okstra 0.107.2 → 0.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
- package/runtime/prompts/profiles/_common-contract.md +3 -2
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_ctl/session.py +44 -0
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_token_usage/claude.py +15 -9
- package/runtime/python/okstra_token_usage/cli.py +23 -0
- package/runtime/python/okstra_token_usage/collect.py +163 -4
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +178 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +611 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +356 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +662 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +425 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +300 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gl1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/gw1.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/netgen-2.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_gomory_hu.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow.py +573 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_maxflow_large_graph.py +155 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_mincost.py +475 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/test_networksimplex.py +481 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/tests/wlm3.gpickle.bz2 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +194 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +435 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +483 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +1306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +336 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +1262 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +352 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +308 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/iso_r01_s80.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.A99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/si2_b06_m200.B99 +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_ismags.py +719 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphism.py +103 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_isomorphvf2.py +490 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_match_helpers.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_temporalisomorphvf2.py +212 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_tree_isomorphism.py +202 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp.py +1655 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2pp_helpers.py +3118 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tests/test_vf2userfunc.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +1102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +2 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +337 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +498 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_hits.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/tests/test_pagerank.py +213 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +687 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +1148 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +27 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +738 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/minors/tests/test_contraction.py +544 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +219 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +155 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +324 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +468 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +633 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_all.py +328 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_binary.py +451 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_product.py +491 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/tests/test_unary.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +464 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +1463 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +98 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +239 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +716 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_astar.py +254 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense.py +212 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_dense_numpy.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_generic.py +511 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_unweighted.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/tests/test_weighted.py +983 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +625 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +2542 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +2107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +966 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +404 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +296 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +374 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +564 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +406 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_asteroidal.py +23 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_boundary.py +154 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_bridges.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_broadcasting.py +109 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chains.py +136 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_chordal.py +129 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_clique.py +300 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cluster.py +678 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_communicability.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_core.py +266 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_covering.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cuts.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_cycles.py +984 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_d_separation.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dag.py +835 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_measures.py +831 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_distance_regular.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominance.py +299 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_dominating.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_efficiency.py +58 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_euler.py +314 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graph_hashing.py +872 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_graphical.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hierarchy.py +46 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_hybrid.py +24 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_isolate.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_link_prediction.py +615 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_lowest_common_ancestors.py +459 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_matching.py +556 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_max_weight_clique.py +179 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_mis.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_moral.py +15 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_node_classification.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_non_randomness.py +60 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_perfect_graph.py +27 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planar_drawing.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_planarity.py +556 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_polynomials.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_reciprocity.py +37 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_regular.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_richclub.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_similarity.py +1158 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_simple_paths.py +803 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smallworld.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_smetric.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_sparsifiers.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_structuralholes.py +191 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_summarization.py +642 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_swap.py +179 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_threshold.py +270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_time_dependent.py +431 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_tournament.py +161 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_triads.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_vitality.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_voronoi.py +103 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_walks.py +54 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tests/test_wiener.