholar/url_finder/translators/individual/der_freitag.py +81 -66
  953. scitex/scholar/url_finder/translators/individual/der_spiegel.py +56 -54
  954. scitex/scholar/url_finder/translators/individual/digibib_net.py +3 -1
  955. scitex/scholar/url_finder/translators/individual/digizeitschriften.py +3 -1
  956. scitex/scholar/url_finder/translators/individual/dpla.py +13 -14
  957. scitex/scholar/url_finder/translators/individual/dspace.py +2 -2
  958. scitex/scholar/url_finder/translators/individual/ebrary.py +3 -1
  959. scitex/scholar/url_finder/translators/individual/ebscohost.py +3 -1
  960. scitex/scholar/url_finder/translators/individual/electronic_colloquium_on_computational_complexity.py +3 -1
  961. scitex/scholar/url_finder/translators/individual/elife.py +3 -1
  962. scitex/scholar/url_finder/translators/individual/elsevier_health_journals.py +3 -1
  963. scitex/scholar/url_finder/translators/individual/emerald.py +3 -1
  964. scitex/scholar/url_finder/translators/individual/emerald_insight.py +3 -1
  965. scitex/scholar/url_finder/translators/individual/epicurious.py +3 -1
  966. scitex/scholar/url_finder/translators/individual/eurogamerusgamer.py +3 -1
  967. scitex/scholar/url_finder/translators/individual/fachportal_padagogik.py +3 -1
  968. scitex/scholar/url_finder/translators/individual/frontiers.py +1 -1
  969. scitex/scholar/url_finder/translators/individual/gale_databases.py +3 -1
  970. scitex/scholar/url_finder/translators/individual/gms_german_medical_science.py +6 -2
  971. scitex/scholar/url_finder/translators/individual/ieee_computer_society.py +6 -2
  972. scitex/scholar/url_finder/translators/individual/ieee_xplore.py +41 -35
  973. scitex/scholar/url_finder/translators/individual/inter_research_science_center.py +6 -2
  974. scitex/scholar/url_finder/translators/individual/jisc_historical_texts.py +3 -1
  975. scitex/scholar/url_finder/translators/individual/jstor.py +14 -12
  976. scitex/scholar/url_finder/translators/individual/korean_national_library.py +3 -1
  977. scitex/scholar/url_finder/translators/individual/la_times.py +3 -1
  978. scitex/scholar/url_finder/translators/individual/landesbibliographie_baden_wurttemberg.py +3 -1
  979. scitex/scholar/url_finder/translators/individual/legislative_insight.py +3 -1
  980. scitex/scholar/url_finder/translators/individual/libraries_tasmania.py +3 -1
  981. scitex/scholar/url_finder/translators/individual/library_catalog__koha_.py +3 -1
  982. scitex/scholar/url_finder/translators/individual/lingbuzz.py +2 -2
  983. scitex/scholar/url_finder/translators/individual/max_planck_institute_for_the_history_of_science_virtual_laboratory_library.py +3 -1
  984. scitex/scholar/url_finder/translators/individual/mdpi.py +12 -6
  985. scitex/scholar/url_finder/translators/individual/microbiology_society_journals.py +3 -1
  986. scitex/scholar/url_finder/translators/individual/midas_journals.py +3 -1
  987. scitex/scholar/url_finder/translators/individual/nagoya_university_opac.py +3 -1
  988. scitex/scholar/url_finder/translators/individual/nature_publishing_group.py +32 -19
  989. scitex/scholar/url_finder/translators/individual/ntsb_accident_reports.py +3 -1
  990. scitex/scholar/url_finder/translators/individual/openedition_journals.py +8 -4
  991. scitex/scholar/url_finder/translators/individual/orcid.py +16 -15
  992. scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
  993. scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
  994. scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
  995. scitex/scholar/url_finder/translators/individual/plos.py +9 -12
  996. scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
  997. scitex/scholar/url_finder/translators/individual/primo.py +3 -1
  998. scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
  999. scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
  1000. scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
  1001. scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
  1002. scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
  1003. scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
  1004. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  1005. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  1006. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  1007. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  1008. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  1009. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  1010. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  1011. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  1012. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  1013. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  1014. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  1015. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  1016. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  1017. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  1018. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  1019. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  1020. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  1021. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  1022. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  1023. scitex/scholar/utils/validation/__init__.py +0 -0
  1024. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  1025. scitex/scholar/zotero/__init__.py +1 -1
  1026. scitex/security/cli.py +7 -20
  1027. scitex/security/github.py +45 -32
  1028. scitex/session/__init__.py +8 -9
  1029. scitex/session/_decorator.py +49 -42
  1030. scitex/session/_lifecycle.py +39 -39
  1031. scitex/session/_manager.py +24 -20
  1032. scitex/sh/__init__.py +4 -3
  1033. scitex/sh/_execute.py +10 -7
  1034. scitex/sh/_security.py +3 -3
  1035. scitex/sh/_types.py +2 -3
  1036. scitex/stats/__init__.py +174 -6
  1037. scitex/stats/_schema.py +42 -569
  1038. scitex/stats/auto/__init__.py +188 -0
  1039. scitex/stats/auto/_context.py +331 -0
  1040. scitex/stats/auto/_formatting.py +679 -0
  1041. scitex/stats/auto/_rules.py +901 -0
  1042. scitex/stats/auto/_selector.py +554 -0
  1043. scitex/stats/auto/_styles.py +721 -0
  1044. scitex/stats/correct/__init__.py +4 -4
  1045. scitex/stats/correct/_correct_bonferroni.py +43 -34
  1046. scitex/stats/correct/_correct_fdr.py +14 -40
  1047. scitex/stats/correct/_correct_fdr_.py +39 -46
  1048. scitex/stats/correct/_correct_holm.py +14 -32
  1049. scitex/stats/correct/_correct_sidak.py +36 -21
  1050. scitex/stats/descriptive/_circular.py +20 -21
  1051. scitex/stats/descriptive/_describe.py +19 -5
  1052. scitex/stats/descriptive/_nan.py +5 -7
  1053. scitex/stats/descriptive/_real.py +4 -3
  1054. scitex/stats/effect_sizes/__init__.py +10 -11
  1055. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  1056. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  1057. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  1058. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  1059. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  1060. scitex/stats/io/__init__.py +29 -0
  1061. scitex/stats/io/_bundle.py +156 -0
  1062. scitex/stats/posthoc/__init__.py +3 -3
  1063. scitex/stats/posthoc/_dunnett.py +75 -55
  1064. scitex/stats/posthoc/_games_howell.py +61 -43
  1065. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  1066. scitex/stats/power/__init__.py +2 -2
  1067. scitex/stats/power/_power.py +56 -56
  1068. scitex/stats/tests/__init__.py +1 -1
  1069. scitex/stats/tests/correlation/__init__.py +1 -1
  1070. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  1071. scitex/stats/utils/__init__.py +14 -17
  1072. scitex/stats/utils/_effect_size.py +85 -78
  1073. scitex/stats/utils/_formatters.py +49 -43
  1074. scitex/stats/utils/_normalizers.py +7 -14
  1075. scitex/stats/utils/_power.py +56 -56
  1076. scitex/str/__init__.py +1 -0
  1077. scitex/str/_clean_path.py +3 -3
  1078. scitex/str/_factor_out_digits.py +86 -58
  1079. scitex/str/_format_plot_text.py +180 -111
  1080. scitex/str/_latex.py +19 -19
  1081. scitex/str/_latex_fallback.py +9 -10
  1082. scitex/str/_parse.py +3 -6
  1083. scitex/str/_print_debug.py +13 -13
  1084. scitex/str/_printc.py +2 -0
  1085. scitex/str/_search.py +3 -3
  1086. scitex/template/.legacy/_clone_project.py +9 -13
  1087. scitex/template/__init__.py +10 -2
  1088. scitex/template/_clone_project.py +7 -2
  1089. scitex/template/_copy.py +1 -0
  1090. scitex/template/_customize.py +3 -6
  1091. scitex/template/_git_strategy.py +2 -3
  1092. scitex/template/_rename.py +1 -0
  1093. scitex/template/clone_pip_project.py +6 -7
  1094. scitex/template/clone_research.py +7 -10
  1095. scitex/template/clone_singularity.py +6 -7
  1096. scitex/template/clone_writer_directory.py +6 -7
  1097. scitex/tex/__init__.py +4 -0
  1098. scitex/tex/_export.py +890 -0
  1099. scitex/tex/_preview.py +26 -11
  1100. scitex/tex/_to_vec.py +10 -7
  1101. scitex/torch/__init__.py +11 -1
  1102. scitex/types/_ArrayLike.py +2 -0
  1103. scitex/types/_is_listed_X.py +3 -3
  1104. scitex/units.py +110 -77
  1105. scitex/utils/_compress_hdf5.py +3 -3
  1106. scitex/utils/_email.py +8 -4
  1107. scitex/utils/_notify.py +14 -8
  1108. scitex/utils/_search.py +6 -6
  1109. scitex/utils/_verify_scitex_format.py +17 -42
  1110. scitex/utils/_verify_scitex_format_v01.py +12 -34
  1111. scitex/utils/template.py +4 -3
  1112. scitex/web/__init__.py +7 -1
  1113. scitex/web/_scraping.py +54 -38
  1114. scitex/web/_search_pubmed.py +30 -14
  1115. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1116. scitex/writer/.legacy/_compile.py +18 -28
  1117. scitex/writer/Writer.py +8 -21
  1118. scitex/writer/__init__.py +11 -11
  1119. scitex/writer/_clone_writer_project.py +2 -6
  1120. scitex/writer/_compile/__init__.py +1 -0
  1121. scitex/writer/_compile/_parser.py +1 -0
  1122. scitex/writer/_compile/_runner.py +35 -38
  1123. scitex/writer/_compile/_validator.py +1 -0
  1124. scitex/writer/_compile/manuscript.py +1 -0
  1125. scitex/writer/_compile/revision.py +1 -0
  1126. scitex/writer/_compile/supplementary.py +1 -0
  1127. scitex/writer/_compile_async.py +5 -12
  1128. scitex/writer/_project/__init__.py +1 -0
  1129. scitex/writer/_project/_create.py +10 -25
  1130. scitex/writer/_project/_trees.py +4 -9
  1131. scitex/writer/_project/_validate.py +2 -3
  1132. scitex/writer/_validate_tree_structures.py +7 -18
  1133. scitex/writer/dataclasses/__init__.py +8 -10
  1134. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1135. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1136. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1137. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1138. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1139. scitex/writer/dataclasses/core/_Document.py +2 -3
  1140. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1141. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1142. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1143. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1144. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1145. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1146. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1147. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1148. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1149. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1150. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1151. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1152. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1153. scitex/writer/utils/_parse_script_args.py +20 -23
  1154. scitex/writer/utils/_watch.py +5 -5
  1155. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/METADATA +14 -10
  1156. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/RECORD +1149 -985
  1157. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1158. scitex/io/memo.md +0 -2827
  1159. scitex/plt/_subplots/TODO.md +0 -53
  1160. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +0 -537
  1161. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +0 -1499
  1162. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +0 -431
  1163. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1164. scitex/vis/__init__.py +0 -177
  1165. scitex/vis/editor/_defaults.py +0 -244
  1166. scitex/vis/editor/_edit.py +0 -378
  1167. scitex/vis/editor/flask_editor/__init__.py +0 -21
  1168. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1169. scitex/vis/editor/flask_editor/core.py +0 -152
  1170. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1171. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1172. scitex/vis/editor/flask_editor/templates/html.py +0 -295
  1173. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1174. scitex/vis/editor/flask_editor/templates/styles.py +0 -549
  1175. /scitex/{vis → fig}/README.md +0 -0
  1176. /scitex/{vis → fig}/docs/CANVAS_ARCHITECTURE.md +0 -0
  1177. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/WHEEL +0 -0
  1178. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/entry_points.txt +0 -0
  1179. {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/licenses/LICENSE +0 -0
@@ -13,24 +13,28 @@ def _get_qt():
13
13
  """Get Qt bindings (PyQt6, PyQt5, PySide6, or PySide2)."""
14
14
  try:
15
15
  from PyQt6 import QtWidgets, QtCore, QtGui
16
+
16
17
  return QtWidgets, QtCore, QtGui, "PyQt6"
17
18
  except ImportError:
18
19
  pass
19
20
 
