scitex 2.5.0__py3-none-any.whl → 2.7.3__py3-none-any.whl

scitex/plt/io/_layered_bundle.py

@@ -0,0 +1,1343 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+# Timestamp: "2025-12-14 (ywatanabe)"
+# File: /home/ywatanabe/proj/scitex-code/src/scitex/plt/io/_layered_bundle.py
+
+"""
+Layered .pltz Bundle I/O - New schema with spec/style/geometry separation.
+
+Bundle structure:
+    plot.pltz.d/
+        spec.json           # Semantic: WHAT to plot (canonical)
+        style.json          # Appearance: HOW it looks (canonical)
+        data.csv            # Raw data (immutable)
+        exports/
+            overview.png    # Preview image
+            overview.svg    # Vector preview
+            hitmap.png      # Hit testing image
+        cache/
+            geometry_px.json    # Derived: WHERE in pixels (regenerable)
+            render_manifest.json # Render metadata (dpi, hashes)
+
+Design Principles:
+- spec.json + style.json = source of truth (edit these)
+- cache/* = derived, can be deleted and regenerated
+- Canonical units: ratio (0-1) for axes bbox, mm for panel size
+"""
+
+import json
+import hashlib
+from pathlib import Path
+from typing import Any, Dict, List, Optional, Tuple
+from dataclasses import asdict
+
+from scitex import logging
+from scitex.plt.styles import get_default_dpi, get_preview_dpi
+from scitex.schema import (
+    # Spec classes
+    PltzSpec, PltzTraceSpec, PltzAxesItem, PltzAxesLimits, PltzAxesLabels,
+    PltzDataSource, BboxRatio, BboxPx,
+    # Style classes
+    PltzStyle, PltzTheme, PltzFont, PltzSize, PltzTraceStyle, PltzLegendSpec,
+    # Geometry classes
+    PltzGeometry, PltzRenderedAxes, PltzRenderedArtist, PltzRenderManifest,
+    # Version constants
+    PLOT_SPEC_VERSION, PLOT_STYLE_VERSION, PLOT_GEOMETRY_VERSION,
+)
+
+logger = logging.getLogger()
+
+__all__ = [
+    "save_layered_pltz_bundle",
+    "load_layered_pltz_bundle",
+    "merge_layered_bundle",
+    "is_layered_bundle",
+]
+
+
+def is_layered_bundle(bundle_dir: Path) -> bool:
+    """Check if a bundle uses the new layered format."""
+    return (bundle_dir / "spec.json").exists()
+
+
+def save_layered_pltz_bundle(
+    fig,
+    bundle_dir: Path,
+    basename: str = "plot",
+    dpi: Optional[int] = None,
+    csv_df=None,
+) -> None:
+    """
+    Save matplotlib figure as layered .pltz bundle.
+
+    Parameters
+    ----------
+    fig : matplotlib.figure.Figure
+        The figure to save.
+    bundle_dir : Path
+        Output directory (e.g., plot.pltz.d).
+    basename : str
+        Base filename for exports.
+    dpi : int, optional
+        DPI for raster exports. If None, uses get_default_dpi() from config.
+    csv_df : DataFrame, optional
+        Data to embed as CSV.
+    """
+    # Resolve DPI from config if not specified
+    if dpi is None:
+        dpi = get_default_dpi()
+    import numpy as np
+    import tempfile
+    import warnings
+    from PIL import Image as PILImage
+
+    bundle_dir = Path(bundle_dir)
+    bundle_dir.mkdir(parents=True, exist_ok=True)
+
+    # Create subdirectories
+    exports_dir = bundle_dir / "exports"
+    cache_dir = bundle_dir / "cache"
+    exports_dir.mkdir(exist_ok=True)
+    cache_dir.mkdir(exist_ok=True)
+
+    # Extract figure dimensions
+    fig_width_inch, fig_height_inch = fig.get_size_inches()
+
+    # === Build PltzSpec (semantic) ===
+    axes_items = []
+    traces = []
+    extracted_data = {}
+
+    for ax_idx, ax in enumerate(fig.axes):
+        bbox = ax.get_position()
+        ax_id = f"ax{ax_idx}"
+
+        # Create axes item
+        ax_item = PltzAxesItem(
+            id=ax_id,
+            bbox=BboxRatio(
+                x0=round(bbox.x0, 4),
+                y0=round(bbox.y0, 4),
+                width=round(bbox.width, 4),
+                height=round(bbox.height, 4),
+                space="panel",
+            ),
+            limits=PltzAxesLimits(
+                x=list(ax.get_xlim()),
+                y=list(ax.get_ylim()),
+            ),
+            labels=PltzAxesLabels(
+                xlabel=ax.get_xlabel() or None,
+                ylabel=ax.get_ylabel() or None,
+                title=ax.get_title() or None,
+            ),
+        )
+        axes_items.append(ax_item)
+
+        # Extract traces from lines
+        for line_idx, line in enumerate(ax.get_lines()):
+            label = line.get_label()
+            if label is None or label.startswith('_'):
+                label = f'series_{line_idx}'
+
+            trace_id = f"{ax_id}-line-{line_idx}"
+            xdata, ydata = line.get_data()
+
+            if len(xdata) > 0:
+                x_col = f"{ax_id}_trace-{trace_id}_x"
+                y_col = f"{ax_id}_trace-{trace_id}_y"
+                extracted_data[x_col] = np.array(xdata)
+                extracted_data[y_col] = np.array(ydata)
+
+                trace = PltzTraceSpec(
+                    id=trace_id,
+                    type="line",
+                    axes_index=ax_idx,
+                    x_col=x_col,
+                    y_col=y_col,
+                    label=label,
+                )
+                traces.append(trace)
+
+    # Handle CSV data - prefer extracted data (captures all matplotlib artists)
+    columns = []
+    csv_hash = None
+    if extracted_data:
+        # Use extracted data from matplotlib artists (captures axhline, etc.)
