okstra 0.107.2 → 0.109.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (649) hide show
  1. package/package.json +1 -1
  2. package/runtime/BUILD.json +2 -2
  3. package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
  4. package/runtime/prompts/profiles/_common-contract.md +3 -2
  5. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  6. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  7. package/runtime/python/okstra_ctl/session.py +44 -0
  8. package/runtime/python/okstra_project/__init__.py +2 -0
  9. package/runtime/python/okstra_project/state.py +36 -0
  10. package/runtime/python/okstra_token_usage/claude.py +15 -9
  11. package/runtime/python/okstra_token_usage/cli.py +23 -0
  12. package/runtime/python/okstra_token_usage/collect.py +163 -4
  13. package/runtime/python/okstra_vendor/__init__.py +41 -0
  14. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  15. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  16. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  17. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  18. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  19. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  20. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  21. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  22. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  23. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  24. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  25. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  26. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  27. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  28. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  29. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  30. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  31. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  36. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  37. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  38. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  39. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  40. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  41. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  42. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  43. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  44. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  45. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  46. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  47. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
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@@ -0,0 +1,1281 @@
1
+ """
2
+ Algorithms for calculating min/max spanning trees/forests.
3
+
4
+ """
5
+
6
+ from dataclasses import dataclass, field
7
+ from enum import Enum
8
+ from heapq import heappop, heappush
9
+ from itertools import count
10
+ from math import isnan
11
+ from operator import itemgetter
12
+ from queue import PriorityQueue
13
+
14
+ import networkx as nx
15
+ from networkx.utils import UnionFind, not_implemented_for, py_random_state
16
+
17
+ __all__ = [
18
+ "minimum_spanning_edges",
19
+ "maximum_spanning_edges",
20
+ "minimum_spanning_tree",
21
+ "maximum_spanning_tree",
22
+ "number_of_spanning_trees",
23
+ "random_spanning_tree",
24
+ "partition_spanning_tree",
25
+ "EdgePartition",
26
+ "SpanningTreeIterator",
27
+ ]
28
+
29
+
30
+ class EdgePartition(Enum):
31
+ """
32
+ An enum to store the state of an edge partition. The enum is written to the
33
+ edges of a graph before being pasted to `kruskal_mst_edges`. Options are:
34
+
35
+ - EdgePartition.OPEN
36
+ - EdgePartition.INCLUDED
37
+ - EdgePartition.EXCLUDED
38
+ """
39
+
40
+ OPEN = 0
41
+ INCLUDED = 1
42
+ EXCLUDED = 2
43
+
44
+
45
+ @not_implemented_for("multigraph")
46
+ @nx._dispatchable(edge_attrs="weight", preserve_edge_attrs="data")
47
+ def boruvka_mst_edges(
48
+ G, minimum=True, weight="weight", keys=False, data=True, ignore_nan=False
49
+ ):
50
+ """Iterate over edges of a Borůvka's algorithm min/max spanning tree.
51
+
52
+ Parameters
53
+ ----------
54
+ G : NetworkX Graph
55
+ The edges of `G` must have distinct weights,
56
+ otherwise the edges may not form a tree.
57
+
58
+ minimum : bool (default: True)
59
+ Find the minimum (True) or maximum (False) spanning tree.
60
+
61
+ weight : string (default: 'weight')
62
+ The name of the edge attribute holding the edge weights.
63
+
64
+ keys : bool (default: True)
65
+ This argument is ignored since this function is not
66
+ implemented for multigraphs; it exists only for consistency
67
+ with the other minimum spanning tree functions.
68
+
69
+ data : bool (default: True)
70
+ Flag for whether to yield edge attribute dicts.
71
+ If True, yield edges `(u, v, d)`, where `d` is the attribute dict.
72
+ If False, yield edges `(u, v)`.
73
+
74
+ ignore_nan : bool (default: False)
75
+ If a NaN is found as an edge weight normally an exception is raised.
76
+ If `ignore_nan is True` then that edge is ignored instead.
77
+
78
+ """
79
+ # Initialize a forest, assuming initially that it is the discrete
80
+ # partition of the nodes of the graph.
81
+ forest = UnionFind(G)
82
+
83
+ def best_edge(component):
84
+ """Returns the optimum (minimum or maximum) edge on the edge
85
+ boundary of the given set of nodes.
86
+
87
+ A return value of ``None`` indicates an empty boundary.
88
+
89
+ """
90
+ sign = 1 if minimum else -1
91
+ minwt = float("inf")
92
+ boundary = None
93
+ for e in nx.edge_boundary(G, component, data=True):
94
+ wt = e[-1].get(weight, 1) * sign
95
+ if isnan(wt):
96
+ if ignore_nan:
97
+ continue
98
+ msg = f"NaN found as an edge weight. Edge {e}"
99
+ raise ValueError(msg)
100
+ if wt < minwt:
101
+ minwt = wt
102
+ boundary = e
103
+ return boundary
104
+
105
+ # Determine the optimum edge in the edge boundary of each component
106
+ # in the forest.
107
+ best_edges = (best_edge(component) for component in forest.to_sets())
108
+ best_edges = [edge for edge in best_edges if edge is not None]
109
+ # If each entry was ``None``, that means the graph was disconnected,
110
+ # so we are done generating the forest.
111
+ while best_edges:
112
+ # Determine the optimum edge in the edge boundary of each
113
+ # component in the forest.
114
+ #
115
+ # This must be a sequence, not an iterator. In this list, the
116
+ # same edge may appear twice, in different orientations (but
117
+ # that's okay, since a union operation will be called on the
118
+ # endpoints the first time it is seen, but not the second time).
119
+ #
120
+ # Any ``None`` indicates that the edge boundary for that
121
+ # component was empty, so that part of the forest has been
122
+ # completed.
123
+ #
124
+ # TODO This can be parallelized, both in the outer loop over
125
+ # each component in the forest and in the computation of the
126
+ # minimum. (Same goes for the identical lines outside the loop.)
127
+ best_edges = (best_edge(component) for component in forest.to_sets())
128
+ best_edges = [edge for edge in best_edges if edge is not None]
129
+ # Join trees in the forest using the best edges, and yield that
130
+ # edge, since it is part of the spanning tree.
131
+ #
132
+ # TODO This loop can be parallelized, to an extent (the union
133
+ # operation must be atomic).
134
+ for u, v, d in best_edges:
135
+ if forest[u] != forest[v]:
136
+ if data:
137
+ yield u, v, d
138
+ else:
139
+ yield u, v
140
+ forest.union(u, v)
141
+
142
+
143
+ @nx._dispatchable(
144
+ edge_attrs={"weight": None, "partition": None}, preserve_edge_attrs="data"
145
+ )
146
+ def kruskal_mst_edges(
147
+ G, minimum, weight="weight", keys=True, data=True, ignore_nan=False, partition=None
148
+ ):
149
+ """
150
+ Iterate over edge of a Kruskal's algorithm min/max spanning tree.
