multipers 2.2.3__cp310-cp310-win_amd64.whl → 2.3.1__cp310-cp310-win_amd64.whl

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  1. multipers/__init__.py +33 -31
  2. multipers/_signed_measure_meta.py +430 -430
  3. multipers/_slicer_meta.py +211 -212
  4. multipers/data/MOL2.py +458 -458
  5. multipers/data/UCR.py +18 -18
  6. multipers/data/graphs.py +466 -466
  7. multipers/data/immuno_regions.py +27 -27
  8. multipers/data/pytorch2simplextree.py +90 -90
  9. multipers/data/shape3d.py +101 -101
  10. multipers/data/synthetic.py +113 -111
  11. multipers/distances.py +198 -198
  12. multipers/filtration_conversions.pxd.tp +84 -84
  13. multipers/filtrations/__init__.py +18 -0
  14. multipers/{ml/convolutions.py → filtrations/density.py} +563 -520
  15. multipers/filtrations/filtrations.py +289 -0
  16. multipers/filtrations.pxd +224 -224
  17. multipers/function_rips.cp310-win_amd64.pyd +0 -0
  18. multipers/function_rips.pyx +105 -105
  19. multipers/grids.cp310-win_amd64.pyd +0 -0
  20. multipers/grids.pyx +350 -350
  21. multipers/gudhi/Persistence_slices_interface.h +132 -132
  22. multipers/gudhi/Simplex_tree_interface.h +239 -245
  23. multipers/gudhi/Simplex_tree_multi_interface.h +516 -561
  24. multipers/gudhi/cubical_to_boundary.h +59 -59
  25. multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -450
  26. multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -1070
  27. multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -579
  28. multipers/gudhi/gudhi/Debug_utils.h +45 -45
  29. multipers/gudhi/gudhi/Fields/Multi_field.h +484 -484
  30. multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -455
  31. multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -450
  32. multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -531
  33. multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -507
  34. multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -531
  35. multipers/gudhi/gudhi/Fields/Z2_field.h +355 -355
  36. multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -376
  37. multipers/gudhi/gudhi/Fields/Zp_field.h +420 -420
  38. multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -400
  39. multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -418
  40. multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -337
  41. multipers/gudhi/gudhi/Matrix.h +2107 -2107
  42. multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -1038
  43. multipers/gudhi/gudhi/Multi_persistence/Box.h +171 -171
  44. multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -282
  45. multipers/gudhi/gudhi/Off_reader.h +173 -173
  46. multipers/gudhi/gudhi/One_critical_filtration.h +1433 -1431
  47. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -769
  48. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -686
  49. multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -842
  50. multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -1350
  51. multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -1105
  52. multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -859
  53. multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -910
  54. multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -139
  55. multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -230
  56. multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -211
  57. multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -60
  58. multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -60
  59. multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -136
  60. multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -190
  61. multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -616
  62. multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -150
  63. multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -106
  64. multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -219
  65. multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -327
  66. multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -1140
  67. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -934
  68. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -934
  69. multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -980
  70. multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -1092
  71. multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -192
  72. multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -921
  73. multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -1093
  74. multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -1012
  75. multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -1244
  76. multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -186
  77. multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -164
  78. multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -156
  79. multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -376
  80. multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -540
  81. multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -118
  82. multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -173
  83. multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -128
  84. multipers/gudhi/gudhi/Persistent_cohomology.h +745 -745
  85. multipers/gudhi/gudhi/Points_off_io.h +171 -171
  86. multipers/gudhi/gudhi/Simple_object_pool.h +69 -69
  87. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -463
  88. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -83
  89. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -106
  90. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -277
  91. multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -62
  92. multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -27
  93. multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -62
  94. multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -157
  95. multipers/gudhi/gudhi/Simplex_tree.h +2794 -2794
  96. multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -163
  97. multipers/gudhi/gudhi/distance_functions.h +62 -62