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +981 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +406 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +90 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +576 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +529 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +185 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgedfs.py +182 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_beamsearch.py +25 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_bfs.py +203 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_dfs.py +307 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgebfs.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/traversal/tests/test_edgedfs.py +131 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/branchings.py +1042 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/coding.py +413 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/decomposition.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/distance_measures.py +219 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/mst.py +1281 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/operations.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/recognition.py +273 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_branchings.py +624 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_coding.py +114 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_decomposition.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_distance_measures.py +99 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_mst.py +934 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_operations.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/tree/tests/test_recognition.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/triads.py +500 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/vitality.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/voronoi.py +86 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/walks.py +77 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/wiener.py +278 -0
- package/runtime/python/okstra_vendor/networkx/classes/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/classes/coreviews.py +435 -0
- package/runtime/python/okstra_vendor/networkx/classes/digraph.py +1363 -0
- package/runtime/python/okstra_vendor/networkx/classes/filters.py +95 -0
- package/runtime/python/okstra_vendor/networkx/classes/function.py +1549 -0
- package/runtime/python/okstra_vendor/networkx/classes/graph.py +2082 -0
- package/runtime/python/okstra_vendor/networkx/classes/graphviews.py +269 -0
- package/runtime/python/okstra_vendor/networkx/classes/multidigraph.py +977 -0
- package/runtime/python/okstra_vendor/networkx/classes/multigraph.py +1294 -0
- package/runtime/python/okstra_vendor/networkx/classes/reportviews.py +1447 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/dispatch_interface.py +192 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/historical_tests.py +476 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_coreviews.py +362 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph.py +331 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_digraph_historical.py +110 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_filters.py +177 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_function.py +1045 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph.py +950 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graph_historical.py +12 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_graphviews.py +349 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multidigraph.py +459 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_multigraph.py +528 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_reportviews.py +1421 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_special.py +131 -0
- package/runtime/python/okstra_vendor/networkx/classes/tests/test_subgraphviews.py +371 -0
- package/runtime/python/okstra_vendor/networkx/conftest.py +261 -0
- package/runtime/python/okstra_vendor/networkx/convert.py +502 -0
- package/runtime/python/okstra_vendor/networkx/convert_matrix.py +1314 -0
- package/runtime/python/okstra_vendor/networkx/drawing/__init__.py +7 -0
- package/runtime/python/okstra_vendor/networkx/drawing/layout.py +2036 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_agraph.py +470 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_latex.py +570 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_pydot.py +361 -0
- package/runtime/python/okstra_vendor/networkx/drawing/nx_pylab.py +2978 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_complex.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_empty_graph.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_labels_and_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_display_shortest_path.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/baseline/test_house_with_colors.png +0 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_agraph.py +237 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_image_comparison_pylab_mpl.py +229 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_latex.py +285 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_layout.py +631 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pydot.py +146 -0
- package/runtime/python/okstra_vendor/networkx/drawing/tests/test_pylab.py +1582 -0
- package/runtime/python/okstra_vendor/networkx/exception.py +131 -0
- package/runtime/python/okstra_vendor/networkx/generators/__init__.py +34 -0
- package/runtime/python/okstra_vendor/networkx/generators/atlas.dat.gz +0 -0
- package/runtime/python/okstra_vendor/networkx/generators/atlas.py +227 -0
- package/runtime/python/okstra_vendor/networkx/generators/classic.py +1091 -0
- package/runtime/python/okstra_vendor/networkx/generators/cographs.py +68 -0
- package/runtime/python/okstra_vendor/networkx/generators/community.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/degree_seq.py +886 -0
- package/runtime/python/okstra_vendor/networkx/generators/directed.py +572 -0
- package/runtime/python/okstra_vendor/networkx/generators/duplication.py +174 -0
- package/runtime/python/okstra_vendor/networkx/generators/ego.py +66 -0
- package/runtime/python/okstra_vendor/networkx/generators/expanders.py +499 -0
- package/runtime/python/okstra_vendor/networkx/generators/geometric.py +1037 -0
- package/runtime/python/okstra_vendor/networkx/generators/harary_graph.py +163 -0
- package/runtime/python/okstra_vendor/networkx/generators/internet_as_graphs.py +443 -0
- package/runtime/python/okstra_vendor/networkx/generators/intersection.py +125 -0
- package/runtime/python/okstra_vendor/networkx/generators/interval_graph.py +70 -0
- package/runtime/python/okstra_vendor/networkx/generators/joint_degree_seq.py +664 -0
- package/runtime/python/okstra_vendor/networkx/generators/lattice.py +405 -0
- package/runtime/python/okstra_vendor/networkx/generators/line.py +501 -0
- package/runtime/python/okstra_vendor/networkx/generators/mycielski.py +110 -0
- package/runtime/python/okstra_vendor/networkx/generators/nonisomorphic_trees.py +259 -0
- package/runtime/python/okstra_vendor/networkx/generators/random_clustered.py +117 -0
- package/runtime/python/okstra_vendor/networkx/generators/random_graphs.py +1416 -0
- package/runtime/python/okstra_vendor/networkx/generators/small.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/social.py +554 -0
- package/runtime/python/okstra_vendor/networkx/generators/spectral_graph_forge.py +120 -0
- package/runtime/python/okstra_vendor/networkx/generators/stochastic.py +54 -0
- package/runtime/python/okstra_vendor/networkx/generators/sudoku.py +131 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_atlas.py +75 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_classic.py +642 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_cographs.py +20 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_community.py +362 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_degree_seq.py +224 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_directed.py +189 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_duplication.py +103 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_ego.py +39 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_expanders.py +182 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_geometric.py +488 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_harary_graph.py +133 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_internet_as_graphs.py +221 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_intersection.py +28 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_interval_graph.py +144 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_joint_degree_seq.py +125 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_lattice.py +264 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_line.py +316 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_mycielski.py +30 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_nonisomorphic_trees.py +82 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_clustered.py +33 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_graphs.py +495 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_small.py +220 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_spectral_graph_forge.py +49 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_stochastic.py +72 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_sudoku.py +92 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_time_series.py +64 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_trees.py +195 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_triads.py +15 -0