20
21
  try:
21
22
  from PyQt5 import QtWidgets, QtCore, QtGui
23
+
22
24
  return QtWidgets, QtCore, QtGui, "PyQt5"
23
25
  except ImportError:
24
26
  pass
25
27
 
26
28
  try:
27
29
  from PySide6 import QtWidgets, QtCore, QtGui
30
+
28
31
  return QtWidgets, QtCore, QtGui, "PySide6"
29
32
  except ImportError:
30
33
  pass
31
34
 
32
35
  try:
33
36
  from PySide2 import QtWidgets, QtCore, QtGui
37
+
34
38
  return QtWidgets, QtCore, QtGui, "PySide2"
35
39
  except ImportError:
36
40
  pass
@@ -52,6 +56,7 @@ class QtEditor:
52
56
  - Real-time preview updates
53
57
  - Save to .manual.json
54
58
  - SciTeX style defaults pre-filled
59
+ - Hitmap-based element selection (when available)
55
60
  """
56
61
 
57
62
  def __init__(
@@ -61,15 +66,36 @@ class QtEditor:
61
66
  csv_data: Optional[Any] = None,
62
67
  png_path: Optional[Path] = None,
63
68
  manual_overrides: Optional[Dict[str, Any]] = None,
69
+ hitmap_path: Optional[Path] = None,
70
+ bundle_spec: Optional[Dict[str, Any]] = None,
64
71
  ):
65
72
  self.json_path = Path(json_path)
66
73
  self.metadata = metadata
67
74
  self.csv_data = csv_data
68
75
  self.png_path = Path(png_path) if png_path else None
69
76
  self.manual_overrides = manual_overrides or {}
77
+ self.hitmap_path = Path(hitmap_path) if hitmap_path else None
78
+ self.bundle_spec = bundle_spec or {}
79
+
80
+ # Load hitmap image if available
81
+ self.hitmap_array = None
82
+ if self.hitmap_path and self.hitmap_path.exists():
83
+ try:
84
+ from PIL import Image
85
+ import numpy as np
86
+ hitmap_img = Image.open(self.hitmap_path).convert('RGB')
87
+ self.hitmap_array = np.array(hitmap_img)
88
+ except Exception:
89
+ pass
90
+
91
+ # Extract hit_regions and selectable_regions from spec
92
+ self.hit_regions = self.bundle_spec.get('hit_regions', {})
93
+ self.selectable_regions = self.bundle_spec.get('selectable_regions', {})
94
+ self.color_map = self.hit_regions.get('color_map', {})
70
95
 