+        import pandas as pd
+        max_len = max(len(v) for v in extracted_data.values())
+        padded = {}
+        for k, v in extracted_data.items():
+            # Convert to float for NaN padding compatibility
+            v_float = np.array(v, dtype=float)
+            if len(v_float) < max_len:
+                padded[k] = np.pad(v_float, (0, max_len - len(v_float)), constant_values=np.nan)
+            else:
+                padded[k] = v_float
+        csv_df = pd.DataFrame(padded)
+        columns = list(csv_df.columns)
+        csv_str = csv_df.to_csv(index=False)
+        csv_hash = f"sha256:{hashlib.sha256(csv_str.encode()).hexdigest()[:16]}"
+    elif csv_df is not None:
+        # Fallback to provided CSV if no extracted data
+        columns = list(csv_df.columns)
+        csv_str = csv_df.to_csv(index=False)
+        csv_hash = f"sha256:{hashlib.sha256(csv_str.encode()).hexdigest()[:16]}"
+
+    # Create spec
+    spec = PltzSpec(
+        plot_id=basename,
+        data=PltzDataSource(
+            csv=f"{basename}.csv",
+            format="wide",
+            hash=csv_hash,
+        ),
+        axes=axes_items,
+        traces=traces,
+    )
+
+    # === Build PltzStyle (appearance) ===
+    # Detect theme from figure
+    theme_mode = "light"
+    if hasattr(fig, '_scitex_theme'):
+        theme_mode = fig._scitex_theme
+
+    trace_styles = []
+    for ax_idx, ax in enumerate(fig.axes):
+        for line_idx, line in enumerate(ax.get_lines()):
+            label = line.get_label()
+            if label and not label.startswith('_'):
+                # Get line color
+                import matplotlib.colors as mcolors
+                color = line.get_color()
+                if isinstance(color, (list, tuple)):
+                    color = mcolors.to_hex(color)
+
+                trace_id = f"ax{ax_idx}-line-{line_idx}"
+                trace_styles.append(PltzTraceStyle(
+                    trace_id=trace_id,
+                    color=color,
+                    linewidth=line.get_linewidth(),
+                    alpha=line.get_alpha(),
+                ))
+
+    # Extract legend configuration from first axes with legend
+    legend_spec = PltzLegendSpec(visible=True, location="best")
+    for ax in fig.axes:
+        legend = ax.get_legend()
+        if legend is not None:
+            # Extract legend location
+            # matplotlib legend._loc can be int or string
+            loc = legend._loc
+            loc_map = {
+                0: "best", 1: "upper right", 2: "upper left", 3: "lower left",
+                4: "lower right", 5: "right", 6: "center left", 7: "center right",
+                8: "lower center", 9: "upper center", 10: "center",
+            }
+            if isinstance(loc, int):
+                location = loc_map.get(loc, "best")
+            else:
+                location = str(loc) if loc else "best"
+
+            # If location is "best", determine actual position from rendered bbox
+            if location == "best":
+                try:
+                    # Get the actual rendered position
+                    bbox = legend.get_window_extent(fig.canvas.get_renderer())
+                    ax_bbox = ax.get_position()
+                    fig_width, fig_height = fig.get_size_inches() * fig.dpi
+
+                    # Calculate legend center relative to axes
+                    legend_center_x = (bbox.x0 + bbox.x1) / 2
+                    legend_center_y = (bbox.y0 + bbox.y1) / 2
+                    ax_center_x = (ax_bbox.x0 + ax_bbox.x1) / 2 * fig_width
+                    ax_center_y = (ax_bbox.y0 + ax_bbox.y1) / 2 * fig_height
+
+                    # Determine quadrant
+                    is_right = legend_center_x > ax_center_x
+                    is_upper = legend_center_y > ax_center_y
+
+                    if is_upper and is_right:
+                        location = "upper right"
+                    elif is_upper and not is_right:
+                        location = "upper left"
+                    elif not is_upper and is_right:
+                        location = "lower right"
+                    else:
+                        location = "lower left"
+                except Exception:
+                    pass  # Keep "best" if we can't determine
+
+            # Extract other legend properties
+            legend_spec = PltzLegendSpec(
+                visible=legend.get_visible(),
+                location=location,
+                frameon=legend.get_frame_on(),
+                fontsize=legend._fontsize if hasattr(legend, '_fontsize') else None,
+                ncols=legend._ncols if hasattr(legend, '_ncols') else 1,
+                title=legend.get_title().get_text() if legend.get_title() else None,
+            )
+            break  # Use first legend found
+
+    style = PltzStyle(
+        theme=PltzTheme(
+            mode=theme_mode,
+            colors={
+                "background": "transparent",
+                "axes_bg": "white" if theme_mode == "light" else "transparent",
+                "text": "black" if theme_mode == "light" else "#e8e8e8",
+                "spine": "black" if theme_mode == "light" else "#e8e8e8",
+                "tick": "black" if theme_mode == "light" else "#e8e8e8",
+            },
+        ),
+        size=PltzSize(
+            width_mm=round(fig_width_inch * 25.4, 1),
+            height_mm=round(fig_height_inch * 25.4, 1),
+        ),
+        font=PltzFont(family="sans-serif", size_pt=8.0),
+        traces=trace_styles,
+        legend=legend_spec,
+    )
+
+    # === Save exports and track coordinate transformations ===
+    #
+    # Cropping Pipeline:
+    #
+    #   ┌──────────────────────────────┐
+    #   │  original_figure_size_px     │  ← matplotlib figure canvas
+    #   │  ┌────────────────────────┐  │     (where bbox_px are measured)
+    #   │  │ tight_bbox             │  │
+    #   │  │  ┌──────────────────┐  │  │
+    #   │  │  │ final_image_px   │  │  │  ← exported PNG (what user sees)
+    #   │  │  └──────────────────┘  │  │
+    #   │  └────────────────────────┘  │
+    #   └──────────────────────────────┘
+    #
+    # To convert: final_coord = original_coord - total_crop_offset
+    #
+    # IMPORTANT: Use fig.dpi for coordinate calculations, NOT export dpi
+    # extract_selectable_regions uses fig.dpi for all bbox calculations
+    fig_dpi = fig.dpi
+    display_fig_size_px = [
+        int(fig.get_figwidth() * fig_dpi),
+        int(fig.get_figheight() * fig_dpi),
+    ]
+
+    # Get matplotlib's tight bounding box (what bbox_inches='tight' crops to)