- package/runtime/python/okstra_vendor/networkx/generators/time_series.py +74 -0
- package/runtime/python/okstra_vendor/networkx/generators/trees.py +1070 -0
- package/runtime/python/okstra_vendor/networkx/generators/triads.py +94 -0
- package/runtime/python/okstra_vendor/networkx/lazy_imports.py +188 -0
- package/runtime/python/okstra_vendor/networkx/linalg/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/linalg/algebraicconnectivity.py +650 -0
- package/runtime/python/okstra_vendor/networkx/linalg/attrmatrix.py +466 -0
- package/runtime/python/okstra_vendor/networkx/linalg/bethehessianmatrix.py +77 -0
- package/runtime/python/okstra_vendor/networkx/linalg/graphmatrix.py +168 -0
- package/runtime/python/okstra_vendor/networkx/linalg/laplacianmatrix.py +512 -0
- package/runtime/python/okstra_vendor/networkx/linalg/modularitymatrix.py +166 -0
- package/runtime/python/okstra_vendor/networkx/linalg/spectrum.py +186 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py +400 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py +108 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py +40 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_graphmatrix.py +275 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_laplacian.py +334 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_modularity.py +86 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_spectrum.py +70 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/__init__.py +17 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/adjlist.py +330 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py +489 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gexf.py +1084 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gml.py +879 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graph6.py +427 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/graphml.py +1053 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/__init__.py +19 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/adjacency.py +156 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/cytoscape.py +190 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/node_link.py +261 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_adjacency.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_cytoscape.py +78 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_node_link.py +109 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_tree.py +48 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tree.py +137 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/leda.py +108 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/multiline_adjlist.py +393 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/p2g.py +113 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/pajek.py +286 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/sparse6.py +379 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_adjlist.py +354 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_edgelist.py +318 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gexf.py +612 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_gml.py +744 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graph6.py +181 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_graphml.py +1531 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_leda.py +30 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_p2g.py +63 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_pajek.py +128 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_sparse6.py +166 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/tests/test_text.py +1742 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/text.py +851 -0
- package/runtime/python/okstra_vendor/networkx/relabel.py +285 -0
- package/runtime/python/okstra_vendor/networkx/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_all_random_functions.py +248 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert.py +321 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_numpy.py +531 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_pandas.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_convert_scipy.py +281 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_exceptions.py +40 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_import.py +11 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_lazy_imports.py +96 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_relabel.py +349 -0
- package/runtime/python/okstra_vendor/networkx/tests/test_removed_functions_exception_messages.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/__init__.py +8 -0
- package/runtime/python/okstra_vendor/networkx/utils/backends.py +2171 -0
- package/runtime/python/okstra_vendor/networkx/utils/configs.py +396 -0
- package/runtime/python/okstra_vendor/networkx/utils/decorators.py +1233 -0
- package/runtime/python/okstra_vendor/networkx/utils/heaps.py +338 -0
- package/runtime/python/okstra_vendor/networkx/utils/mapped_queue.py +297 -0
- package/runtime/python/okstra_vendor/networkx/utils/misc.py +703 -0
- package/runtime/python/okstra_vendor/networkx/utils/random_sequence.py +198 -0
- package/runtime/python/okstra_vendor/networkx/utils/rcm.py +159 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test__init.py +11 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_backends.py +225 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_config.py +263 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_decorators.py +510 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_heaps.py +131 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_mapped_queue.py +268 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_misc.py +393 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_random_sequence.py +53 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_rcm.py +63 -0
- package/runtime/python/okstra_vendor/networkx/utils/tests/test_unionfind.py +55 -0
- package/runtime/python/okstra_vendor/networkx/utils/union_find.py +106 -0
- package/runtime/skills/okstra-graphify/SKILL.md +161 -0
- package/runtime/skills/okstra-inspect/SKILL.md +17 -9
- package/runtime/templates/reports/settings.template.json +4 -0
- package/runtime/validators/forbidden_actions.py +8 -2
- package/runtime/validators/validate_session_conformance.py +26 -5
- package/src/cli-registry.mjs +7 -0
- package/src/commands/graphify.mjs +32 -0
- package/src/commands/lifecycle/doctor.mjs +9 -0
- package/src/lib/skill-catalog.mjs +1 -0
|
@@ -0,0 +1,879 @@
|
|
|
1
|
+
"""
|
|
2
|
+
Read graphs in GML format.
|
|
3
|
+
|
|
4
|
+
"GML, the Graph Modelling Language, is our proposal for a portable
|
|
5
|
+
file format for graphs. GML's key features are portability, simple
|
|
6
|
+
syntax, extensibility and flexibility. A GML file consists of a
|
|
7
|
+
hierarchical key-value lists. Graphs can be annotated with arbitrary
|
|
8
|
+
data structures. The idea for a common file format was born at the
|
|
9
|
+
GD'95; this proposal is the outcome of many discussions. GML is the
|
|
10
|
+
standard file format in the Graphlet graph editor system. It has been
|
|
11
|
+
overtaken and adapted by several other systems for drawing graphs."
|
|
12
|
+
|
|
13
|
+
GML files are stored using a 7-bit ASCII encoding with any extended
|
|
14
|
+
ASCII characters (iso8859-1) appearing as HTML character entities.
|
|
15
|
+
You will need to give some thought into how the exported data should
|
|
16
|
+
interact with different languages and even different Python versions.
|
|
17
|
+
Re-importing from gml is also a concern.
|
|
18
|
+
|
|
19
|
+
Without specifying a `stringizer`/`destringizer`, the code is capable of
|
|
20
|
+
writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
|
|
21
|
+
specification. For writing other data types, and for reading data other
|
|
22
|
+
than `str` you need to explicitly supply a `stringizer`/`destringizer`.
|
|
23
|
+
|
|
24
|
+
For additional documentation on the GML file format, please see the
|
|
25
|
+
`GML website <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
|
|
26
|
+
|
|
27
|
+
Several example graphs in GML format may be found on Mark Newman's
|
|
28
|
+
`Network data page <http://www-personal.umich.edu/~mejn/netdata/>`_.
|
|
29
|
+
"""
|
|
30
|
+
|
|
31
|
+
import html.entities as htmlentitydefs
|
|
32
|
+
import re
|
|
33
|
+
from ast import literal_eval
|
|
34
|
+
from collections import defaultdict
|
|
35
|
+
from enum import Enum
|
|
36
|
+
from io import StringIO
|
|
37
|
+
from typing import Any, NamedTuple
|
|
38
|
+
|
|
39
|
+
import networkx as nx
|
|
40
|
+
from networkx.exception import NetworkXError
|
|
41
|
+
from networkx.utils import open_file
|
|
42
|
+
|
|
43
|
+
__all__ = ["read_gml", "parse_gml", "generate_gml", "write_gml"]
|
|
44
|
+
|
|
45
|
+
|
|
46
|
+
def escape(text):
|
|
47
|
+
"""Use XML character references to escape characters.