  98. multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -104
  99. multipers/gudhi/gudhi/persistence_interval.h +253 -253
  100. multipers/gudhi/gudhi/persistence_matrix_options.h +170 -170
  101. multipers/gudhi/gudhi/reader_utils.h +367 -367
  102. multipers/gudhi/mma_interface_coh.h +256 -255
  103. multipers/gudhi/mma_interface_h0.h +223 -231
  104. multipers/gudhi/mma_interface_matrix.h +291 -282
  105. multipers/gudhi/naive_merge_tree.h +536 -575
  106. multipers/gudhi/scc_io.h +310 -289
  107. multipers/gudhi/truc.h +957 -888
  108. multipers/io.cp310-win_amd64.pyd +0 -0
  109. multipers/io.pyx +714 -711
  110. multipers/ml/accuracies.py +90 -90
  111. multipers/ml/invariants_with_persistable.py +79 -79
  112. multipers/ml/kernels.py +176 -176
  113. multipers/ml/mma.py +713 -714
  114. multipers/ml/one.py +472 -472
  115. multipers/ml/point_clouds.py +352 -346
  116. multipers/ml/signed_measures.py +1589 -1589
  117. multipers/ml/sliced_wasserstein.py +461 -461
  118. multipers/ml/tools.py +113 -113
  119. multipers/mma_structures.cp310-win_amd64.pyd +0 -0
  120. multipers/mma_structures.pxd +127 -127
  121. multipers/mma_structures.pyx +4 -8
  122. multipers/mma_structures.pyx.tp +1083 -1085
  123. multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -93
  124. multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -97
  125. multipers/multi_parameter_rank_invariant/function_rips.h +322 -322
  126. multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -769
  127. multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -148
  128. multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -369
  129. multipers/multiparameter_edge_collapse.py +41 -41
  130. multipers/multiparameter_module_approximation/approximation.h +2298 -2295
  131. multipers/multiparameter_module_approximation/combinatory.h +129 -129
  132. multipers/multiparameter_module_approximation/debug.h +107 -107
  133. multipers/multiparameter_module_approximation/format_python-cpp.h +286 -286
  134. multipers/multiparameter_module_approximation/heap_column.h +238 -238
  135. multipers/multiparameter_module_approximation/images.h +79 -79
  136. multipers/multiparameter_module_approximation/list_column.h +174 -174
  137. multipers/multiparameter_module_approximation/list_column_2.h +232 -232
  138. multipers/multiparameter_module_approximation/ru_matrix.h +347 -347
  139. multipers/multiparameter_module_approximation/set_column.h +135 -135
  140. multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -36
  141. multipers/multiparameter_module_approximation/unordered_set_column.h +166 -166
  142. multipers/multiparameter_module_approximation/utilities.h +403 -419
  143. multipers/multiparameter_module_approximation/vector_column.h +223 -223
  144. multipers/multiparameter_module_approximation/vector_matrix.h +331 -331
  145. multipers/multiparameter_module_approximation/vineyards.h +464 -464
  146. multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -649
  147. multipers/multiparameter_module_approximation.cp310-win_amd64.pyd +0 -0
  148. multipers/multiparameter_module_approximation.pyx +218 -217
  149. multipers/pickle.py +90 -53
  150. multipers/plots.py +342 -334
  151. multipers/point_measure.cp310-win_amd64.pyd +0 -0
  152. multipers/point_measure.pyx +322 -320
  153. multipers/simplex_tree_multi.cp310-win_amd64.pyd +0 -0
  154. multipers/simplex_tree_multi.pxd +133 -133
  155. multipers/simplex_tree_multi.pyx +115 -48
  156. multipers/simplex_tree_multi.pyx.tp +1947 -1935
  157. multipers/slicer.cp310-win_amd64.pyd +0 -0
  158. multipers/slicer.pxd +301 -120
  159. multipers/slicer.pxd.tp +218 -214
  160. multipers/slicer.pyx +1570 -507
  161. multipers/slicer.pyx.tp +931 -914
  162. multipers/tensor/tensor.h +672 -672
  163. multipers/tensor.pxd +13 -13
  164. multipers/test.pyx +44 -44
  165. multipers/tests/__init__.py +57 -57
  166. multipers/torch/diff_grids.py +217 -217
  167. multipers/torch/rips_density.py +310 -304
  168. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/LICENSE +21 -21
  169. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/METADATA +21 -11
  170. multipers-2.3.1.dist-info/RECORD +182 -0
  171. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/WHEEL +1 -1
  172. multipers/tests/test_diff_helper.py +0 -73
  173. multipers/tests/test_hilbert_function.py +0 -82
  174. multipers/tests/test_mma.py +0 -83
  175. multipers/tests/test_point_clouds.py +0 -49
  176. multipers/tests/test_python-cpp_conversion.py +0 -82
  177. multipers/tests/test_signed_betti.py +0 -181
  178. multipers/tests/test_signed_measure.py +0 -89
  179. multipers/tests/test_simplextreemulti.py +0 -221
  180. multipers/tests/test_slicer.py +0 -221
  181. multipers-2.2.3.dist-info/RECORD +0 -189
  182. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/top_level.txt +0 -0
@@ -1,253 +1,253 @@
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- /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
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- * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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- * Author(s): Hannah Schreiber
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- *
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- * Copyright (C) 2024 Inria
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- *
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- * Modification(s):
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- * - YYYY/MM Author: Description of the modification
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- */
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-
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- /**
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- * @file persistence_interval.h
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- * @author Hannah Schreiber
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- * @brief Contains @ref Gudhi::persistence_matrix::Persistence_interval class.
