okstra 0.107.2 → 0.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
- package/runtime/prompts/profiles/_common-contract.md +3 -2
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_ctl/session.py +44 -0
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_token_usage/claude.py +15 -9
- package/runtime/python/okstra_token_usage/cli.py +23 -0
- package/runtime/python/okstra_token_usage/collect.py +163 -4
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +178 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +611 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +356 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +662 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +425 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +300 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gl1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gw1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/netgen-2.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_gomory_hu.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow.py +573 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow_large_graph.py +155 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_mincost.py +475 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_networksimplex.py +481 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/wlm3.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +194 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +435 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +483 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +1306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +336 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +1262 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +352 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +308 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_ismags.py +719 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphism.py +103 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphvf2.py +490 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_match_helpers.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_temporalisomorphvf2.py +212 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_tree_isomorphism.py +202 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp.py +1655 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp_helpers.py +3118 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2userfunc.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +1102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +2 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +337 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +498 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_hits.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_pagerank.py +213 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +687 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +1148 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +27 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +738 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/tests/test_contraction.py +544 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +219 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +155 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +324 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +468 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +633 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_all.py +328 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_binary.py +451 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_product.py +491 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_unary.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +464 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +1463 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +98 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +239 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +716 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_astar.py +254 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense.py +212 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense_numpy.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_generic.py +511 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_unweighted.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_weighted.py +983 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +625 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +2542 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +2107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +966 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +404 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +296 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +374 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +564 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +406 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_asteroidal.py +23 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_boundary.py +154 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_bridges.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_broadcasting.py +109 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chains.py +136 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chordal.py +129 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_clique.py +300 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cluster.py +678 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_communicability.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_core.py +266 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_covering.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cuts.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cycles.py +984 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_d_separation.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dag.py +835 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_measures.py +831 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_regular.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominance.py +299 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominating.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_efficiency.py +58 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_euler.py +314 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graph_hashing.py +872 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graphical.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hierarchy.py +46 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hybrid.py +24 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_isolate.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_link_prediction.py +615 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_lowest_common_ancestors.py +459 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_matching.py +556 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_max_weight_clique.py +179 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_mis.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_moral.py +15 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_node_classification.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_non_randomness.py +60 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_perfect_graph.py +27 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planar_drawing.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planarity.py +556 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_polynomials.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_reciprocity.py +37 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_regular.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_richclub.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_similarity.py +1158 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_simple_paths.py +803 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smallworld.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smetric.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_sparsifiers.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_structuralholes.py +191 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_summarization.py +642 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_swap.py +179 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_threshold.py +270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_time_dependent.py +431 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_tournament.py +161 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_triads.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_vitality.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_voronoi.py +103 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_walks.py +54 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_wiener.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +981 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +406 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +90 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +576 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +529 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +185 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgedfs.py +182 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_beamsearch.py +25 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_bfs.py +203 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_dfs.py +307 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgebfs.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgedfs.py +131 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/branchings.py +1042 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/coding.py +413 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/decomposition.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/distance_measures.py +219 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/mst.py +1281 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/operations.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/recognition.py +273 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_branchings.py +624 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_coding.py +114 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_decomposition.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_distance_measures.py +99 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_mst.py +934 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_operations.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_recognition.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/triads.py +500 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/vitality.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/voronoi.py +86 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/walks.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/wiener.py +278 -0
- package/runtime/python/okstra_vendor/networkx/classes/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/classes/coreviews.py +435 -0
- package/runtime/python/okstra_vendor/networkx/classes/digraph.py +1363 -0
- package/runtime/python/okstra_vendor/networkx/classes/filters.py +95 -0
- package/runtime/python/okstra_vendor/networkx/classes/function.py +1549 -0
- package/runtime/python/okstra_vendor/networkx/classes/graph.py +2082 -0
- package/runtime/python/okstra_vendor/networkx/classes/graphviews.py +269 -0
- package/runtime/python/okstra_vendor/networkx/classes/multidigraph.py +977 -0
- package/runtime/python/okstra_vendor/networkx/classes/multigraph.py +1294 -0
- package/runtime/python/okstra_vendor/networkx/classes/reportviews.py +1447 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/dispatch_interface.py +192 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/historical_tests.py +476 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_coreviews.py +362 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph.py +331 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph_historical.py +110 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_filters.py +177 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_function.py +1045 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph.py +950 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph_historical.py +12 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graphviews.py +349 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multidigraph.py +459 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multigraph.py +528 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_reportviews.py +1421 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_special.py +131 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_subgraphviews.py +371 -0