71
96
  # Get SciTeX defaults and merge with metadata
72
97
  from ._defaults import get_scitex_defaults, extract_defaults_from_metadata
98
+
73
99
  self.scitex_defaults = get_scitex_defaults()
74
100
  self.metadata_defaults = extract_defaults_from_metadata(metadata)
75
101
 
@@ -99,13 +125,11 @@ class QtEditor:
99
125
  self.app = QtWidgets.QApplication([])
100
126
 
101
127
  # Create main window
102
- self.main_window = QtEditorWindow(
103
- self, QtWidgets, QtCore, QtGui, qt_version
104
- )
128
+ self.main_window = QtEditorWindow(self, QtWidgets, QtCore, QtGui, qt_version)
105
129
  self.main_window.show()
106
130
 
107
131
  # Start event loop
108
- self.app.exec() if hasattr(self.app, 'exec') else self.app.exec_()
132
+ self.app.exec() if hasattr(self.app, "exec") else self.app.exec_()
109
133
 
110
134
 
111
135
  class QtEditorWindow:
@@ -130,9 +154,11 @@ class QtEditorWindow:
130
154
  layout = QtWidgets.QHBoxLayout(central_widget)
131
155
 
132
156
  # Splitter for resizable panels
133
- splitter = QtWidgets.QSplitter(QtCore.Qt.Orientation.Horizontal
134
- if hasattr(QtCore.Qt, 'Orientation')
135
- else QtCore.Qt.Horizontal)
157
+ splitter = QtWidgets.QSplitter(
158
+ QtCore.Qt.Orientation.Horizontal
159
+ if hasattr(QtCore.Qt, "Orientation")
160
+ else QtCore.Qt.Horizontal
161
+ )
136
162
  layout.addWidget(splitter)
137
163
 
138
164
  # Left panel: Canvas
@@ -159,7 +185,7 @@ class QtEditorWindow:
159
185
  self.window.show()
160
186
 
161
187
  def _create_canvas_panel(self, parent):
162
- """Create the matplotlib canvas panel."""
188
+ """Create the matplotlib canvas panel with hitmap-based selection."""
163
189
  from matplotlib.backends.backend_qtagg import FigureCanvasQTAgg
164
190
  from matplotlib.backends.backend_qtagg import NavigationToolbar2QT
165
191
  from matplotlib.figure import Figure
@@ -179,8 +205,167 @@ class QtEditorWindow:
179
205
  toolbar = NavigationToolbar2QT(self.canvas, canvas_widget)
180
206
  canvas_layout.addWidget(toolbar)
181
207
 
208
+ # Connect click event for hitmap-based selection
209
+ self.canvas.mpl_connect('button_press_event', self._on_canvas_click)
210
+
211
+ # Selection info label
212
+ self.selection_label = self.QtWidgets.QLabel("Click on figure to select element")
213
+ self.selection_label.setStyleSheet("padding: 5px; background: #f0f0f0; border-radius: 3px;")
214
+ canvas_layout.addWidget(self.selection_label)
215
+
182
216
  parent.addWidget(canvas_widget)
183
217
 
218
+ def _on_canvas_click(self, event):
219
+ """Handle canvas click - use hitmap to identify clicked element."""
220
+ if event.inaxes is None:
221
+ return
222
+
223
+ # Get pixel coordinates
224
+ x_px = int(event.x)
225
+ y_px = int(self.canvas.get_width_height()[1] - event.y) # Flip Y
226
+
227
+ # First check selectable_regions (bounding boxes for axis elements)
228
+ selection_info = self._check_selectable_regions(x_px, y_px)
229
+
230
+ # If no selectable_region hit, try hitmap for data elements
231
+ if selection_info is None and self.editor.hitmap_array is not None:
232
+ selection_info = self._check_hitmap(x_px, y_px)
233
+
234
+ # Update selection display
235
+ if selection_info:
236
+ self._show_selection(selection_info)
237
+ else:
238
+ self.selection_label.setText(f"No element at ({x_px}, {y_px})")
239
+ self.status_bar.showMessage(f"Click at ({x_px}, {y_px}) - no element found")
240
+
241
+ def _check_selectable_regions(self, x_px: int, y_px: int) -> Optional[Dict[str, Any]]:
242
+ """Check if click is within any selectable_region bounding box."""
243
+ regions = self.editor.selectable_regions
244
+ if not regions or 'axes' not in regions:
245
+ return None
246
+
247
+ for ax_info in regions['axes']:
248
+ ax_idx = ax_info.get('index', 0)
249
+
250
+ # Check title
251
+ if 'title' in ax_info:
252
+ bbox = ax_info['title'].get('bbox_px', [])
253
+ if len(bbox) == 4 and self._point_in_bbox(x_px, y_px, bbox):
254
+ return {
255
+ 'type': 'title',
256
+ 'axes_index': ax_idx,
257
+ 'text': ax_info['title'].get('text', ''),
258
+ 'element': 'title',
259
+ }
260
+
261
+ # Check xlabel
262
+ if 'xlabel' in ax_info:
263
+ bbox = ax_info['xlabel'].get('bbox_px', [])
264
+ if len(bbox) == 4 and self._point_in_bbox(x_px, y_px, bbox):
265
+ return {
266
+ 'type': 'xlabel',
267
+ 'axes_index': ax_idx,
268
+ 'text': ax_info['xlabel'].get('text', ''),
269
+ 'element': 'xlabel',
270
+ }
271
+
272
+ # Check ylabel
273
+ if 'ylabel' in ax_info:
274
+ bbox = ax_info['ylabel'].get('bbox_px', [])
275
+ if len(bbox) == 4 and self._point_in_bbox(x_px, y_px, bbox):
276
+ return {
277
+ 'type': 'ylabel',
278
+ 'axes_index': ax_idx,
279
+ 'text': ax_info['ylabel'].get('text', ''),
280
+ 'element': 'ylabel',
281
+ }
282
+
283
+ # Check legend
284
+ if 'legend' in ax_info:
285
+ bbox = ax_info['legend'].get('bbox_px', [])
286
+ if len(bbox) == 4 and self._point_in_bbox(x_px, y_px, bbox):
287
+ return {
288
+ 'type': 'legend',
289
+ 'axes_index': ax_idx,
290
+ 'element': 'legend',
291
+ }
292
+
293
+ # Check xaxis elements
294
+ if 'xaxis' in ax_info:
295
+ xaxis = ax_info['xaxis']
296
+ if 'spine' in xaxis and xaxis['spine']:
297
+ bbox = xaxis['spine'].get('bbox_px', [])
298
+ if len(bbox) == 4 and self._point_in_bbox(x_px, y_px, bbox):
299
+ return {'type': 'xaxis_spine', 'axes_index': ax_idx, 'element': 'xaxis'}
300
+
301
+ # Check yaxis elements
302
+ if 'yaxis' in ax_info:
303
+ yaxis = ax_info['yaxis']
304
+ if 'spine' in yaxis and yaxis['spine']:
305
+ bbox = yaxis['spine'].get('bbox_px', [])
306
+ if len(bbox) == 4 and self._point_in_bbox(x_px, y_px, bbox):
307
+ return {'type': 'yaxis_spine', 'axes_index': ax_idx, 'element': 'yaxis'}
308
+
309
+ return None
310
+
311
+ def _check_hitmap(self, x_px: int, y_px: int) -> Optional[Dict[str, Any]]:
312
+ """Check hitmap for data element at pixel position."""
313
+ hitmap = self.editor.hitmap_array
314
+ color_map = self.editor.color_map
315
+
316
+ if hitmap is None or not color_map:
317
+ return None
318
+
319
+ # Bounds check
320
+ h, w = hitmap.shape[:2]
321
+ if x_px < 0 or x_px >= w or y_px < 0 or y_px >= h:
322
+ return None
323
+
324
+ # Get RGB at position
325
+ r, g, b = hitmap[y_px, x_px]
326
+
327
+ # Skip background (black) and axes elements (dark gray)
328
+ if (r, g, b) == (0, 0, 0): # Background
329
+ return None
330
+ if (r, g, b) == (64, 64, 64): # Axes color (#404040)
331
+ return None
332
+
333
+ # Convert RGB to ID
334
+ element_id = r * 65536 + g * 256 + b
335
+
336
+ # Look up in color_map
337
+ if str(element_id) in color_map:
338
+ info = color_map[str(element_id)]
339
+ return {
340
+ 'type': 'data_element',
341
+ 'element_id': element_id,
342
+ 'element_type': info.get('type', 'unknown'),
343
+ 'label': info.get('label', ''),
344
+ 'axes_index': info.get('axes_index', 0),
345
+ 'rgb': [r, g, b],
346
+ }
347
+
348
+ return None
349
+
350
+ def _point_in_bbox(self, x: int, y: int, bbox: list) -> bool:
351
+ """Check if point (x, y) is within bounding box [x0, y0, x1, y1]."""
352
+ x0, y0, x1, y1 = bbox
353
+ return x0 <= x <= x1 and y0 <= y <= y1
354
+
355
+ def _show_selection(self, info: Dict[str, Any]):
356
+ """Display selection info in UI."""
357
+ if info['type'] == 'data_element':
358
+ text = f"Selected: {info['element_type']} - {info.get('label', 'unnamed')}"
359
+ detail = f"ID: {info['element_id']}, Axes: {info['axes_index']}"
360
+ else:
361
+ text = f"Selected: {info['type']}"
362
+ if 'text' in info:
363
+ text += f" - \"{info['text']}\""
364
+ detail = f"Axes: {info.get('axes_index', 0)}"
365
+
366
+ self.selection_label.setText(f"{text}\n{detail}")
367
+ self.status_bar.showMessage(text)
368
+
184
369
  def _create_control_panel(self, parent):
185
370
  """Create the control panel with property editors."""
186
371
  scroll_area = self.QtWidgets.QScrollArea()
@@ -237,19 +422,19 @@ class QtEditorWindow:
237
422
  layout = self.QtWidgets.QFormLayout(group)
238
423
 