151
+
152
+ Parameters
153
+ ----------
154
+ G : NetworkX Graph
155
+ The graph holding the tree of interest.
156
+
157
+ minimum : bool (default: True)
158
+ Find the minimum (True) or maximum (False) spanning tree.
159
+
160
+ weight : string (default: 'weight')
161
+ The name of the edge attribute holding the edge weights.
162
+
163
+ keys : bool (default: True)
164
+ If `G` is a multigraph, `keys` controls whether edge keys ar yielded.
165
+ Otherwise `keys` is ignored.
166
+
167
+ data : bool (default: True)
168
+ Flag for whether to yield edge attribute dicts.
169
+ If True, yield edges `(u, v, d)`, where `d` is the attribute dict.
170
+ If False, yield edges `(u, v)`.
171
+
172
+ ignore_nan : bool (default: False)
173
+ If a NaN is found as an edge weight normally an exception is raised.
174
+ If `ignore_nan is True` then that edge is ignored instead.
175
+
176
+ partition : string (default: None)
177
+ The name of the edge attribute holding the partition data, if it exists.
178
+ Partition data is written to the edges using the `EdgePartition` enum.
179
+ If a partition exists, all included edges and none of the excluded edges
180
+ will appear in the final tree. Open edges may or may not be used.
181
+
182
+ Yields
183
+ ------
184
+ edge tuple
185
+ The edges as discovered by Kruskal's method. Each edge can
186
+ take the following forms: `(u, v)`, `(u, v, d)` or `(u, v, k, d)`
187
+ depending on the `key` and `data` parameters
188
+ """
189
+ subtrees = UnionFind()
190
+ if G.is_multigraph():
191
+ edges = G.edges(keys=True, data=True)
192
+ else:
193
+ edges = G.edges(data=True)
194
+
195
+ # Sort the edges of the graph with respect to the partition data.
196
+ # Edges are returned in the following order:
197
+
198
+ # * Included edges
199
+ # * Open edges from smallest to largest weight
200
+ # * Excluded edges
201
+ included_edges = []
202
+ open_edges = []
203
+ for e in edges:
204
+ d = e[-1]
205
+ wt = d.get(weight, 1)
206
+ if isnan(wt):
207
+ if ignore_nan:
208
+ continue
209
+ raise ValueError(f"NaN found as an edge weight. Edge {e}")
210
+
211
+ edge = (wt,) + e
212
+ if d.get(partition) == EdgePartition.INCLUDED:
213
+ included_edges.append(edge)
214
+ elif d.get(partition) == EdgePartition.EXCLUDED:
215
+ continue
216
+ else:
217
+ open_edges.append(edge)
218
+
219
+ if minimum:
220
+ sorted_open_edges = sorted(open_edges, key=itemgetter(0))
221
+ else:
222
+ sorted_open_edges = sorted(open_edges, key=itemgetter(0), reverse=True)
223
+
224
+ # Condense the lists into one
225
+ included_edges.extend(sorted_open_edges)
226
+ sorted_edges = included_edges
227
+ del open_edges, sorted_open_edges, included_edges
228
+
229
+ # Multigraphs need to handle edge keys in addition to edge data.
230
+ if G.is_multigraph():
231
+ for wt, u, v, k, d in sorted_edges:
232
+ if subtrees[u] != subtrees[v]:
233
+ if keys:
234
+ if data:
235
+ yield u, v, k, d
236
+ else:
237
+ yield u, v, k
238
+ else:
239
+ if data:
240
+ yield u, v, d
241
+ else:
242
+ yield u, v
243
+ subtrees.union(u, v)
244
+ else:
245
+ for wt, u, v, d in sorted_edges:
246
+ if subtrees[u] != subtrees[v]:
247
+ if data:
248
+ yield u, v, d
249
+ else:
250
+ yield u, v
251
+ subtrees.union(u, v)
252
+
253
+
254
+ @nx._dispatchable(edge_attrs="weight", preserve_edge_attrs="data")
255
+ def prim_mst_edges(G, minimum, weight="weight", keys=True, data=True, ignore_nan=False):
256
+ """Iterate over edges of Prim's algorithm min/max spanning tree.
257
+
258
+ Parameters
259
+ ----------
260
+ G : NetworkX Graph
261
+ The graph holding the tree of interest.
262
+
263
+ minimum : bool (default: True)
264
+ Find the minimum (True) or maximum (False) spanning tree.
265
+
266
+ weight : string (default: 'weight')
267
+ The name of the edge attribute holding the edge weights.
268
+
269
+ keys : bool (default: True)
270
+ If `G` is a multigraph, `keys` controls whether edge keys ar yielded.
271
+ Otherwise `keys` is ignored.
272
+
273
+ data : bool (default: True)
274
+ Flag for whether to yield edge attribute dicts.
275
+ If True, yield edges `(u, v, d)`, where `d` is the attribute dict.
276
+ If False, yield edges `(u, v)`.
277
+
278
+ ignore_nan : bool (default: False)
279
+ If a NaN is found as an edge weight normally an exception is raised.
280
+ If `ignore_nan is True` then that edge is ignored instead.
281
+
282
+ """
283
+ is_multigraph = G.is_multigraph()
284
+
285
+ nodes = set(G)
286
+ c = count()
287
+
288
+ sign = 1 if minimum else -1
289
+
290
+ while nodes:
291
+ u = nodes.pop()
292
+ frontier = []
293
+ visited = {u}
294
+ if is_multigraph:
295
+ for v, keydict in G.adj[u].items():
296
+ for k, d in keydict.items():
297
+ wt = d.get(weight, 1) * sign
298
+ if isnan(wt):
299
+ if ignore_nan:
300
+ continue
301
+ msg = f"NaN found as an edge weight. Edge {(u, v, k, d)}"
302
+ raise ValueError(msg)
303
+ heappush(frontier, (wt, next(c), u, v, k, d))
304
+ else:
305
+ for v, d in G.adj[u].items():
306
+ wt = d.get(weight, 1) * sign
307
+ if isnan(wt):
308
+ if ignore_nan:
309
+ continue
310
+ msg = f"NaN found as an edge weight. Edge {(u, v, d)}"
311
+ raise ValueError(msg)
312
+ heappush(frontier, (wt, next(c), u, v, d))
313
+ while nodes and frontier:
314
+ if is_multigraph:
315
+ W, _, u, v, k, d = heappop(frontier)
316
+ else:
317
+ W, _, u, v, d = heappop(frontier)
318
+ if v in visited or v not in nodes:
319
+ continue
320
+ # Multigraphs need to handle edge keys in addition to edge data.