- package/runtime/python/okstra_vendor/networkx/conftest.py +261 -0
- package/runtime/python/okstra_vendor/networkx/convert.py +502 -0
- package/runtime/python/okstra_vendor/networkx/convert_matrix.py +1314 -0
- package/runtime/python/okstra_vendor/networkx/drawing/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/drawing/layout.py +2036 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_agraph.py +470 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_latex.py +570 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_pydot.py +361 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_pylab.py +2978 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_complex.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_empty_graph.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_labels_and_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_shortest_path.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_agraph.py +237 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_image_comparison_pylab_mpl.py +229 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_latex.py +285 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_layout.py +631 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pydot.py +146 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pylab.py +1582 -0
- package/runtime/python/okstra_vendor/networkx/exception.py +131 -0
- package/runtime/python/okstra_vendor/networkx/generators/__init__.py +34 -0
- package/runtime/python/okstra_vendor/networkx/generators/atlas.dat.gz +0 -0
- package/runtime/python/okstra_vendor/networkx/generators/atlas.py +227 -0
- package/runtime/python/okstra_vendor/networkx/generators/classic.py +1091 -0
- package/runtime/python/okstra_vendor/networkx/generators/cographs.py +68 -0
- package/runtime/python/okstra_vendor/networkx/generators/community.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/degree_seq.py +886 -0
- package/runtime/python/okstra_vendor/networkx/generators/directed.py +572 -0
- package/runtime/python/okstra_vendor/networkx/generators/duplication.py +174 -0
- package/runtime/python/okstra_vendor/networkx/generators/ego.py +66 -0
- package/runtime/python/okstra_vendor/networkx/generators/expanders.py +499 -0
- package/runtime/python/okstra_vendor/networkx/generators/geometric.py +1037 -0
- package/runtime/python/okstra_vendor/networkx/generators/harary_graph.py +163 -0
- package/runtime/python/okstra_vendor/networkx/generators/internet_as_graphs.py +443 -0
- package/runtime/python/okstra_vendor/networkx/generators/intersection.py +125 -0
- package/runtime/python/okstra_vendor/networkx/generators/interval_graph.py +70 -0
- package/runtime/python/okstra_vendor/networkx/generators/joint_degree_seq.py +664 -0
- package/runtime/python/okstra_vendor/networkx/generators/lattice.py +405 -0
- package/runtime/python/okstra_vendor/networkx/generators/line.py +501 -0
- package/runtime/python/okstra_vendor/networkx/generators/mycielski.py +110 -0
- package/runtime/python/okstra_vendor/networkx/generators/nonisomorphic_trees.py +259 -0
- package/runtime/python/okstra_vendor/networkx/generators/random_clustered.py +117 -0
- package/runtime/python/okstra_vendor/networkx/generators/random_graphs.py +1416 -0
- package/runtime/python/okstra_vendor/networkx/generators/small.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/social.py +554 -0
- package/runtime/python/okstra_vendor/networkx/generators/spectral_graph_forge.py +120 -0
- package/runtime/python/okstra_vendor/networkx/generators/stochastic.py +54 -0
- package/runtime/python/okstra_vendor/networkx/generators/sudoku.py +131 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_atlas.py +75 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_classic.py +642 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_cographs.py +20 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_community.py +362 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_degree_seq.py +224 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_directed.py +189 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_duplication.py +103 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_ego.py +39 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_expanders.py +182 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_geometric.py +488 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_harary_graph.py +133 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_internet_as_graphs.py +221 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_intersection.py +28 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_interval_graph.py +144 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_joint_degree_seq.py +125 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_lattice.py +264 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_line.py +316 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_mycielski.py +30 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_nonisomorphic_trees.py +82 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_clustered.py +33 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_graphs.py +495 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_small.py +220 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_spectral_graph_forge.py +49 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_stochastic.py +72 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_sudoku.py +92 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_time_series.py +64 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_trees.py +195 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_triads.py +15 -0
- package/runtime/python/okstra_vendor/networkx/generators/time_series.py +74 -0
- package/runtime/python/okstra_vendor/networkx/generators/trees.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/triads.py +94 -0
- package/runtime/python/okstra_vendor/networkx/lazy_imports.py +188 -0
- package/runtime/python/okstra_vendor/networkx/linalg/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/linalg/algebraicconnectivity.py +650 -0
- package/runtime/python/okstra_vendor/networkx/linalg/attrmatrix.py +466 -0
- package/runtime/python/okstra_vendor/networkx/linalg/bethehessianmatrix.py +77 -0
- package/runtime/python/okstra_vendor/networkx/linalg/graphmatrix.py +168 -0
- package/runtime/python/okstra_vendor/networkx/linalg/laplacianmatrix.py +512 -0
- package/runtime/python/okstra_vendor/networkx/linalg/modularitymatrix.py +166 -0
- package/runtime/python/okstra_vendor/networkx/linalg/spectrum.py +186 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py +400 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py +108 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py +40 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_graphmatrix.py +275 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_laplacian.py +334 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_modularity.py +86 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_spectrum.py +70 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/__init__.py +17 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/adjlist.py +330 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py +489 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gexf.py +1084 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gml.py +879 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graph6.py +427 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graphml.py +1053 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/__init__.py +19 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/adjacency.py +156 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/cytoscape.py +190 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/node_link.py +261 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_adjacency.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_cytoscape.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_node_link.py +109 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_tree.py +48 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tree.py +137 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/leda.py +108 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/multiline_adjlist.py +393 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/p2g.py +113 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/pajek.py +286 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/sparse6.py +379 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_adjlist.py +354 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_edgelist.py +318 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gexf.py +612 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gml.py +744 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graph6.py +181 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graphml.py +1531 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_leda.py +30 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_p2g.py +63 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_pajek.py +128 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_sparse6.py +166 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_text.py +1742 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/text.py +851 -0
- package/runtime/python/okstra_vendor/networkx/relabel.py +285 -0
- package/runtime/python/okstra_vendor/networkx/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_all_random_functions.py +248 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert.py +321 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_numpy.py +531 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_pandas.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_scipy.py +281 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_exceptions.py +40 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_import.py +11 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_lazy_imports.py +96 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_relabel.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_removed_functions_exception_messages.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/__init__.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/backends.py +2171 -0
- package/runtime/python/okstra_vendor/networkx/utils/configs.py +396 -0
- package/runtime/python/okstra_vendor/networkx/utils/decorators.py +1233 -0
- package/runtime/python/okstra_vendor/networkx/utils/heaps.py +338 -0
- package/runtime/python/okstra_vendor/networkx/utils/mapped_queue.py +297 -0
- package/runtime/python/okstra_vendor/networkx/utils/misc.py +703 -0
- package/runtime/python/okstra_vendor/networkx/utils/random_sequence.py +198 -0
- package/runtime/python/okstra_vendor/networkx/utils/rcm.py +159 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test__init.py +11 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_backends.py +225 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_config.py +263 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_decorators.py +510 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_heaps.py +131 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_mapped_queue.py +268 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_misc.py +393 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_random_sequence.py +53 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_rcm.py +63 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_unionfind.py +55 -0
- package/runtime/python/okstra_vendor/networkx/utils/union_find.py +106 -0
- package/runtime/skills/okstra-graphify/SKILL.md +161 -0
- package/runtime/skills/okstra-inspect/SKILL.md +17 -9
- package/runtime/templates/reports/settings.template.json +4 -0
- package/runtime/validators/forbidden_actions.py +8 -2
- package/runtime/validators/validate_session_conformance.py +26 -5
- package/src/cli-registry.mjs +7 -0
- package/src/commands/graphify.mjs +32 -0
- package/src/commands/lifecycle/doctor.mjs +9 -0
- package/src/lib/skill-catalog.mjs +1 -0
package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py
ADDED
|
@@ -0,0 +1,364 @@
|
|
|
1
|
+
"""Current-flow betweenness centrality measures."""
