multipers 2.2.3__cp310-cp310-win_amd64.whl → 2.3.1__cp310-cp310-win_amd64.whl

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  1. multipers/__init__.py +33 -31
  2. multipers/_signed_measure_meta.py +430 -430
  3. multipers/_slicer_meta.py +211 -212
  4. multipers/data/MOL2.py +458 -458
  5. multipers/data/UCR.py +18 -18
  6. multipers/data/graphs.py +466 -466
  7. multipers/data/immuno_regions.py +27 -27
  8. multipers/data/pytorch2simplextree.py +90 -90
  9. multipers/data/shape3d.py +101 -101
  10. multipers/data/synthetic.py +113 -111
  11. multipers/distances.py +198 -198
  12. multipers/filtration_conversions.pxd.tp +84 -84
  13. multipers/filtrations/__init__.py +18 -0
  14. multipers/{ml/convolutions.py → filtrations/density.py} +563 -520
  15. multipers/filtrations/filtrations.py +289 -0
  16. multipers/filtrations.pxd +224 -224
  17. multipers/function_rips.cp310-win_amd64.pyd +0 -0
  18. multipers/function_rips.pyx +105 -105
  19. multipers/grids.cp310-win_amd64.pyd +0 -0
  20. multipers/grids.pyx +350 -350
  21. multipers/gudhi/Persistence_slices_interface.h +132 -132
  22. multipers/gudhi/Simplex_tree_interface.h +239 -245
  23. multipers/gudhi/Simplex_tree_multi_interface.h +516 -561
  24. multipers/gudhi/cubical_to_boundary.h +59 -59
  25. multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -450
  26. multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -1070
  27. multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -579
  28. multipers/gudhi/gudhi/Debug_utils.h +45 -45
  29. multipers/gudhi/gudhi/Fields/Multi_field.h +484 -484
  30. multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -455
  31. multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -450
  32. multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -531
  33. multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -507
  34. multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -531
  35. multipers/gudhi/gudhi/Fields/Z2_field.h +355 -355
  36. multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -376
  37. multipers/gudhi/gudhi/Fields/Zp_field.h +420 -420
  38. multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -400
  39. multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -418
  40. multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -337
  41. multipers/gudhi/gudhi/Matrix.h +2107 -2107
  42. multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -1038
  43. multipers/gudhi/gudhi/Multi_persistence/Box.h +171 -171
  44. multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -282
  45. multipers/gudhi/gudhi/Off_reader.h +173 -173
  46. multipers/gudhi/gudhi/One_critical_filtration.h +1433 -1431
  47. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -769
  48. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -686
  49. multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -842
  50. multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -1350
  51. multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -1105
  52. multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -859
  53. multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -910
  54. multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -139
  55. multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -230
  56. multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -211
  57. multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -60
  58. multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -60
  59. multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -136
  60. multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -190
  61. multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -616
  62. multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -150
  63. multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -106
  64. multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -219
  65. multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -327
  66. multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -1140
  67. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -934
  68. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -934
  69. multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -980
  70. multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -1092
  71. multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -192
  72. multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -921
  73. multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -1093
  74. multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -1012
  75. multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -1244
  76. multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -186
  77. multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -164
  78. multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -156
  79. multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -376
  80. multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -540
  81. multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -118
  82. multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -173
  83. multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -128
  84. multipers/gudhi/gudhi/Persistent_cohomology.h +745 -745
  85. multipers/gudhi/gudhi/Points_off_io.h +171 -171
  86. multipers/gudhi/gudhi/Simple_object_pool.h +69 -69
  87. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -463
  88. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -83
  89. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -106
  90. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -277
  91. multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -62
  92. multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -27
  93. multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -62
  94. multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -157
  95. multipers/gudhi/gudhi/Simplex_tree.h +2794 -2794