|
|
48
|
+
|
|
49
|
+
Use XML character references for unprintable or non-ASCII
|
|
50
|
+
characters, double quotes and ampersands in a string
|
|
51
|
+
"""
|
|
52
|
+
|
|
53
|
+
def fixup(m):
|
|
54
|
+
ch = m.group(0)
|
|
55
|
+
return "&#" + str(ord(ch)) + ";"
|
|
56
|
+
|
|
57
|
+
text = re.sub('[^ -~]|[&"]', fixup, text)
|
|
58
|
+
return text if isinstance(text, str) else str(text)
|
|
59
|
+
|
|
60
|
+
|
|
61
|
+
def unescape(text):
|
|
62
|
+
"""Replace XML character references with the referenced characters"""
|
|
63
|
+
|
|
64
|
+
def fixup(m):
|
|
65
|
+
text = m.group(0)
|
|
66
|
+
if text[1] == "#":
|
|
67
|
+
# Character reference
|
|
68
|
+
if text[2] == "x":
|
|
69
|
+
code = int(text[3:-1], 16)
|
|
70
|
+
else:
|
|
71
|
+
code = int(text[2:-1])
|
|
72
|
+
else:
|
|
73
|
+
# Named entity
|
|
74
|
+
try:
|
|
75
|
+
code = htmlentitydefs.name2codepoint[text[1:-1]]
|
|
76
|
+
except KeyError:
|
|
77
|
+
return text # leave unchanged
|
|
78
|
+
try:
|
|
79
|
+
return chr(code)
|
|
80
|
+
except (ValueError, OverflowError):
|
|
81
|
+
return text # leave unchanged
|
|
82
|
+
|
|
83
|
+
return re.sub("&(?:[0-9A-Za-z]+|#(?:[0-9]+|x[0-9A-Fa-f]+));", fixup, text)
|
|
84
|
+
|
|
85
|
+
|
|
86
|
+
def literal_destringizer(rep):
|
|
87
|
+
"""Convert a Python literal to the value it represents.
|
|
88
|
+
|
|
89
|
+
Parameters
|
|
90
|
+
----------
|
|
91
|
+
rep : string
|
|
92
|
+
A Python literal.
|
|
93
|
+
|
|
94
|
+
Returns
|
|
95
|
+
-------
|
|
96
|
+
value : object
|
|
97
|
+
The value of the Python literal.
|
|
98
|
+
|
|
99
|
+
Raises
|
|
100
|
+
------
|
|
101
|
+
ValueError
|
|
102
|
+
If `rep` is not a Python literal.
|
|
103
|
+
"""
|
|
104
|
+
if isinstance(rep, str):
|
|
105
|
+
orig_rep = rep
|
|
106
|
+
try:
|
|
107
|
+
return literal_eval(rep)
|
|
108
|
+
except SyntaxError as err:
|
|
109
|
+
raise ValueError(f"{orig_rep!r} is not a valid Python literal") from err
|
|
110
|
+
else:
|
|
111
|
+
raise ValueError(f"{rep!r} is not a string")
|
|
112
|
+
|
|
113
|
+
|
|
114
|
+
@open_file(0, mode="rb")
|
|
115
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
116
|
+
def read_gml(path, label="label", destringizer=None):
|
|
117
|
+
"""Read graph in GML format from `path`.
|
|
118
|
+
|
|
119
|
+
Parameters
|
|
120
|
+
----------
|
|
121
|
+
path : file or string
|
|
122
|
+
Filename or file handle to read.
|
|
123
|
+
Filenames ending in .gz or .bz2 will be decompressed.
|
|
124
|
+
|
|
125
|
+
label : string, optional
|
|
126
|
+
If not None, the parsed nodes will be renamed according to node
|
|
127
|
+
attributes indicated by `label`. Default value: 'label'.
|
|
128
|
+
|
|
129
|
+
destringizer : callable, optional
|
|
130
|
+
A `destringizer` that recovers values stored as strings in GML. If it
|
|
131
|
+
cannot convert a string to a value, a `ValueError` is raised. Default
|
|
132
|
+
value : None.
|
|
133
|
+
|
|
134
|
+
Returns
|
|
135
|
+
-------
|
|
136
|
+
G : NetworkX graph
|
|
137
|
+
The parsed graph.
|
|
138
|
+
|
|
139
|
+
Raises
|
|
140
|
+
------
|
|
141
|
+
NetworkXError
|
|
142
|
+
If the input cannot be parsed.
|
|
143
|
+
|
|
144
|
+
See Also
|
|
145
|
+
--------
|
|
146
|
+
write_gml, parse_gml
|
|
147
|
+
literal_destringizer
|
|
148
|
+
|
|
149
|
+
Notes
|
|
150
|
+
-----
|
|
151
|
+
GML files are stored using a 7-bit ASCII encoding with any extended
|
|
152
|
+
ASCII characters (iso8859-1) appearing as HTML character entities.