|
|
2
|
+
|
|
3
|
+
import networkx as nx
|
|
4
|
+
from networkx.algorithms.centrality.flow_matrix import (
|
|
5
|
+
CGInverseLaplacian,
|
|
6
|
+
FullInverseLaplacian,
|
|
7
|
+
SuperLUInverseLaplacian,
|
|
8
|
+
flow_matrix_row,
|
|
9
|
+
)
|
|
10
|
+
from networkx.utils import (
|
|
11
|
+
not_implemented_for,
|
|
12
|
+
py_random_state,
|
|
13
|
+
reverse_cuthill_mckee_ordering,
|
|
14
|
+
)
|
|
15
|
+
|
|
16
|
+
__all__ = [
|
|
17
|
+
"current_flow_betweenness_centrality",
|
|
18
|
+
"approximate_current_flow_betweenness_centrality",
|
|
19
|
+
"edge_current_flow_betweenness_centrality",
|
|
20
|
+
]
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
@not_implemented_for("directed")
|
|
24
|
+
@py_random_state("seed")
|
|
25
|
+
@nx._dispatchable(edge_attrs="weight")
|
|
26
|
+
def approximate_current_flow_betweenness_centrality(
|
|
27
|
+
G,
|
|
28
|
+
normalized=True,
|
|
29
|
+
weight=None,
|
|
30
|
+
dtype=float,
|
|
31
|
+
solver="full",
|
|
32
|
+
epsilon=0.5,
|
|
33
|
+
kmax=10000,
|
|
34
|
+
seed=None,
|
|
35
|
+
*,
|
|
36
|
+
sample_weight=1,
|
|
37
|
+
):
|
|
38
|
+
r"""Compute the approximate current-flow betweenness centrality for nodes.
|
|
39
|
+
|
|
40
|
+
Approximates the current-flow betweenness centrality within absolute
|
|
41
|
+
error of epsilon with high probability [1]_.
|
|
42
|
+
|
|
43
|
+
|
|
44
|
+
Parameters
|
|
45
|
+
----------
|
|
46
|
+
G : graph
|
|
47
|
+
A NetworkX graph
|
|
48
|
+
|
|
49
|
+
normalized : bool, optional (default=True)
|
|
50
|
+
If True the betweenness values are normalized by 2/[(n-1)(n-2)] where
|
|
51
|
+
n is the number of nodes in G.
|
|
52
|
+
|
|
53
|
+
weight : string or None, optional (default=None)
|
|
54
|
+
Key for edge data used as the edge weight.
|
|
55
|
+
If None, then use 1 as each edge weight.
|
|
56
|
+
The weight reflects the capacity or the strength of the
|
|
57
|
+
edge.
|
|
58
|
+
|
|
59
|
+
dtype : data type (float)
|
|
60
|
+
Default data type for internal matrices.
|
|
61
|
+
Set to np.float32 for lower memory consumption.
|
|
62
|
+
|
|
63
|
+
solver : string (default='full')
|
|
64
|
+
Type of linear solver to use for computing the flow matrix.
|
|
65
|
+
Options are "full" (uses most memory), "lu" (recommended), and
|
|
66
|
+
"cg" (uses least memory).
|
|
67
|
+
|
|
68
|
+
epsilon: float
|
|
69
|
+
Absolute error tolerance. Note that smaller values of `epsilon` lead to
|
|
70
|
+
higher numbers of sample pairs (``k``) and thus more computation time. The number
|
|
71
|
+
of sample pairs is approximately ``(c/epsilon)^2 * log(n)`` where ``n`` is the
|
|
72
|
+
number of nodes.
|
|
73
|
+
|
|
74
|
+
kmax: int
|
|
75
|
+
Maximum number of sample node pairs to use for approximation.
|
|
76
|
+
|
|
77
|
+
sample_weight : float (default=1)
|
|
78
|
+
Multiplicative factor for the number of sample node pairs used in approximation.
|
|
79
|
+
Higher values may improve accuracy at the expense of increased computation time.
|
|
80
|
+
|
|
81
|
+
seed : integer, random_state, or None (default)
|
|
82
|
+
Indicator of random number generation state.
|
|
83
|
+
See :ref:`Randomness<randomness>`.
|
|
84
|
+
|
|
85
|
+
Returns
|
|
86
|
+
-------
|
|
87
|
+
nodes : dictionary
|
|
88
|
+
Dictionary of nodes with betweenness centrality as the value.
|
|
89
|
+
|
|
90
|
+
See Also
|
|
91
|
+
--------
|
|
92
|
+
current_flow_betweenness_centrality
|
|
93
|
+
|
|
94
|
+
Notes
|
|
95
|
+
-----
|
|
96
|
+
The running time is $O((1/\epsilon^2)m{\sqrt k} \log n)$
|
|
97
|
+
and the space required is $O(m)$ for $n$ nodes and $m$ edges.
|
|
98
|
+
|
|
99
|
+
If the edges have a 'weight' attribute they will be used as
|
|
100
|
+
weights in this algorithm. Unspecified weights are set to 1.
|
|
101
|
+
|
|
102
|
+
References
|
|
103
|
+
----------
|
|
104
|
+
.. [1] Ulrik Brandes and Daniel Fleischer:
|
|
105
|
+
Centrality Measures Based on Current Flow.
|
|
106
|
+
Proc. 22nd Symp. Theoretical Aspects of Computer Science (STACS '05).
|
|
107
|
+
LNCS 3404, pp. 533-544. Springer-Verlag, 2005.
|
|
108
|
+
https://doi.org/10.1007/978-3-540-31856-9_44
|
|
109
|
+
"""
|
|
110
|
+
import numpy as np
|
|
111
|
+
|
|
112
|
+
if not nx.is_connected(G):
|
|
113
|
+
raise nx.NetworkXError("Graph not connected.")
|
|
114
|
+
|
|
115
|
+
n = G.number_of_nodes()
|
|
116
|
+
|
|
117
|
+
# For small graphs (n < 3), betweenness centrality is always 0 for all nodes
|
|
118
|
+
# since no node can be "between" any pair of other nodes
|
|
119
|
+
if n < 3:
|
|
120
|
+
return dict.fromkeys(G, 0.0)
|
|
121
|
+
|
|
122
|
+
if epsilon <= 0:
|
|
123
|
+
raise nx.NetworkXError(f"Epsilon must be positive. Got {epsilon=}.")
|
|
124
|
+
|
|
125
|
+
if sample_weight <= 0:
|
|
126
|
+
raise nx.NetworkXError(f"Sample weight must be positive. Got {sample_weight=}.")