321
+ if is_multigraph and keys:
322
+ if data:
323
+ yield u, v, k, d
324
+ else:
325
+ yield u, v, k
326
+ else:
327
+ if data:
328
+ yield u, v, d
329
+ else:
330
+ yield u, v
331
+ # update frontier
332
+ visited.add(v)
333
+ nodes.discard(v)
334
+ if is_multigraph:
335
+ for w, keydict in G.adj[v].items():
336
+ if w in visited:
337
+ continue
338
+ for k2, d2 in keydict.items():
339
+ new_weight = d2.get(weight, 1) * sign
340
+ if isnan(new_weight):
341
+ if ignore_nan:
342
+ continue
343
+ msg = f"NaN found as an edge weight. Edge {(v, w, k2, d2)}"
344
+ raise ValueError(msg)
345
+ heappush(frontier, (new_weight, next(c), v, w, k2, d2))
346
+ else:
347
+ for w, d2 in G.adj[v].items():
348
+ if w in visited:
349
+ continue
350
+ new_weight = d2.get(weight, 1) * sign
351
+ if isnan(new_weight):
352
+ if ignore_nan:
353
+ continue
354
+ msg = f"NaN found as an edge weight. Edge {(v, w, d2)}"
355
+ raise ValueError(msg)
356
+ heappush(frontier, (new_weight, next(c), v, w, d2))
357
+
358
+
359
+ ALGORITHMS = {
360
+ "boruvka": boruvka_mst_edges,
361
+ "borůvka": boruvka_mst_edges,
362
+ "kruskal": kruskal_mst_edges,
363
+ "prim": prim_mst_edges,
364
+ }
365
+
366
+
367
+ @not_implemented_for("directed")
368
+ @nx._dispatchable(edge_attrs="weight", preserve_edge_attrs="data")
369
+ def minimum_spanning_edges(
370
+ G, algorithm="kruskal", weight="weight", keys=True, data=True, ignore_nan=False
371
+ ):
372
+ """Generate edges in a minimum spanning forest of an undirected
373
+ weighted graph.
374
+
375
+ A minimum spanning tree is a subgraph of the graph (a tree)
376
+ with the minimum sum of edge weights. A spanning forest is a
377
+ union of the spanning trees for each connected component of the graph.
378
+
379
+ Parameters
380
+ ----------
381
+ G : undirected Graph
382
+ An undirected graph. If `G` is connected, then the algorithm finds a
383
+ spanning tree. Otherwise, a spanning forest is found.
384
+
385
+ algorithm : string
386
+ The algorithm to use when finding a minimum spanning tree. Valid
387
+ choices are 'kruskal', 'prim', or 'boruvka'. The default is 'kruskal'.
388
+
389
+ weight : string
390
+ Edge data key to use for weight (default 'weight').
391
+
392
+ keys : bool
393
+ Whether to yield edge key in multigraphs in addition to the edge.
394
+ If `G` is not a multigraph, this is ignored.
395
+
396
+ data : bool, optional
397
+ If True yield the edge data along with the edge.
398
+
399
+ ignore_nan : bool (default: False)
400
+ If a NaN is found as an edge weight normally an exception is raised.
401
+ If `ignore_nan is True` then that edge is ignored instead.
402
+
403
+ Returns
404
+ -------
405
+ edges : iterator
406
+ An iterator over edges in a maximum spanning tree of `G`.
407
+ Edges connecting nodes `u` and `v` are represented as tuples:
408
+ `(u, v, k, d)` or `(u, v, k)` or `(u, v, d)` or `(u, v)`
409
+
410
+ If `G` is a multigraph, `keys` indicates whether the edge key `k` will
411
+ be reported in the third position in the edge tuple. `data` indicates
412
+ whether the edge datadict `d` will appear at the end of the edge tuple.
413
+
414
+ If `G` is not a multigraph, the tuples are `(u, v, d)` if `data` is True
415
+ or `(u, v)` if `data` is False.
416
+
417
+ Examples
418
+ --------
419
+ >>> from networkx.algorithms import tree
420
+
421
+ Find minimum spanning edges by Kruskal's algorithm
422
+
423
+ >>> G = nx.cycle_graph(4)
424
+ >>> G.add_edge(0, 3, weight=2)
425
+ >>> mst = tree.minimum_spanning_edges(G, algorithm="kruskal", data=False)
426
+ >>> edgelist = list(mst)
427
+ >>> sorted(sorted(e) for e in edgelist)
428
+ [[0, 1], [1, 2], [2, 3]]
429
+
430
+ Find minimum spanning edges by Prim's algorithm
431
+
432
+ >>> G = nx.cycle_graph(4)
433
+ >>> G.add_edge(0, 3, weight=2)
434
+ >>> mst = tree.minimum_spanning_edges(G, algorithm="prim", data=False)
435
+ >>> edgelist = list(mst)
436
+ >>> sorted(sorted(e) for e in edgelist)
437
+ [[0, 1], [1, 2], [2, 3]]
438
+
439
+ Notes
440
+ -----
441
+ For Borůvka's algorithm, each edge must have a weight attribute, and
442
+ each edge weight must be distinct.
443
+
444
+ For the other algorithms, if the graph edges do not have a weight
445
+ attribute a default weight of 1 will be used.
446
+
447
+ Modified code from David Eppstein, April 2006
448
+ http://www.ics.uci.edu/~eppstein/PADS/
449
+
450
+ """
451
+ try:
452
+ algo = ALGORITHMS[algorithm]
453
+ except KeyError as err:
454
+ msg = f"{algorithm} is not a valid choice for an algorithm."
455
+ raise ValueError(msg) from err
456
+
457
+ return algo(
458
+ G, minimum=True, weight=weight, keys=keys, data=data, ignore_nan=ignore_nan
459
+ )
460
+
461
+
462
+ @not_implemented_for("directed")
463
+ @nx._dispatchable(edge_attrs="weight", preserve_edge_attrs="data")
464
+ def maximum_spanning_edges(
465
+ G, algorithm="kruskal", weight="weight", keys=True, data=True, ignore_nan=False
466
+ ):
467
+ """Generate edges in a maximum spanning forest of an undirected
468
+ weighted graph.
469
+
470
+ A maximum spanning tree is a subgraph of the graph (a tree)
471
+ with the maximum possible sum of edge weights. A spanning forest is a
472
+ union of the spanning trees for each connected component of the graph.
473
+
474
+ Parameters
475
+ ----------
476
+ G : undirected Graph
477
+ An undirected graph. If `G` is connected, then the algorithm finds a
478
+ spanning tree. Otherwise, a spanning forest is found.
