scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +25 -10
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/audio/README.md +52 -0
- scitex/audio/__init__.py +384 -0
- scitex/audio/__main__.py +129 -0
- scitex/audio/_tts.py +334 -0
- scitex/audio/engines/__init__.py +44 -0
- scitex/audio/engines/base.py +275 -0
- scitex/audio/engines/elevenlabs_engine.py +143 -0
- scitex/audio/engines/gtts_engine.py +162 -0
- scitex/audio/engines/pyttsx3_engine.py +131 -0
- scitex/audio/mcp_server.py +757 -0
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dev/plt/__init__.py +272 -0
- scitex/dev/plt/plot_mpl_axhline.py +28 -0
- scitex/dev/plt/plot_mpl_axhspan.py +28 -0
- scitex/dev/plt/plot_mpl_axvline.py +28 -0
- scitex/dev/plt/plot_mpl_axvspan.py +28 -0
- scitex/dev/plt/plot_mpl_bar.py +29 -0
- scitex/dev/plt/plot_mpl_barh.py +29 -0
- scitex/dev/plt/plot_mpl_boxplot.py +28 -0
- scitex/dev/plt/plot_mpl_contour.py +31 -0
- scitex/dev/plt/plot_mpl_contourf.py +31 -0
- scitex/dev/plt/plot_mpl_errorbar.py +30 -0
- scitex/dev/plt/plot_mpl_eventplot.py +28 -0
- scitex/dev/plt/plot_mpl_fill.py +30 -0
- scitex/dev/plt/plot_mpl_fill_between.py +31 -0
- scitex/dev/plt/plot_mpl_hexbin.py +28 -0
- scitex/dev/plt/plot_mpl_hist.py +28 -0
- scitex/dev/plt/plot_mpl_hist2d.py +28 -0
- scitex/dev/plt/plot_mpl_imshow.py +29 -0
- scitex/dev/plt/plot_mpl_pcolormesh.py +31 -0
- scitex/dev/plt/plot_mpl_pie.py +29 -0
- scitex/dev/plt/plot_mpl_plot.py +29 -0
- scitex/dev/plt/plot_mpl_quiver.py +31 -0
- scitex/dev/plt/plot_mpl_scatter.py +28 -0
- scitex/dev/plt/plot_mpl_stackplot.py +31 -0
- scitex/dev/plt/plot_mpl_stem.py +29 -0
- scitex/dev/plt/plot_mpl_step.py +29 -0
- scitex/dev/plt/plot_mpl_violinplot.py +28 -0
- scitex/dev/plt/plot_sns_barplot.py +29 -0
- scitex/dev/plt/plot_sns_boxplot.py +29 -0
- scitex/dev/plt/plot_sns_heatmap.py +28 -0
- scitex/dev/plt/plot_sns_histplot.py +29 -0
- scitex/dev/plt/plot_sns_kdeplot.py +29 -0
- scitex/dev/plt/plot_sns_lineplot.py +31 -0
- scitex/dev/plt/plot_sns_scatterplot.py +29 -0
- scitex/dev/plt/plot_sns_stripplot.py +29 -0
- scitex/dev/plt/plot_sns_swarmplot.py +29 -0
- scitex/dev/plt/plot_sns_violinplot.py +29 -0
- scitex/dev/plt/plot_stx_bar.py +29 -0
- scitex/dev/plt/plot_stx_barh.py +29 -0
- scitex/dev/plt/plot_stx_box.py +28 -0
- scitex/dev/plt/plot_stx_boxplot.py +28 -0
- scitex/dev/plt/plot_stx_conf_mat.py +28 -0
- scitex/dev/plt/plot_stx_contour.py +31 -0
- scitex/dev/plt/plot_stx_ecdf.py +28 -0
- scitex/dev/plt/plot_stx_errorbar.py +30 -0
- scitex/dev/plt/plot_stx_fill_between.py +31 -0
- scitex/dev/plt/plot_stx_fillv.py +28 -0
- scitex/dev/plt/plot_stx_heatmap.py +28 -0
- scitex/dev/plt/plot_stx_image.py +28 -0
- scitex/dev/plt/plot_stx_imshow.py +28 -0
- scitex/dev/plt/plot_stx_joyplot.py +28 -0
- scitex/dev/plt/plot_stx_kde.py +28 -0
- scitex/dev/plt/plot_stx_line.py +28 -0
- scitex/dev/plt/plot_stx_mean_ci.py +28 -0
- scitex/dev/plt/plot_stx_mean_std.py +28 -0
- scitex/dev/plt/plot_stx_median_iqr.py +28 -0
- scitex/dev/plt/plot_stx_raster.py +28 -0
- scitex/dev/plt/plot_stx_rectangle.py +28 -0
- scitex/dev/plt/plot_stx_scatter.py +29 -0
- scitex/dev/plt/plot_stx_shaded_line.py +29 -0
- scitex/dev/plt/plot_stx_violin.py +28 -0
- scitex/dev/plt/plot_stx_violinplot.py +28 -0
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/fig/__init__.py +352 -0
- scitex/{vis → fig}/backend/__init__.py +3 -3
- scitex/{vis/backend/export.py → fig/backend/_export.py} +1 -1
- scitex/{vis/backend/parser.py → fig/backend/_parser.py} +2 -4
- scitex/{vis/backend/render.py → fig/backend/_render.py} +1 -1
- scitex/{vis → fig}/canvas.py +16 -4
- scitex/{vis → fig}/editor/__init__.py +0 -0