|
|
127
|
+
|
|
128
|
+
nb = (n - 1.0) * (n - 2.0) # normalization factor
|
|
129
|
+
cstar = n * (n - 1) / nb
|
|
130
|
+
k = int(sample_weight * np.ceil((cstar / epsilon) ** 2 * np.log(n)))
|
|
131
|
+
if k > kmax:
|
|
132
|
+
msg = f"Number random pairs k>kmax ({k}>{kmax}) "
|
|
133
|
+
raise nx.NetworkXError(msg, "Increase kmax or epsilon")
|
|
134
|
+
|
|
135
|
+
solvername = {
|
|
136
|
+
"full": FullInverseLaplacian,
|
|
137
|
+
"lu": SuperLUInverseLaplacian,
|
|
138
|
+
"cg": CGInverseLaplacian,
|
|
139
|
+
}
|
|
140
|
+
ordering = list(reverse_cuthill_mckee_ordering(G))
|
|
141
|
+
# make a copy with integer labels according to rcm ordering
|
|
142
|
+
# this could be done without a copy if we really wanted to
|
|
143
|
+
H = nx.relabel_nodes(G, dict(zip(ordering, range(n))))
|
|
144
|
+
L = nx.laplacian_matrix(H, nodelist=range(n), weight=weight).asformat("csc")
|
|
145
|
+
L = L.astype(dtype)
|
|
146
|
+
C = solvername[solver](L, dtype=dtype) # initialize solver
|
|
147
|
+
betweenness = dict.fromkeys(H, 0.0)
|
|
148
|
+
cstar2k = cstar / (2 * k)
|
|
149
|
+
for _ in range(k):
|
|
150
|
+
s, t = pair = seed.sample(range(n), 2)
|
|
151
|
+
b = np.zeros(n, dtype=dtype)
|
|
152
|
+
b[s] = 1
|
|
153
|
+
b[t] = -1
|
|
154
|
+
p = C.solve(b)
|
|
155
|
+
for v in H:
|
|
156
|
+
if v in pair:
|
|
157
|
+
continue
|
|
158
|
+
for nbr in H[v]:
|
|
159
|
+
w = H[v][nbr].get(weight, 1.0)
|
|
160
|
+
betweenness[v] += float(w * np.abs(p[v] - p[nbr]) * cstar2k)
|
|
161
|
+
if normalized:
|
|
162
|
+
factor = 1.0
|
|
163
|
+
else:
|
|
164
|
+
factor = nb / 2.0
|
|
165
|
+
# remap to original node names and "unnormalize" if required
|
|
166
|
+
return {ordering[k]: v * factor for k, v in betweenness.items()}
|
|
167
|
+
|
|
168
|
+
|
|
169
|
+
@not_implemented_for("directed")
|
|
170
|
+
@nx._dispatchable(edge_attrs="weight")
|
|
171
|
+
def current_flow_betweenness_centrality(
|
|
172
|
+
G, normalized=True, weight=None, dtype=float, solver="full"
|
|
173
|
+
):
|
|
174
|
+
r"""Compute current-flow betweenness centrality for nodes.
|
|
175
|
+
|
|
176
|
+
Current-flow betweenness centrality uses an electrical current
|
|
177
|
+
model for information spreading in contrast to betweenness
|
|
178
|
+
centrality which uses shortest paths.
|
|
179
|
+
|
|
180
|
+
Current-flow betweenness centrality is also known as
|
|
181
|
+
random-walk betweenness centrality [2]_.
|
|
182
|
+
|
|
183
|
+
Parameters
|
|
184
|
+
----------
|
|
185
|
+
G : graph
|
|
186
|
+
A NetworkX graph
|
|
187
|
+
|
|
188
|
+
normalized : bool, optional (default=True)
|
|
189
|
+
If True the betweenness values are normalized by 2/[(n-1)(n-2)] where
|
|
190
|
+
n is the number of nodes in G.
|
|
191
|
+
|
|
192
|
+
weight : string or None, optional (default=None)
|
|
193
|
+
Key for edge data used as the edge weight.
|
|
194
|
+
If None, then use 1 as each edge weight.
|
|
195
|
+
The weight reflects the capacity or the strength of the
|
|
196
|
+
edge.
|
|
197
|
+
|
|
198
|
+
dtype : data type (float)
|
|
199
|
+
Default data type for internal matrices.
|
|
200
|
+
Set to np.float32 for lower memory consumption.
|
|
201
|
+
|
|
202
|
+
solver : string (default='full')
|
|
203
|
+
Type of linear solver to use for computing the flow matrix.
|
|
204
|
+
Options are "full" (uses most memory), "lu" (recommended), and
|
|
205
|
+
"cg" (uses least memory).
|
|
206
|
+
|
|
207
|
+
Returns
|
|
208
|
+
-------
|
|
209
|
+
nodes : dictionary
|
|
210
|
+
Dictionary of nodes with betweenness centrality as the value.
|
|
211
|
+
|
|
212
|
+
See Also
|
|
213
|
+
--------
|
|
214
|
+
approximate_current_flow_betweenness_centrality
|
|
215
|
+
betweenness_centrality
|
|
216
|
+
edge_betweenness_centrality
|
|
217
|
+
edge_current_flow_betweenness_centrality
|
|
218
|
+
|
|
219
|
+
Notes
|
|
220
|
+
-----
|
|
221
|
+
Current-flow betweenness can be computed in $O(I(n-1)+mn \log n)$
|
|
222
|
+
time [1]_, where $I(n-1)$ is the time needed to compute the
|
|
223
|
+
inverse Laplacian. For a full matrix this is $O(n^3)$ but using
|
|
224
|
+
sparse methods you can achieve $O(nm{\sqrt k})$ where $k$ is the
|
|
225
|
+
Laplacian matrix condition number.
|
|
226
|
+
|
|
227
|
+
The space required is $O(nw)$ where $w$ is the width of the sparse
|
|
228
|
+
Laplacian matrix. Worse case is $w=n$ for $O(n^2)$.
|
|
229
|
+
|
|
230
|
+
If the edges have a 'weight' attribute they will be used as
|
|
231
|
+
weights in this algorithm. Unspecified weights are set to 1.
|
|
232
|
+
|
|
233
|
+
References
|
|
234
|
+
----------
|
|
235
|
+
.. [1] Centrality Measures Based on Current Flow.
|
|
236
|
+
Ulrik Brandes and Daniel Fleischer,
|
|
237
|
+
Proc. 22nd Symp. Theoretical Aspects of Computer Science (STACS '05).
|
|
238
|
+
LNCS 3404, pp. 533-544. Springer-Verlag, 2005.
|
|
239
|
+
https://doi.org/10.1007/978-3-540-31856-9_44
|
|
240
|
+
|
|
241
|
+
.. [2] A measure of betweenness centrality based on random walks,
|
|
242
|
+
M. E. J. Newman, Social Networks 27, 39-54 (2005).
|
|
243
|
+
"""
|
|
244
|
+
if not nx.is_connected(G):
|
|
245
|
+
raise nx.NetworkXError("Graph not connected.")