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- */
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-
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- #ifndef PM_INTERVAL_INCLUDED
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- #define PM_INTERVAL_INCLUDED
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-
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- #include <ostream> //std::ostream
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- #include <limits> //std::numeric_limits
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- #include <tuple>
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- #include <utility> //std::move
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-
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- namespace Gudhi {
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- namespace persistence_matrix {
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-
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- /**
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- * @class Persistence_interval persistence_interval.h gudhi/persistence_interval.h
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- * @ingroup persistence_matrix
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- *
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- * @brief Type for an interval in a persistent diagram or barcode. Stores the birth, death and dimension of the
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- * interval. It can be used as a tuple with `get`/`std::get` (birth, death and dimension in this order),
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- * `std::tuple_element` and `std::tuple_size`, as well as structured binding.
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- *
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- * @tparam Dimension Type of the dimension value.
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- * @tparam Event_value Type of the birth and death value.
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- */
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- template <typename Dimension, typename Event_value>
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- struct Persistence_interval {
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- /**
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- * @brief Stores the infinity value for birth and death events. Its value depends on the template parameter
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- * `Event_value`:
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- * - if `Event_value` has a native infinity value, it takes this value,
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- * - otherwise, if `Event_value` is a signed type, it takes value -1,
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- * - otherwise, if `Event_value` is a unsigned type, it takes the maximal possible value.
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- *
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- * Is also used as default value for birth and death attributes when not initialized.
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- */
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- static constexpr Event_value inf = std::numeric_limits<Event_value>::has_infinity
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- ? std::numeric_limits<Event_value>::infinity()
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- : static_cast<Event_value>(-1);
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-
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- /**
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- * @brief Constructor.
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- *
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- * @param birth Birth value of the cycle. Default value: @ref inf.
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- * @param death Death value of the cycle. Default value: @ref inf.
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- * @param dim Dimension of the cycle. Default value: -1.
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- */
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- Persistence_interval(Event_value birth = inf, Event_value death = inf, Dimension dim = -1)
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- : dim(dim), birth(birth), death(death) {}
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-
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- Dimension dim; /**< Dimension of the cycle.*/
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- Event_value birth; /**< Birth value of the cycle. */
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- Event_value death; /**< Death value of the cycle. */
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-
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- /**
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- * @brief operator<<
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- *
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- * @param stream outstream
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- * @param interval interval to stream
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- */
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- inline friend std::ostream& operator<<(std::ostream& stream, const Persistence_interval& interval) {
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- stream << "[" << interval.dim << "] ";
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- if constexpr (std::numeric_limits<Event_value>::has_infinity) {
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- stream << interval.birth << " - " << interval.death;
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- } else {
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- if (interval.birth == inf)
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- stream << "inf";
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- else
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- stream << interval.birth;
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- stream << " - ";
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- if (interval.death == inf)
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- stream << "inf";
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- else
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- stream << interval.death;
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- }
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- return stream;
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- }
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-
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- /**
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- * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
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- *
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- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
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- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
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- */
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- template <std::size_t I>
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- constexpr auto& get() & noexcept {
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- static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
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-
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- if constexpr (I == 0) return birth;
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- if constexpr (I == 1) return death;
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- if constexpr (I == 2) return dim;
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- }
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-
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- /**
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- * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
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- *
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- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
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- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