  96. multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -163
  97. multipers/gudhi/gudhi/distance_functions.h +62 -62
  98. multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -104
  99. multipers/gudhi/gudhi/persistence_interval.h +253 -253
  100. multipers/gudhi/gudhi/persistence_matrix_options.h +170 -170
  101. multipers/gudhi/gudhi/reader_utils.h +367 -367
  102. multipers/gudhi/mma_interface_coh.h +256 -255
  103. multipers/gudhi/mma_interface_h0.h +223 -231
  104. multipers/gudhi/mma_interface_matrix.h +291 -282
  105. multipers/gudhi/naive_merge_tree.h +536 -575
  106. multipers/gudhi/scc_io.h +310 -289
  107. multipers/gudhi/truc.h +957 -888
  108. multipers/io.cp310-win_amd64.pyd +0 -0
  109. multipers/io.pyx +714 -711
  110. multipers/ml/accuracies.py +90 -90
  111. multipers/ml/invariants_with_persistable.py +79 -79
  112. multipers/ml/kernels.py +176 -176
  113. multipers/ml/mma.py +713 -714
  114. multipers/ml/one.py +472 -472
  115. multipers/ml/point_clouds.py +352 -346
  116. multipers/ml/signed_measures.py +1589 -1589
  117. multipers/ml/sliced_wasserstein.py +461 -461
  118. multipers/ml/tools.py +113 -113
  119. multipers/mma_structures.cp310-win_amd64.pyd +0 -0
  120. multipers/mma_structures.pxd +127 -127
  121. multipers/mma_structures.pyx +4 -8
  122. multipers/mma_structures.pyx.tp +1083 -1085
  123. multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -93
  124. multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -97
  125. multipers/multi_parameter_rank_invariant/function_rips.h +322 -322
  126. multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -769
  127. multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -148
  128. multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -369
  129. multipers/multiparameter_edge_collapse.py +41 -41
  130. multipers/multiparameter_module_approximation/approximation.h +2298 -2295
  131. multipers/multiparameter_module_approximation/combinatory.h +129 -129
  132. multipers/multiparameter_module_approximation/debug.h +107 -107
  133. multipers/multiparameter_module_approximation/format_python-cpp.h +286 -286
  134. multipers/multiparameter_module_approximation/heap_column.h +238 -238
  135. multipers/multiparameter_module_approximation/images.h +79 -79
  136. multipers/multiparameter_module_approximation/list_column.h +174 -174
  137. multipers/multiparameter_module_approximation/list_column_2.h +232 -232
  138. multipers/multiparameter_module_approximation/ru_matrix.h +347 -347
  139. multipers/multiparameter_module_approximation/set_column.h +135 -135
  140. multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -36
  141. multipers/multiparameter_module_approximation/unordered_set_column.h +166 -166
  142. multipers/multiparameter_module_approximation/utilities.h +403 -419
  143. multipers/multiparameter_module_approximation/vector_column.h +223 -223
  144. multipers/multiparameter_module_approximation/vector_matrix.h +331 -331
  145. multipers/multiparameter_module_approximation/vineyards.h +464 -464
  146. multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -649
  147. multipers/multiparameter_module_approximation.cp310-win_amd64.pyd +0 -0
  148. multipers/multiparameter_module_approximation.pyx +218 -217
  149. multipers/pickle.py +90 -53
  150. multipers/plots.py +342 -334
  151. multipers/point_measure.cp310-win_amd64.pyd +0 -0
  152. multipers/point_measure.pyx +322 -320
  153. multipers/simplex_tree_multi.cp310-win_amd64.pyd +0 -0
  154. multipers/simplex_tree_multi.pxd +133 -133
  155. multipers/simplex_tree_multi.pyx +115 -48
  156. multipers/simplex_tree_multi.pyx.tp +1947 -1935
  157. multipers/slicer.cp310-win_amd64.pyd +0 -0
  158. multipers/slicer.pxd +301 -120
  159. multipers/slicer.pxd.tp +218 -214
  160. multipers/slicer.pyx +1570 -507
  161. multipers/slicer.pyx.tp +931 -914
  162. multipers/tensor/tensor.h +672 -672
  163. multipers/tensor.pxd +13 -13
  164. multipers/test.pyx +44 -44
  165. multipers/tests/__init__.py +57 -57
  166. multipers/torch/diff_grids.py +217 -217
  167. multipers/torch/rips_density.py +310 -304
  168. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/LICENSE +21 -21
  169. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/METADATA +21 -11
  170. multipers-2.3.1.dist-info/RECORD +182 -0
  171. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/WHEEL +1 -1
  172. multipers/tests/test_diff_helper.py +0 -73
  173. multipers/tests/test_hilbert_function.py +0 -82
  174. multipers/tests/test_mma.py +0 -83
  175. multipers/tests/test_point_clouds.py +0 -49
  176. multipers/tests/test_python-cpp_conversion.py +0 -82
  177. multipers/tests/test_signed_betti.py +0 -181
  178. multipers/tests/test_signed_measure.py +0 -89
  179. multipers/tests/test_simplextreemulti.py +0 -221
  180. multipers/tests/test_slicer.py +0 -221
  181. multipers-2.2.3.dist-info/RECORD +0 -189
  182. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/top_level.txt +0 -0
@@ -1,186 +1,186 @@
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- /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
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- * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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- * Author(s): Hannah Schreiber
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- *
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- * Copyright (C) 2022-24 Inria
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- *
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- * Modification(s):
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- * - YYYY/MM Author: Description of the modification
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- */
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-
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- /**