+    # Note: get_tightbbox returns values in INCHES, not pixels
+    fig.canvas.draw()  # Ensure renderer is ready
+    renderer = fig.canvas.get_renderer()
+    tight_bbox_inches = fig.get_tightbbox(renderer)
+
+    # Convert from inches to display pixels (using fig.dpi, NOT export dpi)
+    tight_bbox_display_px = {
+        "x0": tight_bbox_inches.x0 * fig_dpi,
+        "y0": tight_bbox_inches.y0 * fig_dpi,
+        "x1": tight_bbox_inches.x1 * fig_dpi,
+        "y1": tight_bbox_inches.y1 * fig_dpi,
+    }
+
+    # Convert from matplotlib display coords (y=0 at bottom)
+    # to image coords (y=0 at top)
+    tight_bbox_in_image_coords = {
+        "left": tight_bbox_display_px["x0"],
+        "upper": display_fig_size_px[1] - tight_bbox_display_px["y1"],  # Flip y
+        "right": tight_bbox_display_px["x1"],
+        "lower": display_fig_size_px[1] - tight_bbox_display_px["y0"],
+    }
+
+    # Scale factor: export_dpi / fig_dpi (to scale from display coords to export PNG coords)
+    dpi_scale = dpi / fig_dpi
+
+    with tempfile.TemporaryDirectory() as tmp_dir:
+        tmp_path = Path(tmp_dir)
+
+        with warnings.catch_warnings():
+            warnings.filterwarnings('ignore', message='.*tight_layout.*')
+
+            # Save PNG at full figure size (crop function will handle tight cropping)
+            # This ensures coordinate transformations are accurate
+            png_path = exports_dir / f"{basename}.png"
+            fig.savefig(png_path, dpi=dpi, format='png', transparent=True)
+
+            # Save SVG with tight bbox (separate concern, no coord issues)
+            svg_path = exports_dir / f"{basename}.svg"
+            fig.savefig(svg_path, bbox_inches='tight', format='svg')
+
+            # Generate hitmap
+            from scitex.plt.utils._hitmap import (
+                apply_hitmap_colors, restore_original_colors,
+                extract_path_data, extract_selectable_regions,
+                HITMAP_BACKGROUND_COLOR, HITMAP_AXES_COLOR
+            )
+
+            original_props, color_map, groups = apply_hitmap_colors(fig)
+
+            # Store and set hitmap colors for hitmap generation
+            saved_fig_facecolor = fig.patch.get_facecolor()
+            saved_ax_facecolors = []
+            for ax in fig.axes:
+                saved_ax_facecolors.append(ax.get_facecolor())
+                ax.set_facecolor(HITMAP_BACKGROUND_COLOR)
+                for spine in ax.spines.values():
+                    spine.set_color(HITMAP_AXES_COLOR)
+
+            fig.patch.set_facecolor(HITMAP_BACKGROUND_COLOR)
+
+            # Save hitmap at full figure size (will crop with same box as main PNG)
+            hitmap_path = exports_dir / f"{basename}_hitmap.png"
+            fig.savefig(hitmap_path, dpi=dpi, format='png',
+                       facecolor=HITMAP_BACKGROUND_COLOR)
+
+            # Restore colors
+            restore_original_colors(original_props)
+            fig.patch.set_facecolor(saved_fig_facecolor)
+            for i, ax in enumerate(fig.axes):
+                ax.set_facecolor(saved_ax_facecolors[i])
+
+            # Apply additional margin cropping (removes transparent edges)
+            margin_crop_box = None
+            try:
+                from scitex.plt.utils._crop import crop
+
+                _, margin_crop_box = crop(
+                    str(png_path), output_path=str(png_path),
+                    overwrite=True, margin=12, verbose=False, return_offset=True,
+                )
+
+                crop(str(hitmap_path), output_path=str(hitmap_path),
+                     overwrite=True, crop_box=(
+                         margin_crop_box['left'],
+                         margin_crop_box['upper'],
+                         margin_crop_box['right'],
+                         margin_crop_box['lower'],
+                     ), verbose=False)
+            except Exception as e:
+                logger.debug(f"Crop failed: {e}")
+
+    # === Coordinate transformation pipeline ===
+    #
+    # Strategy: Since we save at full figure size (no bbox_inches='tight'),
+    # the crop function's crop_box IS the total offset from original figure to final PNG.
+    #
+    # We extract coordinates at export DPI so they match the saved PNG directly.
+
+    # Temporarily set fig.dpi to export DPI for coordinate extraction
+    saved_fig_dpi = fig.dpi
+    fig.set_dpi(dpi)
+    fig.canvas.draw()  # Redraw at new DPI
+
+    # crop_box is the total offset from full figure to final PNG
+    # (crop_box['left'], crop_box['upper']) = top-left corner of crop region
+    total_offset_left = margin_crop_box["left"] if margin_crop_box else 0
+    total_offset_upper = margin_crop_box["upper"] if margin_crop_box else 0
+
+    # === Build PltzGeometry (cache) ===
+    # Extract at export DPI so coords are in full figure space (matches saved PNG before crop)
+    path_data = extract_path_data(fig)
+    selectable_regions = extract_selectable_regions(fig)
+
+    # Restore original DPI
+    fig.set_dpi(saved_fig_dpi)
+
+    # Get final image size (what user sees)
+    with PILImage.open(png_path) as img:
+        final_image_size_px = list(img.size)
+
+    # Adjust coordinates: subtract total offset (both tight_bbox and margin_crop)
+    # No DPI scaling needed since we extracted at export DPI
+    selectable_regions = _adjust_coords_for_offset(
+        selectable_regions, total_offset_left, total_offset_upper
+    )
+    path_data = _adjust_path_data_for_offset(
+        path_data, total_offset_left, total_offset_upper
+    )
+
+    rendered_axes = []
+    for ax_idx, ax_data in enumerate(path_data.get("axes", [])):
+        bbox_data = ax_data.get("bbox_px", {})
+        rendered_axes.append(PltzRenderedAxes(
+            id=f"ax{ax_idx}",
+            xlim=ax_data.get("xlim", [0, 1]),
+            ylim=ax_data.get("ylim", [0, 1]),
+            bbox_px=BboxPx(
+                x0=bbox_data.get("x0", 0),
+                y0=bbox_data.get("y0", 0),
+                width=bbox_data.get("width", bbox_data.get("x1", 0) - bbox_data.get("x0", 0)),
+                height=bbox_data.get("height", bbox_data.get("y1", 0) - bbox_data.get("y0", 0)),
+            ),
+        ))
+
+    rendered_artists = []
+    for artist in path_data.get("artists", []):
+        bbox_data = artist.get("bbox_px", {})
+        rendered_artists.append(PltzRenderedArtist(
+            id=str(artist.get("id", "")),
+            type=artist.get("type", "unknown"),
+            axes_index=artist.get("axes_index", 0),
+            bbox_px=BboxPx(
+                x0=bbox_data.get("x0", 0),
+                y0=bbox_data.get("y0", 0),