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- */
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- template <std::size_t I>
114
- constexpr const auto& get() const& noexcept {
115
- static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
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-
117
- if constexpr (I == 0) return birth;
118
- if constexpr (I == 1) return death;
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- if constexpr (I == 2) return dim;
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- }
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-
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- /**
123
- * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
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- *
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- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
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- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
127
- */
128
- template <std::size_t I>
129
- constexpr auto&& get() && noexcept {
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- static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
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-
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- if constexpr (I == 0) return std::move(birth);
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- if constexpr (I == 1) return std::move(death);
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- if constexpr (I == 2) return std::move(dim);
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- }
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-
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- /**
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- * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
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- *
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- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
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- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
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- */
143
- template <std::size_t I>
144
- constexpr const auto&& get() const&& noexcept {
145
- static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
146
-
147
- if constexpr (I == 0) return std::move(birth);
148
- if constexpr (I == 1) return std::move(death);
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- if constexpr (I == 2) return std::move(dim);
150
- }
151
- };
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-
153
- } // namespace persistence_matrix
154
- } // namespace Gudhi
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-
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- namespace std {
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-
158
- /**
159
- * @ingroup persistence_matrix
160
- *
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- * @brief Partial specialization of `std::tuple_size` for @ref Gudhi::persistence_matrix::Persistence_interval.
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- *
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- * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
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- * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
165
- */
166
- template <typename Dimension, typename Event_value>
167
- struct tuple_size<Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value> >
168
- : integral_constant<size_t, 3> {};
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-
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- /**
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- * @ingroup persistence_matrix
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- *
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- * @brief Partial specialization of `std::tuple_element` for @ref Gudhi::persistence_matrix::Persistence_interval.
174
- *
175
- * @tparam I Index of the type to store: 0 for the birth value type, 1 for the death value type and 2 for the
176
- * dimension value type.
177
- * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
178
- * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
179
- */
180
- template <size_t I, typename Dimension, typename Event_value>
181
- struct tuple_element<I, Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value> > {
182
- static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
183
-
184
- using type = typename conditional <I < 2, Event_value, Dimension>::type;
185
- };
186
-
187
- /**
188
- * @ingroup persistence_matrix
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- *
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- * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
191
- *
192
- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
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- * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
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- * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
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- * @param i Interval from which the value should be returned.
196
- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
197
- */
198
- template <size_t I, typename Dimension, typename Event_value>
199
- constexpr auto& get(Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>& i) noexcept {
200
- return i.template get<I>();
201
- }
202
-
203
- /**
204
- * @ingroup persistence_matrix
205
- *
206
- * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
207
- *
208
- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
209
- * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
210
- * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
211
- * @param i Interval from which the value should be returned.
212
- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
213
- */
214
- template <size_t I, typename Dimension, typename Event_value>
215
- constexpr const auto& get(const Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>& i) noexcept {
216
- return i.template get<I>();
217
- }
218
-
219
- /**
220
- * @ingroup persistence_matrix
221
- *
222
- * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
223
- *
224
- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
225
- * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
226
- * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
227
- * @param i Interval from which the value should be returned.
228
- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
229
- */
230
- template <size_t I, typename Dimension, typename Event_value>
231
- constexpr auto&& get(Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>&& i) noexcept {
232
- return std::move(i).template get<I>();
233
- }
234
-
235
- /**
236
- * @ingroup persistence_matrix
237
- *
238
- * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
239
- *
240
- * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
241
- * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
242
- * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
243
- * @param i Interval from which the value should be returned.
244
- * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
245
- */
246
- template <size_t I, typename Dimension, typename Event_value>
247
- constexpr const auto&& get(const Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>&& i) noexcept {
248
- return std::move(i).template get<I>();
249
- }
250
-
251
- } // namespace std
252
-
253
- #endif // PM_INTERVAL_INCLUDED
1
+ /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
2
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
3
+ * Author(s): Hannah Schreiber
4
+ *
5
+ * Copyright (C) 2024 Inria
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+ *
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+ * Modification(s):
8
+ * - YYYY/MM Author: Description of the modification
9
+ */
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+
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+ /**
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+ * @file persistence_interval.h
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+ * @author Hannah Schreiber
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+ * @brief Contains @ref Gudhi::persistence_matrix::Persistence_interval class.