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- * @file matrix_dimension_holders.h
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- * @author Hannah Schreiber
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- * @brief Contains the @ref Gudhi::persistence_matrix::Matrix_max_dimension_holder
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- * @ref Gudhi::persistence_matrix::Matrix_all_dimension_holder classes
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- * and the @ref Gudhi::persistence_matrix::Dummy_matrix_dimension_holder structure.
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- */
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-
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- #ifndef PM_MATRIX_DIM_HOLDER_H
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- #define PM_MATRIX_DIM_HOLDER_H
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-
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- #include <utility> //std::swap, std::move & std::exchange
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- #include <vector>
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-
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- namespace Gudhi {
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- namespace persistence_matrix {
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-
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- /**
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- * @ingroup persistence_matrix
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- *
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- * @brief Empty structure.
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- * Inherited instead of @ref Matrix_max_dimension_holder or @ref Matrix_all_dimension_holder, when the maximal
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- * dimension of a matrix is not stored.
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- */
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- struct Dummy_matrix_dimension_holder
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- {
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- template <typename Dimension>
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- Dummy_matrix_dimension_holder([[maybe_unused]] Dimension maximalDimension) {}
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-
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- friend void swap([[maybe_unused]] Dummy_matrix_dimension_holder& d1,
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- [[maybe_unused]] Dummy_matrix_dimension_holder& d2) {}
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- };
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-
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- /**
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- * @ingroup persistence_matrix
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- *
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- * @brief Class managing the maximal dimension of a cell represented in the inheriting matrix, when the option of
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- * cell removal is not enabled.
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- *
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- * @tparam Dimension Dimension value type. Has to be an integer type.
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- * If unsigned, the maximal value of the type should not be attained during a run.
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- */
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- template <typename Dimension>
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- class Matrix_max_dimension_holder
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- {
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- public:
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- /**
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- * @brief Default constructor. If a dimension is specified, stores it as the maximal value.
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- *
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- * @param maximalDimension Value of the maximal dimension. Has to be either positive or -1. Default value: -1.
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- */
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- Matrix_max_dimension_holder(Dimension maximalDimension = -1) : maxDim_(maximalDimension){};
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- /**
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- * @brief Copy constructor.
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- *
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- * @param toCopy Matrix to copy.
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- */
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- Matrix_max_dimension_holder(const Matrix_max_dimension_holder& toCopy) : maxDim_(toCopy.maxDim_){};
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- /**
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- * @brief Move constructor.
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- *
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- * @param other Matrix to move.
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- */
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- Matrix_max_dimension_holder(Matrix_max_dimension_holder&& other) noexcept
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- : maxDim_(std::exchange(other.maxDim_, -1)){};
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-
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- /**
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- * @brief Returns the maximal dimension of a cell represented in the matrix.
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- *
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- * @return The maximal dimension.
