multipers 2.2.3__cp310-cp310-win_amd64.whl → 2.3.1__cp310-cp310-win_amd64.whl
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- multipers/__init__.py +33 -31
- multipers/_signed_measure_meta.py +430 -430
- multipers/_slicer_meta.py +211 -212
- multipers/data/MOL2.py +458 -458
- multipers/data/UCR.py +18 -18
- multipers/data/graphs.py +466 -466
- multipers/data/immuno_regions.py +27 -27
- multipers/data/pytorch2simplextree.py +90 -90
- multipers/data/shape3d.py +101 -101
- multipers/data/synthetic.py +113 -111
- multipers/distances.py +198 -198
- multipers/filtration_conversions.pxd.tp +84 -84
- multipers/filtrations/__init__.py +18 -0
- multipers/{ml/convolutions.py → filtrations/density.py} +563 -520
- multipers/filtrations/filtrations.py +289 -0
- multipers/filtrations.pxd +224 -224
- multipers/function_rips.cp310-win_amd64.pyd +0 -0
- multipers/function_rips.pyx +105 -105
- multipers/grids.cp310-win_amd64.pyd +0 -0
- multipers/grids.pyx +350 -350
- multipers/gudhi/Persistence_slices_interface.h +132 -132
- multipers/gudhi/Simplex_tree_interface.h +239 -245
- multipers/gudhi/Simplex_tree_multi_interface.h +516 -561
- multipers/gudhi/cubical_to_boundary.h +59 -59
- multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -450
- multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -1070
- multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -579
- multipers/gudhi/gudhi/Debug_utils.h +45 -45
- multipers/gudhi/gudhi/Fields/Multi_field.h +484 -484
- multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -455
- multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -450
- multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -531
- multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -507
- multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -531
- multipers/gudhi/gudhi/Fields/Z2_field.h +355 -355
- multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -376
- multipers/gudhi/gudhi/Fields/Zp_field.h +420 -420
- multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -400
- multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -418
- multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -337
- multipers/gudhi/gudhi/Matrix.h +2107 -2107
- multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -1038
- multipers/gudhi/gudhi/Multi_persistence/Box.h +171 -171
- multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -282
- multipers/gudhi/gudhi/Off_reader.h +173 -173
- multipers/gudhi/gudhi/One_critical_filtration.h +1433 -1431
- multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -769
- multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -686
- multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -842
- multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -1350
- multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -1105
- multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -859
- multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -910
- multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -139
- multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -230
- multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -211
- multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -60
- multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -60
- multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -136
- multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -190
- multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -616
- multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -150
- multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -106
- multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -219
- multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -327
- multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -1140
- multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -934
- multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -934
- multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -980
- multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -1092
- multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -192
- multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -921
- multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -1093
- multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -1012
- multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -1244
- multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -186
- multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -164
- multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -156
- multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -376
- multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -540
- multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -118
- multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -173
- multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -128
- multipers/gudhi/gudhi/Persistent_cohomology.h +745 -745
- multipers/gudhi/gudhi/Points_off_io.h +171 -171
- multipers/gudhi/gudhi/Simple_object_pool.h +69 -69
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -463
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -83
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -106
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -277
- multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -62
- multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -27
- multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -62
- multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -157
- multipers/gudhi/gudhi/Simplex_tree.h +2794 -2794
- multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -163
- multipers/gudhi/gudhi/distance_functions.h +62 -62
- multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -104
- multipers/gudhi/gudhi/persistence_interval.h +253 -253
- multipers/gudhi/gudhi/persistence_matrix_options.h +170 -170
- multipers/gudhi/gudhi/reader_utils.h +367 -367
- multipers/gudhi/mma_interface_coh.h +256 -255
- multipers/gudhi/mma_interface_h0.h +223 -231
- multipers/gudhi/mma_interface_matrix.h +291 -282
- multipers/gudhi/naive_merge_tree.h +536 -575
- multipers/gudhi/scc_io.h +310 -289
- multipers/gudhi/truc.h +957 -888
- multipers/io.cp310-win_amd64.pyd +0 -0
- multipers/io.pyx +714 -711
- multipers/ml/accuracies.py +90 -90
- multipers/ml/invariants_with_persistable.py +79 -79
- multipers/ml/kernels.py +176 -176
- multipers/ml/mma.py +713 -714
- multipers/ml/one.py +472 -472
- multipers/ml/point_clouds.py +352 -346
- multipers/ml/signed_measures.py +1589 -1589
- multipers/ml/sliced_wasserstein.py +461 -461
- multipers/ml/tools.py +113 -113
- multipers/mma_structures.cp310-win_amd64.pyd +0 -0
- multipers/mma_structures.pxd +127 -127
- multipers/mma_structures.pyx +4 -8
- multipers/mma_structures.pyx.tp +1083 -1085
- multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -93
- multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -97
- multipers/multi_parameter_rank_invariant/function_rips.h +322 -322
- multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -769
- multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -148
- multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -369
- multipers/multiparameter_edge_collapse.py +41 -41
- multipers/multiparameter_module_approximation/approximation.h +2298 -2295
- multipers/multiparameter_module_approximation/combinatory.h +129 -129
- multipers/multiparameter_module_approximation/debug.h +107 -107
- multipers/multiparameter_module_approximation/format_python-cpp.h +286 -286
- multipers/multiparameter_module_approximation/heap_column.h +238 -238
- multipers/multiparameter_module_approximation/images.h +79 -79
- multipers/multiparameter_module_approximation/list_column.h +174 -174
- multipers/multiparameter_module_approximation/list_column_2.h +232 -232
- multipers/multiparameter_module_approximation/ru_matrix.h +347 -347
- multipers/multiparameter_module_approximation/set_column.h +135 -135
- multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -36
- multipers/multiparameter_module_approximation/unordered_set_column.h +166 -166
- multipers/multiparameter_module_approximation/utilities.h +403 -419
- multipers/multiparameter_module_approximation/vector_column.h +223 -223
- multipers/multiparameter_module_approximation/vector_matrix.h +331 -331
- multipers/multiparameter_module_approximation/vineyards.h +464 -464
- multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -649
- multipers/multiparameter_module_approximation.cp310-win_amd64.pyd +0 -0
- multipers/multiparameter_module_approximation.pyx +218 -217
- multipers/pickle.py +90 -53
- multipers/plots.py +342 -334
- multipers/point_measure.cp310-win_amd64.pyd +0 -0
- multipers/point_measure.pyx +322 -320
- multipers/simplex_tree_multi.cp310-win_amd64.pyd +0 -0
- multipers/simplex_tree_multi.pxd +133 -133
- multipers/simplex_tree_multi.pyx +115 -48
- multipers/simplex_tree_multi.pyx.tp +1947 -1935
- multipers/slicer.cp310-win_amd64.pyd +0 -0