+                width=bbox_data.get("width", bbox_data.get("x1", 0) - bbox_data.get("x0", 0)),
+                height=bbox_data.get("height", bbox_data.get("y1", 0) - bbox_data.get("y0", 0)),
+            ) if bbox_data else None,
+            path_px=artist.get("path_px"),
+        ))
+
+    geometry = PltzGeometry(
+        source_hash=csv_hash or "",
+        figure_px=final_image_size_px,  # Final cropped image size
+        dpi=dpi,  # Export DPI (stored for consumers)
+        axes=rendered_axes,
+        artists=rendered_artists,
+        hit_regions={
+            "strategy": "hybrid",
+            "hit_map": f"{basename}_hitmap.png",
+            "color_map": {str(k): v for k, v in color_map.items()},
+            "groups": groups,
+            # Store DPI info for consumers that need to retrieve from data
+            "fig_dpi": fig_dpi,  # Original matplotlib fig.dpi
+            "export_dpi": dpi,   # Export DPI used for PNG
+            "dpi_scale": dpi_scale,  # export_dpi / fig_dpi
+        },
+        selectable_regions=selectable_regions,
+        # Note: crop_box is now None because all coordinates are already adjusted
+        # to final_image space (no further transformation needed by consumers)
+        crop_box=None,
+    )
+
+    # === Save all JSON files ===
+    # spec.json
+    spec_path = bundle_dir / "spec.json"
+    with open(spec_path, "w") as f:
+        json.dump({
+            "schema": {"name": "scitex.plt.spec", "version": PLOT_SPEC_VERSION},
+            **asdict(spec),
+        }, f, indent=2, default=str)
+
+    # style.json
+    style_path = bundle_dir / "style.json"
+    with open(style_path, "w") as f:
+        json.dump({
+            "schema": {"name": "scitex.plt.style", "version": PLOT_STYLE_VERSION},
+            **asdict(style),
+        }, f, indent=2, default=str)
+
+    # cache/geometry_px.json
+    geometry_path = cache_dir / "geometry_px.json"
+    with open(geometry_path, "w") as f:
+        json.dump({
+            "schema": {"name": "scitex.plt.geometry", "version": PLOT_GEOMETRY_VERSION},
+            "_comment": "CACHE - can be deleted and regenerated from spec + style",
+            **asdict(geometry),
+        }, f, indent=2, default=str)
+
+    # cache/render_manifest.json
+    spec_hash = hashlib.sha256(open(spec_path, "rb").read()).hexdigest()[:16]
+    style_hash = hashlib.sha256(open(style_path, "rb").read()).hexdigest()[:16]
+    manifest = PltzRenderManifest(
+        source_hash=f"{spec_hash}:{style_hash}",
+        panel_size_mm=[round(fig_width_inch * 25.4, 1), round(fig_height_inch * 25.4, 1)],
+        dpi=dpi,
+        render_px=final_image_size_px,
+        overview_png=f"exports/{basename}.png",
+        overview_svg=f"exports/{basename}.svg",
+        hitmap_png=f"exports/{basename}_hitmap.png",
+    )
+    manifest_path = cache_dir / "render_manifest.json"
+    with open(manifest_path, "w") as f:
+        json.dump({
+            "schema": {"name": "scitex.plt.render_manifest", "version": PLOT_GEOMETRY_VERSION},
+            **asdict(manifest),
+        }, f, indent=2, default=str)
+
+    # Save CSV
+    if csv_df is not None:
+        csv_path = bundle_dir / f"{basename}.csv"
+        csv_df.to_csv(csv_path, index=False)
+
+    # Generate overview showing main image and hitmap side by side
+    _generate_pltz_overview(exports_dir, basename)
+
+    # Generate dynamic README.md
+    _generate_pltz_readme(bundle_dir, basename, spec, style, geometry, manifest)
+
+    logger.debug(f"Saved layered pltz bundle: {bundle_dir}")
+
+
+def _generate_pltz_overview(exports_dir: Path, basename: str) -> None:
+    """Generate comprehensive overview with plot, hitmap, overlay, bboxes, and JSON info.
+
+    Args:
+        exports_dir: Path to exports directory.
+        basename: Base filename for the bundle.
+    """
+    import matplotlib.pyplot as plt
+    import matplotlib.patches as patches
+    from PIL import Image
+    import warnings
+    import numpy as np
+
+    bundle_dir = exports_dir.parent
+    png_path = exports_dir / f"{basename}.png"
+    hitmap_path = exports_dir / f"{basename}_hitmap.png"
+
+    if not png_path.exists():
+        return
+
+    try:
+        main_img = Image.open(png_path)
+        img_width, img_height = main_img.size
+        has_hitmap = hitmap_path.exists()
+
+        # Load JSON files for displaying info
+        spec_data = {}
+        style_data = {}
+        geometry_data = {}
+        manifest_data = {}
+
+        spec_path = bundle_dir / "spec.json"
+        style_path = bundle_dir / "style.json"
+        geometry_path = bundle_dir / "cache" / "geometry_px.json"
+        manifest_path = bundle_dir / "cache" / "render_manifest.json"
+
+        if spec_path.exists():
+            with open(spec_path, "r") as f:
+                spec_data = json.load(f)
+        if style_path.exists():
+            with open(style_path, "r") as f:
+                style_data = json.load(f)
+        if geometry_path.exists():
+            with open(geometry_path, "r") as f:
+                geometry_data = json.load(f)
+        if manifest_path.exists():
+            with open(manifest_path, "r") as f:
+                manifest_data = json.load(f)
+
+        # Get DPI and panel size for mm scaler
+        dpi = manifest_data.get("dpi", get_default_dpi())
+        panel_size_mm = manifest_data.get("panel_size_mm", [80, 68])
+
+        # Create figure with 2 rows, 3 columns layout
+        # Row 1: Plot | Hitmap | Overlay
+        # Row 2: Bboxes | JSON Info | mm Scaler
+        fig = plt.figure(figsize=(18, 12), facecolor="white")
+        gs = fig.add_gridspec(2, 3, hspace=0.3, wspace=0.2)
+
+        # === Row 1: Images ===
+        # 1. Main Plot
+        ax_plot = fig.add_subplot(gs[0, 0])
+        ax_plot.set_title("Plot", fontweight="bold", fontsize=11)
+        ax_plot.imshow(main_img)
+        ax_plot.axis("off")
+
+        # 2. Hitmap with ID labels
+        ax_hitmap = fig.add_subplot(gs[0, 1])
+        ax_hitmap.set_title("Hit Regions", fontweight="bold", fontsize=11)
+        if has_hitmap:
+            hitmap_img = Image.open(hitmap_path)
+            ax_hitmap.imshow(hitmap_img)
+
+            # Add ID labels from hit_regions color_map
+            color_map = geometry_data.get("hit_regions", {}).get("color_map", {})
+            artists = geometry_data.get("artists", [])
+
+            # Note: bbox_px coordinates are already in final image space
+            for idx, artist in enumerate(artists):
+                bbox = artist.get("bbox_px", {})
+                if bbox:
+                    # Get center of bbox for label placement
+                    x0 = bbox.get("x0", 0)
+                    y0 = bbox.get("y0", 0)
+                    width = bbox.get("width", 0)
+                    height = bbox.get("height", 0)
+                    cx, cy = x0 + width / 2, y0 + height / 2
+
+                    # Find label from color_map (color_map IDs are 1-indexed)
+                    color_map_id = str(idx + 1)
+                    label = f"artist_{idx}"
+                    if color_map_id in color_map:
+                        label = color_map[color_map_id].get("label", label)
+
+                    ax_hitmap.text(cx, cy, label, fontsize=8, ha="center", va="center",
+                                  color="white", fontweight="bold",
+                                  bbox=dict(boxstyle="round,pad=0.2", facecolor="black", alpha=0.7))
+        else:
+            ax_hitmap.text(0.5, 0.5, "No hitmap", ha="center", va="center",
+                          transform=ax_hitmap.transAxes)
+        ax_hitmap.axis("off")
+
+        # 3. Overlay (plot + hitmap with transparency)
+        ax_overlay = fig.add_subplot(gs[0, 2])
+        ax_overlay.set_title("Overlay (Plot + Hit)", fontweight="bold", fontsize=11)
+        ax_overlay.imshow(main_img)
+        if has_hitmap:
+            hitmap_img = Image.open(hitmap_path).convert("RGBA")
+            hitmap_array = np.array(hitmap_img)
+            # Create semi-transparent overlay
+            hitmap_array[:, :, 3] = (hitmap_array[:, :, 3] * 0.5).astype(np.uint8)
+            ax_overlay.imshow(hitmap_array, alpha=0.5)
+        ax_overlay.axis("off")
+
+        # === Row 2: Details ===
+        # 4. Bboxes visualization
+        ax_bboxes = fig.add_subplot(gs[1, 0])
+        ax_bboxes.set_title("Element Bboxes", fontweight="bold", fontsize=11)
+        ax_bboxes.imshow(main_img)
+
+        # Note: bbox_px coordinates are already in final image space
+        # (adjusted during save_layered_pltz_bundle), so no offset needed
+
+        # Draw bboxes from geometry
+        colors = ["red", "blue", "green", "orange", "purple", "cyan"]
+        selectable = geometry_data.get("selectable_regions", {})
+
+        for ax_idx, ax_region in enumerate(selectable.get("axes", [])):
+            color = colors[ax_idx % len(colors)]
+
+            # Title bbox
+            if "title" in ax_region:
+                bbox = ax_region["title"].get("bbox_px", [])
+                if len(bbox) == 4:
+                    _draw_bbox(ax_bboxes, bbox, color, "title")
+
+            # xlabel bbox
+            if "xlabel" in ax_region:
+                bbox = ax_region["xlabel"].get("bbox_px", [])
+                if len(bbox) == 4:
+                    _draw_bbox(ax_bboxes, bbox, color, "xlabel")
+
+            # ylabel bbox
+            if "ylabel" in ax_region:
+                bbox = ax_region["ylabel"].get("bbox_px", [])
+                if len(bbox) == 4:
+                    _draw_bbox(ax_bboxes, bbox, color, "ylabel")
+
+            # xaxis spine
+            if "xaxis" in ax_region and "spine" in ax_region["xaxis"]:
+                bbox = ax_region["xaxis"]["spine"].get("bbox_px", [])
+                if len(bbox) == 4:
+                    _draw_bbox(ax_bboxes, bbox, "gray", "xaxis", lw=1)
+
+            # yaxis spine
+            if "yaxis" in ax_region and "spine" in ax_region["yaxis"]:
+                bbox = ax_region["yaxis"]["spine"].get("bbox_px", [])
+                if len(bbox) == 4:
+                    _draw_bbox(ax_bboxes, bbox, "gray", "yaxis", lw=1)
+
+            # legend bbox
+            if "legend" in ax_region:
+                bbox = ax_region["legend"].get("bbox_px", [])
+                if len(bbox) == 4:
+                    _draw_bbox(ax_bboxes, bbox, "magenta", "legend")
+
+        ax_bboxes.axis("off")
+
+        # 5. JSON Info
+        ax_json = fig.add_subplot(gs[1, 1])
+        ax_json.set_title("Bundle Info (depth=2)", fontweight="bold", fontsize=11)
+        ax_json.axis("off")
+
+        # Format JSON summary with limited depth
+        json_text = _format_json_summary(
+            {"spec": spec_data, "style": style_data},
+            max_depth=2
+        )
+        ax_json.text(0.02, 0.98, json_text, transform=ax_json.transAxes,
+                    fontsize=7, fontfamily="monospace", verticalalignment="top",
+                    bbox=dict(boxstyle="round", facecolor="wheat", alpha=0.5))
+
+        # 6. mm Scaler
+        ax_scale = fig.add_subplot(gs[1, 2])
+        ax_scale.set_title("Size & Scale (mm)", fontweight="bold", fontsize=11)
+
+        # Show the image with mm scale bars
+        ax_scale.imshow(main_img, extent=[0, panel_size_mm[0], panel_size_mm[1], 0])
+
+        # Add grid lines every 10mm
+        for x in range(0, int(panel_size_mm[0]) + 1, 10):
+            ax_scale.axvline(x, color='gray', linewidth=0.5, alpha=0.5)
+            if x > 0:
+                ax_scale.text(x, -1, f"{x}", ha="center", fontsize=7)
+        for y in range(0, int(panel_size_mm[1]) + 1, 10):
+            ax_scale.axhline(y, color='gray', linewidth=0.5, alpha=0.5)
+            if y > 0:
+                ax_scale.text(-1, y, f"{y}", ha="right", va="center", fontsize=7)
+
+        ax_scale.set_xlabel("mm", fontsize=9)
+        ax_scale.set_ylabel("mm", fontsize=9)
+        ax_scale.set_xlim(-3, panel_size_mm[0] + 1)
+        ax_scale.set_ylim(panel_size_mm[1] + 1, -3)
+
+        # Add size text
+        size_text = f"Panel: {panel_size_mm[0]:.1f} × {panel_size_mm[1]:.1f} mm\nDPI: {dpi}\nPixels: {img_width} × {img_height}"
+        ax_scale.text(panel_size_mm[0] * 0.95, panel_size_mm[1] * 0.95, size_text,
+                     ha="right", va="bottom", fontsize=8,
+                     bbox=dict(boxstyle="round", facecolor="white", alpha=0.8))
+
+        fig.suptitle(f"Overview: {basename}", fontsize=14, fontweight="bold", y=0.98)
+
+        overview_path = exports_dir / f"{basename}_overview.png"
+        with warnings.catch_warnings():
+            warnings.filterwarnings("ignore", message=".*tight_layout.*")
+            fig.savefig(overview_path, dpi=get_preview_dpi(), bbox_inches="tight", facecolor="white")
+        plt.close(fig)
+
+    except Exception as e:
+        logger.debug(f"Could not generate pltz overview: {e}")
+        import traceback
+        logger.debug(traceback.format_exc())
+
+
+def _generate_pltz_readme(
+    bundle_dir: Path,
+    basename: str,
+    spec: "PltzSpec",
+    style: "PltzStyle",
+    geometry: "PltzGeometry",
+    manifest: "PltzRenderManifest",
+) -> None:
+    """Generate a dynamic README.md describing the bundle.