479
+
480
+ algorithm : string
481
+ The algorithm to use when finding a maximum spanning tree. Valid
482
+ choices are 'kruskal', 'prim', or 'boruvka'. The default is 'kruskal'.
483
+
484
+ weight : string
485
+ Edge data key to use for weight (default 'weight').
486
+
487
+ keys : bool
488
+ Whether to yield edge key in multigraphs in addition to the edge.
489
+ If `G` is not a multigraph, this is ignored.
490
+
491
+ data : bool, optional
492
+ If True yield the edge data along with the edge.
493
+
494
+ ignore_nan : bool (default: False)
495
+ If a NaN is found as an edge weight normally an exception is raised.
496
+ If `ignore_nan is True` then that edge is ignored instead.
497
+
498
+ Returns
499
+ -------
500
+ edges : iterator
501
+ An iterator over edges in a maximum spanning tree of `G`.
502
+ Edges connecting nodes `u` and `v` are represented as tuples:
503
+ `(u, v, k, d)` or `(u, v, k)` or `(u, v, d)` or `(u, v)`
504
+
505
+ If `G` is a multigraph, `keys` indicates whether the edge key `k` will
506
+ be reported in the third position in the edge tuple. `data` indicates
507
+ whether the edge datadict `d` will appear at the end of the edge tuple.
508
+
509
+ If `G` is not a multigraph, the tuples are `(u, v, d)` if `data` is True
510
+ or `(u, v)` if `data` is False.
511
+
512
+ Examples
513
+ --------
514
+ >>> from networkx.algorithms import tree
515
+
516
+ Find maximum spanning edges by Kruskal's algorithm
517
+
518
+ >>> G = nx.cycle_graph(4)
519
+ >>> G.add_edge(0, 3, weight=2)
520
+ >>> mst = tree.maximum_spanning_edges(G, algorithm="kruskal", data=False)
521
+ >>> edgelist = list(mst)
522
+ >>> sorted(sorted(e) for e in edgelist)
523
+ [[0, 1], [0, 3], [1, 2]]
524
+
525
+ Find maximum spanning edges by Prim's algorithm
526
+
527
+ >>> G = nx.cycle_graph(4)
528
+ >>> G.add_edge(0, 3, weight=2) # assign weight 2 to edge 0-3
529
+ >>> mst = tree.maximum_spanning_edges(G, algorithm="prim", data=False)
530
+ >>> edgelist = list(mst)
531
+ >>> sorted(sorted(e) for e in edgelist)
532
+ [[0, 1], [0, 3], [2, 3]]
533
+
534
+ Notes
535
+ -----
536
+ For Borůvka's algorithm, each edge must have a weight attribute, and
537
+ each edge weight must be distinct.
538
+
539
+ For the other algorithms, if the graph edges do not have a weight
540
+ attribute a default weight of 1 will be used.
541
+
542
+ Modified code from David Eppstein, April 2006
543
+ http://www.ics.uci.edu/~eppstein/PADS/
544
+ """
545
+ try:
546
+ algo = ALGORITHMS[algorithm]
547
+ except KeyError as err:
548
+ msg = f"{algorithm} is not a valid choice for an algorithm."
549
+ raise ValueError(msg) from err
550
+
551
+ return algo(
552
+ G, minimum=False, weight=weight, keys=keys, data=data, ignore_nan=ignore_nan
553
+ )
554
+
555
+
556
+ @nx._dispatchable(preserve_all_attrs=True, returns_graph=True)
557
+ def minimum_spanning_tree(G, weight="weight", algorithm="kruskal", ignore_nan=False):
558
+ """Returns a minimum spanning tree or forest on an undirected graph `G`.
559
+
560
+ Parameters
561
+ ----------
562
+ G : undirected graph
563
+ An undirected graph. If `G` is connected, then the algorithm finds a
564
+ spanning tree. Otherwise, a spanning forest is found.
565
+
566
+ weight : str
567
+ Data key to use for edge weights.
568
+
569
+ algorithm : string
570
+ The algorithm to use when finding a minimum spanning tree. Valid
571
+ choices are 'kruskal', 'prim', or 'boruvka'. The default is
572
+ 'kruskal'.
573
+
574
+ ignore_nan : bool (default: False)
575
+ If a NaN is found as an edge weight normally an exception is raised.
576
+ If `ignore_nan is True` then that edge is ignored instead.
577
+
578
+ Returns
579
+ -------
580
+ G : NetworkX Graph
581
+ A minimum spanning tree or forest.
582
+
583
+ Examples
584
+ --------
585
+ >>> G = nx.cycle_graph(4)
586
+ >>> G.add_edge(0, 3, weight=2)
587
+ >>> T = nx.minimum_spanning_tree(G)
588
+ >>> sorted(T.edges(data=True))
589
+ [(0, 1, {}), (1, 2, {}), (2, 3, {})]
590
+
591
+
592
+ Notes
593
+ -----
594
+ For Borůvka's algorithm, each edge must have a weight attribute, and
595
+ each edge weight must be distinct.
596
+
597
+ For the other algorithms, if the graph edges do not have a weight
598
+ attribute a default weight of 1 will be used.
599
+
600
+ There may be more than one tree with the same minimum or maximum weight.
601
+ See :mod:`networkx.tree.recognition` for more detailed definitions.
602
+
603
+ Isolated nodes with self-loops are in the tree as edgeless isolated nodes.
604
+
605
+ """
606
+ edges = minimum_spanning_edges(
607
+ G, algorithm, weight, keys=True, data=True, ignore_nan=ignore_nan
608
+ )
609
+ T = G.__class__() # Same graph class as G
610
+ T.graph.update(G.graph)
611
+ T.add_nodes_from(G.nodes.items())
612
+ T.add_edges_from(edges)
613
+ return T
614
+
615
+
616
+ @nx._dispatchable(preserve_all_attrs=True, returns_graph=True)
617
+ def partition_spanning_tree(
618
+ G, minimum=True, weight="weight", partition="partition", ignore_nan=False
619
+ ):
620
+ """
621
+ Find a spanning tree while respecting a partition of edges.
622
+
623
+ Edges can be flagged as either `INCLUDED` which are required to be in the
624
+ returned tree, `EXCLUDED`, which cannot be in the returned tree and `OPEN`.
625
+
626
+ This is used in the SpanningTreeIterator to create new partitions following
627
+ the algorithm of Sörensen and Janssens [1]_.
628
+
629
+ Parameters
630
+ ----------
631
+ G : undirected graph
632
+ An undirected graph.
633
+
634
+ minimum : bool (default: True)
635
+ Determines whether the returned tree is the minimum spanning tree of
636
+ the partition of the maximum one.