239
424
  self.title_edit = self.QtWidgets.QLineEdit(
240
- self.editor.current_overrides.get('title', '')
425
+ self.editor.current_overrides.get("title", "")
241
426
  )
242
427
  self.title_edit.editingFinished.connect(self._on_value_change)
243
428
  layout.addRow("Title:", self.title_edit)
244
429
 
245
430
  self.xlabel_edit = self.QtWidgets.QLineEdit(
246
- self.editor.current_overrides.get('xlabel', '')
431
+ self.editor.current_overrides.get("xlabel", "")
247
432
  )
248
433
  self.xlabel_edit.editingFinished.connect(self._on_value_change)
249
434
  layout.addRow("X Label:", self.xlabel_edit)
250
435
 
251
436
  self.ylabel_edit = self.QtWidgets.QLineEdit(
252
- self.editor.current_overrides.get('ylabel', '')
437
+ self.editor.current_overrides.get("ylabel", "")
253
438
  )
254
439
  self.ylabel_edit.editingFinished.connect(self._on_value_change)
255
440
  layout.addRow("Y Label:", self.ylabel_edit)
@@ -261,8 +446,8 @@ class QtEditorWindow:
261
446
  group = self._create_group_box("Axis Limits")
262
447
  layout = self.QtWidgets.QGridLayout(group)
263
448
 
264
- xlim = self.editor.current_overrides.get('xlim', [0, 1])
265
- ylim = self.editor.current_overrides.get('ylim', [0, 1])
449
+ xlim = self.editor.current_overrides.get("xlim", [0, 1])
450
+ ylim = self.editor.current_overrides.get("ylim", [0, 1])
266
451
 
267
452
  layout.addWidget(self.QtWidgets.QLabel("X Min:"), 0, 0)
268
453
  self.xmin_spin = self.QtWidgets.QDoubleSpinBox()
@@ -306,7 +491,9 @@ class QtEditorWindow:
306
491
  self.linewidth_spin = self.QtWidgets.QDoubleSpinBox()
307
492
  self.linewidth_spin.setRange(0.1, 10.0)
308
493
  self.linewidth_spin.setSingleStep(0.1)
309
- self.linewidth_spin.setValue(self.editor.current_overrides.get('linewidth', 1.0))
494
+ self.linewidth_spin.setValue(
495
+ self.editor.current_overrides.get("linewidth", 1.0)
496
+ )
310
497
  self.linewidth_spin.valueChanged.connect(self._on_value_change)
311
498
  layout.addRow("Line Width (pt):", self.linewidth_spin)
312
499
 
@@ -319,25 +506,33 @@ class QtEditorWindow:
319
506
 
320
507
  self.title_fontsize_spin = self.QtWidgets.QSpinBox()
321
508
  self.title_fontsize_spin.setRange(6, 24)
322
- self.title_fontsize_spin.setValue(self.editor.current_overrides.get('title_fontsize', 8))
509
+ self.title_fontsize_spin.setValue(
510
+ self.editor.current_overrides.get("title_fontsize", 8)
511
+ )
323
512
  self.title_fontsize_spin.valueChanged.connect(self._on_value_change)
324
513
  layout.addRow("Title Font Size:", self.title_fontsize_spin)
325
514
 
326
515
  self.axis_fontsize_spin = self.QtWidgets.QSpinBox()
327
516
  self.axis_fontsize_spin.setRange(6, 24)
328
- self.axis_fontsize_spin.setValue(self.editor.current_overrides.get('axis_fontsize', 7))
517
+ self.axis_fontsize_spin.setValue(
518
+ self.editor.current_overrides.get("axis_fontsize", 7)
519
+ )
329
520
  self.axis_fontsize_spin.valueChanged.connect(self._on_value_change)
330
521
  layout.addRow("Axis Font Size:", self.axis_fontsize_spin)
331
522
 
332
523
  self.tick_fontsize_spin = self.QtWidgets.QSpinBox()
333
524
  self.tick_fontsize_spin.setRange(6, 24)
334
- self.tick_fontsize_spin.setValue(self.editor.current_overrides.get('tick_fontsize', 7))
525
+ self.tick_fontsize_spin.setValue(
526
+ self.editor.current_overrides.get("tick_fontsize", 7)
527
+ )
335
528
  self.tick_fontsize_spin.valueChanged.connect(self._on_value_change)
336
529
  layout.addRow("Tick Font Size:", self.tick_fontsize_spin)
337
530
 
338
531
  self.legend_fontsize_spin = self.QtWidgets.QSpinBox()
339
532
  self.legend_fontsize_spin.setRange(4, 20)
340
- self.legend_fontsize_spin.setValue(self.editor.current_overrides.get('legend_fontsize', 6))
533
+ self.legend_fontsize_spin.setValue(
534
+ self.editor.current_overrides.get("legend_fontsize", 6)
535
+ )
341
536
  self.legend_fontsize_spin.valueChanged.connect(self._on_value_change)
342
537
  layout.addRow("Legend Font Size:", self.legend_fontsize_spin)
343
538
 