+
+    Parameters
+    ----------
+    bundle_dir : Path
+        Path to the bundle directory.
+    basename : str
+        Base filename for the bundle.
+    spec : PltzSpec
+        The plot specification.
+    style : PltzStyle
+        The plot style.
+    geometry : PltzGeometry
+        The rendered geometry.
+    manifest : PltzRenderManifest
+        The render manifest.
+    """
+    from datetime import datetime
+
+    # Count elements
+    n_axes = len(spec.axes) if spec.axes else 0
+    n_traces = len(spec.traces) if spec.traces else 0
+
+    # Get size info
+    width_mm = style.size.width_mm if style.size else 0
+    height_mm = style.size.height_mm if style.size else 0
+    dpi = manifest.dpi
+    render_px = manifest.render_px
+
+    readme_content = f"""# {basename}.pltz.d
+
+> SciTeX Layered Plot Bundle - Auto-generated README
+
+## Overview
+
+![Plot Overview](exports/{basename}_overview.png)
+
+## Bundle Structure
+
+```
+{basename}.pltz.d/
+├── spec.json           # WHAT to plot (semantic, editable)
+├── style.json          # HOW it looks (appearance, editable)
+├── {basename}.csv      # Raw data (immutable)
+├── exports/
+│   ├── {basename}.png          # Main plot image
+│   ├── {basename}.svg          # Vector version
+│   ├── {basename}_hitmap.png   # Hit detection image
+│   └── {basename}_overview.png # Visual summary
+├── cache/
+│   ├── geometry_px.json       # Pixel coordinates (regenerable)
+│   └── render_manifest.json   # Render metadata
+└── README.md           # This file
+```
+
+## Plot Information
+
+| Property | Value |
+|----------|-------|
+| Plot ID | `{spec.plot_id}` |
+| Axes | {n_axes} |
+| Traces | {n_traces} |
+| Size | {width_mm:.1f} × {height_mm:.1f} mm |
+| DPI | {dpi} |
+| Pixels | {render_px[0]} × {render_px[1]} |
+| Theme | {style.theme.mode if style.theme else 'light'} |
+
+## Coordinate System
+
+The bundle uses a layered coordinate system:
+
+1. **spec.json + style.json** = Source of truth (edit these)
+2. **cache/** = Derived data (can be deleted and regenerated)
+
+### Coordinate Transformation Pipeline
+
+```
+Original Figure (at export DPI)
+         │
+         ▼ crop_box offset
+    ┌─────────────────┐
+    │  Final PNG      │  ← bbox_px coordinates are in this space
+    │  ({render_px[0]} × {render_px[1]})  │
+    └─────────────────┘
+```
+
+**Formula**: `final_coords = original_coords - crop_offset`
+
+## Usage
+
+### Python
+
+```python
+import scitex as stx
+
+# Load the bundle
+bundle = stx.plt.io.load_layered_pltz_bundle("{bundle_dir}")
+
+# Access components
+spec = bundle["spec"]       # What to plot
+style = bundle["style"]     # How it looks
+geometry = bundle["geometry"]  # Where in pixels
+```
+
+### Editing
+
+Edit `spec.json` to change:
+- Axis labels, titles, limits
+- Trace data columns
+- Data source
+
+Edit `style.json` to change:
+- Colors, line widths
+- Font sizes
+- Theme (light/dark)
+
+After editing, regenerate cache with:
+```python
+stx.plt.io.regenerate_cache("{bundle_dir}")
+```
+
+---
+
+*Generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}*
+*Schema: scitex.plt v{PLOT_SPEC_VERSION}*
+"""
+
+    readme_path = bundle_dir / "README.md"
+    with open(readme_path, "w") as f:
+        f.write(readme_content)
+
+
+def _adjust_coords_for_offset(
+    selectable_regions: Dict[str, Any],
+    offset_left: float,
+    offset_upper: float,
+) -> Dict[str, Any]:
+    """Adjust bbox_px coordinates by subtracting offset.
+
+    Used when coordinates are already in PNG space (extracted at export DPI).
+
+    Parameters
+    ----------
+    selectable_regions : dict
+        The selectable_regions dict (already in PNG coords).
+    offset_left : float
+        Total offset from left edge to subtract.
+    offset_upper : float
+        Total offset from top edge to subtract.
+
+    Returns
+    -------
+    dict
+        selectable_regions with adjusted coordinates.
+    """
+    import copy
+    result = copy.deepcopy(selectable_regions)
+
+    def adjust_bbox(bbox: List[float]) -> List[float]:
+        """Subtract offset from [x0, y0, x1, y1] bbox."""