|
|
153
|
+
Without specifying a `stringizer`/`destringizer`, the code is capable of
|
|
154
|
+
writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
|
|
155
|
+
specification. For writing other data types, and for reading data other
|
|
156
|
+
than `str` you need to explicitly supply a `stringizer`/`destringizer`.
|
|
157
|
+
|
|
158
|
+
For additional documentation on the GML file format, please see the
|
|
159
|
+
`GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
|
|
160
|
+
|
|
161
|
+
See the module docstring :mod:`networkx.readwrite.gml` for more details.
|
|
162
|
+
|
|
163
|
+
Examples
|
|
164
|
+
--------
|
|
165
|
+
>>> G = nx.path_graph(4)
|
|
166
|
+
>>> nx.write_gml(G, "test_path4.gml")
|
|
167
|
+
|
|
168
|
+
GML values are interpreted as strings by default:
|
|
169
|
+
|
|
170
|
+
>>> H = nx.read_gml("test_path4.gml")
|
|
171
|
+
>>> H.nodes
|
|
172
|
+
NodeView(('0', '1', '2', '3'))
|
|
173
|
+
|
|
174
|
+
When a `destringizer` is provided, GML values are converted to the provided type.
|
|
175
|
+
For example, integer nodes can be recovered as shown below:
|
|
176
|
+
|
|
177
|
+
>>> J = nx.read_gml("test_path4.gml", destringizer=int)
|
|
178
|
+
>>> J.nodes
|
|
179
|
+
NodeView((0, 1, 2, 3))
|
|
180
|
+
|
|
181
|
+
"""
|
|
182
|
+
|
|
183
|
+
def filter_lines(lines):
|
|
184
|
+
for line in lines:
|
|
185
|
+
try:
|
|
186
|
+
line = line.decode("ascii")
|
|
187
|
+
except UnicodeDecodeError as err:
|
|
188
|
+
raise NetworkXError("input is not ASCII-encoded") from err
|
|
189
|
+
if not isinstance(line, str):
|
|
190
|
+
lines = str(lines)
|
|
191
|
+
if line and line[-1] == "\n":
|
|
192
|
+
line = line[:-1]
|
|
193
|
+
yield line
|
|
194
|
+
|
|
195
|
+
G = parse_gml_lines(filter_lines(path), label, destringizer)
|
|
196
|
+
return G
|
|
197
|
+
|
|
198
|
+
|
|
199
|
+
@nx._dispatchable(graphs=None, returns_graph=True)
|
|
200
|
+
def parse_gml(lines, label="label", destringizer=None):
|
|
201
|
+
"""Parse GML graph from a string or iterable.
|
|
202
|
+
|
|
203
|
+
Parameters
|
|
204
|
+
----------
|
|
205
|
+
lines : string or iterable of strings
|
|
206
|
+
Data in GML format.
|
|
207
|
+
|
|
208
|
+
label : string, optional
|
|
209
|
+
If not None, the parsed nodes will be renamed according to node
|
|
210
|
+
attributes indicated by `label`. Default value: 'label'.
|
|
211
|
+
|
|
212
|
+
destringizer : callable, optional
|
|
213
|
+
A `destringizer` that recovers values stored as strings in GML. If it
|
|
214
|
+
cannot convert a string to a value, a `ValueError` is raised. Default
|
|
215
|
+
value : None.
|
|
216
|
+
|
|
217
|
+
Returns
|
|
218
|
+
-------
|
|
219
|
+
G : NetworkX graph
|
|
220
|
+
The parsed graph.
|
|
221
|
+
|
|
222
|
+
Raises
|
|
223
|
+
------
|
|
224
|
+
NetworkXError
|
|
225
|
+
If the input cannot be parsed.
|
|
226
|
+
|
|
227
|
+
See Also
|
|
228
|
+
--------
|
|
229
|
+
write_gml, read_gml
|
|
230
|
+
|
|
231
|
+
Notes
|
|
232
|
+
-----
|
|
233
|
+
This stores nested GML attributes as dictionaries in the NetworkX graph,
|
|
234
|
+
node, and edge attribute structures.
|
|
235
|
+
|
|
236
|
+
GML files are stored using a 7-bit ASCII encoding with any extended
|
|
237
|
+
ASCII characters (iso8859-1) appearing as HTML character entities.
|
|
238
|
+
Without specifying a `stringizer`/`destringizer`, the code is capable of
|
|
239
|
+
writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
|
|
240
|
+
specification. For writing other data types, and for reading data other
|
|
241
|
+
than `str` you need to explicitly supply a `stringizer`/`destringizer`.
|
|
242
|
+
|
|
243
|
+
For additional documentation on the GML file format, please see the
|
|
244
|
+
`GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
|
|
245
|
+
|
|
246
|
+
See the module docstring :mod:`networkx.readwrite.gml` for more details.