- multipers/slicer.pxd +301 -120
- multipers/slicer.pxd.tp +218 -214
- multipers/slicer.pyx +1570 -507
- multipers/slicer.pyx.tp +931 -914
- multipers/tensor/tensor.h +672 -672
- multipers/tensor.pxd +13 -13
- multipers/test.pyx +44 -44
- multipers/tests/__init__.py +57 -57
- multipers/torch/diff_grids.py +217 -217
- multipers/torch/rips_density.py +310 -304
- {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/LICENSE +21 -21
- {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/METADATA +21 -11
- multipers-2.3.1.dist-info/RECORD +182 -0
- {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/WHEEL +1 -1
- multipers/tests/test_diff_helper.py +0 -73
- multipers/tests/test_hilbert_function.py +0 -82
- multipers/tests/test_mma.py +0 -83
- multipers/tests/test_point_clouds.py +0 -49
- multipers/tests/test_python-cpp_conversion.py +0 -82
- multipers/tests/test_signed_betti.py +0 -181
- multipers/tests/test_signed_measure.py +0 -89
- multipers/tests/test_simplextreemulti.py +0 -221
- multipers/tests/test_slicer.py +0 -221
- multipers-2.2.3.dist-info/RECORD +0 -189
- {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/top_level.txt +0 -0
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/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
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* See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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* Author(s): Clément Maria
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*
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* Copyright (C) 2014 Inria
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*
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* Modification(s):
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* - 2022/04 Vincent Rouvreau: Add Simplex_tree_boundary_opposite_vertex_simplex_iterator for alpha and cech purpose
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* - YYYY/MM Author: Description of the modification
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*/
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#ifndef SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
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#define SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
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#include <gudhi/Debug_utils.h>
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#include <boost/iterator/iterator_facade.hpp>
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#include <vector>
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#include <utility> // for std::pair
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namespace Gudhi {
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/** \addtogroup simplex_tree
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* Iterators and range types for the Simplex_tree.
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* @{
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*/
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/** \brief Iterator over the vertices of a simplex
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* in a SimplexTree.
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*
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* Forward iterator, 'value_type' is SimplexTree::Vertex_handle.*/
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template<class SimplexTree>
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class Simplex_tree_simplex_vertex_iterator : public boost::iterator_facade<
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Simplex_tree_simplex_vertex_iterator<SimplexTree>,
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typename SimplexTree::Vertex_handle const, boost::forward_traversal_tag,
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typename SimplexTree::Vertex_handle const> {
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public:
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typedef typename SimplexTree::Simplex_handle Simplex_handle;
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typedef typename SimplexTree::Siblings Siblings;
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typedef typename SimplexTree::Vertex_handle Vertex_handle;
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explicit Simplex_tree_simplex_vertex_iterator(SimplexTree const* st)
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: // any end() iterator
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sib_(nullptr),
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v_(st->null_vertex()) {
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}
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Simplex_tree_simplex_vertex_iterator(SimplexTree const* st, Simplex_handle sh)
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: sib_(st->self_siblings(sh)),
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v_(sh->first) {
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}
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private:
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friend class boost::iterator_core_access;
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bool equal(Simplex_tree_simplex_vertex_iterator const &other) const {
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return sib_ == other.sib_ && v_ == other.v_;
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}
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Vertex_handle const& dereference() const {
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return v_;
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}
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void increment() {
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v_ = sib_->parent();
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sib_ = sib_->oncles();
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}
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};
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/*---------------------------------------------------------------------------*/
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/** \brief Iterator over the simplices of the boundary of a
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* simplex.
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*
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class Simplex_tree_boundary_simplex_iterator : public boost::iterator_facade<
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typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
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public:
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using Simplex_handle = typename SimplexTree::Simplex_handle;
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using Vertex_handle = typename SimplexTree::Vertex_handle;
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using Siblings = typename SimplexTree::Siblings;
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using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
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// For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is overwritten.
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st_(nullptr) {
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// any end() iterator
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explicit Simplex_tree_boundary_simplex_iterator(SimplexTree * st)
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next_(st->null_vertex()),
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Simplex_tree_boundary_simplex_iterator(SimplexTree * st, SimplexHandle sh)
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st_(st) {
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if constexpr (SimplexTree::Options::contiguous_vertices)
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GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
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Siblings * sib = st->self_siblings(sh);
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next_ = sib->parent();
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sib_ = sib->oncles();
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if constexpr (SimplexTree::Options::contiguous_vertices &&
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!SimplexTree::Options::stable_simplex_handles)
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{
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if (sib_->oncles() == nullptr) // Only relevant for edges
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}
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}
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private:
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friend class boost::iterator_core_access;
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// valid when iterating along the SAME boundary.