637
+
638
+ weight : str
639
+ Data key to use for edge weights.
640
+
641
+ partition : str
642
+ The key for the edge attribute containing the partition
643
+ data on the graph. Edges can be included, excluded or open using the
644
+ `EdgePartition` enum.
645
+
646
+ ignore_nan : bool (default: False)
647
+ If a NaN is found as an edge weight normally an exception is raised.
648
+ If `ignore_nan is True` then that edge is ignored instead.
649
+
650
+
651
+ Returns
652
+ -------
653
+ G : NetworkX Graph
654
+ A minimum spanning tree using all of the included edges in the graph and
655
+ none of the excluded edges.
656
+
657
+ References
658
+ ----------
659
+ .. [1] G.K. Janssens, K. Sörensen, An algorithm to generate all spanning
660
+ trees in order of increasing cost, Pesquisa Operacional, 2005-08,
661
+ Vol. 25 (2), p. 219-229,
662
+ https://www.scielo.br/j/pope/a/XHswBwRwJyrfL88dmMwYNWp/?lang=en
663
+ """
664
+ edges = kruskal_mst_edges(
665
+ G,
666
+ minimum,
667
+ weight,
668
+ keys=True,
669
+ data=True,
670
+ ignore_nan=ignore_nan,
671
+ partition=partition,
672
+ )
673
+ T = G.__class__() # Same graph class as G
674
+ T.graph.update(G.graph)
675
+ T.add_nodes_from(G.nodes.items())
676
+ T.add_edges_from(edges)
677
+ return T
678
+
679
+
680
+ @nx._dispatchable(preserve_all_attrs=True, returns_graph=True)
681
+ def maximum_spanning_tree(G, weight="weight", algorithm="kruskal", ignore_nan=False):
682
+ """Returns a maximum spanning tree or forest on an undirected graph `G`.
683
+
684
+ Parameters
685
+ ----------
686
+ G : undirected graph
687
+ An undirected graph. If `G` is connected, then the algorithm finds a
688
+ spanning tree. Otherwise, a spanning forest is found.
689
+
690
+ weight : str
691
+ Data key to use for edge weights.
692
+
693
+ algorithm : string
694
+ The algorithm to use when finding a maximum spanning tree. Valid
695
+ choices are 'kruskal', 'prim', or 'boruvka'. The default is
696
+ 'kruskal'.
697
+
698
+ ignore_nan : bool (default: False)
699
+ If a NaN is found as an edge weight normally an exception is raised.
700
+ If `ignore_nan is True` then that edge is ignored instead.
701
+
702
+
703
+ Returns
704
+ -------
705
+ G : NetworkX Graph
706
+ A maximum spanning tree or forest.
707
+
708
+
709
+ Examples
710
+ --------
711
+ >>> G = nx.cycle_graph(4)
712
+ >>> G.add_edge(0, 3, weight=2)
713
+ >>> T = nx.maximum_spanning_tree(G)
714
+ >>> sorted(T.edges(data=True))
715
+ [(0, 1, {}), (0, 3, {'weight': 2}), (1, 2, {})]
716
+
717
+
718
+ Notes
719
+ -----
720
+ For Borůvka's algorithm, each edge must have a weight attribute, and
721
+ each edge weight must be distinct.
722
+
723
+ For the other algorithms, if the graph edges do not have a weight
724
+ attribute a default weight of 1 will be used.
725
+
726
+ There may be more than one tree with the same minimum or maximum weight.
727
+ See :mod:`networkx.tree.recognition` for more detailed definitions.
728
+
729
+ Isolated nodes with self-loops are in the tree as edgeless isolated nodes.
730
+
731
+ """
732
+ edges = maximum_spanning_edges(
733
+ G, algorithm, weight, keys=True, data=True, ignore_nan=ignore_nan
734
+ )
735
+ edges = list(edges)
736
+ T = G.__class__() # Same graph class as G
737
+ T.graph.update(G.graph)
738
+ T.add_nodes_from(G.nodes.items())
739
+ T.add_edges_from(edges)
740
+ return T
741
+
742
+
743
+ @py_random_state(3)
744
+ @nx._dispatchable(preserve_edge_attrs=True, returns_graph=True)
745
+ def random_spanning_tree(G, weight=None, *, multiplicative=True, seed=None):
746
+ """
747
+ Sample a random spanning tree using the edges weights of `G`.
748
+
749
+ This function supports two different methods for determining the
750
+ probability of the graph. If ``multiplicative=True``, the probability
751
+ is based on the product of edge weights, and if ``multiplicative=False``
752
+ it is based on the sum of the edge weight. However, since it is
753
+ easier to determine the total weight of all spanning trees for the
754
+ multiplicative version, that is significantly faster and should be used if
755
+ possible. Additionally, setting `weight` to `None` will cause a spanning tree
756
+ to be selected with uniform probability.
757
+
758
+ The function uses algorithm A8 in [1]_ .
759
+
760
+ Parameters
761
+ ----------
762
+ G : nx.Graph
763
+ An undirected version of the original graph.
764
+
765
+ weight : string
766
+ The edge key for the edge attribute holding edge weight.
767
+
768
+ multiplicative : bool, default=True
769
+ If `True`, the probability of each tree is the product of its edge weight
770
+ over the sum of the product of all the spanning trees in the graph. If
771
+ `False`, the probability is the sum of its edge weight over the sum of
772
+ the sum of weights for all spanning trees in the graph.
773
+
774
+ seed : integer, random_state, or None (default)
775
+ Indicator of random number generation state.
776
+ See :ref:`Randomness<randomness>`.
777
+
778
+ Returns
779
+ -------
780
+ nx.Graph
781
+ A spanning tree using the distribution defined by the weight of the tree.
782
+
783
+ References
784
+ ----------
785
+ .. [1] V. Kulkarni, Generating random combinatorial objects, Journal of
786
+ Algorithms, 11 (1990), pp. 185–207
787
+ """
788
+
789
+ def find_node(merged_nodes, node):
790
+ """
791
+ We can think of clusters of contracted nodes as having one
792
+ representative in the graph. Each node which is not in merged_nodes
793
+ is still its own representative. Since a representative can be later
794
+ contracted, we need to recursively search though the dict to find
795
+ the final representative, but once we know it we can use path
796
+ compression to speed up the access of the representative for next time.
797
+
798
+ This cannot be replaced by the standard NetworkX union_find since that
799
+ data structure will merge nodes with less representing nodes into the
800
+ one with more representing nodes but this function requires we merge
801
+ them using the order that contract_edges contracts using.