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- */
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- Dimension get_max_dimension() const { return maxDim_; };
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-
84
- /**
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- * @brief Assign operator.
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- */
87
- Matrix_max_dimension_holder& operator=(const Matrix_max_dimension_holder& other) {
88
- std::swap(maxDim_, other.maxDim_);
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- return *this;
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- };
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- /**
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- * @brief Swap operator.
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- */
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- friend void swap(Matrix_max_dimension_holder& matrix1, Matrix_max_dimension_holder& matrix2) {
95
- std::swap(matrix1.maxDim_, matrix2.maxDim_);
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- }
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-
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- protected:
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- Dimension maxDim_; /**< Current maximal dimension. */
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-
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- void update_up(Dimension dimension) {
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- if (maxDim_ == -1 || maxDim_ < dimension) maxDim_ = dimension;
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- };
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- };
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-
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- /**
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- * @ingroup persistence_matrix
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- *
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- * @brief Class managing the maximal dimension of a cell represented in the inheriting matrix, when the option of
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- * cell removal is enabled.
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- *
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- * @tparam Dimension Dimension value type. Has to be an integer type.
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- * If unsigned, the maximal value of the type should not be attained during a run.
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- */
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- template <typename Dimension>
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- class Matrix_all_dimension_holder
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- {
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- public:
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- /**
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- * @brief Default constructor. If a dimension is specified, stores it as the maximal value.
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- *
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- * @param maximalDimension Value of the maximal dimension. Has to be either positive or -1. Default value: -1.
123
- */
124
- Matrix_all_dimension_holder(Dimension maximalDimension = -1)
125
- : dimensions_(maximalDimension < 0 ? 0 : maximalDimension + 1, 0), maxDim_(maximalDimension) {
126
- if (maxDim_ != -1) dimensions_[maxDim_] = 1;
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- };
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- /**
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- * @brief Copy constructor.
130
- *
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- * @param toCopy Matrix to copy.
132
- */
133
- Matrix_all_dimension_holder(const Matrix_all_dimension_holder& toCopy)
134
- : dimensions_(toCopy.dimensions_), maxDim_(toCopy.maxDim_){};
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- /**
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- * @brief Move constructor.
137
- *
138
- * @param other Matrix to move.
139
- */
140
- Matrix_all_dimension_holder(Matrix_all_dimension_holder&& other) noexcept
141
- : dimensions_(std::move(other.dimensions_)), maxDim_(std::exchange(other.maxDim_, -1)){};
142
-
143
- /**
144
- * @brief Returns the maximal dimension of a cell represented in the matrix.
145
- *
146
- * @return The maximal dimension.
147
- */
148
- Dimension get_max_dimension() const { return maxDim_; };
149
-
150
- /**
151
- * @brief Assign operator.
152
- */
153
- Matrix_all_dimension_holder& operator=(Matrix_all_dimension_holder other) {
154
- std::swap(maxDim_, other.maxDim_);
155
- dimensions_.swap(other.dimensions_);
156
- return *this;
157
- };
158
- /**
159
- * @brief Swap operator.
160
- */
161
- friend void swap(Matrix_all_dimension_holder& matrix1, Matrix_all_dimension_holder& matrix2) {
162
- std::swap(matrix1.maxDim_, matrix2.maxDim_);
163
- matrix1.dimensions_.swap(matrix2.dimensions_);
164
- }
165
-
166
- protected:
167
- std::vector<unsigned int> dimensions_; /**< Number of cells by dimension. */
168
- Dimension maxDim_; /**< Current maximal dimension. */
169
-
170
- void update_up(unsigned int dimension) {
171
- if (dimensions_.size() <= dimension) dimensions_.resize(dimension + 1, 0);
172
- ++(dimensions_[dimension]);
173
- maxDim_ = dimensions_.size() - 1;
174
- };
175
-
176
- void update_down(unsigned int dimension) {
177
- --(dimensions_[dimension]); // assumes dimension already exists and is not 0
178
- while (!dimensions_.empty() && dimensions_.back() == 0) dimensions_.pop_back();
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- maxDim_ = dimensions_.size() - 1;
180
- };
181
- };
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-
183
- } // namespace persistence_matrix
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- } // namespace Gudhi
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-
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- #endif // PM_MATRIX_DIM_HOLDER_H
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+ /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
2
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
3
+ * Author(s): Hannah Schreiber
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+ *
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+ * Copyright (C) 2022-24 Inria
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+ *
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+ * Modification(s):
8
+ * - YYYY/MM Author: Description of the modification
9
+ */
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+
11
+ /**
12
+ * @file matrix_dimension_holders.h
13
+ * @author Hannah Schreiber
14
+ * @brief Contains the @ref Gudhi::persistence_matrix::Matrix_max_dimension_holder
15
+ * @ref Gudhi::persistence_matrix::Matrix_all_dimension_holder classes
16
+ * and the @ref Gudhi::persistence_matrix::Dummy_matrix_dimension_holder structure.