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bool equal(Simplex_tree_boundary_simplex_iterator const& other) const {
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return sh_ == other.sh_;
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}
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Simplex_handle const& dereference() const {
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assert(sh_ != st_->null_simplex());
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return sh_;
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}
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void increment() {
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if (sib_ == nullptr) {
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sh_ = st_->null_simplex();
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return;
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}
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Siblings * for_sib = sib_;
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Siblings * new_sib = sib_->oncles();
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auto rit = suffix_.rbegin();
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if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
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if (new_sib == nullptr) {
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// We reached the root, use a short-cut to find a vertex.
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if (rit == suffix_.rend()) {
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// Segment, this vertex is the last boundary simplex
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sh_ = for_sib->members_.begin() + last_;
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sib_ = nullptr;
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return;
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} else {
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// Dim >= 2, initial step of the descent
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sh_ = for_sib->members_.begin() + *rit;
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for_sib = sh_->second.children();
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++rit;
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}
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}
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}
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for (; rit != suffix_.rend(); ++rit) {
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sh_ = for_sib->find(*rit);
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for_sib = sh_->second.children();
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}
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sh_ = for_sib->find(last_); // sh_ points to the right simplex now
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suffix_.push_back(next_);
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next_ = sib_->parent();
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sib_ = new_sib;
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}
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// Most of the storage should be moved to the range, iterators should be light.
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Vertex_handle last_; // last vertex of the simplex
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Vertex_handle next_; // next vertex to push in suffix_
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Static_vertex_vector suffix_;
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Siblings * sib_; // where the next search will start from
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Simplex_handle sh_; // current Simplex_handle in the boundary
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SimplexTree * st_; // simplex containing the simplicial complex
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};
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/** \brief Iterator over the simplices of the boundary of a simplex and their opposite vertices.
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*
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* Forward iterator, value_type is std::pair<SimplexTree::Simplex_handle, SimplexTree::Vertex_handle>.*/
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template<class SimplexTree>
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class Simplex_tree_boundary_opposite_vertex_simplex_iterator : public boost::iterator_facade<
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Simplex_tree_boundary_opposite_vertex_simplex_iterator<SimplexTree>,
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std::pair<typename SimplexTree::Simplex_handle, typename SimplexTree::Vertex_handle> const, boost::forward_traversal_tag> {
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public:
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using Simplex_handle = typename SimplexTree::Simplex_handle;
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using Vertex_handle = typename SimplexTree::Vertex_handle;
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using Siblings = typename SimplexTree::Siblings;
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using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
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// For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is
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// overwritten.
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Simplex_tree_boundary_opposite_vertex_simplex_iterator()
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: sib_(nullptr),
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st_(nullptr) {
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}
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// any end() iterator
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explicit Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st)
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: last_(st->null_vertex()),
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next_(st->null_vertex()),
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sib_(nullptr),
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213
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baov_(st->null_simplex(), st->null_vertex()),
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st_(st) {
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}
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template<class SimplexHandle>
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218
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Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st, SimplexHandle sh)
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: last_(sh->first),
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220
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next_(st->null_vertex()),
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221
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sib_(nullptr),
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222
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baov_(st->null_simplex(), sh->first),
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st_(st) {
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224
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// Only check once at the beginning instead of for every increment, as this is expensive.
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225
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if constexpr (SimplexTree::Options::contiguous_vertices)
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226
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GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
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Siblings * sib = st->self_siblings(sh);
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next_ = sib->parent();
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229
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sib_ = sib->oncles();
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230
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if (sib_ != nullptr) {
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231
|
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if constexpr (SimplexTree::Options::contiguous_vertices &&
|
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232
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!SimplexTree::Options::stable_simplex_handles) {
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233
|
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if (sib_->oncles() == nullptr)
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234
|
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// Only relevant for edges
|
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235
|
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baov_.first = sib_->members_.begin() + next_;
|
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|
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else
|
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237
|
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baov_.first = sib_->find(next_);
|
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238
|
-
} else {
|
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239
|
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baov_.first = sib_->find(next_);
|
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240
|
-
}
|
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241
|
-
}
|
|
242
|
-
}
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243
|
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|
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244
|
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private:
|
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245
|
-
friend class boost::iterator_core_access;
|
|
246
|
-
|
|
247
|
-
// valid when iterating along the SAME boundary.
|
|
248
|
-
bool equal(Simplex_tree_boundary_opposite_vertex_simplex_iterator const& other) const {
|
|
249
|
-
return (baov_.first == other.baov_.first);
|
|
250
|
-
}
|
|
251
|
-
|
|
252
|
-
std::pair<Simplex_handle, Vertex_handle> const& dereference() const {
|
|
253
|
-
return baov_;
|
|
254
|
-
}
|
|
255
|
-
|
|
256
|
-
void increment() {
|
|
257
|
-
if (sib_ == nullptr) {
|
|
258
|
-
baov_.first = st_->null_simplex();
|
|
259
|
-
return; // ------>>
|
|
260
|
-
}
|
|
261
|
-
Siblings * for_sib = sib_;
|
|
262
|
-
Siblings * new_sib = sib_->oncles();
|
|
263
|
-
auto rit = suffix_.rbegin();
|
|
264
|
-
if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
|
|
265
|
-
if (new_sib == nullptr) {
|
|
266
|
-
// We reached the root, use a short-cut to find a vertex.
