multipers 2.2.3__cp310-cp310-win_amd64.whl → 2.3.1__cp310-cp310-win_amd64.whl

multipers/tests/test_slicer.py

@@ -1,221 +0,0 @@
-import numpy as np
-import pytest
-from numpy import array
-
-import multipers as mp
-import multipers.slicer as mps
-from multipers.tests import assert_sm
-import pickle as pkl
-
-mpfree_flag = mp.io._check_available("mpfree")
-fd_flag = mp.io._check_available("function_delaunay")
-
-
-def test_1():
-    st = mp.SimplexTreeMulti(num_parameters=2)
-    st.insert([0], [0, 1])
-    st.insert([1], [1, 0])
-    st.insert([0, 1], [1, 1])
-    for S in mps.available_slicers:
-        if not S().is_vine or not S().col_type or S().is_kcritical:
-            continue
-        from multipers._slicer_meta import _blocks2boundary_dimension_grades
-
-        generator_maps, generator_dimensions, filtration_values = (
-            _blocks2boundary_dimension_grades(
-                st._to_scc(),
-                inplace=False,
-            )
-        )
-        it = S(
-            generator_maps, generator_dimensions, filtration_values
-        ).persistence_on_line([0, 0])
-        assert (
-            len(it) == 2
-        ), "There are simplices of dim 0 and 1, but no pers ? got {}".format(len(it))
-        assert len(it[1]) == 0, "Pers of dim 1 is not empty ? got {}".format(it[1])
-        for x in it[0]:
-            if np.any(np.asarray(x)):
-                continue
-            assert x[0] == 1 and x[1] > 45, "pers should be [1,inf], got {}".format(x)
-
-
-def test_2():
-    st = mp.SimplexTreeMulti(num_parameters=2)
-    st.insert([0], [0, 1])
-    st.insert([1], [1, 0])
-    st.insert([0, 1], [1, 1])
-    st.insert([0, 1, 2], [2, 2])
-    assert mp.slicer.to_simplextree(mp.Slicer(st, dtype=st.dtype)) == st
-
-
-def test_3():
-    st = mp.SimplexTreeMulti(num_parameters=2)
-    st.insert([0], [0, 1])
-    st.insert([1], [1, 0])
-    st.insert([0, 1], [1, 1])
-    sm = mp.signed_measure(st, invariant="rank", degree=0)
-    sm2 = mp.signed_measure(mp.Slicer(st, dtype=np.int32), invariant="rank", degree=0)
-    sm3 = mp.signed_measure(mp.Slicer(st, dtype=np.float64), invariant="rank", degree=0)
-    it = [
-        (
-            array([[0.0, 1.0, 1.0, 1.0], [1.0, 0.0, 1.0, 1.0], [1.0, 1.0, 1.0, 1.0]]),
-            array([1, 1, -1]),
-        )
-    ]
-    assert_sm(sm, it)
-    assert_sm(sm2, it)
-    assert_sm(sm3, it)
-
-
-def test_representative_cycles():
-    truc = [
-        {},
-        {},
-        {},
-        {},
-        {},
-        {},
-        {},
-        {2, 3},
-        {4, 5},
-        {0, 2},
-        {0, 1},
-        {1, 3},
-        {1, 2},
-        {7, 11, 12},
-        {9, 10, 12},
-        {5, 6},
-        {2, 4},
-        {4, 6},
-        {8, 15, 17},
-        {3, 6},
-    ]
-    truc = [list(machin) for machin in truc]
-    slicer = mp.slicer._Slicer_Matrix0_vine_f64(
-        truc,
-        np.array([max(len(x) - 1, 0) for x in truc]),
-        np.array([list(range(len(truc))), list(range(len(truc)))]).T,
-    )
-    slicer.compute_persistence(one_filtration=list(range(len(truc))))
-    cycles = slicer.get_representative_cycles()
-    assert len(cycles) == 3, f"There should be 3 dimensions here, found {len(cycles)}"
-    assert (
-        np.asarray(cycles[0]).shape[0] == 7
-    ), f"Invalid number of 0-cycles, got {np.asarray(cycles[0]).size}"
-    for c in cycles[1]:
-        assert (
-            np.unique(cycles[1][0], return_counts=True)[1] == 2
-        ).all(), f"Found a non-cycle, {cycles[1][0]}"
-    assert len(cycles[2]) == 0, "Found a 2-cycle, which should not exist"
-
-
-def test_pruning():
-    from multipers.tests import random_st
-
-    st = random_st(num_parameters=3, max_dim=4)
-    s = mp.Slicer(st)
-    s.prune_above_dimension(2)
-    s2 = mp.Slicer(s, max_dim=2)