17
+ */
18
+
19
+ #ifndef PM_MATRIX_DIM_HOLDER_H
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+ #define PM_MATRIX_DIM_HOLDER_H
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+
22
+ #include <utility> //std::swap, std::move & std::exchange
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+ #include <vector>
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+
25
+ namespace Gudhi {
26
+ namespace persistence_matrix {
27
+
28
+ /**
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+ * @ingroup persistence_matrix
30
+ *
31
+ * @brief Empty structure.
32
+ * Inherited instead of @ref Matrix_max_dimension_holder or @ref Matrix_all_dimension_holder, when the maximal
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+ * dimension of a matrix is not stored.
34
+ */
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+ struct Dummy_matrix_dimension_holder
36
+ {
37
+ template <typename Dimension>
38
+ Dummy_matrix_dimension_holder([[maybe_unused]] Dimension maximalDimension) {}
39
+
40
+ friend void swap([[maybe_unused]] Dummy_matrix_dimension_holder& d1,
41
+ [[maybe_unused]] Dummy_matrix_dimension_holder& d2) {}
42
+ };
43
+
44
+ /**
45
+ * @ingroup persistence_matrix
46
+ *
47
+ * @brief Class managing the maximal dimension of a cell represented in the inheriting matrix, when the option of
48
+ * cell removal is not enabled.
49
+ *
50
+ * @tparam Dimension Dimension value type. Has to be an integer type.
51
+ * If unsigned, the maximal value of the type should not be attained during a run.
52
+ */
53
+ template <typename Dimension>
54
+ class Matrix_max_dimension_holder
55
+ {
56
+ public:
57
+ /**
58
+ * @brief Default constructor. If a dimension is specified, stores it as the maximal value.
59
+ *
60
+ * @param maximalDimension Value of the maximal dimension. Has to be either positive or -1. Default value: -1.
61
+ */
62
+ Matrix_max_dimension_holder(Dimension maximalDimension = -1) : maxDim_(maximalDimension){};
63
+ /**
64
+ * @brief Copy constructor.
65
+ *
66
+ * @param toCopy Matrix to copy.
67
+ */
68
+ Matrix_max_dimension_holder(const Matrix_max_dimension_holder& toCopy) : maxDim_(toCopy.maxDim_){};
69
+ /**
70
+ * @brief Move constructor.
71
+ *
72
+ * @param other Matrix to move.
73
+ */
74
+ Matrix_max_dimension_holder(Matrix_max_dimension_holder&& other) noexcept
75
+ : maxDim_(std::exchange(other.maxDim_, -1)){};
76
+
77
+ /**
78
+ * @brief Returns the maximal dimension of a cell represented in the matrix.
79
+ *
80
+ * @return The maximal dimension.
81
+ */
82
+ Dimension get_max_dimension() const { return maxDim_; };
83
+
84
+ /**
85
+ * @brief Assign operator.
86
+ */
87
+ Matrix_max_dimension_holder& operator=(const Matrix_max_dimension_holder& other) {
88
+ std::swap(maxDim_, other.maxDim_);
89
+ return *this;
90
+ };
91
+ /**
92
+ * @brief Swap operator.