|
|
247
|
+
"""
|
|
248
|
+
|
|
249
|
+
def decode_line(line):
|
|
250
|
+
if isinstance(line, bytes):
|
|
251
|
+
try:
|
|
252
|
+
line.decode("ascii")
|
|
253
|
+
except UnicodeDecodeError as err:
|
|
254
|
+
raise NetworkXError("input is not ASCII-encoded") from err
|
|
255
|
+
if not isinstance(line, str):
|
|
256
|
+
line = str(line)
|
|
257
|
+
return line
|
|
258
|
+
|
|
259
|
+
def filter_lines(lines):
|
|
260
|
+
if isinstance(lines, str):
|
|
261
|
+
lines = decode_line(lines)
|
|
262
|
+
lines = lines.splitlines()
|
|
263
|
+
yield from lines
|
|
264
|
+
else:
|
|
265
|
+
for line in lines:
|
|
266
|
+
line = decode_line(line)
|
|
267
|
+
if line and line[-1] == "\n":
|
|
268
|
+
line = line[:-1]
|
|
269
|
+
if line.find("\n") != -1:
|
|
270
|
+
raise NetworkXError("input line contains newline")
|
|
271
|
+
yield line
|
|
272
|
+
|
|
273
|
+
G = parse_gml_lines(filter_lines(lines), label, destringizer)
|
|
274
|
+
return G
|
|
275
|
+
|
|
276
|
+
|
|
277
|
+
class Pattern(Enum):
|
|
278
|
+
"""encodes the index of each token-matching pattern in `tokenize`."""
|
|
279
|
+
|
|
280
|
+
KEYS = 0
|
|
281
|
+
REALS = 1
|
|
282
|
+
INTS = 2
|
|
283
|
+
STRINGS = 3
|
|
284
|
+
DICT_START = 4
|
|
285
|
+
DICT_END = 5
|
|
286
|
+
COMMENT_WHITESPACE = 6
|
|
287
|
+
|
|
288
|
+
|
|
289
|
+
class Token(NamedTuple):
|
|
290
|
+
category: Pattern
|
|
291
|
+
value: Any
|
|
292
|
+
line: int
|
|
293
|
+
position: int
|
|
294
|
+
|
|
295
|
+
|
|
296
|
+
LIST_START_VALUE = "_networkx_list_start"
|
|
297
|
+
|
|
298
|
+
|
|
299
|
+
def parse_gml_lines(lines, label, destringizer):
|
|
300
|
+
"""Parse GML `lines` into a graph."""
|
|
301
|
+
|
|
302
|
+
def tokenize():
|
|
303
|
+
patterns = [
|
|
304
|
+
r"[A-Za-z][0-9A-Za-z_]*\b", # keys
|
|
305
|
+
# reals
|
|
306
|
+
r"[+-]?(?:[0-9]*\.[0-9]+|[0-9]+\.[0-9]*|INF)(?:[Ee][+-]?[0-9]+)?",
|
|
307
|
+
r"[+-]?[0-9]+", # ints
|
|
308
|
+
r'".*?"', # strings
|
|
309
|
+
r"\[", # dict start
|
|
310
|
+
r"\]", # dict end
|
|
311
|
+
r"#.*$|\s+", # comments and whitespaces
|
|
312
|
+
]
|
|
313
|
+
tokens = re.compile("|".join(f"({pattern})" for pattern in patterns))
|
|
314
|
+
lineno = 0
|
|
315
|
+
multilines = [] # entries spread across multiple lines
|
|
316
|
+
for line in lines:
|
|
317
|
+
pos = 0
|
|
318
|
+
|
|
319
|
+
# deal with entries spread across multiple lines
|
|
320
|
+
#
|
|
321
|
+
# should we actually have to deal with escaped "s then do it here
|
|
322
|
+
if multilines:
|
|
323
|
+
multilines.append(line.strip())
|
|
324
|
+
if line[-1] == '"': # closing multiline entry
|
|
325
|
+
# multiline entries will be joined by space. cannot
|
|
326
|
+
# reintroduce newlines as this will break the tokenizer
|
|
327
|
+
line = " ".join(multilines)
|
|
328
|
+
multilines = []
|
|
329
|
+
else: # continued multiline entry
|
|
330
|
+
lineno += 1
|
|
331
|
+
continue
|
|
332
|
+
else:
|
|
333
|
+
if line.count('"') == 1: # opening multiline entry
|
|
334
|
+
if line.strip()[0] != '"' and line.strip()[-1] != '"':