@@ -350,28 +545,32 @@ class QtEditorWindow:
350
545
 
351
546
  self.n_ticks_spin = self.QtWidgets.QSpinBox()
352
547
  self.n_ticks_spin.setRange(2, 15)
353
- self.n_ticks_spin.setValue(self.editor.current_overrides.get('n_ticks', 4))
548
+ self.n_ticks_spin.setValue(self.editor.current_overrides.get("n_ticks", 4))
354
549
  self.n_ticks_spin.valueChanged.connect(self._on_value_change)
355
550
  layout.addRow("N Ticks:", self.n_ticks_spin)
356
551
 
357
552
  self.tick_length_spin = self.QtWidgets.QDoubleSpinBox()
358
553
  self.tick_length_spin.setRange(0.1, 5.0)
359
554
  self.tick_length_spin.setSingleStep(0.1)
360
- self.tick_length_spin.setValue(self.editor.current_overrides.get('tick_length', 0.8))
555
+ self.tick_length_spin.setValue(
556
+ self.editor.current_overrides.get("tick_length", 0.8)
557
+ )
361
558
  self.tick_length_spin.valueChanged.connect(self._on_value_change)
362
559
  layout.addRow("Tick Length (mm):", self.tick_length_spin)
363
560
 
364
561
  self.tick_width_spin = self.QtWidgets.QDoubleSpinBox()
365
562
  self.tick_width_spin.setRange(0.05, 2.0)
366
563
  self.tick_width_spin.setSingleStep(0.05)
367
- self.tick_width_spin.setValue(self.editor.current_overrides.get('tick_width', 0.2))
564
+ self.tick_width_spin.setValue(
565
+ self.editor.current_overrides.get("tick_width", 0.2)
566
+ )
368
567
  self.tick_width_spin.valueChanged.connect(self._on_value_change)
369
568
  layout.addRow("Tick Width (mm):", self.tick_width_spin)
370
569
 
371
570
  self.tick_direction_combo = self.QtWidgets.QComboBox()
372
571
  self.tick_direction_combo.addItems(["out", "in", "inout"])
373
572
  self.tick_direction_combo.setCurrentText(
374
- self.editor.current_overrides.get('tick_direction', 'out')
573
+ self.editor.current_overrides.get("tick_direction", "out")
375
574
  )
376
575
  self.tick_direction_combo.currentTextChanged.connect(self._on_value_change)
377
576
  layout.addRow("Tick Direction:", self.tick_direction_combo)
@@ -384,27 +583,27 @@ class QtEditorWindow:
384
583
  layout = self.QtWidgets.QFormLayout(group)
385
584
 
386
585
  self.grid_check = self.QtWidgets.QCheckBox()
387
- self.grid_check.setChecked(self.editor.current_overrides.get('grid', False))
586
+ self.grid_check.setChecked(self.editor.current_overrides.get("grid", False))
388
587
  self.grid_check.stateChanged.connect(self._on_value_change)
389
588
  layout.addRow("Show Grid:", self.grid_check)
390
589
 
391
590
  self.hide_top_spine_check = self.QtWidgets.QCheckBox()
392
591
  self.hide_top_spine_check.setChecked(
393
- self.editor.current_overrides.get('hide_top_spine', True)
592
+ self.editor.current_overrides.get("hide_top_spine", True)
394
593
  )
395
594
  self.hide_top_spine_check.stateChanged.connect(self._on_value_change)
396
595
  layout.addRow("Hide Top Spine:", self.hide_top_spine_check)
397
596
 
398
597
  self.hide_right_spine_check = self.QtWidgets.QCheckBox()
399
598
  self.hide_right_spine_check.setChecked(
400
- self.editor.current_overrides.get('hide_right_spine', True)
599
+ self.editor.current_overrides.get("hide_right_spine", True)
401
600
  )
402
601
  self.hide_right_spine_check.stateChanged.connect(self._on_value_change)
403
602
  layout.addRow("Hide Right Spine:", self.hide_right_spine_check)
404
603
 
405
604
  self.transparent_check = self.QtWidgets.QCheckBox()
406
605
  self.transparent_check.setChecked(
407
- self.editor.current_overrides.get('transparent', True)
606
+ self.editor.current_overrides.get("transparent", True)
408
607
  )
409
608
  self.transparent_check.stateChanged.connect(self._on_value_change)
410
609
  layout.addRow("Transparent BG:", self.transparent_check)
@@ -412,12 +611,14 @@ class QtEditorWindow:
412
611
  self.axis_width_spin = self.QtWidgets.QDoubleSpinBox()
413
612
  self.axis_width_spin.setRange(0.05, 2.0)
414
613
  self.axis_width_spin.setSingleStep(0.05)
415
- self.axis_width_spin.setValue(self.editor.current_overrides.get('axis_width', 0.2))
614
+ self.axis_width_spin.setValue(
615
+ self.editor.current_overrides.get("axis_width", 0.2)
616
+ )
416
617
  self.axis_width_spin.valueChanged.connect(self._on_value_change)
417
618
  layout.addRow("Axis Width (mm):", self.axis_width_spin)
418
619
 
419
620
  # Background color button
420
- self.bg_color = self.editor.current_overrides.get('facecolor', '#ffffff')
621
+ self.bg_color = self.editor.current_overrides.get("facecolor", "#ffffff")
421
622
  self.bg_color_btn = self.QtWidgets.QPushButton("Choose...")
422
623
  self.bg_color_btn.clicked.connect(self._choose_bg_color)
423
624
  layout.addRow("Background Color:", self.bg_color_btn)
@@ -431,26 +632,35 @@ class QtEditorWindow:
431
632
 
432
633
  self.legend_visible_check = self.QtWidgets.QCheckBox()
433
634
  self.legend_visible_check.setChecked(
434
- self.editor.current_overrides.get('legend_visible', True)
635
+ self.editor.current_overrides.get("legend_visible", True)
435
636
  )
436
637
  self.legend_visible_check.stateChanged.connect(self._on_value_change)
437
638
  layout.addRow("Show Legend:", self.legend_visible_check)
438
639
 
439
640
  self.legend_frameon_check = self.QtWidgets.QCheckBox()
440
641
  self.legend_frameon_check.setChecked(
441
- self.editor.current_overrides.get('legend_frameon', False)
642
+ self.editor.current_overrides.get("legend_frameon", False)
442
643
  )
443
644
  self.legend_frameon_check.stateChanged.connect(self._on_value_change)
444
645
  layout.addRow("Show Frame:", self.legend_frameon_check)
445
646
 
446
647
  self.legend_loc_combo = self.QtWidgets.QComboBox()
447
- self.legend_loc_combo.addItems([
448
- "best", "upper right", "upper left", "lower right",
449
- "lower left", "center right", "center left",
450
- "upper center", "lower center", "center"
451
- ])
648
+ self.legend_loc_combo.addItems(
649
+ [
650
+ "best",
651
+ "upper right",
652
+ "upper left",
653
+ "lower right",
654
+ "lower left",
655
+ "center right",
656
+ "center left",
657
+ "upper center",
658
+ "lower center",
659
+ "center",
660
+ ]
661
+ )
452
662
  self.legend_loc_combo.setCurrentText(
453
- self.editor.current_overrides.get('legend_loc', 'best')
663
+ self.editor.current_overrides.get("legend_loc", "best")
454
664
  )
455
665
  self.legend_loc_combo.currentTextChanged.connect(self._on_value_change)
456
666
  layout.addRow("Position:", self.legend_loc_combo)
@@ -462,7 +672,7 @@ class QtEditorWindow:
462
672
  group = self._create_group_box("Dimensions")
463
673
  layout = self.QtWidgets.QFormLayout(group)
464
674
 