|
|
267
|
-
if (rit == suffix_.rend()) {
|
|
268
|
-
baov_.second = baov_.first->first;
|
|
269
|
-
// Segment, this vertex is the last boundary simplex
|
|
270
|
-
baov_.first = for_sib->members_.begin() + last_;
|
|
271
|
-
sib_ = nullptr;
|
|
272
|
-
return;
|
|
273
|
-
} else {
|
|
274
|
-
// Dim >= 2, initial step of the descent
|
|
275
|
-
baov_.first = for_sib->members_.begin() + *rit;
|
|
276
|
-
for_sib = baov_.first->second.children();
|
|
277
|
-
++rit;
|
|
278
|
-
}
|
|
279
|
-
}
|
|
280
|
-
}
|
|
281
|
-
|
|
282
|
-
for (; rit != suffix_.rend(); ++rit) {
|
|
283
|
-
baov_.first = for_sib->find(*rit);
|
|
284
|
-
for_sib = baov_.first->second.children();
|
|
285
|
-
}
|
|
286
|
-
baov_.first = for_sib->find(last_); // baov_.first points to the right simplex now
|
|
287
|
-
suffix_.push_back(next_);
|
|
288
|
-
next_ = sib_->parent();
|
|
289
|
-
sib_ = new_sib;
|
|
290
|
-
baov_.second = suffix_.back();
|
|
291
|
-
}
|
|
292
|
-
|
|
293
|
-
// Most of the storage should be moved to the range, iterators should be light.
|
|
294
|
-
Vertex_handle last_; // last vertex of the simplex
|
|
295
|
-
Vertex_handle next_; // next vertex to push in suffix_
|
|
296
|
-
Static_vertex_vector suffix_;
|
|
297
|
-
Siblings * sib_; // where the next search will start from
|
|
298
|
-
std::pair<Simplex_handle, Vertex_handle> baov_; // a pair containing the current Simplex_handle in the boundary and its opposite vertex
|
|
299
|
-
SimplexTree * st_; // simplex containing the simplicial complex
|
|
300
|
-
};
|
|
301
|
-
|
|
302
|
-
/*---------------------------------------------------------------------------*/
|
|
303
|
-
/** \brief Iterator over the simplices of a simplicial complex.
|
|
304
|
-
*
|
|
305
|
-
* Forward iterator, value_type is SimplexTree::Simplex_handle.*/
|
|
306
|
-
template<class SimplexTree>
|
|
307
|
-
class Simplex_tree_complex_simplex_iterator : public boost::iterator_facade<
|
|
308
|
-
Simplex_tree_complex_simplex_iterator<SimplexTree>,
|
|
309
|
-
typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
|
|
310
|
-
public:
|
|
311
|
-
typedef typename SimplexTree::Simplex_handle Simplex_handle;
|
|
312
|
-
typedef typename SimplexTree::Siblings Siblings;
|
|
313
|
-
typedef typename SimplexTree::Vertex_handle Vertex_handle;
|
|
314
|
-
|
|
315
|
-
// any end() iterator
|
|
316
|
-
Simplex_tree_complex_simplex_iterator()
|
|
317
|
-
: sib_(nullptr),
|
|
318
|
-
st_(nullptr) {
|
|
319
|
-
}
|
|
320
|
-
|
|
321
|
-
explicit Simplex_tree_complex_simplex_iterator(SimplexTree * st)
|
|
322
|
-
: sib_(nullptr),
|
|
323
|
-
st_(st) {
|
|
324
|
-
if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
|
|
325
|
-
st_ = nullptr;
|
|
326
|
-
} else {
|
|
327
|
-
sh_ = st->root()->members().begin();
|
|
328
|
-
sib_ = st->root();
|
|
329
|
-
while (st->has_children(sh_)) {
|
|
330
|
-
sib_ = sh_->second.children();
|
|
331
|
-
sh_ = sib_->members().begin();
|
|
332
|
-
}
|
|
333
|
-
}
|
|
334
|
-
}
|
|
335
|
-
private:
|
|
336
|
-
friend class boost::iterator_core_access;
|
|
337
|
-
|
|
338
|
-
// valid when iterating along the SAME boundary.
|
|
339
|
-
bool equal(Simplex_tree_complex_simplex_iterator const& other) const {
|
|
340
|
-
if (other.st_ == nullptr) {
|
|
341
|
-
return (st_ == nullptr);
|
|
342
|
-
}
|
|
343
|
-
if (st_ == nullptr) {
|
|
344
|
-
return false;
|
|
345
|
-
}
|
|
346
|
-
return (&(sh_->second) == &(other.sh_->second));
|
|
347
|
-
}
|
|
348
|
-
|
|
349
|
-
Simplex_handle const& dereference() const {
|
|
350
|
-
return sh_;
|
|
351
|
-
}
|
|
352
|
-
|
|
353
|
-
// Depth first traversal.
|
|
354
|
-
void increment() {
|
|
355
|
-
++sh_;
|
|
356
|
-
if (sh_ == sib_->members().end()) {
|
|
357
|
-
if (sib_->oncles() == nullptr) {
|
|
358
|
-
st_ = nullptr;
|
|
359
|
-
return;
|
|
360
|
-
} // reach the end
|
|
361
|
-
sh_ = sib_->oncles()->members().find(sib_->parent());
|
|
362
|
-
sib_ = sib_->oncles();
|
|
363
|
-
return;
|
|
364
|
-
}
|
|
365
|
-
while (st_->has_children(sh_)) {
|
|
366
|
-
sib_ = sh_->second.children();
|
|
367
|
-
sh_ = sib_->members().begin();
|
|
368
|
-
}
|
|
369
|
-
}
|
|
370
|
-
|
|
371
|
-
Simplex_handle sh_;
|
|
372
|
-
Siblings * sib_;
|
|
373
|
-
SimplexTree * st_;
|
|
374
|
-
};
|
|
375
|
-
|
|
376
|
-
/** \brief Iterator over the simplices of the skeleton of a given
|
|
377
|
-
* dimension of the simplicial complex.