802
+
803
+ Parameters
804
+ ----------
805
+ merged_nodes : dict
806
+ The dict storing the mapping from node to representative
807
+ node
808
+ The node whose representative we seek
809
+
810
+ Returns
811
+ -------
812
+ The representative of the `node`
813
+ """
814
+ if node not in merged_nodes:
815
+ return node
816
+ else:
817
+ rep = find_node(merged_nodes, merged_nodes[node])
818
+ merged_nodes[node] = rep
819
+ return rep
820
+
821
+ def prepare_graph():
822
+ """
823
+ For the graph `G`, remove all edges not in the set `V` and then
824
+ contract all edges in the set `U`.
825
+
826
+ Returns
827
+ -------
828
+ A copy of `G` which has had all edges not in `V` removed and all edges
829
+ in `U` contracted.
830
+ """
831
+
832
+ # The result is a MultiGraph version of G so that parallel edges are
833
+ # allowed during edge contraction
834
+ result = nx.MultiGraph(incoming_graph_data=G)
835
+
836
+ # Remove all edges not in V
837
+ edges_to_remove = set(result.edges()).difference(V)
838
+ result.remove_edges_from(edges_to_remove)
839
+
840
+ # Contract all edges in U
841
+ #
842
+ # Imagine that you have two edges to contract and they share an
843
+ # endpoint like this:
844
+ # [0] ----- [1] ----- [2]
845
+ # If we contract (0, 1) first, the contraction function will always
846
+ # delete the second node it is passed so the resulting graph would be
847
+ # [0] ----- [2]
848
+ # and edge (1, 2) no longer exists but (0, 2) would need to be contracted
849
+ # in its place now. That is why I use the below dict as a merge-find
850
+ # data structure with path compression to track how the nodes are merged.
851
+ merged_nodes = {}
852
+
853
+ for u, v in U:
854
+ u_rep = find_node(merged_nodes, u)
855
+ v_rep = find_node(merged_nodes, v)
856
+ # We cannot contract a node with itself
857
+ if u_rep == v_rep:
858
+ continue
859
+ nx.contracted_nodes(result, u_rep, v_rep, self_loops=False, copy=False)
860
+ merged_nodes[v_rep] = u_rep
861
+
862
+ return merged_nodes, result
863
+
864
+ def spanning_tree_total_weight(G, weight):
865
+ """
866
+ Find the sum of weights of the spanning trees of `G` using the
867
+ appropriate `method`.
868
+
869
+ This is easy if the chosen method is 'multiplicative', since we can
870
+ use Kirchhoff's Tree Matrix Theorem directly. However, with the
871
+ 'additive' method, this process is slightly more complex and less
872
+ computationally efficient as we have to find the number of spanning
873
+ trees which contain each possible edge in the graph.
874
+
875
+ Parameters
876
+ ----------
877
+ G : NetworkX Graph
878
+ The graph to find the total weight of all spanning trees on.
879
+
880
+ weight : string
881
+ The key for the weight edge attribute of the graph.
882
+
883
+ Returns
884
+ -------
885
+ float
886
+ The sum of either the multiplicative or additive weight for all
887
+ spanning trees in the graph.
888
+ """
889
+ if multiplicative:
890
+ return number_of_spanning_trees(G, weight=weight)
891
+ else:
892
+ # There are two cases for the total spanning tree additive weight.
893
+ # 1. There is one edge in the graph. Then the only spanning tree is
894
+ # that edge itself, which will have a total weight of that edge
895
+ # itself.
896
+ if G.number_of_edges() == 1:
897
+ return G.edges(data=weight).__iter__().__next__()[2]
898
+ # 2. There are no edges or two or more edges in the graph. Then, we find the
899
+ # total weight of the spanning trees using the formula in the
900
+ # reference paper: take the weight of each edge and multiply it by
901
+ # the number of spanning trees which include that edge. This
902
+ # can be accomplished by contracting the edge and finding the
903
+ # multiplicative total spanning tree weight if the weight of each edge
904
+ # is assumed to be 1, which is conveniently built into networkx already,
905
+ # by calling number_of_spanning_trees with weight=None.
906
+ # Note that with no edges the returned value is just zero.
907
+ else:
908
+ total = 0
909
+ for u, v, w in G.edges(data=weight):
910
+ total += w * nx.number_of_spanning_trees(
911
+ nx.contracted_edge(G, edge=(u, v), self_loops=False),
912
+ weight=None,
913
+ )
914
+ return total
915
+
916
+ if G.number_of_nodes() < 2:
917
+ # no edges in the spanning tree
918
+ return nx.empty_graph(G.nodes)
919
+
920
+ U = set()
921
+ st_cached_value = 0
922
+ V = set(G.edges())
923
+ shuffled_edges = list(G.edges())
924
+ seed.shuffle(shuffled_edges)
925
+
926
+ for u, v in shuffled_edges:
927
+ e_weight = G[u][v][weight] if weight is not None else 1
928
+ node_map, prepared_G = prepare_graph()
929
+ G_total_tree_weight = spanning_tree_total_weight(prepared_G, weight)
930
+ # Add the edge to U so that we can compute the total tree weight
931
+ # assuming we include that edge
932
+ # Now, if (u, v) cannot exist in G because it is fully contracted out
933
+ # of existence, then it by definition cannot influence G_e's Kirchhoff
934
+ # value. But, we also cannot pick it.
935
+ rep_edge = (find_node(node_map, u), find_node(node_map, v))
936
+ # Check to see if the 'representative edge' for the current edge is
937
+ # in prepared_G. If so, then we can pick it.
938
+ if rep_edge in prepared_G.edges:
939
+ prepared_G_e = nx.contracted_edge(
940
+ prepared_G, edge=rep_edge, self_loops=False
941
+ )
942
+ G_e_total_tree_weight = spanning_tree_total_weight(prepared_G_e, weight)
943
+ if multiplicative:
944
+ threshold = e_weight * G_e_total_tree_weight / G_total_tree_weight
945
+ else:
946
+ numerator = (st_cached_value + e_weight) * nx.number_of_spanning_trees(
947
+ prepared_G_e
948
+ ) + G_e_total_tree_weight
949
+ denominator = (
950
+ st_cached_value * nx.number_of_spanning_trees(prepared_G)
951
+ + G_total_tree_weight
952
+ )
953
+ threshold = numerator / denominator
954
+ else:
955
+ threshold = 0.0
956
+ z = seed.uniform(0.0, 1.0)
957
+ if z > threshold:
958
+ # Remove the edge from V since we did not pick it.
959
+ V.remove((u, v))
960
+ else:
961
+ # Add the edge to U since we picked it.
962
+ st_cached_value += e_weight
963
+ U.add((u, v))
964
+ # If we decide to keep an edge, it may complete the spanning tree.