- scitex/{vis → fig}/editor/_dearpygui_editor.py +450 -304
- scitex/fig/editor/_defaults.py +300 -0
- scitex/fig/editor/_edit.py +751 -0
- scitex/{vis → fig}/editor/_flask_editor.py +8 -8
- scitex/{vis → fig}/editor/_mpl_editor.py +63 -48
- scitex/{vis → fig}/editor/_qt_editor.py +391 -160
- scitex/{vis → fig}/editor/_tkinter_editor.py +146 -89
- scitex/fig/editor/flask_editor/__init__.py +21 -0
- scitex/fig/editor/flask_editor/_bbox.py +1276 -0
- scitex/fig/editor/flask_editor/_core.py +624 -0
- scitex/fig/editor/flask_editor/_plotter.py +601 -0
- scitex/fig/editor/flask_editor/_renderer.py +739 -0
- scitex/{vis/editor/flask_editor/utils.py → fig/editor/flask_editor/_utils.py} +13 -14
- scitex/{vis → fig}/editor/flask_editor/templates/__init__.py +6 -6
- scitex/fig/editor/flask_editor/templates/_html.py +834 -0
- scitex/fig/editor/flask_editor/templates/_scripts.py +3136 -0
- scitex/fig/editor/flask_editor/templates/_styles.py +1346 -0
- scitex/{vis → fig}/io/__init__.py +18 -6
- scitex/fig/io/_bundle.py +973 -0
- scitex/{vis/io/canvas.py → fig/io/_canvas.py} +9 -5
- scitex/{vis/io/data.py → fig/io/_data.py} +14 -10
- scitex/{vis/io/directory.py → fig/io/_directory.py} +7 -4
- scitex/{vis/io/export.py → fig/io/_export.py} +16 -13
- scitex/{vis/io/load.py → fig/io/_load.py} +2 -2
- scitex/{vis/io/panel.py → fig/io/_panel.py} +22 -14
- scitex/{vis/io/save.py → fig/io/_save.py} +1 -1
- scitex/{vis → fig}/model/__init__.py +8 -8
- scitex/{vis/model/annotations.py → fig/model/_annotations.py} +3 -5
- scitex/{vis/model/axes.py → fig/model/_axes.py} +2 -2
- scitex/{vis/model/figure.py → fig/model/_figure.py} +1 -1
- scitex/{vis/model/guides.py → fig/model/_guides.py} +2 -2
- scitex/{vis/model/plot.py → fig/model/_plot.py} +3 -5
- scitex/{vis/model/plot_types.py → fig/model/_plot_types.py} +0 -0
- scitex/{vis/model/styles.py → fig/model/_styles.py} +1 -1
- scitex/{vis → fig}/utils/__init__.py +3 -3
- scitex/{vis/utils/defaults.py → fig/utils/_defaults.py} +1 -2
- scitex/{vis/utils/validate.py → fig/utils/_validate.py} +3 -9
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +12 -27
- scitex/io/_bundle.py +434 -0
- scitex/io/_flush.py +5 -2
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +104 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +11 -14
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +6 -11
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +7 -4
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
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- scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
- scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
- scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
- scitex/scholar/url_finder/translators/individual/plos.py +9 -12
- scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
- scitex/scholar/url_finder/translators/individual/primo.py +3 -1
- scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
- scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
- scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
- scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
- scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
- scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
- scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
- scitex/scholar/url_finder/translators/individual/sora.py +3 -1
- scitex/scholar/url_finder/translators/individual/springer.py +15 -11
- scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
- scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
- scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
- scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
- scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
- scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
- scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
- scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
- scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
- scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
- scitex/scholar/utils/text/_TextNormalizer.py +249 -176
- scitex/scholar/utils/validation/DOIValidator.py +31 -28
- scitex/scholar/utils/validation/__init__.py +0 -0
- scitex/scholar/utils/validation/validate_library_dois.py +61 -57
- scitex/scholar/zotero/__init__.py +1 -1
- scitex/security/cli.py +7 -20
- scitex/security/github.py +45 -32
- scitex/session/__init__.py +8 -9
- scitex/session/_decorator.py +49 -42
- scitex/session/_lifecycle.py +39 -39
- scitex/session/_manager.py +24 -20
- scitex/sh/__init__.py +4 -3
- scitex/sh/_execute.py +10 -7
- scitex/sh/_security.py +3 -3
- scitex/sh/_types.py +2 -3
- scitex/stats/__init__.py +174 -6
- scitex/stats/_schema.py +42 -569
- scitex/stats/auto/__init__.py +188 -0
- scitex/stats/auto/_context.py +331 -0
- scitex/stats/auto/_formatting.py +679 -0
- scitex/stats/auto/_rules.py +901 -0
- scitex/stats/auto/_selector.py +554 -0
- scitex/stats/auto/_styles.py +721 -0
- scitex/stats/correct/__init__.py +4 -4
- scitex/stats/correct/_correct_bonferroni.py +43 -34
- scitex/stats/correct/_correct_fdr.py +14 -40
- scitex/stats/correct/_correct_fdr_.py +39 -46
- scitex/stats/correct/_correct_holm.py +14 -32
- scitex/stats/correct/_correct_sidak.py +36 -21
- scitex/stats/descriptive/_circular.py +20 -21
- scitex/stats/descriptive/_describe.py +19 -5
- scitex/stats/descriptive/_nan.py +5 -7
- scitex/stats/descriptive/_real.py +4 -3
- scitex/stats/effect_sizes/__init__.py +10 -11
- scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
- scitex/stats/effect_sizes/_cohens_d.py +30 -31
- scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
- scitex/stats/effect_sizes/_eta_squared.py +23 -27
- scitex/stats/effect_sizes/_prob_superiority.py +18 -21
- scitex/stats/io/__init__.py +29 -0
- scitex/stats/io/_bundle.py +156 -0
- scitex/stats/posthoc/__init__.py +3 -3
- scitex/stats/posthoc/_dunnett.py +75 -55
- scitex/stats/posthoc/_games_howell.py +61 -43
- scitex/stats/posthoc/_tukey_hsd.py +42 -34
- scitex/stats/power/__init__.py +2 -2
- scitex/stats/power/_power.py +56 -56
- scitex/stats/tests/__init__.py +1 -1
- scitex/stats/tests/correlation/__init__.py +1 -1
- scitex/stats/tests/correlation/_test_pearson.py +28 -38
- scitex/stats/utils/__init__.py +14 -17
- scitex/stats/utils/_effect_size.py +85 -78
- scitex/stats/utils/_formatters.py +49 -43
- scitex/stats/utils/_normalizers.py +7 -14
- scitex/stats/utils/_power.py +56 -56
- scitex/str/__init__.py +1 -0
- scitex/str/_clean_path.py +3 -3
- scitex/str/_factor_out_digits.py +86 -58
- scitex/str/_format_plot_text.py +180 -111
- scitex/str/_latex.py +19 -19
- scitex/str/_latex_fallback.py +9 -10
- scitex/str/_parse.py +3 -6
- scitex/str/_print_debug.py +13 -13
- scitex/str/_printc.py +2 -0
- scitex/str/_search.py +3 -3
- scitex/template/.legacy/_clone_project.py +9 -13
- scitex/template/__init__.py +10 -2
- scitex/template/_clone_project.py +7 -2
- scitex/template/_copy.py +1 -0
- scitex/template/_customize.py +3 -6
- scitex/template/_git_strategy.py +2 -3
- scitex/template/_rename.py +1 -0
- scitex/template/clone_pip_project.py +6 -7
- scitex/template/clone_research.py +7 -10
- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/__init__.py +4 -0
- scitex/tex/_export.py +890 -0
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/METADATA +14 -10
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/RECORD +1149 -985