+        return [
+            bbox[0] - offset_left,
+            bbox[1] - offset_upper,
+            bbox[2] - offset_left,
+            bbox[3] - offset_upper,
+        ]
+
+    for ax_region in result.get("axes", []):
+        # Adjust title, xlabel, ylabel
+        for key in ["title", "xlabel", "ylabel"]:
+            if key in ax_region and "bbox_px" in ax_region[key]:
+                ax_region[key]["bbox_px"] = adjust_bbox(ax_region[key]["bbox_px"])
+
+        # Adjust xaxis elements
+        if "xaxis" in ax_region:
+            xaxis = ax_region["xaxis"]
+            if xaxis.get("spine") and "bbox_px" in xaxis["spine"]:
+                xaxis["spine"]["bbox_px"] = adjust_bbox(xaxis["spine"]["bbox_px"])
+            for tick in xaxis.get("ticks", []):
+                if "bbox_px" in tick:
+                    tick["bbox_px"] = adjust_bbox(tick["bbox_px"])
+            for label in xaxis.get("ticklabels", []):
+                if "bbox_px" in label:
+                    label["bbox_px"] = adjust_bbox(label["bbox_px"])
+
+        # Adjust yaxis elements
+        if "yaxis" in ax_region:
+            yaxis = ax_region["yaxis"]
+            if yaxis.get("spine") and "bbox_px" in yaxis["spine"]:
+                yaxis["spine"]["bbox_px"] = adjust_bbox(yaxis["spine"]["bbox_px"])
+            for tick in yaxis.get("ticks", []):
+                if "bbox_px" in tick:
+                    tick["bbox_px"] = adjust_bbox(tick["bbox_px"])
+            for label in yaxis.get("ticklabels", []):
+                if "bbox_px" in label:
+                    label["bbox_px"] = adjust_bbox(label["bbox_px"])
+
+        # Adjust legend
+        if "legend" in ax_region:
+            legend = ax_region["legend"]
+            if "bbox_px" in legend:
+                legend["bbox_px"] = adjust_bbox(legend["bbox_px"])
+            for entry in legend.get("entries", []):
+                if "bbox_px" in entry:
+                    entry["bbox_px"] = adjust_bbox(entry["bbox_px"])
+
+    return result
+
+
+def _adjust_path_data_for_offset(
+    path_data: Dict[str, Any],
+    offset_left: float,
+    offset_upper: float,
+) -> Dict[str, Any]:
+    """Adjust path_data coordinates by subtracting offset.
+
+    Used when coordinates are already in PNG space (extracted at export DPI).
+
+    Parameters
+    ----------
+    path_data : dict
+        The path_data dict (already in PNG coords).
+    offset_left : float
+        Total offset from left edge to subtract.
+    offset_upper : float
+        Total offset from top edge to subtract.
+
+    Returns
+    -------
+    dict
+        path_data with adjusted coordinates.
+    """
+    import copy
+    result = copy.deepcopy(path_data)
+
+    # Adjust axes bbox_px
+    for ax in result.get("axes", []):
+        if "bbox_px" in ax:
+            bbox = ax["bbox_px"]
+            if isinstance(bbox, dict):
+                bbox["x0"] = bbox.get("x0", 0) - offset_left
+                bbox["y0"] = bbox.get("y0", 0) - offset_upper
+                if "x1" in bbox:
+                    bbox["x1"] = bbox["x1"] - offset_left
+                if "y1" in bbox:
+                    bbox["y1"] = bbox["y1"] - offset_upper
+
+    # Adjust artists
+    for artist in result.get("artists", []):
+        if "bbox_px" in artist and artist["bbox_px"]:
+            bbox = artist["bbox_px"]
+            if isinstance(bbox, dict):
+                bbox["x0"] = bbox.get("x0", 0) - offset_left
+                bbox["y0"] = bbox.get("y0", 0) - offset_upper
+                if "x1" in bbox:
+                    bbox["x1"] = bbox["x1"] - offset_left
+                if "y1" in bbox:
+                    bbox["y1"] = bbox["y1"] - offset_upper
+
+        # Adjust path_px points
+        if "path_px" in artist and artist["path_px"]:
+            artist["path_px"] = [
+                [pt[0] - offset_left, pt[1] - offset_upper]
+                for pt in artist["path_px"]
+                if len(pt) >= 2
+            ]
+
+    return result
+
+
+def _adjust_path_data_for_crop(
+    path_data: Dict[str, Any],
+    offset_left: float,
+    offset_upper: float,
+) -> Dict[str, Any]:
+    """Adjust path_data coordinates by subtracting crop offset.
+
+    Parameters
+    ----------
+    path_data : dict
+        The path_data dict from extract_path_data.
+    offset_left : float
+        Total offset from left edge.
+    offset_upper : float
+        Total offset from top edge.
+
+    Returns
+    -------
+    dict
+        path_data with adjusted coordinates.
+    """
+    import copy
+    result = copy.deepcopy(path_data)
+
+    # Adjust axes bbox_px
+    for ax in result.get("axes", []):
+        if "bbox_px" in ax:
+            bbox = ax["bbox_px"]
+            if isinstance(bbox, dict):
+                bbox["x0"] = bbox.get("x0", 0) - offset_left
+                bbox["y0"] = bbox.get("y0", 0) - offset_upper
+                # x1, y1 if present
+                if "x1" in bbox:
+                    bbox["x1"] = bbox["x1"] - offset_left
+                if "y1" in bbox:
+                    bbox["y1"] = bbox["y1"] - offset_upper
+
+    # Adjust artists
+    for artist in result.get("artists", []):
+        if "bbox_px" in artist and artist["bbox_px"]:
+            bbox = artist["bbox_px"]
+            if isinstance(bbox, dict):
+                bbox["x0"] = bbox.get("x0", 0) - offset_left
+                bbox["y0"] = bbox.get("y0", 0) - offset_upper
+                if "x1" in bbox:
+                    bbox["x1"] = bbox["x1"] - offset_left
+                if "y1" in bbox:
+                    bbox["y1"] = bbox["y1"] - offset_upper
+
+        # Adjust path_px points
+        if "path_px" in artist and artist["path_px"]:
+            artist["path_px"] = [
+                [pt[0] - offset_left, pt[1] - offset_upper]
+                for pt in artist["path_px"]
+                if len(pt) >= 2
+            ]
+
+    return result
+
+
+def _draw_bbox(ax, bbox: List, color: str, label: str, lw: float = 2) -> None:
+    """Draw a bounding box on an axes with label inside."""
+    import matplotlib.patches as patches
+
+    x0, y0, x1, y1 = bbox
+    width = x1 - x0
+    height = y1 - y0
+    rect = patches.Rectangle((x0, y0), width, height,
+                             linewidth=lw, edgecolor=color, facecolor='none')
+    ax.add_patch(rect)
+    # Place label at top-left corner inside the box with background
+    ax.text(x0 + 2, y0 + 2, label, fontsize=6, color="white", va='top', ha='left',
+           fontweight='bold', bbox=dict(boxstyle="round,pad=0.1", facecolor=color, alpha=0.8))
+
+
+def _format_json_summary(data: Dict, max_depth: int = 2, current_depth: int = 0) -> str:
+    """Format JSON data as summary text with limited depth."""
+    lines = []
+
+    def _format_value(key: str, value, depth: int, prefix: str = "") -> None:
+        indent = "  " * depth
+        if depth >= max_depth:
+            if isinstance(value, dict):
+                lines.append(f"{prefix}{indent}{key}: {{...}} ({len(value)} keys)")
+            elif isinstance(value, list):
+                lines.append(f"{prefix}{indent}{key}: [...] ({len(value)} items)")
+            else:
+                val_str = str(value)[:30]
+                if len(str(value)) > 30:
+                    val_str += "..."