15
+ */
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+
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+ #ifndef PM_INTERVAL_INCLUDED
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+ #define PM_INTERVAL_INCLUDED
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+
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+ #include <ostream> //std::ostream
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+ #include <limits> //std::numeric_limits
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+ #include <tuple>
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+ #include <utility> //std::move
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+
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+ namespace Gudhi {
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+ namespace persistence_matrix {
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+
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+ /**
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+ * @class Persistence_interval persistence_interval.h gudhi/persistence_interval.h
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+ * @ingroup persistence_matrix
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+ *
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+ * @brief Type for an interval in a persistent diagram or barcode. Stores the birth, death and dimension of the
33
+ * interval. It can be used as a tuple with `get`/`std::get` (birth, death and dimension in this order),
34
+ * `std::tuple_element` and `std::tuple_size`, as well as structured binding.
35
+ *
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+ * @tparam Dimension Type of the dimension value.
37
+ * @tparam Event_value Type of the birth and death value.
38
+ */
39
+ template <typename Dimension, typename Event_value>
40
+ struct Persistence_interval {
41
+ /**
42
+ * @brief Stores the infinity value for birth and death events. Its value depends on the template parameter
43
+ * `Event_value`:
44
+ * - if `Event_value` has a native infinity value, it takes this value,
45
+ * - otherwise, if `Event_value` is a signed type, it takes value -1,
46
+ * - otherwise, if `Event_value` is a unsigned type, it takes the maximal possible value.
47
+ *
48
+ * Is also used as default value for birth and death attributes when not initialized.
49
+ */
50
+ static constexpr Event_value inf = std::numeric_limits<Event_value>::has_infinity
51
+ ? std::numeric_limits<Event_value>::infinity()
52
+ : static_cast<Event_value>(-1);
53
+
54
+ /**
55
+ * @brief Constructor.
56
+ *
57
+ * @param birth Birth value of the cycle. Default value: @ref inf.
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+ * @param death Death value of the cycle. Default value: @ref inf.
59
+ * @param dim Dimension of the cycle. Default value: -1.
60
+ */
61
+ Persistence_interval(Event_value birth = inf, Event_value death = inf, Dimension dim = -1)
62
+ : dim(dim), birth(birth), death(death) {}
63
+
64
+ Dimension dim; /**< Dimension of the cycle.*/
65
+ Event_value birth; /**< Birth value of the cycle. */
66
+ Event_value death; /**< Death value of the cycle. */
67
+
68
+ /**
69
+ * @brief operator<<
70
+ *
71
+ * @param stream outstream
72
+ * @param interval interval to stream
73
+ */
74
+ inline friend std::ostream& operator<<(std::ostream& stream, const Persistence_interval& interval) {
75
+ stream << "[" << interval.dim << "] ";
76
+ if constexpr (std::numeric_limits<Event_value>::has_infinity) {
77
+ stream << interval.birth << " - " << interval.death;
78
+ } else {
79
+ if (interval.birth == inf)
80
+ stream << "inf";
81
+ else
82
+ stream << interval.birth;
83
+ stream << " - ";
84
+ if (interval.death == inf)
85
+ stream << "inf";
86
+ else
87
+ stream << interval.death;
88
+ }
89
+ return stream;
90
+ }
91
+
92
+ /**
93
+ * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
94
+ *
95
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
96
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
97
+ */
98
+ template <std::size_t I>
99
+ constexpr auto& get() & noexcept {
100
+ static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
101
+
102
+ if constexpr (I == 0) return birth;
103
+ if constexpr (I == 1) return death;
104
+ if constexpr (I == 2) return dim;
105
+ }
106
+
107
+ /**
108
+ * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
109
+ *
110
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
111
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
112
+ */
113
+ template <std::size_t I>
114
+ constexpr const auto& get() const& noexcept {
115
+ static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
116
+
117
+ if constexpr (I == 0) return birth;
118
+ if constexpr (I == 1) return death;
119
+ if constexpr (I == 2) return dim;
120
+ }
121
+
122
+ /**
123
+ * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
124
+ *
125
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
126
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
127
+ */
128
+ template <std::size_t I>
129
+ constexpr auto&& get() && noexcept {
130
+ static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
131
+
132
+ if constexpr (I == 0) return std::move(birth);
133
+ if constexpr (I == 1) return std::move(death);
134
+ if constexpr (I == 2) return std::move(dim);
135
+ }
136
+
137
+ /**
138
+ * @brief Specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
139
+ *
140
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
141
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
142
+ */
143
+ template <std::size_t I>
144
+ constexpr const auto&& get() const&& noexcept {
145
+ static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
146
+
147
+ if constexpr (I == 0) return std::move(birth);
148
+ if constexpr (I == 1) return std::move(death);
149
+ if constexpr (I == 2) return std::move(dim);
150
+ }
151
+ };
152
+
153
+ } // namespace persistence_matrix
154
+ } // namespace Gudhi
155
+
156
+ namespace std {
157
+
158
+ /**
159
+ * @ingroup persistence_matrix
160
+ *
161
+ * @brief Partial specialization of `std::tuple_size` for @ref Gudhi::persistence_matrix::Persistence_interval.