|
|
378
|
-
*
|
|
379
|
-
* Forward iterator, value_type is SimplexTree::Simplex_handle.*/
|
|
380
|
-
template<class SimplexTree>
|
|
381
|
-
class Simplex_tree_skeleton_simplex_iterator : public boost::iterator_facade<
|
|
382
|
-
Simplex_tree_skeleton_simplex_iterator<SimplexTree>,
|
|
383
|
-
typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
|
|
384
|
-
public:
|
|
385
|
-
typedef typename SimplexTree::Simplex_handle Simplex_handle;
|
|
386
|
-
typedef typename SimplexTree::Siblings Siblings;
|
|
387
|
-
typedef typename SimplexTree::Vertex_handle Vertex_handle;
|
|
388
|
-
|
|
389
|
-
// any end() iterator
|
|
390
|
-
Simplex_tree_skeleton_simplex_iterator()
|
|
391
|
-
: sib_(nullptr),
|
|
392
|
-
st_(nullptr),
|
|
393
|
-
dim_skel_(0),
|
|
394
|
-
curr_dim_(0) {
|
|
395
|
-
}
|
|
396
|
-
|
|
397
|
-
Simplex_tree_skeleton_simplex_iterator(SimplexTree * st, int dim_skel)
|
|
398
|
-
: sib_(nullptr),
|
|
399
|
-
st_(st),
|
|
400
|
-
dim_skel_(dim_skel),
|
|
401
|
-
curr_dim_(0) {
|
|
402
|
-
if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
|
|
403
|
-
st_ = nullptr;
|
|
404
|
-
} else {
|
|
405
|
-
sh_ = st->root()->members().begin();
|
|
406
|
-
sib_ = st->root();
|
|
407
|
-
while (st->has_children(sh_) && curr_dim_ < dim_skel_) {
|
|
408
|
-
sib_ = sh_->second.children();
|
|
409
|
-
sh_ = sib_->members().begin();
|
|
410
|
-
++curr_dim_;
|
|
411
|
-
}
|
|
412
|
-
}
|
|
413
|
-
}
|
|
414
|
-
private:
|
|
415
|
-
friend class boost::iterator_core_access;
|
|
416
|
-
|
|
417
|
-
// valid when iterating along the SAME boundary.
|
|
418
|
-
bool equal(Simplex_tree_skeleton_simplex_iterator const& other) const {
|
|
419
|
-
if (other.st_ == nullptr) {
|
|
420
|
-
return (st_ == nullptr);
|
|
421
|
-
}
|
|
422
|
-
if (st_ == nullptr) {
|
|
423
|
-
return false;
|
|
424
|
-
}
|
|
425
|
-
return (&(sh_->second) == &(other.sh_->second));
|
|
426
|
-
}
|
|
427
|
-
|
|
428
|
-
Simplex_handle const& dereference() const {
|
|
429
|
-
return sh_;
|
|
430
|
-
}
|
|
431
|
-
|
|
432
|
-
// Depth first traversal of the skeleton.
|
|
433
|
-
void increment() {
|
|
434
|
-
++sh_;
|
|
435
|
-
if (sh_ == sib_->members().end()) {
|
|
436
|
-
if (sib_->oncles() == nullptr) {
|
|
437
|
-
st_ = nullptr;
|
|
438
|
-
return;
|
|
439
|
-
} // reach the end
|
|
440
|
-
sh_ = sib_->oncles()->members().find(sib_->parent());
|
|
441
|
-
sib_ = sib_->oncles();
|
|
442
|
-
--curr_dim_;
|
|
443
|
-
return;
|
|
444
|
-
}
|
|
445
|
-
while (st_->has_children(sh_) && curr_dim_ < dim_skel_) {
|
|
446
|
-
sib_ = sh_->second.children();
|
|
447
|
-
sh_ = sib_->members().begin();
|
|
448
|
-
++curr_dim_;
|
|
449
|
-
}
|
|
450
|
-
}
|
|
451
|
-
|
|
452
|
-
Simplex_handle sh_;
|
|
453
|
-
Siblings * sib_;
|
|
454
|
-
SimplexTree * st_;
|
|
455
|
-
int dim_skel_;
|
|
456
|
-
int curr_dim_;
|
|
457
|
-
};
|
|
458
|
-
|
|
459
|
-
/** @}*/ // end addtogroup simplex_tree
|
|
460
|
-
|
|
461
|
-
} // namespace Gudhi
|
|
462
|
-
|
|
463
|
-
#endif // SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
|
|
1
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/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
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* See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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* Author(s): Clément Maria
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*
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* Copyright (C) 2014 Inria
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*
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* Modification(s):
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* - 2022/04 Vincent Rouvreau: Add Simplex_tree_boundary_opposite_vertex_simplex_iterator for alpha and cech purpose
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* - YYYY/MM Author: Description of the modification
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*/
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#ifndef SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
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#define SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
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#include <gudhi/Debug_utils.h>
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#include <boost/iterator/iterator_facade.hpp>
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#include <vector>
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#include <utility> // for std::pair
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namespace Gudhi {
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/** \addtogroup simplex_tree
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* Iterators and range types for the Simplex_tree.
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* @{
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*/
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/** \brief Iterator over the vertices of a simplex
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* in a SimplexTree.