965
+ if len(U) == G.number_of_nodes() - 1:
966
+ spanning_tree = nx.Graph()
967
+ spanning_tree.add_edges_from(U)
968
+ return spanning_tree
969
+ raise Exception(f"Something went wrong! Only {len(U)} edges in the spanning tree!")
970
+
971
+
972
+ class SpanningTreeIterator:
973
+ """
974
+ Iterate over all spanning trees of a graph in either increasing or
975
+ decreasing cost.
976
+
977
+ Notes
978
+ -----
979
+ This iterator uses the partition scheme from [1]_ (included edges,
980
+ excluded edges and open edges) as well as a modified Kruskal's Algorithm
981
+ to generate minimum spanning trees which respect the partition of edges.
982
+ For spanning trees with the same weight, ties are broken arbitrarily.
983
+
984
+ References
985
+ ----------
986
+ .. [1] G.K. Janssens, K. Sörensen, An algorithm to generate all spanning
987
+ trees in order of increasing cost, Pesquisa Operacional, 2005-08,
988
+ Vol. 25 (2), p. 219-229,
989
+ https://www.scielo.br/j/pope/a/XHswBwRwJyrfL88dmMwYNWp/?lang=en
990
+ """
991
+
992
+ @dataclass(order=True)
993
+ class Partition:
994
+ """
995
+ This dataclass represents a partition and stores a dict with the edge
996
+ data and the weight of the minimum spanning tree of the partition dict.
997
+ """
998
+
999
+ mst_weight: float
1000
+ partition_dict: dict = field(compare=False)
1001
+
1002
+ def __copy__(self):
1003
+ return SpanningTreeIterator.Partition(
1004
+ self.mst_weight, self.partition_dict.copy()
1005
+ )
1006
+
1007
+ def __init__(self, G, weight="weight", minimum=True, ignore_nan=False):
1008
+ """
1009
+ Initialize the iterator
1010
+
1011
+ Parameters
1012
+ ----------
1013
+ G : nx.Graph
1014
+ The directed graph which we need to iterate trees over
1015
+
1016
+ weight : String, default = "weight"
1017
+ The edge attribute used to store the weight of the edge
1018
+
1019
+ minimum : bool, default = True
1020
+ Return the trees in increasing order while true and decreasing order
1021
+ while false.
1022
+
1023
+ ignore_nan : bool, default = False
1024
+ If a NaN is found as an edge weight normally an exception is raised.
1025
+ If `ignore_nan is True` then that edge is ignored instead.
1026
+ """
1027
+ self.G = G.copy()
1028
+ self.G.__networkx_cache__ = None # Disable caching
1029
+ self.weight = weight
1030
+ self.minimum = minimum
1031
+ self.ignore_nan = ignore_nan
1032
+ # Randomly create a key for an edge attribute to hold the partition data
1033
+ self.partition_key = (
1034
+ "SpanningTreeIterators super secret partition attribute name"
1035
+ )
1036
+
1037
+ def __iter__(self):
1038
+ """
1039
+ Returns
1040
+ -------
1041
+ SpanningTreeIterator
1042
+ The iterator object for this graph
1043
+ """
1044
+ self.partition_queue = PriorityQueue()
1045
+ self._clear_partition(self.G)
1046
+ mst_weight = partition_spanning_tree(
1047
+ self.G, self.minimum, self.weight, self.partition_key, self.ignore_nan
1048
+ ).size(weight=self.weight)
1049
+
1050
+ self.partition_queue.put(
1051
+ self.Partition(mst_weight if self.minimum else -mst_weight, {})
1052
+ )
1053
+
1054
+ return self
1055
+
1056
+ def __next__(self):
1057
+ """
1058
+ Returns
1059
+ -------
1060
+ (multi)Graph
1061
+ The spanning tree of next greatest weight, which ties broken
1062
+ arbitrarily.
1063
+ """
1064
+ if self.partition_queue.empty():
1065
+ del self.G, self.partition_queue
1066
+ raise StopIteration
1067
+
1068
+ partition = self.partition_queue.get()
1069
+ self._write_partition(partition)
1070
+ next_tree = partition_spanning_tree(
1071
+ self.G, self.minimum, self.weight, self.partition_key, self.ignore_nan
1072
+ )
1073
+ self._partition(partition, next_tree)
1074
+
1075
+ self._clear_partition(next_tree)
1076
+ return next_tree
1077
+
1078
+ def _partition(self, partition, partition_tree):
1079
+ """
1080
+ Create new partitions based of the minimum spanning tree of the
1081
+ current minimum partition.
1082
+
1083
+ Parameters
1084
+ ----------
1085
+ partition : Partition
1086
+ The Partition instance used to generate the current minimum spanning
1087
+ tree.
1088
+ partition_tree : nx.Graph
1089
+ The minimum spanning tree of the input partition.
1090
+ """
1091
+ # create two new partitions with the data from the input partition dict
1092
+ p1 = self.Partition(0, partition.partition_dict.copy())
1093
+ p2 = self.Partition(0, partition.partition_dict.copy())
1094
+ for e in partition_tree.edges:
1095
+ # determine if the edge was open or included
1096
+ if e not in partition.partition_dict:
1097
+ # This is an open edge
1098
+ p1.partition_dict[e] = EdgePartition.EXCLUDED
1099
+ p2.partition_dict[e] = EdgePartition.INCLUDED
1100
+
1101
+ self._write_partition(p1)
1102
+ p1_mst = partition_spanning_tree(
1103
+ self.G,
1104
+ self.minimum,
1105
+ self.weight,
1106
+ self.partition_key,
1107
+ self.ignore_nan,
1108
+ )
1109
+ p1_mst_weight = p1_mst.size(weight=self.weight)
1110
+ if nx.is_connected(p1_mst):
1111
+ p1.mst_weight = p1_mst_weight if self.minimum else -p1_mst_weight
1112
+ self.partition_queue.put(p1.__copy__())
1113
+ p1.partition_dict = p2.partition_dict.copy()
1114
+
1115
+ def _write_partition(self, partition):
1116
+ """
1117
+ Writes the desired partition into the graph to calculate the minimum
1118
+ spanning tree.
1119
+
1120
+ Parameters
1121
+ ----------
1122
+ partition : Partition
1123
+ A Partition dataclass describing a partition on the edges of the
1124
+ graph.