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/io/memo.md +0 -2827
- scitex/plt/_subplots/TODO.md +0 -53
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +0 -537
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +0 -1499
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +0 -431
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/__init__.py +0 -177
- scitex/vis/editor/_defaults.py +0 -244
- scitex/vis/editor/_edit.py +0 -378
- scitex/vis/editor/flask_editor/__init__.py +0 -21
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/core.py +0 -152
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/html.py +0 -295
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- scitex/vis/editor/flask_editor/templates/styles.py +0 -549
- /scitex/{vis → fig}/README.md +0 -0
- /scitex/{vis → fig}/docs/CANVAS_ARCHITECTURE.md +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.3.dist-info}/licenses/LICENSE +0 -0
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assert_valid_axis(
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assert_valid_axis(
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f"xx length ({len(xx)}) must match values_2d length ({expected_len})"
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assert_valid_axis(
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axis, "First argument must be a matplotlib axis or scitex axis wrapper"
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f"xx length ({len(xx)}) must match values_2d length ({expected_len})"
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)
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central = values_2d
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Parameters
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----------
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axis : plt.Axes or scitex.plt._subplots.
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axis : plt.Axes or scitex.plt._subplots.AxisWrapper
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Matplotlib axes or scitex axis wrapper to plot on
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conf_mat_2d : Union[np.ndarray, pd.DataFrame], shape (n_classes, n_classes)
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2D confusion matrix data (true labels × predicted labels)
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Returns
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Union[plt.Axes, Tuple[plt.Axes, float]] or Union[scitex.plt._subplots.
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Union[plt.Axes, Tuple[plt.Axes, float]] or Union[scitex.plt._subplots.AxisWrapper, Tuple[scitex.plt._subplots.AxisWrapper, float]]
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Axes object and optionally balanced accuracy
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Example
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@@ -81,7 +81,9 @@ def stx_conf_mat(
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"""
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assert_valid_axis(
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assert_valid_axis(
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axis, "First argument must be a matplotlib axis or scitex axis wrapper"
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)
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if not isinstance(conf_mat_2d, pd.DataFrame):
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# EOF
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scitex/plt/ax/_plot/_stx_ecdf.py
CHANGED
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"""Empirical Cumulative Distribution Function (ECDF) plotting."""