465
- fig_size = self.editor.current_overrides.get('fig_size', [3.15, 2.68])
675
+ fig_size = self.editor.current_overrides.get("fig_size", [3.15, 2.68])
466
676
 
467
677
  self.fig_width_spin = self.QtWidgets.QDoubleSpinBox()
468
678
  self.fig_width_spin.setRange(1.0, 20.0)
@@ -478,7 +688,7 @@ class QtEditorWindow:
478
688
 
479
689
  self.dpi_spin = self.QtWidgets.QSpinBox()
480
690
  self.dpi_spin.setRange(72, 600)
481
- self.dpi_spin.setValue(self.editor.current_overrides.get('dpi', 300))
691
+ self.dpi_spin.setValue(self.editor.current_overrides.get("dpi", 300))
482
692
  self.dpi_spin.valueChanged.connect(self._on_value_change)
483
693
  layout.addRow("DPI:", self.dpi_spin)
484
694
 
@@ -563,41 +773,41 @@ class QtEditorWindow:
563
773
  o = self.editor.current_overrides
564
774
 
565
775
  # Labels
566
- o['title'] = self.title_edit.text()
567
- o['xlabel'] = self.xlabel_edit.text()
568
- o['ylabel'] = self.ylabel_edit.text()
776
+ o["title"] = self.title_edit.text()
777
+ o["xlabel"] = self.xlabel_edit.text()
778
+ o["ylabel"] = self.ylabel_edit.text()
569
779
 
570
780
  # Line style
571
- o['linewidth'] = self.linewidth_spin.value()
781
+ o["linewidth"] = self.linewidth_spin.value()
572
782
 
573
783
  # Font settings
574
- o['title_fontsize'] = self.title_fontsize_spin.value()
575
- o['axis_fontsize'] = self.axis_fontsize_spin.value()
576
- o['tick_fontsize'] = self.tick_fontsize_spin.value()
577
- o['legend_fontsize'] = self.legend_fontsize_spin.value()
784
+ o["title_fontsize"] = self.title_fontsize_spin.value()
785
+ o["axis_fontsize"] = self.axis_fontsize_spin.value()
786
+ o["tick_fontsize"] = self.tick_fontsize_spin.value()
787
+ o["legend_fontsize"] = self.legend_fontsize_spin.value()
578
788
 
579
789
  # Tick settings
580
- o['n_ticks'] = self.n_ticks_spin.value()
581
- o['tick_length'] = self.tick_length_spin.value()
582
- o['tick_width'] = self.tick_width_spin.value()
583
- o['tick_direction'] = self.tick_direction_combo.currentText()
790
+ o["n_ticks"] = self.n_ticks_spin.value()
791
+ o["tick_length"] = self.tick_length_spin.value()
792
+ o["tick_width"] = self.tick_width_spin.value()
793
+ o["tick_direction"] = self.tick_direction_combo.currentText()
584
794
 
585
795
  # Style
586
- o['grid'] = self.grid_check.isChecked()
587
- o['hide_top_spine'] = self.hide_top_spine_check.isChecked()
588
- o['hide_right_spine'] = self.hide_right_spine_check.isChecked()
589
- o['transparent'] = self.transparent_check.isChecked()
590
- o['axis_width'] = self.axis_width_spin.value()
591
- o['facecolor'] = self.bg_color
796
+ o["grid"] = self.grid_check.isChecked()
797
+ o["hide_top_spine"] = self.hide_top_spine_check.isChecked()
798
+ o["hide_right_spine"] = self.hide_right_spine_check.isChecked()
799
+ o["transparent"] = self.transparent_check.isChecked()
800
+ o["axis_width"] = self.axis_width_spin.value()
801
+ o["facecolor"] = self.bg_color
592
802
 
593
803
  # Legend
594
- o['legend_visible'] = self.legend_visible_check.isChecked()
595
- o['legend_frameon'] = self.legend_frameon_check.isChecked()
596
- o['legend_loc'] = self.legend_loc_combo.currentText()
804
+ o["legend_visible"] = self.legend_visible_check.isChecked()
805
+ o["legend_frameon"] = self.legend_frameon_check.isChecked()
806
+ o["legend_loc"] = self.legend_loc_combo.currentText()
597
807
 
598
808
  # Dimensions
599
- o['fig_size'] = [self.fig_width_spin.value(), self.fig_height_spin.value()]
600
- o['dpi'] = self.dpi_spin.value()
809
+ o["fig_size"] = [self.fig_width_spin.value(), self.fig_height_spin.value()]
810
+ o["dpi"] = self.dpi_spin.value()
601
811
 
602
812
  def _apply_limits(self):
603
813
  """Apply axis limits."""
@@ -607,9 +817,9 @@ class QtEditorWindow:
607
817
  ymax = self.ymax_spin.value()
608
818
 
609
819
  if xmin < xmax:
610
- self.editor.current_overrides['xlim'] = [xmin, xmax]
820
+ self.editor.current_overrides["xlim"] = [xmin, xmax]
611
821
  if ymin < ymax:
612
- self.editor.current_overrides['ylim'] = [ymin, ymax]
822
+ self.editor.current_overrides["ylim"] = [ymin, ymax]
613
823
 
614
824
  self.editor._user_modified = True
615
825
  self._render_figure()
@@ -619,7 +829,7 @@ class QtEditorWindow:
619
829
  color = self.QtWidgets.QColorDialog.getColor()
620
830
  if color.isValid():
621
831
  self.bg_color = color.name()
622
- self.editor.current_overrides['facecolor'] = self.bg_color
832
+ self.editor.current_overrides["facecolor"] = self.bg_color
623
833
  self._render_figure()
624
834
 
625
835
  def _add_annotation(self):
@@ -631,16 +841,18 @@ class QtEditorWindow:
631
841
  x = self.annot_x_spin.value()
632
842
  y = self.annot_y_spin.value()
633
843
 
634
- if 'annotations' not in self.editor.current_overrides:
635
- self.editor.current_overrides['annotations'] = []
636
-
637
- self.editor.current_overrides['annotations'].append({
638
- 'type': 'text',
639
- 'text': text,
640
- 'x': x,
641
- 'y': y,
642
- 'fontsize': self.editor.current_overrides.get('axis_fontsize', 7),
643
- })
844
+ if "annotations" not in self.editor.current_overrides:
845
+ self.editor.current_overrides["annotations"] = []
846
+
847
+ self.editor.current_overrides["annotations"].append(
848
+ {
849
+ "type": "text",
850
+ "text": text,
851
+ "x": x,
852
+ "y": y,
853
+ "fontsize": self.editor.current_overrides.get("axis_fontsize", 7),
854
+ }
855
+ )
644
856
 
645
857
  self.annot_text_edit.clear()
646
858
  self._update_annotations_list()
@@ -650,7 +862,7 @@ class QtEditorWindow:
650
862
  def _remove_annotation(self):
651
863
  """Remove selected annotation."""
652
864
  row = self.annot_list.currentRow()
653
- annotations = self.editor.current_overrides.get('annotations', [])
865
+ annotations = self.editor.current_overrides.get("annotations", [])
654
866
 