|
|
335
|
+
# since we expect something like key "value", the " should not be found at ends
|
|
336
|
+
# otherwise tokenizer will pick up the formatting mistake.
|
|
337
|
+
multilines = [line.rstrip()]
|
|
338
|
+
lineno += 1
|
|
339
|
+
continue
|
|
340
|
+
|
|
341
|
+
length = len(line)
|
|
342
|
+
|
|
343
|
+
while pos < length:
|
|
344
|
+
match = tokens.match(line, pos)
|
|
345
|
+
if match is None:
|
|
346
|
+
m = f"cannot tokenize {line[pos:]} at ({lineno + 1}, {pos + 1})"
|
|
347
|
+
raise NetworkXError(m)
|
|
348
|
+
for i in range(len(patterns)):
|
|
349
|
+
group = match.group(i + 1)
|
|
350
|
+
if group is not None:
|
|
351
|
+
if i == 0: # keys
|
|
352
|
+
value = group.rstrip()
|
|
353
|
+
elif i == 1: # reals
|
|
354
|
+
value = float(group)
|
|
355
|
+
elif i == 2: # ints
|
|
356
|
+
value = int(group)
|
|
357
|
+
else:
|
|
358
|
+
value = group
|
|
359
|
+
if i != 6: # comments and whitespaces
|
|
360
|
+
yield Token(Pattern(i), value, lineno + 1, pos + 1)
|
|
361
|
+
pos += len(group)
|
|
362
|
+
break
|
|
363
|
+
lineno += 1
|
|
364
|
+
yield Token(None, None, lineno + 1, 1) # EOF
|
|
365
|
+
|
|
366
|
+
def unexpected(curr_token, expected):
|
|
367
|
+
category, value, lineno, pos = curr_token
|
|
368
|
+
value = repr(value) if value is not None else "EOF"
|
|
369
|
+
raise NetworkXError(f"expected {expected}, found {value} at ({lineno}, {pos})")
|
|
370
|
+
|
|
371
|
+
def consume(curr_token, category, expected):
|
|
372
|
+
if curr_token.category == category:
|
|
373
|
+
return next(tokens)
|
|
374
|
+
unexpected(curr_token, expected)
|
|
375
|
+
|
|
376
|
+
def parse_kv(curr_token):
|
|
377
|
+
dct = defaultdict(list)
|
|
378
|
+
while curr_token.category == Pattern.KEYS:
|
|
379
|
+
key = curr_token.value
|
|
380
|
+
curr_token = next(tokens)
|
|
381
|
+
category = curr_token.category
|
|
382
|
+
if category == Pattern.REALS or category == Pattern.INTS:
|
|
383
|
+
value = curr_token.value
|
|
384
|
+
curr_token = next(tokens)
|
|
385
|
+
elif category == Pattern.STRINGS:
|
|
386
|
+
value = unescape(curr_token.value[1:-1])
|
|
387
|
+
if destringizer:
|
|
388
|
+
try:
|
|
389
|
+
value = destringizer(value)
|
|
390
|
+
except ValueError:
|
|
391
|
+
pass
|
|
392
|
+
# Special handling for empty lists and tuples
|
|
393
|
+
if value == "()":
|
|
394
|
+
value = ()
|
|
395
|
+
if value == "[]":
|
|
396
|
+
value = []
|
|
397
|
+
curr_token = next(tokens)
|
|
398
|
+
elif category == Pattern.DICT_START:
|
|
399
|
+
curr_token, value = parse_dict(curr_token)
|
|
400
|
+
else:
|
|
401
|
+
# Allow for string convertible id and label values
|
|
402
|
+
if key in ("id", "label", "source", "target"):
|
|
403
|
+
try:
|
|
404
|
+
# String convert the token value
|
|
405
|
+
value = unescape(str(curr_token.value))
|
|
406
|
+
if destringizer:
|
|
407
|
+
try:
|
|
408
|
+
value = destringizer(value)
|
|
409
|
+
except ValueError:
|
|
410
|
+
pass
|
|
411
|
+
curr_token = next(tokens)
|
|
412
|
+
except Exception:
|
|
413
|
+
msg = (
|
|
414
|
+
"an int, float, string, '[' or string"
|
|
415
|
+
+ " convertible ASCII value for node id or label"
|
|
416
|
+
)
|
|
417
|
+
unexpected(curr_token, msg)