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*
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* Forward iterator, 'value_type' is SimplexTree::Vertex_handle.*/
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template<class SimplexTree>
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class Simplex_tree_simplex_vertex_iterator : public boost::iterator_facade<
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Simplex_tree_simplex_vertex_iterator<SimplexTree>,
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typename SimplexTree::Vertex_handle const, boost::forward_traversal_tag,
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typename SimplexTree::Vertex_handle const> {
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public:
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typedef typename SimplexTree::Simplex_handle Simplex_handle;
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typedef typename SimplexTree::Siblings Siblings;
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typedef typename SimplexTree::Vertex_handle Vertex_handle;
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explicit Simplex_tree_simplex_vertex_iterator(SimplexTree const* st)
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: // any end() iterator
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sib_(nullptr),
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v_(st->null_vertex()) {
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}
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Simplex_tree_simplex_vertex_iterator(SimplexTree const* st, Simplex_handle sh)
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: sib_(st->self_siblings(sh)),
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v_(sh->first) {
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}
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private:
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friend class boost::iterator_core_access;
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bool equal(Simplex_tree_simplex_vertex_iterator const &other) const {
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return sib_ == other.sib_ && v_ == other.v_;
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}
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Vertex_handle const& dereference() const {
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return v_;
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}
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void increment() {
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v_ = sib_->parent();
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sib_ = sib_->oncles();
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}
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Siblings * sib_;
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Vertex_handle v_;
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};
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/*---------------------------------------------------------------------------*/
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/** \brief Iterator over the simplices of the boundary of a
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* simplex.
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*
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* Forward iterator, value_type is SimplexTree::Simplex_handle.*/
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template<class SimplexTree>
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class Simplex_tree_boundary_simplex_iterator : public boost::iterator_facade<
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Simplex_tree_boundary_simplex_iterator<SimplexTree>,
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typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
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public:
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using Simplex_handle = typename SimplexTree::Simplex_handle;
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using Vertex_handle = typename SimplexTree::Vertex_handle;
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using Siblings = typename SimplexTree::Siblings;
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using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
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// For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is overwritten.
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Simplex_tree_boundary_simplex_iterator()
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: sib_(nullptr),
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st_(nullptr) {
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}
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// any end() iterator
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explicit Simplex_tree_boundary_simplex_iterator(SimplexTree * st)
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: last_(st->null_vertex()),
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next_(st->null_vertex()),
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sib_(nullptr),
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sh_(st->null_simplex()),
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st_(st) {
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}
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template<class SimplexHandle>
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Simplex_tree_boundary_simplex_iterator(SimplexTree * st, SimplexHandle sh)
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: last_(sh->first),
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next_(st->null_vertex()),
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sib_(nullptr),
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sh_(st->null_simplex()),
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st_(st) {
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// Only check once at the beginning instead of for every increment, as this is expensive.
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if constexpr (SimplexTree::Options::contiguous_vertices)
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GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
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Siblings * sib = st->self_siblings(sh);
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next_ = sib->parent();
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sib_ = sib->oncles();
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if (sib_ != nullptr) {
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if constexpr (SimplexTree::Options::contiguous_vertices &&
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!SimplexTree::Options::stable_simplex_handles)
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{
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if (sib_->oncles() == nullptr) // Only relevant for edges
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sh_ = sib_->members_.begin() + next_;
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else
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sh_ = sib_->find(next_);
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} else {
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sh_ = sib_->find(next_);
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}
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}
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}
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private:
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friend class boost::iterator_core_access;
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// valid when iterating along the SAME boundary.
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bool equal(Simplex_tree_boundary_simplex_iterator const& other) const {
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return sh_ == other.sh_;
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}
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Simplex_handle const& dereference() const {
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assert(sh_ != st_->null_simplex());
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return sh_;
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}
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void increment() {
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if (sib_ == nullptr) {
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sh_ = st_->null_simplex();
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return;
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}
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Siblings * for_sib = sib_;
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Siblings * new_sib = sib_->oncles();
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auto rit = suffix_.rbegin();
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if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
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if (new_sib == nullptr) {
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// We reached the root, use a short-cut to find a vertex.
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if (rit == suffix_.rend()) {
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// Segment, this vertex is the last boundary simplex
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sh_ = for_sib->members_.begin() + last_;
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sib_ = nullptr;
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return;
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} else {
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// Dim >= 2, initial step of the descent
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sh_ = for_sib->members_.begin() + *rit;
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for_sib = sh_->second.children();
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++rit;
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}
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}
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}
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for (; rit != suffix_.rend(); ++rit) {
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sh_ = for_sib->find(*rit);
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for_sib = sh_->second.children();
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}
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sh_ = for_sib->find(last_); // sh_ points to the right simplex now
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suffix_.push_back(next_);
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next_ = sib_->parent();
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sib_ = new_sib;
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}
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// Most of the storage should be moved to the range, iterators should be light.
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Vertex_handle last_; // last vertex of the simplex
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Vertex_handle next_; // next vertex to push in suffix_
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Static_vertex_vector suffix_;
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Siblings * sib_; // where the next search will start from
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Simplex_handle sh_; // current Simplex_handle in the boundary
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SimplexTree * st_; // simplex containing the simplicial complex
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};
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/** \brief Iterator over the simplices of the boundary of a simplex and their opposite vertices.
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*
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* Forward iterator, value_type is std::pair<SimplexTree::Simplex_handle, SimplexTree::Vertex_handle>.*/
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template<class SimplexTree>
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class Simplex_tree_boundary_opposite_vertex_simplex_iterator : public boost::iterator_facade<
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Simplex_tree_boundary_opposite_vertex_simplex_iterator<SimplexTree>,
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std::pair<typename SimplexTree::Simplex_handle, typename SimplexTree::Vertex_handle> const, boost::forward_traversal_tag> {
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public:
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using Simplex_handle = typename SimplexTree::Simplex_handle;
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using Vertex_handle = typename SimplexTree::Vertex_handle;
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using Siblings = typename SimplexTree::Siblings;
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using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
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// For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is
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// overwritten.