|
|
246
|
+
N = G.number_of_nodes()
|
|
247
|
+
ordering = list(reverse_cuthill_mckee_ordering(G))
|
|
248
|
+
# make a copy with integer labels according to rcm ordering
|
|
249
|
+
# this could be done without a copy if we really wanted to
|
|
250
|
+
H = nx.relabel_nodes(G, dict(zip(ordering, range(N))))
|
|
251
|
+
betweenness = dict.fromkeys(H, 0.0) # b[n]=0 for n in H
|
|
252
|
+
for row, (s, t) in flow_matrix_row(H, weight=weight, dtype=dtype, solver=solver):
|
|
253
|
+
pos = dict(zip(row.argsort()[::-1], range(N)))
|
|
254
|
+
for i in range(N):
|
|
255
|
+
betweenness[s] += (i - pos[i]) * row.item(i)
|
|
256
|
+
betweenness[t] += (N - i - 1 - pos[i]) * row.item(i)
|
|
257
|
+
if normalized:
|
|
258
|
+
nb = (N - 1.0) * (N - 2.0) # normalization factor
|
|
259
|
+
else:
|
|
260
|
+
nb = 2.0
|
|
261
|
+
return {ordering[n]: (b - n) * 2.0 / nb for n, b in betweenness.items()}
|
|
262
|
+
|
|
263
|
+
|
|
264
|
+
@not_implemented_for("directed")
|
|
265
|
+
@nx._dispatchable(edge_attrs="weight")
|
|
266
|
+
def edge_current_flow_betweenness_centrality(
|
|
267
|
+
G, normalized=True, weight=None, dtype=float, solver="full"
|
|
268
|
+
):
|
|
269
|
+
r"""Compute current-flow betweenness centrality for edges.
|
|
270
|
+
|
|
271
|
+
Current-flow betweenness centrality uses an electrical current
|
|
272
|
+
model for information spreading in contrast to betweenness
|
|
273
|
+
centrality which uses shortest paths.
|
|
274
|
+
|
|
275
|
+
Current-flow betweenness centrality is also known as
|
|
276
|
+
random-walk betweenness centrality [2]_.
|
|
277
|
+
|
|
278
|
+
Parameters
|
|
279
|
+
----------
|
|
280
|
+
G : graph
|
|
281
|
+
A NetworkX graph
|
|
282
|
+
|
|
283
|
+
normalized : bool, optional (default=True)
|
|
284
|
+
If True the betweenness values are normalized by 2/[(n-1)(n-2)] where
|
|
285
|
+
n is the number of nodes in G.
|
|
286
|
+
|
|
287
|
+
weight : string or None, optional (default=None)
|
|
288
|
+
Key for edge data used as the edge weight.
|
|
289
|
+
If None, then use 1 as each edge weight.
|
|
290
|
+
The weight reflects the capacity or the strength of the
|
|
291
|
+
edge.
|
|
292
|
+
|
|
293
|
+
dtype : data type (default=float)
|
|
294
|
+
Default data type for internal matrices.
|
|
295
|
+
Set to np.float32 for lower memory consumption.
|
|
296
|
+
|
|
297
|
+
solver : string (default='full')
|
|
298
|
+
Type of linear solver to use for computing the flow matrix.
|
|
299
|
+
Options are "full" (uses most memory), "lu" (recommended), and
|
|
300
|
+
"cg" (uses least memory).
|
|
301
|
+
|
|
302
|
+
Returns
|
|
303
|
+
-------
|
|
304
|
+
nodes : dictionary
|
|
305
|
+
Dictionary of edge tuples with betweenness centrality as the value.
|
|
306
|
+
|
|
307
|
+
Raises
|
|
308
|
+
------
|
|
309
|
+
NetworkXError
|
|
310
|
+
The algorithm does not support DiGraphs.
|
|
311
|
+
If the input graph is an instance of DiGraph class, NetworkXError
|
|
312
|
+
is raised.
|
|
313
|
+
|
|
314
|
+
See Also
|
|
315
|
+
--------
|
|
316
|
+
betweenness_centrality
|
|
317
|
+
edge_betweenness_centrality
|
|
318
|
+
current_flow_betweenness_centrality
|
|
319
|
+
|
|
320
|
+
Notes
|
|
321
|
+
-----
|
|
322
|
+
Current-flow betweenness can be computed in $O(I(n-1)+mn \log n)$
|
|
323
|
+
time [1]_, where $I(n-1)$ is the time needed to compute the
|
|
324
|
+
inverse Laplacian. For a full matrix this is $O(n^3)$ but using
|
|
325
|
+
sparse methods you can achieve $O(nm{\sqrt k})$ where $k$ is the
|
|
326
|
+
Laplacian matrix condition number.
|
|
327
|
+
|
|
328
|
+
The space required is $O(nw)$ where $w$ is the width of the sparse
|
|
329
|
+
Laplacian matrix. Worse case is $w=n$ for $O(n^2)$.
|
|
330
|
+
|
|
331
|
+
If the edges have a 'weight' attribute they will be used as
|
|
332
|
+
weights in this algorithm. Unspecified weights are set to 1.
|
|
333
|
+
|
|
334
|
+
References
|
|
335
|
+
----------
|
|
336
|
+
.. [1] Centrality Measures Based on Current Flow.
|
|
337
|
+
Ulrik Brandes and Daniel Fleischer,
|
|
338
|
+
Proc. 22nd Symp. Theoretical Aspects of Computer Science (STACS '05).
|
|
339
|
+
LNCS 3404, pp. 533-544. Springer-Verlag, 2005.
|
|
340
|
+
https://doi.org/10.1007/978-3-540-31856-9_44
|
|
341
|
+
|
|
342
|
+
.. [2] A measure of betweenness centrality based on random walks,
|
|
343
|
+
M. E. J. Newman, Social Networks 27, 39-54 (2005).
|
|
344
|
+
"""
|
|
345
|
+
if not nx.is_connected(G):
|
|
346
|
+
raise nx.NetworkXError("Graph not connected.")