655
867
  if row >= 0 and row < len(annotations):
656
868
  del annotations[row]
@@ -661,11 +873,11 @@ class QtEditorWindow:
661
873
  def _update_annotations_list(self):
662
874
  """Update the annotations list widget."""
663
875
  self.annot_list.clear()
664
- for ann in self.editor.current_overrides.get('annotations', []):
665
- if ann.get('type') == 'text':
666
- text = ann.get('text', '')[:20]
667
- x = ann.get('x', 0)
668
- y = ann.get('y', 0)
876
+ for ann in self.editor.current_overrides.get("annotations", []):
877
+ if ann.get("type") == "text":
878
+ text = ann.get("text", "")[:20]
879
+ x = ann.get("x", 0)
880
+ y = ann.get("y", 0)
669
881
  self.annot_list.addItem(f"{text} ({x:.2f}, {y:.2f})")
670
882
 
671
883
  def _render_figure(self):
@@ -677,68 +889,74 @@ class QtEditorWindow:
677
889
  mm_to_pt = 2.83465
678
890
 
679
891
  # Background
680
- if o.get('transparent', True):
681
- self.fig.patch.set_facecolor('none')
682
- self.ax.patch.set_facecolor('none')
892
+ if o.get("transparent", True):
893
+ self.fig.patch.set_facecolor("none")
894
+ self.ax.patch.set_facecolor("none")
683
895
  else:
684
- self.fig.patch.set_facecolor(o.get('facecolor', '#ffffff'))
685
- self.ax.patch.set_facecolor(o.get('facecolor', '#ffffff'))
896
+ self.fig.patch.set_facecolor(o.get("facecolor", "#ffffff"))
897
+ self.ax.patch.set_facecolor(o.get("facecolor", "#ffffff"))
686
898
 
687
899
  # Plot from CSV
688
900
  if self.editor.csv_data is not None:
689
901
  self._plot_from_csv(o)
690
902
  else:
691
- self.ax.text(0.5, 0.5, "No plot data available\n(CSV not found)",
692
- ha='center', va='center', transform=self.ax.transAxes)
903
+ self.ax.text(
904
+ 0.5,
905
+ 0.5,
906
+ "No plot data available\n(CSV not found)",
907
+ ha="center",
908
+ va="center",
909
+ transform=self.ax.transAxes,
910
+ )
693
911
 
694
912
  # Labels
695
- if o.get('title'):
696
- self.ax.set_title(o['title'], fontsize=o.get('title_fontsize', 8))
697
- if o.get('xlabel'):
698
- self.ax.set_xlabel(o['xlabel'], fontsize=o.get('axis_fontsize', 7))
699
- if o.get('ylabel'):
700
- self.ax.set_ylabel(o['ylabel'], fontsize=o.get('axis_fontsize', 7))
913
+ if o.get("title"):
914
+ self.ax.set_title(o["title"], fontsize=o.get("title_fontsize", 8))
915
+ if o.get("xlabel"):
916
+ self.ax.set_xlabel(o["xlabel"], fontsize=o.get("axis_fontsize", 7))
917
+ if o.get("ylabel"):
918
+ self.ax.set_ylabel(o["ylabel"], fontsize=o.get("axis_fontsize", 7))
701
919
 
702
920
  # Ticks
703
921
  self.ax.tick_params(
704
- axis='both',
705
- labelsize=o.get('tick_fontsize', 7),
706
- length=o.get('tick_length', 0.8) * mm_to_pt,
707
- width=o.get('tick_width', 0.2) * mm_to_pt,
708
- direction=o.get('tick_direction', 'out'),
922
+ axis="both",
923
+ labelsize=o.get("tick_fontsize", 7),
924
+ length=o.get("tick_length", 0.8) * mm_to_pt,
925
+ width=o.get("tick_width", 0.2) * mm_to_pt,
926
+ direction=o.get("tick_direction", "out"),
709
927
  )
710
928
 
711
- self.ax.xaxis.set_major_locator(MaxNLocator(nbins=o.get('n_ticks', 4)))
712
- self.ax.yaxis.set_major_locator(MaxNLocator(nbins=o.get('n_ticks', 4)))
929
+ self.ax.xaxis.set_major_locator(MaxNLocator(nbins=o.get("n_ticks", 4)))
930
+ self.ax.yaxis.set_major_locator(MaxNLocator(nbins=o.get("n_ticks", 4)))
713
931
 
714
932
  # Grid
715
- if o.get('grid'):
716
- self.ax.grid(True, linewidth=o.get('axis_width', 0.2) * mm_to_pt, alpha=0.3)
933
+ if o.get("grid"):
934
+ self.ax.grid(True, linewidth=o.get("axis_width", 0.2) * mm_to_pt, alpha=0.3)
717
935
 
718
936
  # Limits
719
- if o.get('xlim'):
720
- self.ax.set_xlim(o['xlim'])
721
- if o.get('ylim'):
722
- self.ax.set_ylim(o['ylim'])
937
+ if o.get("xlim"):
938
+ self.ax.set_xlim(o["xlim"])
939
+ if o.get("ylim"):
940
+ self.ax.set_ylim(o["ylim"])
723
941
 
724
942
  # Spines
725
- if o.get('hide_top_spine', True):
726
- self.ax.spines['top'].set_visible(False)
727
- if o.get('hide_right_spine', True):
728
- self.ax.spines['right'].set_visible(False)
943
+ if o.get("hide_top_spine", True):
944
+ self.ax.spines["top"].set_visible(False)
945
+ if o.get("hide_right_spine", True):
946
+ self.ax.spines["right"].set_visible(False)
729
947
 
730
948
  for spine in self.ax.spines.values():
731
- spine.set_linewidth(o.get('axis_width', 0.2) * mm_to_pt)
949
+ spine.set_linewidth(o.get("axis_width", 0.2) * mm_to_pt)
732
950
 
733
951
  # Annotations
734
- for ann in o.get('annotations', []):
735
- if ann.get('type') == 'text':
952
+ for ann in o.get("annotations", []):
953
+ if ann.get("type") == "text":
736
954
  self.ax.text(
737
- ann.get('x', 0.5),
738
- ann.get('y', 0.5),
739
- ann.get('text', ''),
955
+ ann.get("x", 0.5),
956
+ ann.get("y", 0.5),
957
+ ann.get("text", ""),
740
958
  transform=self.ax.transAxes,
741
- fontsize=ann.get('fontsize', o.get('axis_fontsize', 7)),
959
+ fontsize=ann.get("fontsize", o.get("axis_fontsize", 7)),
742
960
  )
743
961
 
744
962
  self.fig.tight_layout()
@@ -753,43 +971,49 @@ class QtEditorWindow:
753
971
  return
754
972
 
755
973
  df = self.editor.csv_data
756
- linewidth = o.get('linewidth', 1.0)
757
- legend_visible = o.get('legend_visible', True)
758
- legend_fontsize = o.get('legend_fontsize', 6)
759
- legend_frameon = o.get('legend_frameon', False)
760
- legend_loc = o.get('legend_loc', 'best')
974
+ linewidth = o.get("linewidth", 1.0)
975
+ legend_visible = o.get("legend_visible", True)
976
+ legend_fontsize = o.get("legend_fontsize", 6)
977
+ legend_frameon = o.get("legend_frameon", False)
978
+ legend_loc = o.get("legend_loc", "best")
761
979
 