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Simplex_tree_boundary_opposite_vertex_simplex_iterator()
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: sib_(nullptr),
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st_(nullptr) {
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}
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// any end() iterator
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explicit Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st)
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: last_(st->null_vertex()),
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next_(st->null_vertex()),
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sib_(nullptr),
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baov_(st->null_simplex(), st->null_vertex()),
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st_(st) {
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}
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template<class SimplexHandle>
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Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st, SimplexHandle sh)
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: last_(sh->first),
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next_(st->null_vertex()),
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sib_(nullptr),
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baov_(st->null_simplex(), sh->first),
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st_(st) {
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// Only check once at the beginning instead of for every increment, as this is expensive.
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if constexpr (SimplexTree::Options::contiguous_vertices)
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GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
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Siblings * sib = st->self_siblings(sh);
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next_ = sib->parent();
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sib_ = sib->oncles();
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if (sib_ != nullptr) {
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if constexpr (SimplexTree::Options::contiguous_vertices &&
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!SimplexTree::Options::stable_simplex_handles) {
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if (sib_->oncles() == nullptr)
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// Only relevant for edges
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baov_.first = sib_->members_.begin() + next_;
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else
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baov_.first = sib_->find(next_);
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} else {
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baov_.first = sib_->find(next_);
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}
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}
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}
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private:
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friend class boost::iterator_core_access;
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// valid when iterating along the SAME boundary.
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bool equal(Simplex_tree_boundary_opposite_vertex_simplex_iterator const& other) const {
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return (baov_.first == other.baov_.first);
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}
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std::pair<Simplex_handle, Vertex_handle> const& dereference() const {
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return baov_;
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}
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void increment() {
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if (sib_ == nullptr) {
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baov_.first = st_->null_simplex();
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return; // ------>>
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}
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Siblings * for_sib = sib_;
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Siblings * new_sib = sib_->oncles();
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auto rit = suffix_.rbegin();
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if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
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if (new_sib == nullptr) {
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// We reached the root, use a short-cut to find a vertex.
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if (rit == suffix_.rend()) {
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baov_.second = baov_.first->first;
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// Segment, this vertex is the last boundary simplex
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baov_.first = for_sib->members_.begin() + last_;
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sib_ = nullptr;
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return;
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} else {
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// Dim >= 2, initial step of the descent
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baov_.first = for_sib->members_.begin() + *rit;
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for_sib = baov_.first->second.children();
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++rit;
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}
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}
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}
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281
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+
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+
for (; rit != suffix_.rend(); ++rit) {
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+
baov_.first = for_sib->find(*rit);
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for_sib = baov_.first->second.children();
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+
}
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baov_.first = for_sib->find(last_); // baov_.first points to the right simplex now
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+
suffix_.push_back(next_);
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+
next_ = sib_->parent();
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+
sib_ = new_sib;
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+
baov_.second = suffix_.back();
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291
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+
}
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292
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+
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293
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+
// Most of the storage should be moved to the range, iterators should be light.
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294
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+
Vertex_handle last_; // last vertex of the simplex
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295
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+
Vertex_handle next_; // next vertex to push in suffix_
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Static_vertex_vector suffix_;
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297
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Siblings * sib_; // where the next search will start from
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+
std::pair<Simplex_handle, Vertex_handle> baov_; // a pair containing the current Simplex_handle in the boundary and its opposite vertex
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299
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+
SimplexTree * st_; // simplex containing the simplicial complex
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};
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301
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+
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302
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/*---------------------------------------------------------------------------*/
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|
303
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+
/** \brief Iterator over the simplices of a simplicial complex.
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|
304
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+
*
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|
305
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+
* Forward iterator, value_type is SimplexTree::Simplex_handle.*/
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|
306
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+
template<class SimplexTree>
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|
307
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+
class Simplex_tree_complex_simplex_iterator : public boost::iterator_facade<
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|
308
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+
Simplex_tree_complex_simplex_iterator<SimplexTree>,
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|
309
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+
typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
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|
310
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+
public:
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311
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+
typedef typename SimplexTree::Simplex_handle Simplex_handle;
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312
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+
typedef typename SimplexTree::Siblings Siblings;
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313
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+
typedef typename SimplexTree::Vertex_handle Vertex_handle;
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314
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+
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315
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+
// any end() iterator
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316
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+
Simplex_tree_complex_simplex_iterator()
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|
317
|
+
: sib_(nullptr),
|
|
318
|
+
st_(nullptr) {
|
|
319
|
+
}
|
|
320
|
+
|
|
321
|
+
explicit Simplex_tree_complex_simplex_iterator(SimplexTree * st)
|
|
322
|
+
: sib_(nullptr),
|
|
323
|
+
st_(st) {
|
|
324
|
+
if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
|
|
325
|
+
st_ = nullptr;
|
|
326
|
+
} else {
|
|
327
|
+
sh_ = st->root()->members().begin();
|
|
328
|
+
sib_ = st->root();
|
|
329
|
+
while (st->has_children(sh_)) {
|
|
330
|
+
sib_ = sh_->second.children();
|
|
331
|
+
sh_ = sib_->members().begin();
|
|
332
|
+
}
|
|
333
|
+
}
|
|
334
|
+
}
|
|
335
|
+
private:
|
|
336
|
+
friend class boost::iterator_core_access;
|
|
337
|
+
|
|
338
|
+
// valid when iterating along the SAME boundary.
|
|
339
|
+
bool equal(Simplex_tree_complex_simplex_iterator const& other) const {
|
|
340
|
+
if (other.st_ == nullptr) {
|
|
341
|
+
return (st_ == nullptr);
|
|
342
|
+
}
|
|
343
|
+
if (st_ == nullptr) {
|
|
344
|
+
return false;
|
|
345
|
+
}
|
|
346
|
+
return (&(sh_->second) == &(other.sh_->second));
|
|
347
|
+
}
|
|
348
|
+
|
|
349
|
+
Simplex_handle const& dereference() const {
|
|
350
|
+
return sh_;
|
|
351
|
+
}
|
|
352
|
+
|
|
353
|
+
// Depth first traversal.