|
|
347
|
+
N = G.number_of_nodes()
|
|
348
|
+
ordering = list(reverse_cuthill_mckee_ordering(G))
|
|
349
|
+
# make a copy with integer labels according to rcm ordering
|
|
350
|
+
# this could be done without a copy if we really wanted to
|
|
351
|
+
H = nx.relabel_nodes(G, dict(zip(ordering, range(N))))
|
|
352
|
+
edges = (tuple(sorted((u, v))) for u, v in H.edges())
|
|
353
|
+
betweenness = dict.fromkeys(edges, 0.0)
|
|
354
|
+
if normalized:
|
|
355
|
+
nb = (N - 1.0) * (N - 2.0) # normalization factor
|
|
356
|
+
else:
|
|
357
|
+
nb = 2.0
|
|
358
|
+
for row, (e) in flow_matrix_row(H, weight=weight, dtype=dtype, solver=solver):
|
|
359
|
+
pos = dict(zip(row.argsort()[::-1], range(1, N + 1)))
|
|
360
|
+
for i in range(N):
|
|
361
|
+
betweenness[e] += (i + 1 - pos[i]) * row.item(i)
|
|
362
|
+
betweenness[e] += (N - i - pos[i]) * row.item(i)
|
|
363
|
+
betweenness[e] /= nb
|
|
364
|
+
return {(ordering[s], ordering[t]): b for (s, t), b in betweenness.items()}
|
|
@@ -0,0 +1,227 @@
|
|
|
1
|
+
"""Current-flow betweenness centrality measures for subsets of nodes."""
|
|
2
|
+
|
|
3
|
+
import networkx as nx
|
|
4
|
+
from networkx.algorithms.centrality.flow_matrix import flow_matrix_row
|
|
5
|
+
from networkx.utils import not_implemented_for, reverse_cuthill_mckee_ordering
|
|
6
|
+
|
|
7
|
+
__all__ = [
|
|
8
|
+
"current_flow_betweenness_centrality_subset",
|
|
9
|
+
"edge_current_flow_betweenness_centrality_subset",
|
|
10
|
+
]
|
|
11
|
+
|
|
12
|
+
|
|
13
|
+
@not_implemented_for("directed")
|
|
14
|
+
@nx._dispatchable(edge_attrs="weight")
|
|
15
|
+
def current_flow_betweenness_centrality_subset(
|
|
16
|
+
G, sources, targets, normalized=True, weight=None, dtype=float, solver="lu"
|
|
17
|
+
):
|
|
18
|
+
r"""Compute current-flow betweenness centrality for subsets of nodes.
|
|
19
|
+
|
|
20
|
+
Current-flow betweenness centrality uses an electrical current
|
|
21
|
+
model for information spreading in contrast to betweenness
|
|
22
|
+
centrality which uses shortest paths.
|
|
23
|
+
|
|
24
|
+
Current-flow betweenness centrality is also known as
|
|
25
|
+
random-walk betweenness centrality [2]_.
|
|
26
|
+
|
|
27
|
+
Parameters
|
|
28
|
+
----------
|
|
29
|
+
G : graph
|
|
30
|
+
A NetworkX graph
|
|
31
|
+
|
|
32
|
+
sources: list of nodes
|
|
33
|
+
Nodes to use as sources for current
|
|
34
|
+
|
|
35
|
+
targets: list of nodes
|
|
36
|
+
Nodes to use as sinks for current
|
|
37
|
+
|
|
38
|
+
normalized : bool, optional (default=True)
|
|
39
|
+
If True the betweenness values are normalized by b=b/(n-1)(n-2) where
|
|
40
|
+
n is the number of nodes in G.
|
|
41
|
+
|
|
42
|
+
weight : string or None, optional (default=None)
|
|
43
|
+
Key for edge data used as the edge weight.
|
|
44
|
+
If None, then use 1 as each edge weight.
|
|
45
|
+
The weight reflects the capacity or the strength of the
|
|
46
|
+
edge.
|
|
47
|
+
|
|
48
|
+
dtype: data type (float)
|
|
49
|
+
Default data type for internal matrices.
|
|
50
|
+
Set to np.float32 for lower memory consumption.
|
|
51
|
+
|
|
52
|
+
solver: string (default='lu')
|
|
53
|
+
Type of linear solver to use for computing the flow matrix.
|
|
54
|
+
Options are "full" (uses most memory), "lu" (recommended), and
|
|
55
|
+
"cg" (uses least memory).
|
|
56
|
+
|
|
57
|
+
Returns
|
|
58
|
+
-------
|
|
59
|
+
nodes : dictionary
|
|
60
|
+
Dictionary of nodes with betweenness centrality as the value.
|
|
61
|
+
|
|
62
|
+
See Also
|
|
63
|
+
--------
|
|
64
|
+
approximate_current_flow_betweenness_centrality
|
|
65
|
+
betweenness_centrality
|
|
66
|
+
edge_betweenness_centrality
|
|
67
|
+
edge_current_flow_betweenness_centrality
|
|
68
|
+
|
|
69
|
+
Notes
|
|
70
|
+
-----
|
|
71
|
+
Current-flow betweenness can be computed in $O(I(n-1)+mn \log n)$
|
|
72
|
+
time [1]_, where $I(n-1)$ is the time needed to compute the
|
|
73
|
+
inverse Laplacian. For a full matrix this is $O(n^3)$ but using
|
|
74
|
+
sparse methods you can achieve $O(nm{\sqrt k})$ where $k$ is the
|
|
75
|
+
Laplacian matrix condition number.
|
|
76
|
+
|
|
77
|
+
The space required is $O(nw)$ where $w$ is the width of the sparse
|
|
78
|
+
Laplacian matrix. Worse case is $w=n$ for $O(n^2)$.
|
|
79
|
+
|
|
80
|
+
If the edges have a 'weight' attribute they will be used as
|
|
81
|
+
weights in this algorithm. Unspecified weights are set to 1.
|
|
82
|
+
|
|
83
|
+
References
|
|
84
|
+
----------
|
|
85
|
+
.. [1] Centrality Measures Based on Current Flow.
|
|
86
|
+
Ulrik Brandes and Daniel Fleischer,
|
|
87
|
+
Proc. 22nd Symp. Theoretical Aspects of Computer Science (STACS '05).
|
|
88
|
+
LNCS 3404, pp. 533-544. Springer-Verlag, 2005.
|
|
89
|
+
https://doi.org/10.1007/978-3-540-31856-9_44
|
|
90
|
+
|
|
91
|
+
.. [2] A measure of betweenness centrality based on random walks,
|
|
92
|
+
M. E. J. Newman, Social Networks 27, 39-54 (2005).
|
|
93
|
+
"""
|
|
94
|
+
import numpy as np
|
|
95
|
+
|
|
96
|
+
from networkx.utils import reverse_cuthill_mckee_ordering
|
|
97
|
+
|
|
98
|
+
if not nx.is_connected(G):
|
|
99
|
+
raise nx.NetworkXError("Graph not connected.")