+                lines.append(f"{prefix}{indent}{key}: {val_str}")
+        elif isinstance(value, dict):
+            lines.append(f"{prefix}{indent}{key}:")
+            for k, v in list(value.items())[:8]:  # Limit items
+                _format_value(k, v, depth + 1, prefix)
+            if len(value) > 8:
+                lines.append(f"{prefix}{indent}  ... ({len(value) - 8} more)")
+        elif isinstance(value, list):
+            if len(value) > 0 and isinstance(value[0], dict):
+                lines.append(f"{prefix}{indent}{key}: [{len(value)} items]")
+            else:
+                val_str = str(value)[:50]
+                if len(str(value)) > 50:
+                    val_str += "..."
+                lines.append(f"{prefix}{indent}{key}: {val_str}")
+        else:
+            val_str = str(value)[:40]
+            if len(str(value)) > 40:
+                val_str += "..."
+            lines.append(f"{prefix}{indent}{key}: {val_str}")
+
+    for key, value in data.items():
+        _format_value(key, value, current_depth)
+
+    return "\n".join(lines[:40])  # Limit total lines
+
+
+def load_layered_pltz_bundle(bundle_dir: Path) -> Dict[str, Any]:
+    """
+    Load layered .pltz bundle and return merged spec for editor.
+
+    Parameters
+    ----------
+    bundle_dir : Path
+        Path to .pltz.d bundle.
+
+    Returns
+    -------
+    dict
+        Merged bundle data compatible with editor.
+    """
+    bundle_dir = Path(bundle_dir)
+
+    result = {
+        "spec": None,
+        "style": None,
+        "geometry": None,
+        "merged": None,  # Combined for backward compatibility
+        "basename": "plot",
+    }
+
+    # Load spec.json
+    spec_path = bundle_dir / "spec.json"
+    if spec_path.exists():
+        with open(spec_path, "r") as f:
+            result["spec"] = json.load(f)
+            result["basename"] = result["spec"].get("plot_id", "plot")
+
+    # Load style.json
+    style_path = bundle_dir / "style.json"
+    if style_path.exists():
+        with open(style_path, "r") as f:
+            result["style"] = json.load(f)
+
+    # Load geometry from cache
+    geometry_path = bundle_dir / "cache" / "geometry_px.json"
+    if geometry_path.exists():
+        with open(geometry_path, "r") as f:
+            result["geometry"] = json.load(f)
+
+    # Create merged view for backward compatibility with editor
+    result["merged"] = merge_layered_bundle(
+        result["spec"], result["style"], result["geometry"]
+    )
+
+    return result
+
+
+def merge_layered_bundle(
+    spec: Optional[Dict],
+    style: Optional[Dict],
+    geometry: Optional[Dict],
+) -> Dict[str, Any]:
+    """
+    Merge spec/style/geometry into old-format compatible dict for editor.
+
+    This provides backward compatibility with editors expecting the old format.
+    """
+    if spec is None:
+        return {}
+
+    merged = {
+        "schema": {"name": "scitex.plt.plot", "version": "2.0.0"},
+        "backend": "mpl",
+    }
+
+    # Merge data section
+    if "data" in spec:
+        merged["data"] = {
+            "source": spec["data"].get("csv", "data.csv"),
+            "path": spec["data"].get("csv", "data.csv"),
+            "hash": spec["data"].get("hash"),
+        }
+
+    # Merge size from style
+    if style and "size" in style:
+        merged["size"] = {
+            "width_mm": style["size"].get("width_mm", 80),
+            "height_mm": style["size"].get("height_mm", 68),
+            "dpi": geometry.get("dpi", get_default_dpi()) if geometry else get_default_dpi(),
+        }
+
+    # Merge axes from spec + style + geometry
+    merged["axes"] = []
+    for ax_spec in spec.get("axes", []):
+        ax_merged = {
+            "id": ax_spec.get("id"),
+            "xlabel": ax_spec.get("labels", {}).get("xlabel"),
+            "ylabel": ax_spec.get("labels", {}).get("ylabel"),
+            "title": ax_spec.get("labels", {}).get("title"),
+            "xlim": ax_spec.get("limits", {}).get("x"),
+            "ylim": ax_spec.get("limits", {}).get("y"),
+            "bbox": ax_spec.get("bbox", {}),
+        }
+
+        # Add geometry bbox_px if available
+        if geometry:
+            for ax_geom in geometry.get("axes", []):
+                if ax_geom.get("id") == ax_spec.get("id"):
+                    ax_merged["bbox_px"] = ax_geom.get("bbox_px", {})
+                    break
+
+        merged["axes"].append(ax_merged)
+
+    # Merge traces with styles
+    merged["traces"] = []
+    # Build lookup for trace styles by trace_id
+    trace_style_map = {}
+    if style and "traces" in style:
+        for ts in style.get("traces", []):
+            if isinstance(ts, dict):
+                trace_style_map[ts.get("trace_id", "")] = ts
+
+    for trace in spec.get("traces", []):
+        trace_merged = dict(trace)
+        # Add style if available
+        trace_id = trace.get("id", "")
+        if trace_id in trace_style_map:
+            trace_merged.update(trace_style_map[trace_id])
+        merged["traces"].append(trace_merged)
+
+    # Merge theme from style
+    if style and "theme" in style:
+        merged["theme"] = style["theme"]
+
+    # Merge legend from style (for editor compatibility)
+    if style and "legend" in style:
+        legend_style = style["legend"]
+        merged["legend"] = {
+            "visible": legend_style.get("visible", True),
+            # Use "location" key but also provide "loc" for compatibility
+            "loc": legend_style.get("location", "best"),
+            "location": legend_style.get("location", "best"),
+            "frameon": legend_style.get("frameon", False),
+            "fontsize": legend_style.get("fontsize"),
+            "ncols": legend_style.get("ncols", 1),
+            "title": legend_style.get("title"),
+        }
+
+    # Merge hit_regions, selectable_regions, and figure_px from geometry
+    if geometry:
+        if "hit_regions" in geometry:
+            merged["hit_regions"] = geometry["hit_regions"]
+        if "selectable_regions" in geometry:
+            merged["selectable_regions"] = geometry["selectable_regions"]
+        if "figure_px" in geometry:
+            merged["figure_px"] = geometry["figure_px"]
+        if "artists" in geometry:
+            merged["artists"] = geometry["artists"]
+
+    return merged
+
+
+# EOF