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import warnings
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from typing import Any, Tuple, Union
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import numpy as np
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import pandas as pd
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from matplotlib.axes import Axes
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+
from scitex import logging
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15
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from scitex.pd._force_df import force_df as scitex_pd_force_df
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Imshows an two-dimensional array with theese two conditions:
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2) The second dimension represents the y dim, from bottom to top
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Parameters
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----------
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ax : matplotlib.axes.Axes or scitex.plt._subplots.
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ax : matplotlib.axes.Axes or scitex.plt._subplots.AxisWrapper
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The axis to plot on
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The 2D array to display
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Maximum data value for colormap scaling, by default None
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**kwargs
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Additional keyword arguments passed to ax.imshow()
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Returns
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-------
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matplotlib.axes.Axes or scitex.plt._subplots.
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matplotlib.axes.Axes or scitex.plt._subplots.AxisWrapper
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The axis with the image plotted
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"""
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from ....plt.utils import assert_valid_axis
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def stx_joyplot(
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def stx_joyplot(
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ax, arrays, overlap=0.5, fill_alpha=0.7, line_alpha=1.0, colors=None, **kwargs
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):
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"""
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Create a joyplot (ridgeline plot) on the provided axes.
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matplotlib.axes.Axes
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The axes with the joyplot
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"""
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assert_valid_axis(
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ax, "First argument must be a matplotlib axis or scitex axis wrapper"
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)
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# Convert dict to list of arrays (values only)
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if isinstance(arrays, dict):
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arrays = list(arrays.values())
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# Add sample size per distribution to label if provided (show range if variable)
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# Default colors from scitex palette
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colors = [
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HEX["blue"],
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HEX["
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HEX["blue"],
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HEX["red"],
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HEX["green"],
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HEX["yellow"],
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HEX["purple"],
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HEX["orange"],
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+
HEX["lightblue"],
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+
HEX["pink"],
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]
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n_ridges = len(arrays)
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@@ -92,14 +105,23 @@ def stx_joyplot(ax, arrays, overlap=0.5, fill_alpha=0.7, line_alpha=1.0,
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baseline = i * (1.0 - overlap)
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# Scale density to fit nicely
|
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-
scaled_density =
|
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+
scaled_density = (
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+
kdes[i] / max_density * ridge_height if max_density > 0 else kdes[i]
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+
)
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# Fill
|
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ax.fill_between(
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ax.fill_between(
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x,
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baseline,
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baseline + scaled_density,
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facecolor=color,
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+
edgecolor="none",
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alpha=fill_alpha,
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+
)
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# Line on top
|
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-
ax.plot(
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-
|
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+
ax.plot(
|
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x, baseline + scaled_density, color=color, alpha=line_alpha, linewidth=1.0
|
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+
)
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# Set y limits
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ax.set_ylim(-0.1, n_ridges * (1.0 - overlap) + ridge_height)
|
|
@@ -31,7 +31,7 @@ def stx_raster(
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apply_set_n_ticks=True,
|
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n_xticks=4,
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n_yticks=None,
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|
-
**kwargs
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+
**kwargs,
|
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35
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|
):
|
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36
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|
"""
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37
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|
Create a raster plot using eventplot with custom labels and colors.
|
|
@@ -72,7 +72,9 @@ def stx_raster(
|
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72
72
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df : pandas.DataFrame
|
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73
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DataFrame with time indices and channel events.