|
|
100
|
+
N = G.number_of_nodes()
|
|
101
|
+
ordering = list(reverse_cuthill_mckee_ordering(G))
|
|
102
|
+
# make a copy with integer labels according to rcm ordering
|
|
103
|
+
# this could be done without a copy if we really wanted to
|
|
104
|
+
mapping = dict(zip(ordering, range(N)))
|
|
105
|
+
H = nx.relabel_nodes(G, mapping)
|
|
106
|
+
betweenness = dict.fromkeys(H, 0.0) # b[n]=0 for n in H
|
|
107
|
+
for row, (s, t) in flow_matrix_row(H, weight=weight, dtype=dtype, solver=solver):
|
|
108
|
+
for ss in sources:
|
|
109
|
+
i = mapping[ss]
|
|
110
|
+
for tt in targets:
|
|
111
|
+
j = mapping[tt]
|
|
112
|
+
betweenness[s] += 0.5 * abs(row.item(i) - row.item(j))
|
|
113
|
+
betweenness[t] += 0.5 * abs(row.item(i) - row.item(j))
|
|
114
|
+
if normalized:
|
|
115
|
+
nb = (N - 1.0) * (N - 2.0) # normalization factor
|
|
116
|
+
else:
|
|
117
|
+
nb = 2.0
|
|
118
|
+
for node in H:
|
|
119
|
+
betweenness[node] = betweenness[node] / nb + 1.0 / (2 - N)
|
|
120
|
+
return {ordering[node]: value for node, value in betweenness.items()}
|
|
121
|
+
|
|
122
|
+
|
|
123
|
+
@not_implemented_for("directed")
|
|
124
|
+
@nx._dispatchable(edge_attrs="weight")
|
|
125
|
+
def edge_current_flow_betweenness_centrality_subset(
|
|
126
|
+
G, sources, targets, normalized=True, weight=None, dtype=float, solver="lu"
|
|
127
|
+
):
|
|
128
|
+
r"""Compute current-flow betweenness centrality for edges using subsets
|
|
129
|
+
of nodes.
|
|
130
|
+
|
|
131
|
+
Current-flow betweenness centrality uses an electrical current
|
|
132
|
+
model for information spreading in contrast to betweenness
|
|
133
|
+
centrality which uses shortest paths.
|
|
134
|
+
|
|
135
|
+
Current-flow betweenness centrality is also known as
|
|
136
|
+
random-walk betweenness centrality [2]_.
|
|
137
|
+
|
|
138
|
+
Parameters
|
|
139
|
+
----------
|
|
140
|
+
G : graph
|
|
141
|
+
A NetworkX graph
|
|
142
|
+
|
|
143
|
+
sources: list of nodes
|
|
144
|
+
Nodes to use as sources for current
|
|
145
|
+
|
|
146
|
+
targets: list of nodes
|
|
147
|
+
Nodes to use as sinks for current
|
|
148
|
+
|
|
149
|
+
normalized : bool, optional (default=True)
|
|
150
|
+
If True the betweenness values are normalized by b=b/(n-1)(n-2) where
|
|
151
|
+
n is the number of nodes in G.
|
|
152
|
+
|
|
153
|
+
weight : string or None, optional (default=None)
|
|
154
|
+
Key for edge data used as the edge weight.
|
|
155
|
+
If None, then use 1 as each edge weight.
|
|
156
|
+
The weight reflects the capacity or the strength of the
|
|
157
|
+
edge.
|
|
158
|
+
|
|
159
|
+
dtype: data type (float)
|
|
160
|
+
Default data type for internal matrices.
|
|
161
|
+
Set to np.float32 for lower memory consumption.
|
|
162
|
+
|
|
163
|
+
solver: string (default='lu')
|
|
164
|
+
Type of linear solver to use for computing the flow matrix.
|
|
165
|
+
Options are "full" (uses most memory), "lu" (recommended), and
|
|
166
|
+
"cg" (uses least memory).
|
|
167
|
+
|
|
168
|
+
Returns
|
|
169
|
+
-------
|
|
170
|
+
nodes : dict
|
|
171
|
+
Dictionary of edge tuples with betweenness centrality as the value.
|
|
172
|
+
|
|
173
|
+
See Also
|
|
174
|
+
--------
|
|
175
|
+
betweenness_centrality
|
|
176
|
+
edge_betweenness_centrality
|
|
177
|
+
current_flow_betweenness_centrality
|
|
178
|
+
|
|
179
|
+
Notes
|
|
180
|
+
-----
|
|
181
|
+
Current-flow betweenness can be computed in $O(I(n-1)+mn \log n)$
|
|
182
|
+
time [1]_, where $I(n-1)$ is the time needed to compute the
|
|
183
|
+
inverse Laplacian. For a full matrix this is $O(n^3)$ but using
|
|
184
|
+
sparse methods you can achieve $O(nm{\sqrt k})$ where $k$ is the
|
|
185
|
+
Laplacian matrix condition number.
|
|
186
|
+
|
|
187
|
+
The space required is $O(nw)$ where $w$ is the width of the sparse
|
|
188
|
+
Laplacian matrix. Worse case is $w=n$ for $O(n^2)$.
|
|
189
|
+
|
|
190
|
+
If the edges have a 'weight' attribute they will be used as
|
|
191
|
+
weights in this algorithm. Unspecified weights are set to 1.
|
|
192
|
+
|
|
193
|
+
References
|
|
194
|
+
----------
|
|
195
|
+
.. [1] Centrality Measures Based on Current Flow.
|
|
196
|
+
Ulrik Brandes and Daniel Fleischer,
|
|
197
|
+
Proc. 22nd Symp. Theoretical Aspects of Computer Science (STACS '05).
|
|
198
|
+
LNCS 3404, pp. 533-544. Springer-Verlag, 2005.
|
|
199
|
+
https://doi.org/10.1007/978-3-540-31856-9_44
|
|
200
|
+
|
|
201
|
+
.. [2] A measure of betweenness centrality based on random walks,
|
|
202
|
+
M. E. J. Newman, Social Networks 27, 39-54 (2005).
|
|
203
|
+
"""
|
|
204
|
+
import numpy as np
|
|
205
|
+
|
|
206
|
+
if not nx.is_connected(G):
|
|
207
|
+
raise nx.NetworkXError("Graph not connected.")