1125
+ """
1126
+
1127
+ partition_dict = partition.partition_dict
1128
+ partition_key = self.partition_key
1129
+ G = self.G
1130
+
1131
+ edges = (
1132
+ G.edges(keys=True, data=True) if G.is_multigraph() else G.edges(data=True)
1133
+ )
1134
+ for *e, d in edges:
1135
+ d[partition_key] = partition_dict.get(tuple(e), EdgePartition.OPEN)
1136
+
1137
+ def _clear_partition(self, G):
1138
+ """
1139
+ Removes partition data from the graph
1140
+ """
1141
+ partition_key = self.partition_key
1142
+ edges = (
1143
+ G.edges(keys=True, data=True) if G.is_multigraph() else G.edges(data=True)
1144
+ )
1145
+ for *e, d in edges:
1146
+ if partition_key in d:
1147
+ del d[partition_key]
1148
+
1149
+
1150
+ @nx._dispatchable(edge_attrs="weight")
1151
+ def number_of_spanning_trees(G, *, root=None, weight=None):
1152
+ """Returns the number of spanning trees in `G`.
1153
+
1154
+ A spanning tree for an undirected graph is a tree that connects
1155
+ all nodes in the graph. For a directed graph, the analog of a
1156
+ spanning tree is called a (spanning) arborescence. The arborescence
1157
+ includes a unique directed path from the `root` node to each other node.
1158
+ The graph must be weakly connected, and the root must be a node
1159
+ that includes all nodes as successors [3]_. Note that to avoid
1160
+ discussing sink-roots and reverse-arborescences, we have reversed
1161
+ the edge orientation from [3]_ and use the in-degree laplacian.
1162
+
1163
+ This function (when `weight` is `None`) returns the number of
1164
+ spanning trees for an undirected graph and the number of
1165
+ arborescences from a single root node for a directed graph.
1166
+ When `weight` is the name of an edge attribute which holds the
1167
+ weight value of each edge, the function returns the sum over
1168
+ all trees of the multiplicative weight of each tree. That is,
1169
+ the weight of the tree is the product of its edge weights.
1170
+
1171
+ Kirchoff's Tree Matrix Theorem states that any cofactor of the
1172
+ Laplacian matrix of a graph is the number of spanning trees in the
1173
+ graph. (Here we use cofactors for a diagonal entry so that the
1174
+ cofactor becomes the determinant of the matrix with one row
1175
+ and its matching column removed.) For a weighted Laplacian matrix,
1176
+ the cofactor is the sum across all spanning trees of the
1177
+ multiplicative weight of each tree. That is, the weight of each
1178
+ tree is the product of its edge weights. The theorem is also
1179
+ known as Kirchhoff's theorem [1]_ and the Matrix-Tree theorem [2]_.
1180
+
1181
+ For directed graphs, a similar theorem (Tutte's Theorem) holds with
1182
+ the cofactor chosen to be the one with row and column removed that
1183
+ correspond to the root. The cofactor is the number of arborescences
1184
+ with the specified node as root. And the weighted version gives the
1185
+ sum of the arborescence weights with root `root`. The arborescence
1186
+ weight is the product of its edge weights.
1187
+
1188
+ Parameters
1189
+ ----------
1190
+ G : NetworkX graph
1191
+
1192
+ root : node
1193
+ A node in the directed graph `G` that has all nodes as descendants.
1194
+ (This is ignored for undirected graphs.)
1195
+
1196
+ weight : string or None, optional (default=None)
1197
+ The name of the edge attribute holding the edge weight.
1198
+ If `None`, then each edge is assumed to have a weight of 1.
1199
+
1200
+ Returns
1201
+ -------
1202
+ Number
1203
+ Undirected graphs:
1204
+ The number of spanning trees of the graph `G`.
1205
+ Or the sum of all spanning tree weights of the graph `G`
1206
+ where the weight of a tree is the product of its edge weights.
1207
+ Directed graphs:
1208
+ The number of arborescences of `G` rooted at node `root`.
1209
+ Or the sum of all arborescence weights of the graph `G` with
1210
+ specified root where the weight of an arborescence is the product
1211
+ of its edge weights.
1212
+
1213
+ Raises
1214
+ ------
1215
+ NetworkXPointlessConcept
1216
+ If `G` does not contain any nodes.
1217
+
1218
+ NetworkXError
1219
+ If the graph `G` is directed and the root node
1220
+ is not specified or is not in G.
1221
+
1222
+ Examples
1223
+ --------
1224
+ >>> G = nx.complete_graph(5)
1225
+ >>> round(nx.number_of_spanning_trees(G))
1226
+ 125
1227
+
1228
+ >>> G = nx.Graph()
1229
+ >>> G.add_edge(1, 2, weight=2)
1230
+ >>> G.add_edge(1, 3, weight=1)
1231
+ >>> G.add_edge(2, 3, weight=1)
1232
+ >>> round(nx.number_of_spanning_trees(G, weight="weight"))
1233
+ 5
1234
+
1235
+ Notes
1236
+ -----
1237
+ Self-loops are excluded. Multi-edges are contracted in one edge
1238
+ equal to the sum of the weights.
1239
+
1240
+ References
1241
+ ----------
1242
+ .. [1] Wikipedia
1243
+ "Kirchhoff's theorem."
1244
+ https://en.wikipedia.org/wiki/Kirchhoff%27s_theorem
1245
+ .. [2] Kirchhoff, G. R.
1246
+ Über die Auflösung der Gleichungen, auf welche man
1247
+ bei der Untersuchung der linearen Vertheilung
1248
+ Galvanischer Ströme geführt wird
1249
+ Annalen der Physik und Chemie, vol. 72, pp. 497-508, 1847.
1250
+ .. [3] Margoliash, J.
1251
+ "Matrix-Tree Theorem for Directed Graphs"
1252
+ https://www.math.uchicago.edu/~may/VIGRE/VIGRE2010/REUPapers/Margoliash.pdf
1253
+ """
1254
+ import numpy as np
1255
+
1256
+ if len(G) == 0:
1257
+ raise nx.NetworkXPointlessConcept("Graph G must contain at least one node.")
1258
+
1259
+ # undirected G
1260
+ if not nx.is_directed(G):
1261
+ if not nx.is_connected(G):
1262
+ return 0
1263
+ G_laplacian = nx.laplacian_matrix(G, weight=weight).toarray()
1264
+ return float(np.linalg.det(G_laplacian[1:, 1:]))
1265
+
1266
+ # directed G
1267
+ if root is None:
1268
+ raise nx.NetworkXError("Input `root` must be provided when G is directed")
1269
+ if root not in G:
1270
+ raise nx.NetworkXError("The node root is not in the graph G.")
1271
+ if not nx.is_weakly_connected(G):
1272
+ return 0
1273
+
1274
+ # Compute directed Laplacian matrix
1275
+ nodelist = [root] + [n for n in G if n != root]
1276
+ A = nx.adjacency_matrix(G, nodelist=nodelist, weight=weight)
1277
+ D = np.diag(A.sum(axis=0))
1278
+ G_laplacian = D - A
1279
+
1280
+ # Compute number of spanning trees
1281
+ return float(np.linalg.det(G_laplacian[1:, 1:]))