762
- traces = o.get('traces', [])
980
+ traces = o.get("traces", [])
763
981
 
764
982
  if traces:
765
983
  for trace in traces:
766
- csv_cols = trace.get('csv_columns', {})
767
- x_col = csv_cols.get('x')
768
- y_col = csv_cols.get('y')
984
+ csv_cols = trace.get("csv_columns", {})
985
+ x_col = csv_cols.get("x")
986
+ y_col = csv_cols.get("y")
769
987
 
770
988
  if x_col in df.columns and y_col in df.columns:
771
989
  self.ax.plot(
772
990
  df[x_col],
773
991
  df[y_col],
774
- label=trace.get('label', trace.get('id', '')),
775
- color=trace.get('color'),
776
- linestyle=trace.get('linestyle', '-'),
777
- linewidth=trace.get('linewidth', linewidth),
992
+ label=trace.get("label", trace.get("id", "")),
993
+ color=trace.get("color"),
994
+ linestyle=trace.get("linestyle", "-"),
995
+ linewidth=trace.get("linewidth", linewidth),
778
996
  )
779
997
 
780
- if legend_visible and any(t.get('label') for t in traces):
781
- self.ax.legend(fontsize=legend_fontsize, frameon=legend_frameon, loc=legend_loc)
998
+ if legend_visible and any(t.get("label") for t in traces):
999
+ self.ax.legend(
1000
+ fontsize=legend_fontsize, frameon=legend_frameon, loc=legend_loc
1001
+ )
782
1002
  else:
783
1003
  cols = df.columns.tolist()
784
1004
  if len(cols) >= 2:
785
1005
  x_col = cols[0]
786
1006
  for y_col in cols[1:]:
787
1007
  try:
788
- self.ax.plot(df[x_col], df[y_col], label=str(y_col), linewidth=linewidth)
1008
+ self.ax.plot(
1009
+ df[x_col], df[y_col], label=str(y_col), linewidth=linewidth
1010
+ )
789
1011
  except Exception:
790
1012
  pass
791
1013
  if len(cols) > 2 and legend_visible:
792
- self.ax.legend(fontsize=legend_fontsize, frameon=legend_frameon, loc=legend_loc)
1014
+ self.ax.legend(
1015
+ fontsize=legend_fontsize, frameon=legend_frameon, loc=legend_loc
1016
+ )
793
1017
 
794
1018
  def _save_manual(self):
795
1019
  """Save to .manual.json."""
@@ -798,45 +1022,49 @@ class QtEditorWindow:
798
1022
  try:
799
1023
  self._collect_overrides()
800
1024
  manual_path = save_manual_overrides(
801
- self.editor.json_path,
802
- self.editor.current_overrides
1025
+ self.editor.json_path, self.editor.current_overrides
803
1026
  )
804
1027
  self.status_bar.showMessage(f"Saved: {manual_path.name}")
805
1028
  self.QtWidgets.QMessageBox.information(
806
- self.window, "Saved",
807
- f"Manual overrides saved to:\n{manual_path}"
1029
+ self.window, "Saved", f"Manual overrides saved to:\n{manual_path}"
808
1030
  )
809
1031
  except Exception as e:
810
1032
  self.QtWidgets.QMessageBox.critical(
811
- self.window, "Error",
812
- f"Failed to save: {e}"
1033
+ self.window, "Error", f"Failed to save: {e}"
813
1034
  )
814
1035
 
815
1036
  def _reset_overrides(self):
816
1037
  """Reset to initial overrides."""
817
1038
  reply = self.QtWidgets.QMessageBox.question(
818
- self.window, "Reset",
1039
+ self.window,
1040
+ "Reset",
819
1041
  "Reset all changes to original values?",
820
- self.QtWidgets.QMessageBox.StandardButton.Yes |
821
- self.QtWidgets.QMessageBox.StandardButton.No
822
- if hasattr(self.QtWidgets.QMessageBox, 'StandardButton')
823
- else self.QtWidgets.QMessageBox.Yes | self.QtWidgets.QMessageBox.No
1042
+ self.QtWidgets.QMessageBox.StandardButton.Yes
1043
+ | self.QtWidgets.QMessageBox.StandardButton.No
1044
+ if hasattr(self.QtWidgets.QMessageBox, "StandardButton")
1045
+ else self.QtWidgets.QMessageBox.Yes | self.QtWidgets.QMessageBox.No,
824
1046
  )
825
1047
 
826
- yes_val = (self.QtWidgets.QMessageBox.StandardButton.Yes
827
- if hasattr(self.QtWidgets.QMessageBox, 'StandardButton')
828
- else self.QtWidgets.QMessageBox.Yes)
1048
+ yes_val = (
1049
+ self.QtWidgets.QMessageBox.StandardButton.Yes
1050
+ if hasattr(self.QtWidgets.QMessageBox, "StandardButton")
1051
+ else self.QtWidgets.QMessageBox.Yes
1052
+ )
829
1053
 
830
1054
  if reply == yes_val:
831
- self.editor.current_overrides = copy.deepcopy(self.editor._initial_overrides)
1055
+ self.editor.current_overrides = copy.deepcopy(
1056
+ self.editor._initial_overrides
1057
+ )
832
1058
  self.editor._user_modified = False
833
1059
 
834
1060
  # Update UI
835
- self.title_edit.setText(self.editor.current_overrides.get('title', ''))
836
- self.xlabel_edit.setText(self.editor.current_overrides.get('xlabel', ''))
837
- self.ylabel_edit.setText(self.editor.current_overrides.get('ylabel', ''))
838
- self.linewidth_spin.setValue(self.editor.current_overrides.get('linewidth', 1.0))
839
- self.grid_check.setChecked(self.editor.current_overrides.get('grid', False))
1061
+ self.title_edit.setText(self.editor.current_overrides.get("title", ""))
1062
+ self.xlabel_edit.setText(self.editor.current_overrides.get("xlabel", ""))
1063
+ self.ylabel_edit.setText(self.editor.current_overrides.get("ylabel", ""))
1064
+ self.linewidth_spin.setValue(
1065
+ self.editor.current_overrides.get("linewidth", 1.0)
1066
+ )
1067
+ self.grid_check.setChecked(self.editor.current_overrides.get("grid", False))
840
1068
 
841
1069
  self._update_annotations_list()
842
1070
  self._render_figure()
@@ -845,19 +1073,22 @@ class QtEditorWindow:
845
1073
  def _export_png(self):
846
1074
  """Export current view to PNG."""
847
1075
  filepath, _ = self.QtWidgets.QFileDialog.getSaveFileName(
848
- self.window, "Export PNG",
849
- str(self.editor.json_path.with_suffix('.edited.png')),
850
- "PNG files (*.png);;All files (*)"
1076
+ self.window,
1077
+ "Export PNG",
1078
+ str(self.editor.json_path.with_suffix(".edited.png")),
1079
+ "PNG files (*.png);;All files (*)",
851
1080
  )
852
1081
 
853
1082
  if filepath:
854
1083
  self._collect_overrides()
855
1084
  o = self.editor.current_overrides
856
- dpi = o.get('dpi', 300)
1085
+ dpi = o.get("dpi", 300)
857
1086
 
858
1087
  self.fig.savefig(
859
- filepath, dpi=dpi, bbox_inches='tight',
860
- transparent=o.get('transparent', True)
1088
+ filepath,
1089
+ dpi=dpi,
1090
+ bbox_inches="tight",
1091
+ transparent=o.get("transparent", True),
861
1092
  )
862
1093
  self.status_bar.showMessage(f"Exported: {Path(filepath).name}")
863
1094