93
+ */
94
+ friend void swap(Matrix_max_dimension_holder& matrix1, Matrix_max_dimension_holder& matrix2) {
95
+ std::swap(matrix1.maxDim_, matrix2.maxDim_);
96
+ }
97
+
98
+ protected:
99
+ Dimension maxDim_; /**< Current maximal dimension. */
100
+
101
+ void update_up(Dimension dimension) {
102
+ if (maxDim_ == -1 || maxDim_ < dimension) maxDim_ = dimension;
103
+ };
104
+ };
105
+
106
+ /**
107
+ * @ingroup persistence_matrix
108
+ *
109
+ * @brief Class managing the maximal dimension of a cell represented in the inheriting matrix, when the option of
110
+ * cell removal is enabled.
111
+ *
112
+ * @tparam Dimension Dimension value type. Has to be an integer type.
113
+ * If unsigned, the maximal value of the type should not be attained during a run.
114
+ */
115
+ template <typename Dimension>
116
+ class Matrix_all_dimension_holder
117
+ {
118
+ public:
119
+ /**
120
+ * @brief Default constructor. If a dimension is specified, stores it as the maximal value.
121
+ *
122
+ * @param maximalDimension Value of the maximal dimension. Has to be either positive or -1. Default value: -1.
123
+ */
124
+ Matrix_all_dimension_holder(Dimension maximalDimension = -1)
125
+ : dimensions_(maximalDimension < 0 ? 0 : maximalDimension + 1, 0), maxDim_(maximalDimension) {
126
+ if (maxDim_ != -1) dimensions_[maxDim_] = 1;
127
+ };
128
+ /**
129
+ * @brief Copy constructor.
130
+ *
131
+ * @param toCopy Matrix to copy.
132
+ */
133
+ Matrix_all_dimension_holder(const Matrix_all_dimension_holder& toCopy)
134
+ : dimensions_(toCopy.dimensions_), maxDim_(toCopy.maxDim_){};
135
+ /**
136
+ * @brief Move constructor.
137
+ *
138
+ * @param other Matrix to move.
139
+ */
140
+ Matrix_all_dimension_holder(Matrix_all_dimension_holder&& other) noexcept
141
+ : dimensions_(std::move(other.dimensions_)), maxDim_(std::exchange(other.maxDim_, -1)){};
142
+
143
+ /**
144
+ * @brief Returns the maximal dimension of a cell represented in the matrix.
145
+ *
146
+ * @return The maximal dimension.
147
+ */
148
+ Dimension get_max_dimension() const { return maxDim_; };
149
+
150
+ /**
151
+ * @brief Assign operator.
152
+ */
153
+ Matrix_all_dimension_holder& operator=(Matrix_all_dimension_holder other) {
154
+ std::swap(maxDim_, other.maxDim_);
155
+ dimensions_.swap(other.dimensions_);
156
+ return *this;
157
+ };
158
+ /**
159
+ * @brief Swap operator.
160
+ */
161
+ friend void swap(Matrix_all_dimension_holder& matrix1, Matrix_all_dimension_holder& matrix2) {
162
+ std::swap(matrix1.maxDim_, matrix2.maxDim_);
163
+ matrix1.dimensions_.swap(matrix2.dimensions_);
164
+ }
165
+
166
+ protected:
167
+ std::vector<unsigned int> dimensions_; /**< Number of cells by dimension. */
168
+ Dimension maxDim_; /**< Current maximal dimension. */
169
+
170
+ void update_up(unsigned int dimension) {
171
+ if (dimensions_.size() <= dimension) dimensions_.resize(dimension + 1, 0);
172
+ ++(dimensions_[dimension]);
173
+ maxDim_ = dimensions_.size() - 1;
174
+ };
175
+
176
+ void update_down(unsigned int dimension) {
177
+ --(dimensions_[dimension]); // assumes dimension already exists and is not 0
178
+ while (!dimensions_.empty() && dimensions_.back() == 0) dimensions_.pop_back();
179
+ maxDim_ = dimensions_.size() - 1;
180
+ };
181
+ };
182
+
183
+ } // namespace persistence_matrix
184
+ } // namespace Gudhi
185
+
186
+ #endif // PM_MATRIX_DIM_HOLDER_H