|
|
354
|
+
void increment() {
|
|
355
|
+
++sh_;
|
|
356
|
+
if (sh_ == sib_->members().end()) {
|
|
357
|
+
if (sib_->oncles() == nullptr) {
|
|
358
|
+
st_ = nullptr;
|
|
359
|
+
return;
|
|
360
|
+
} // reach the end
|
|
361
|
+
sh_ = sib_->oncles()->members().find(sib_->parent());
|
|
362
|
+
sib_ = sib_->oncles();
|
|
363
|
+
return;
|
|
364
|
+
}
|
|
365
|
+
while (st_->has_children(sh_)) {
|
|
366
|
+
sib_ = sh_->second.children();
|
|
367
|
+
sh_ = sib_->members().begin();
|
|
368
|
+
}
|
|
369
|
+
}
|
|
370
|
+
|
|
371
|
+
Simplex_handle sh_;
|
|
372
|
+
Siblings * sib_;
|
|
373
|
+
SimplexTree * st_;
|
|
374
|
+
};
|
|
375
|
+
|
|
376
|
+
/** \brief Iterator over the simplices of the skeleton of a given
|
|
377
|
+
* dimension of the simplicial complex.
|
|
378
|
+
*
|
|
379
|
+
* Forward iterator, value_type is SimplexTree::Simplex_handle.*/
|
|
380
|
+
template<class SimplexTree>
|
|
381
|
+
class Simplex_tree_skeleton_simplex_iterator : public boost::iterator_facade<
|
|
382
|
+
Simplex_tree_skeleton_simplex_iterator<SimplexTree>,
|
|
383
|
+
typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
|
|
384
|
+
public:
|
|
385
|
+
typedef typename SimplexTree::Simplex_handle Simplex_handle;
|
|
386
|
+
typedef typename SimplexTree::Siblings Siblings;
|
|
387
|
+
typedef typename SimplexTree::Vertex_handle Vertex_handle;
|
|
388
|
+
|
|
389
|
+
// any end() iterator
|
|
390
|
+
Simplex_tree_skeleton_simplex_iterator()
|
|
391
|
+
: sib_(nullptr),
|
|
392
|
+
st_(nullptr),
|
|
393
|
+
dim_skel_(0),
|
|
394
|
+
curr_dim_(0) {
|
|
395
|
+
}
|
|
396
|
+
|
|
397
|
+
Simplex_tree_skeleton_simplex_iterator(SimplexTree * st, int dim_skel)
|
|
398
|
+
: sib_(nullptr),
|
|
399
|
+
st_(st),
|
|
400
|
+
dim_skel_(dim_skel),
|
|
401
|
+
curr_dim_(0) {
|
|
402
|
+
if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
|
|
403
|
+
st_ = nullptr;
|
|
404
|
+
} else {
|
|
405
|
+
sh_ = st->root()->members().begin();
|
|
406
|
+
sib_ = st->root();
|
|
407
|
+
while (st->has_children(sh_) && curr_dim_ < dim_skel_) {
|
|
408
|
+
sib_ = sh_->second.children();
|
|
409
|
+
sh_ = sib_->members().begin();
|
|
410
|
+
++curr_dim_;
|
|
411
|
+
}
|
|
412
|
+
}
|
|
413
|
+
}
|
|
414
|
+
private:
|
|
415
|
+
friend class boost::iterator_core_access;
|
|
416
|
+
|
|
417
|
+
// valid when iterating along the SAME boundary.
|
|
418
|
+
bool equal(Simplex_tree_skeleton_simplex_iterator const& other) const {
|
|
419
|
+
if (other.st_ == nullptr) {
|
|
420
|
+
return (st_ == nullptr);
|
|
421
|
+
}
|
|
422
|
+
if (st_ == nullptr) {
|
|
423
|
+
return false;
|
|
424
|
+
}
|
|
425
|
+
return (&(sh_->second) == &(other.sh_->second));
|
|
426
|
+
}
|
|
427
|
+
|
|
428
|
+
Simplex_handle const& dereference() const {
|
|
429
|
+
return sh_;
|
|
430
|
+
}
|
|
431
|
+
|
|
432
|
+
// Depth first traversal of the skeleton.
|
|
433
|
+
void increment() {
|
|
434
|
+
++sh_;
|
|
435
|
+
if (sh_ == sib_->members().end()) {
|
|
436
|
+
if (sib_->oncles() == nullptr) {
|
|
437
|
+
st_ = nullptr;
|
|
438
|
+
return;
|
|
439
|
+
} // reach the end
|
|
440
|
+
sh_ = sib_->oncles()->members().find(sib_->parent());
|
|
441
|
+
sib_ = sib_->oncles();
|
|
442
|
+
--curr_dim_;
|
|
443
|
+
return;
|
|
444
|
+
}
|
|
445
|
+
while (st_->has_children(sh_) && curr_dim_ < dim_skel_) {
|
|
446
|
+
sib_ = sh_->second.children();
|
|
447
|
+
sh_ = sib_->members().begin();
|
|
448
|
+
++curr_dim_;
|
|
449
|
+
}
|
|
450
|
+
}
|
|
451
|
+
|
|
452
|
+
Simplex_handle sh_;
|
|
453
|
+
Siblings * sib_;
|
|
454
|
+
SimplexTree * st_;
|
|
455
|
+
int dim_skel_;
|
|
456
|
+
int curr_dim_;
|
|
457
|
+
};
|
|
458
|
+
|
|
459
|
+
/** @}*/ // end addtogroup simplex_tree
|
|
460
|
+
|
|
461
|
+
} // namespace Gudhi
|
|
462
|
+
|
|
463
|
+
#endif // SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
|