162
+ *
163
+ * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
164
+ * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
165
+ */
166
+ template <typename Dimension, typename Event_value>
167
+ struct tuple_size<Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value> >
168
+ : integral_constant<size_t, 3> {};
169
+
170
+ /**
171
+ * @ingroup persistence_matrix
172
+ *
173
+ * @brief Partial specialization of `std::tuple_element` for @ref Gudhi::persistence_matrix::Persistence_interval.
174
+ *
175
+ * @tparam I Index of the type to store: 0 for the birth value type, 1 for the death value type and 2 for the
176
+ * dimension value type.
177
+ * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
178
+ * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
179
+ */
180
+ template <size_t I, typename Dimension, typename Event_value>
181
+ struct tuple_element<I, Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value> > {
182
+ static_assert(I < 3, "Value mismatch at argument 1 in template parameter list. Maximal possible value is 2.");
183
+
184
+ using type = typename conditional <I < 2, Event_value, Dimension>::type;
185
+ };
186
+
187
+ /**
188
+ * @ingroup persistence_matrix
189
+ *
190
+ * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
191
+ *
192
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
193
+ * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
194
+ * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
195
+ * @param i Interval from which the value should be returned.
196
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
197
+ */
198
+ template <size_t I, typename Dimension, typename Event_value>
199
+ constexpr auto& get(Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>& i) noexcept {
200
+ return i.template get<I>();
201
+ }
202
+
203
+ /**
204
+ * @ingroup persistence_matrix
205
+ *
206
+ * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
207
+ *
208
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
209
+ * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
210
+ * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
211
+ * @param i Interval from which the value should be returned.
212
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
213
+ */
214
+ template <size_t I, typename Dimension, typename Event_value>
215
+ constexpr const auto& get(const Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>& i) noexcept {
216
+ return i.template get<I>();
217
+ }
218
+
219
+ /**
220
+ * @ingroup persistence_matrix
221
+ *
222
+ * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
223
+ *
224
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
225
+ * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
226
+ * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
227
+ * @param i Interval from which the value should be returned.
228
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
229
+ */
230
+ template <size_t I, typename Dimension, typename Event_value>
231
+ constexpr auto&& get(Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>&& i) noexcept {
232
+ return std::move(i).template get<I>();
233
+ }
234
+
235
+ /**
236
+ * @ingroup persistence_matrix
237
+ *
238
+ * @brief Partial specialization of `get` for @ref Gudhi::persistence_matrix::Persistence_interval.
239
+ *
240
+ * @tparam I Index of the value to return: 0 for the birth value, 1 for the death value and 2 for the dimension.
241
+ * @tparam Dimension First template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
242
+ * @tparam Event_value Second template parameter of @ref Gudhi::persistence_matrix::Persistence_interval.
243
+ * @param i Interval from which the value should be returned.
244
+ * @return Either the birth value if @p I == 0, the death value if @p I == 1 or the dimension if @p I == 2.
245
+ */
246
+ template <size_t I, typename Dimension, typename Event_value>
247
+ constexpr const auto&& get(const Gudhi::persistence_matrix::Persistence_interval<Dimension, Event_value>&& i) noexcept {
248
+ return std::move(i).template get<I>();
249
+ }
250
+
251
+ } // namespace std
252
+
253
+ #endif // PM_INTERVAL_INCLUDED