|
|
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|
"""
|
|
75
|
-
assert_valid_axis(
|
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+
assert_valid_axis(
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ax, "First argument must be a matplotlib axis or scitex axis wrapper"
|
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+
)
|
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76
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# Format spike_times_list data
|
|
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80
|
spike_times_list = _ensure_list(spike_times_list)
|
|
@@ -99,13 +101,24 @@ def stx_raster(
|
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|
99
101
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if np.isscalar(lineoffsets):
|
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100
102
|
lineoffsets = [lineoffsets]
|
|
101
103
|
if len(lineoffsets) < len(spike_times_list):
|
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102
|
-
lineoffsets = list(lineoffsets) + list(
|
|
104
|
+
lineoffsets = list(lineoffsets) + list(
|
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105
|
+
range(len(lineoffsets), len(spike_times_list))
|
|
106
|
+
)
|
|
103
107
|
|
|
104
108
|
# Plotting as eventplot using spike_times_list with proper positioning
|
|
105
|
-
for ii, (pos, color, offset) in enumerate(
|
|
109
|
+
for ii, (pos, color, offset) in enumerate(
|
|
110
|
+
zip(spike_times_list, colors, lineoffsets)
|
|
111
|
+
):
|
|
106
112
|
label = _define_label(labels, ii)
|
|
107
|
-
ax.eventplot(
|
|
108
|
-
|
|
113
|
+
ax.eventplot(
|
|
114
|
+
pos,
|
|
115
|
+
lineoffsets=offset,
|
|
116
|
+
linelengths=linelengths,
|
|
117
|
+
orientation=orientation,
|
|
118
|
+
colors=color,
|
|
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|
+
label=label,
|
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120
|
+
**kwargs,
|
|
121
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+
)
|
|
109
122
|
|
|
110
123
|
# Apply set_n_ticks for cleaner axes if requested
|
|
111
124
|
if apply_set_n_ticks:
|
|
@@ -114,20 +127,20 @@ def stx_raster(
|
|
|
114
127
|
# For categorical y-axis (trials/channels), use appropriate tick count
|
|
115
128
|
if n_yticks is None:
|
|
116
129
|
n_yticks = min(len(spike_times_list), 8) # Max 8 ticks for readability
|
|
117
|
-
|
|
130
|
+
|
|
118
131
|
# Only apply if we have reasonable numeric ranges
|
|
119
132
|
try:
|
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120
133
|
x_range = ax.get_xlim()
|
|
121
134
|
y_range = ax.get_ylim()
|
|
122
|
-
|
|
135
|
+
|
|
123
136
|
# Apply x-ticks if we have a reasonable numeric range
|
|
124
137
|
if x_range[1] - x_range[0] > 0:
|
|
125
138
|
set_n_ticks(ax, n_xticks=n_xticks, n_yticks=None)
|
|
126
|
-
|
|
139
|
+
|
|
127
140
|
# Apply y-ticks only if we don't have categorical labels
|
|
128
141
|
if labels is None and y_range[1] - y_range[0] > 0:
|
|
129
142
|
set_n_ticks(ax, n_xticks=None, n_yticks=n_yticks)
|
|
130
|
-
|
|
143
|
+
|
|
131
144
|
except Exception:
|
|
132
145
|
# Skip set_n_ticks if there are issues (e.g., categorical data)
|
|
133
146
|
pass
|
|
@@ -137,7 +150,9 @@ def stx_raster(
|
|
|
137
150
|
ax.legend()
|
|
138
151
|
|
|
139
152
|
# Return spike_times in a useful format
|
|
140
|
-
spike_times_digital_df = _event_times_to_digital_df(
|
|
153
|
+
spike_times_digital_df = _event_times_to_digital_df(
|
|
154
|
+
spike_times_list, time, lineoffsets
|
|
155
|
+
)
|
|
141
156
|
|
|
142
157
|
return ax, spike_times_digital_df
|
|
143
158
|
|
|
@@ -61,8 +61,8 @@ def stx_rectangle(ax, xx, yy, ww, hh, **kwargs):
|
|
|
61
61
|
matplotlib.axes.Axes.add_patch : Method used to add the patch
|
|
62
62
|
"""
|
|
63
63
|
# Default to no edge for cleaner publication figures
|
|
64
|
-
if
|
|
65
|
-
kwargs[
|
|
64
|
+
if "edgecolor" not in kwargs and "ec" not in kwargs:
|
|
65
|
+
kwargs["edgecolor"] = "none"
|
|
66
66
|
ax.add_patch(Rectangle((xx, yy), ww, hh, **kwargs))
|
|
67
67
|
return ax
|
|
68
68
|
|
|
@@ -53,10 +53,12 @@ def _plot_single_shaded_line(
|
|
|
53
53
|
df : pd.DataFrame
|
|
54
54
|
DataFrame with x, y_lower, y_middle, y_upper columns.