-    assert s.get_dimensions()[-1] == 2, "Failed to prune dimension"
-    st.prune_above_dimension(2)
-    assert (
-        s.get_dimensions() == s2.get_dimensions()
-    ).all(), "pruned dimensions do not coincide"
-    assert s.get_boundaries() == s2.get_boundaries(), "Boundaries changed"
-    assert (
-        s.get_filtrations_values() == s2.get_filtrations_values()
-    ).all(), "Filtrations have changed"
-
-
-def test_scc():
-    import numpy as np
-
-    import multipers as mp
-    from multipers.distances import sm_distance
-    from multipers.io import _check_available
-    from multipers.tests import random_st
-
-    st = random_st(npts=500, num_parameters=2)
-    s = mp.Slicer(st, dtype=np.float64)
-    s.to_scc("truc.scc", degree=1)
-    s2 = mp.Slicer("truc.scc")
-    (a,) = mp.signed_measure(s)
-    (b,) = mp.signed_measure(s2)
-    assert sm_distance(a, b) < np.finfo(np.float64).resolution * s.num_generators
-
-    st = random_st(npts=500)
-    s = mp.Slicer(st).grid_squeeze(inplace=True)
-    s.filtration_grid = []
-    s.to_scc("truc.scc", degree=1)
-    s2 = mp.Slicer("truc.scc", dtype=np.float64)
-    (a,) = mp.signed_measure(s)
-    (b,) = mp.signed_measure(s2)
-    assert sm_distance(a, b) == 0
-
-    st = random_st(npts=200)
-    s = mp.Slicer(st).grid_squeeze(inplace=True)
-    s.filtration_grid = []
-    s.to_scc(
-        "truc.scc",
-    )
-    if _check_available("mpfree"):
-        s2 = mp.Slicer("truc.scc", dtype=np.float64).minpres(1)
-        (a,) = mp.signed_measure(s, degree=1)
-        (b,) = mp.signed_measure(s2, degree=1)
-        assert sm_distance(a, b) == 0
-    else:
-        pytest.skip("Skipped a test bc `mpfree` was not found.")
-
-
-def test_bitmap():
-    img = np.random.uniform(size=(12, 10, 11, 2))
-    num_parameters = img.shape[-1]
-    s = mp.slicer.from_bitmap(img)
-    num_vertices = np.searchsorted(s.get_dimensions(), 1)
-    assert num_vertices == np.prod(img.shape[:-1])
-    assert s.num_parameters == num_parameters
-    assert s.dimension == img.ndim - 1
-    assert np.all(
-        np.asarray(s.get_filtrations()[:num_vertices])
-        == img.reshape(-1, num_parameters)
-    )
-
-
-@pytest.mark.skipif(
-    not fd_flag or not mpfree_flag,
-    reason="Skipped external test as `function_delaunay`, `mpfree` were not found.",
-)
-@pytest.mark.parametrize("dim", [1, 2, 3, 4])
-@pytest.mark.parametrize("degree", [1, 2, 3])
-def test_external(dim, degree):
-    if degree >= dim:
-        return
-    X = np.random.uniform(size=(100, dim))
-    f = np.random.uniform(size=(X.shape[0]))
-    fd = mps.from_function_delaunay(X, f)
-    assert np.array_equal(np.unique(fd.get_dimensions()), np.arange(dim + 2))
-    fd_ = mps.from_function_delaunay(X, f, degree=degree)
-    assert np.array_equal(
-        np.unique(fd_.get_dimensions()), [degree, degree + 1]
-    )  ## only does presentations
-    fd_ = fd.minpres(degree=degree)
-    assert np.array_equal(
-        np.unique(fd_.get_dimensions()), [degree, degree + 1, degree + 2]
-    )  ## resolution by default
-
-def test_pkl():
-    for num_params in range(1,4):
-        img = np.random.uniform(size=(20,20,num_params))
-        img2 = np.array(img)
-        img2[0,0,0]+=1
-        s = mp.slicer.from_bitmap(img)
-        s2 = mp.slicer.from_bitmap(img2)
-        s3 = type(s)(s.get_boundaries()[:-1], s.get_dimensions()[:-1], s.get_filtrations()[:-1])
-        s4 = type(s)(s.get_boundaries(), s.get_dimensions()+1, s.get_filtrations())
-        assert len(s)> np.prod(img.shape[:-1])+1
-        assert s == s.copy()
-        assert s != s2
-        assert s != s3
-        assert s != s4
-        assert s == pkl.loads(pkl.dumps(s))

multipers-2.2.3.dist-info/RECORD

@@ -1,189 +0,0 @@
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