|
|
208
|
+
N = G.number_of_nodes()
|
|
209
|
+
ordering = list(reverse_cuthill_mckee_ordering(G))
|
|
210
|
+
# make a copy with integer labels according to rcm ordering
|
|
211
|
+
# this could be done without a copy if we really wanted to
|
|
212
|
+
mapping = dict(zip(ordering, range(N)))
|
|
213
|
+
H = nx.relabel_nodes(G, mapping)
|
|
214
|
+
edges = (tuple(sorted((u, v))) for u, v in H.edges())
|
|
215
|
+
betweenness = dict.fromkeys(edges, 0.0)
|
|
216
|
+
if normalized:
|
|
217
|
+
nb = (N - 1.0) * (N - 2.0) # normalization factor
|
|
218
|
+
else:
|
|
219
|
+
nb = 2.0
|
|
220
|
+
for row, (e) in flow_matrix_row(H, weight=weight, dtype=dtype, solver=solver):
|
|
221
|
+
for ss in sources:
|
|
222
|
+
i = mapping[ss]
|
|
223
|
+
for tt in targets:
|
|
224
|
+
j = mapping[tt]
|
|
225
|
+
betweenness[e] += 0.5 * abs(row.item(i) - row.item(j))
|
|
226
|
+
betweenness[e] /= nb
|
|
227
|
+
return {(ordering[s], ordering[t]): value for (s, t), value in betweenness.items()}
|
|
@@ -0,0 +1,96 @@
|
|
|
1
|
+
"""Current-flow closeness centrality measures."""
|
|
2
|
+
|
|
3
|
+
import networkx as nx
|
|
4
|
+
from networkx.algorithms.centrality.flow_matrix import (
|
|
5
|
+
CGInverseLaplacian,
|
|
6
|
+
FullInverseLaplacian,
|
|
7
|
+
SuperLUInverseLaplacian,
|
|
8
|
+
)
|
|
9
|
+
from networkx.utils import not_implemented_for, reverse_cuthill_mckee_ordering
|
|
10
|
+
|
|
11
|
+
__all__ = ["current_flow_closeness_centrality", "information_centrality"]
|
|
12
|
+
|
|
13
|
+
|
|
14
|
+
@not_implemented_for("directed")
|
|
15
|
+
@nx._dispatchable(edge_attrs="weight")
|
|
16
|
+
def current_flow_closeness_centrality(G, weight=None, dtype=float, solver="lu"):
|
|
17
|
+
"""Compute current-flow closeness centrality for nodes.
|
|
18
|
+
|
|
19
|
+
Current-flow closeness centrality is variant of closeness
|
|
20
|
+
centrality based on effective resistance between nodes in
|
|
21
|
+
a network. This metric is also known as information centrality.
|
|
22
|
+
|
|
23
|
+
Parameters
|
|
24
|
+
----------
|
|
25
|
+
G : graph
|
|
26
|
+
A NetworkX graph.
|
|
27
|
+
|
|
28
|
+
weight : None or string, optional (default=None)
|
|
29
|
+
If None, all edge weights are considered equal.
|
|
30
|
+
Otherwise holds the name of the edge attribute used as weight.
|
|
31
|
+
The weight reflects the capacity or the strength of the
|
|
32
|
+
edge.
|
|
33
|
+
|
|
34
|
+
dtype: data type (default=float)
|
|
35
|
+
Default data type for internal matrices.
|
|
36
|
+
Set to np.float32 for lower memory consumption.
|
|
37
|
+
|
|
38
|
+
solver: string (default='lu')
|
|
39
|
+
Type of linear solver to use for computing the flow matrix.
|
|
40
|
+
Options are "full" (uses most memory), "lu" (recommended), and
|
|
41
|
+
"cg" (uses least memory).
|
|
42
|
+
|
|
43
|
+
Returns
|
|
44
|
+
-------
|
|
45
|
+
nodes : dictionary
|
|
46
|
+
Dictionary of nodes with current flow closeness centrality as the value.
|
|
47
|
+
|
|
48
|
+
See Also
|
|
49
|
+
--------
|
|
50
|
+
closeness_centrality
|
|
51
|
+
|
|
52
|
+
Notes
|
|
53
|
+
-----
|
|
54
|
+
The algorithm is from Brandes [1]_.
|
|
55
|
+
|
|
56
|
+
See also [2]_ for the original definition of information centrality.
|
|
57
|
+
|
|
58
|
+
References
|
|
59
|
+
----------
|
|
60
|
+
.. [1] Ulrik Brandes and Daniel Fleischer,
|
|
61
|
+
Centrality Measures Based on Current Flow.
|
|
62
|
+
Proc. 22nd Symp. Theoretical Aspects of Computer Science (STACS '05).
|
|
63
|
+
LNCS 3404, pp. 533-544. Springer-Verlag, 2005.
|
|
64
|
+
https://doi.org/10.1007/978-3-540-31856-9_44
|
|
65
|
+
|
|
66
|
+
.. [2] Karen Stephenson and Marvin Zelen:
|
|
67
|
+
Rethinking centrality: Methods and examples.
|
|
68
|
+
Social Networks 11(1):1-37, 1989.
|
|
69
|
+
https://doi.org/10.1016/0378-8733(89)90016-6
|
|
70
|
+
"""
|
|
71
|
+
if not nx.is_connected(G):
|
|
72
|
+
raise nx.NetworkXError("Graph not connected.")
|
|
73
|
+
solvername = {
|
|
74
|
+
"full": FullInverseLaplacian,
|
|
75
|
+
"lu": SuperLUInverseLaplacian,
|
|
76
|
+
"cg": CGInverseLaplacian,
|
|
77
|
+
}
|
|
78
|
+
N = G.number_of_nodes()
|
|
79
|
+
ordering = list(reverse_cuthill_mckee_ordering(G))
|
|
80
|
+
# make a copy with integer labels according to rcm ordering
|
|
81
|
+
# this could be done without a copy if we really wanted to
|
|
82
|
+
H = nx.relabel_nodes(G, dict(zip(ordering, range(N))))
|
|
83
|
+
betweenness = dict.fromkeys(H, 0.0) # b[n]=0 for n in H
|
|
84
|
+
N = H.number_of_nodes()
|
|
85
|
+
L = nx.laplacian_matrix(H, nodelist=range(N), weight=weight).asformat("csc")
|
|
86
|
+
L = L.astype(dtype)
|
|
87
|
+
C2 = solvername[solver](L, width=1, dtype=dtype) # initialize solver
|
|
88
|
+
for v in H:
|
|
89
|
+
col = C2.get_row(v)
|
|
90
|
+
for w in H:
|
|
91
|
+
betweenness[v] += col.item(v) - 2 * col.item(w)
|
|
92
|
+
betweenness[w] += col.item(v)
|
|
93
|
+
return {ordering[node]: 1 / value for node, value in betweenness.items()}
|
|
94
|
+
|
|
95
|
+
|
|
96
|
+
information_centrality = current_flow_closeness_centrality
|