|
|
55
55
|
"""
|
|
56
|
-
assert_valid_axis(
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
)
|
|
56
|
+
assert_valid_axis(
|
|
57
|
+
axis, "First argument must be a matplotlib axis or scitex axis wrapper"
|
|
58
|
+
)
|
|
59
|
+
assert len(xx) == len(y_middle) == len(y_lower) == len(y_upper), (
|
|
60
|
+
"All arrays must have the same length"
|
|
61
|
+
)
|
|
60
62
|
|
|
61
63
|
label = kwargs.pop("label", None)
|
|
62
64
|
axis.plot(xx, y_middle, color=color, alpha=alpha, label=label, **kwargs)
|
|
@@ -104,10 +106,12 @@ def _plot_shaded_line(
|
|
|
104
106
|
results : list of pd.DataFrame
|
|
105
107
|
List of DataFrames with plot data.
|
|
106
108
|
"""
|
|
107
|
-
assert_valid_axis(
|
|
108
|
-
|
|
109
|
-
|
|
110
|
-
)
|
|
109
|
+
assert_valid_axis(
|
|
110
|
+
axis, "First argument must be a matplotlib axis or scitex axis wrapper"
|
|
111
|
+
)
|
|
112
|
+
assert len(xs) == len(ys_lower) == len(ys_middle) == len(ys_upper), (
|
|
113
|
+
"All input lists must have the same length"
|
|
114
|
+
)
|
|
111
115
|
|
|
112
116
|
results = []
|
|
113
117
|
colors = color
|
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@@ -199,9 +203,9 @@ def stx_shaded_line(
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if is_single:
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-
assert (
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-
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)
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assert len(xs) == len(ys_lower) == len(ys_middle) == len(ys_upper), (
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"All arrays must have the same length for single line plot"
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)
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return _plot_single_shaded_line(
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axis, xs, ys_lower, ys_middle, ys_upper, color=color, **kwargs
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@@ -105,7 +105,9 @@ def sns_plot_violin(ax, data=None, x=None, y=None, hue=None, half=False, **kwarg
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ax : matplotlib.axes.Axes or scitex.plt._subplots.AxisWrapper
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The axes object with the plot
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"""
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-
assert_valid_axis(
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assert_valid_axis(
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ax, "First argument must be a matplotlib axis or scitex axis wrapper"
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)
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if not half:
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# Standard violin plot
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@@ -17,21 +17,23 @@ from ....plt.utils import assert_valid_axis
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def add_marginal_ax(axis, place, size=0.2, pad=0.1):
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"""
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Add a marginal axis to the specified side of an existing axis.
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Arguments:
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axis (matplotlib.axes.Axes or scitex.plt._subplots.AxisWrapper): The axis to which a marginal axis will be added.
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place (str): Where to place the marginal axis ('top', 'right', 'bottom', or 'left').
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size (float, optional): Fractional size of the marginal axis relative to the main axis. Defaults to 0.2.
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pad (float, optional): Padding between the axes. Defaults to 0.1.
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-
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Returns:
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matplotlib.axes.Axes: The newly created marginal axis.
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"""
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assert_valid_axis(
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assert_valid_axis(
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axis, "First argument must be a matplotlib axis or scitex axis wrapper"
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)
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divider = make_axes_locatable(axis)
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size_perc_str = f"{size*100}%"
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+
size_perc_str = f"{size * 100}%"
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if place in ["left", "right"]:
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size = 1.0 / size
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@@ -18,7 +18,9 @@ import numpy as np
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from typing import Optional, Tuple
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def detect_scale_factor(
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def detect_scale_factor(
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values: np.ndarray, threshold: float = 1e-2
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) -> Tuple[int, bool]:
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"""
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Detect appropriate power of 10 to factor out from axis values.
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@@ -97,7 +99,7 @@ def format_scale_factor(power: int) -> str:
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return f"×10$^{{{power}}}$"
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def auto_scale_axis(ax, axis: str =
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def auto_scale_axis(ax, axis: str = "both", threshold: float = 1e-2) -> None:
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"""
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Automatically scale axis to factor out common powers of 10.
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@@ -155,16 +157,16 @@ def auto_scale_axis(ax, axis: str = 'both', threshold: float = 1e-2) -> None:
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return
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# Create scaling factor
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-
scale_factor = 10
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scale_factor = 10**power
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# Update tick formatter to show scaled values
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def format_func(value, pos):
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scaled_value = value / scale_factor
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# Format with appropriate precision
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if abs(scaled_value) < 10:
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return f
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return f"{scaled_value:.1f}"
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else:
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return f
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return f"{scaled_value:.0f}"
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set_formatter(ticker.FuncFormatter(format_func))
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@@ -173,22 +175,24 @@ def auto_scale_axis(ax, axis: str = 'both', threshold: float = 1e-2) -> None:
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scale_str = format_scale_factor(power)
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# Check if label already has units in brackets
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if
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if "[" in current_label and "]" in current_label:
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# Insert scale factor before the closing bracket
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# e.g., "Density [a.u.]" → "Density [×10⁻³ a.u.]"
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label_parts = current_label.rsplit(
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label_parts = current_label.rsplit("]", 1)
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new_label = f"{label_parts[0]} {scale_str}]{label_parts[1]}"
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else:
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# Append scale factor in brackets
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# e.g., "Density" → "Density [×10⁻³]"
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new_label =
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new_label = (
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f"{current_label} [{scale_str}]" if current_label else f"[{scale_str}]"
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)
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set_label(new_label)
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# Apply to requested axes
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if axis in [
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if axis in ["x", "both"]:
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scale_axis_impl(ax, is_x_axis=True)
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if axis in [
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if axis in ["y", "both"]:
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scale_axis_impl(ax, is_x_axis=False)
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scitex/plt/ax/_style/_extend.py
CHANGED
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@@ -29,7 +29,9 @@ def extend(axis, x_ratio=1.0, y_ratio=1.0):
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AssertionError: If the first argument is not a valid axis.
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"""
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assert_valid_axis(
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assert_valid_axis(
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axis, "First argument must be a matplotlib axis or scitex axis wrapper"
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)
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assert x_ratio != 0, "x_ratio must not be 0."
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assert y_ratio != 0, "y_ratio must not be 0."
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@@ -16,15 +16,17 @@ from ....plt.utils import assert_valid_axis
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def force_aspect(axis, aspect=1):
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"""
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Forces aspect ratio of an axis based on the extent of the image.
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+
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Arguments:
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axis (matplotlib.axes.Axes or scitex.plt._subplots.AxisWrapper): The axis to adjust.
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aspect (float, optional): The aspect ratio to apply. Defaults to 1.
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-
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+
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Returns:
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matplotlib.axes.Axes or scitex.plt._subplots.AxisWrapper: The axis with adjusted aspect ratio.
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"""
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assert_valid_axis(
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assert_valid_axis(
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axis, "First argument must be a matplotlib axis or scitex axis wrapper"
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)
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im = axis.get_images()
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@@ -89,12 +89,12 @@ def format_label_auto(text: str) -> str:
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# Pattern to match units in parentheses at the end of the string
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# e.g., "Time (s)" or "Frequency (Hz)"
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pattern = r
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+
pattern = r"\s*\(([^)]+)\)\s*$"
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match = re.search(pattern, text)
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if match:
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unit = match.group(1)
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-
label = text[:match.start()].strip()
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+
label = text[: match.start()].strip()
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return f"{label} [{unit}]"
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return text
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