|
|
418
|
+
# Special handling for nan and infinity. Since the gml language
|
|
419
|
+
# defines unquoted strings as keys, the numeric and string branches
|
|
420
|
+
# are skipped and we end up in this special branch, so we need to
|
|
421
|
+
# convert the current token value to a float for NAN and plain INF.
|
|
422
|
+
# +/-INF are handled in the pattern for 'reals' in tokenize(). This
|
|
423
|
+
# allows labels and values to be nan or infinity, but not keys.
|
|
424
|
+
elif curr_token.value in {"NAN", "INF"}:
|
|
425
|
+
value = float(curr_token.value)
|
|
426
|
+
curr_token = next(tokens)
|
|
427
|
+
else: # Otherwise error out
|
|
428
|
+
unexpected(curr_token, "an int, float, string or '['")
|
|
429
|
+
dct[key].append(value)
|
|
430
|
+
|
|
431
|
+
def clean_dict_value(value):
|
|
432
|
+
if not isinstance(value, list):
|
|
433
|
+
return value
|
|
434
|
+
if len(value) == 1:
|
|
435
|
+
return value[0]
|
|
436
|
+
if value[0] == LIST_START_VALUE:
|
|
437
|
+
return value[1:]
|
|
438
|
+
return value
|
|
439
|
+
|
|
440
|
+
dct = {key: clean_dict_value(value) for key, value in dct.items()}
|
|
441
|
+
return curr_token, dct
|
|
442
|
+
|
|
443
|
+
def parse_dict(curr_token):
|
|
444
|
+
# dict start
|
|
445
|
+
curr_token = consume(curr_token, Pattern.DICT_START, "'['")
|
|
446
|
+
# dict contents
|
|
447
|
+
curr_token, dct = parse_kv(curr_token)
|
|
448
|
+
# dict end
|
|
449
|
+
curr_token = consume(curr_token, Pattern.DICT_END, "']'")
|
|
450
|
+
return curr_token, dct
|
|
451
|
+
|
|
452
|
+
def parse_graph():
|
|
453
|
+
curr_token, dct = parse_kv(next(tokens))
|
|
454
|
+
if curr_token.category is not None: # EOF
|
|
455
|
+
unexpected(curr_token, "EOF")
|
|
456
|
+
if "graph" not in dct:
|
|
457
|
+
raise NetworkXError("input contains no graph")
|
|
458
|
+
graph = dct["graph"]
|
|
459
|
+
if isinstance(graph, list):
|
|
460
|
+
raise NetworkXError("input contains more than one graph")
|
|
461
|
+
return graph
|
|
462
|
+
|
|
463
|
+
tokens = tokenize()
|
|
464
|
+
graph = parse_graph()
|
|
465
|
+
|
|
466
|
+
directed = graph.pop("directed", False)
|
|
467
|
+
multigraph = graph.pop("multigraph", False)
|
|
468
|
+
if not multigraph:
|
|
469
|
+
G = nx.DiGraph() if directed else nx.Graph()
|
|
470
|
+
else:
|
|
471
|
+
G = nx.MultiDiGraph() if directed else nx.MultiGraph()
|
|
472
|
+
graph_attr = {k: v for k, v in graph.items() if k not in ("node", "edge")}
|
|
473
|
+
G.graph.update(graph_attr)
|
|
474
|
+
|
|
475
|
+
def pop_attr(dct, category, attr, i):
|
|
476
|
+
try:
|
|
477
|
+
return dct.pop(attr)
|
|
478
|
+
except KeyError as err:
|
|
479
|
+
raise NetworkXError(f"{category} #{i} has no {attr!r} attribute") from err
|
|
480
|
+
|
|
481
|
+
nodes = graph.get("node", [])
|
|
482
|
+
mapping = {}
|
|
483
|
+
node_labels = set()
|
|
484
|
+
for i, node in enumerate(nodes if isinstance(nodes, list) else [nodes]):
|
|
485
|
+
id = pop_attr(node, "node", "id", i)
|
|
486
|
+
if id in G:
|
|
487
|
+
raise NetworkXError(f"node id {id!r} is duplicated")
|
|
488
|
+
if label is not None and label != "id":
|
|
489
|
+
node_label = pop_attr(node, "node", label, i)
|
|
490
|
+
if node_label in node_labels:
|
|
491
|
+
raise NetworkXError(f"node label {node_label!r} is duplicated")
|
|
492
|
+
node_labels.add(node_label)
|
|
493
|
+
mapping[id] = node_label
|
|
494
|
+
G.add_node(id, **node)
|
|
495
|
+
|
|
496
|
+
edges = graph.get("edge", [])
|
|
497
|
+
for i, edge in enumerate(edges if isinstance(edges, list) else [edges]):
|
|
498
|
+
source = pop_attr(edge, "edge", "source", i)
|
|
499
|
+
target = pop_attr(edge, "edge", "target", i)
|
|
500
|
+
if source not in G:
|
|
501
|
+
raise NetworkXError(f"edge #{i} has undefined source {source!r}")
|
|
502
|
+
if target not in G:
|
|
503
|
+
raise NetworkXError(f"edge #{i} has undefined target {target!r}")
|
|
504
|
+
if not multigraph:
|
|
505
|
+
if not G.has_edge(source, target):
|
|
506
|
+
G.add_edge(source, target, **edge)
|
|
507
|
+
else:
|
|
508
|
+
arrow = "->" if directed else "--"
|
|
509
|
+
msg = f"edge #{i} ({source!r}{arrow}{target!r}) is duplicated"
|
|
510
|
+
raise nx.NetworkXError(msg)
|
|
511
|
+
else:
|
|
512
|
+
key = edge.pop("key", None)
|
|
513
|
+
if key is not None and G.has_edge(source, target, key):
|
|
514
|
+
arrow = "->" if directed else "--"
|
|
515
|
+
msg = f"edge #{i} ({source!r}{arrow}{target!r}, {key!r})"
|
|
516
|
+
msg2 = 'Hint: If multigraph add "multigraph 1" to file header.'
|
|
517
|
+
raise nx.NetworkXError(msg + " is duplicated\n" + msg2)
|
|
518
|
+
G.add_edge(source, target, key, **edge)
|
|
519
|
+
|
|
520
|
+
if label is not None and label != "id":
|
|
521
|
+
G = nx.relabel_nodes(G, mapping)
|
|
522
|
+
return G
|
|
523
|
+
|
|
524
|
+
|
|
525
|
+
def literal_stringizer(value):
|
|
526
|
+
"""Convert a `value` to a Python literal in GML representation.
|
|
527
|
+
|
|
528
|
+
Parameters
|
|
529
|
+
----------
|
|
530
|
+
value : object
|
|
531
|
+
The `value` to be converted to GML representation.
|
|
532
|
+
|
|
533
|
+
Returns
|
|
534
|
+
-------
|
|
535
|
+
rep : string
|
|
536
|
+
A double-quoted Python literal representing value. Unprintable
|
|
537
|
+
characters are replaced by XML character references.
|
|
538
|
+
|
|
539
|
+
Raises
|
|
540
|
+
------
|
|
541
|
+
ValueError
|
|
542
|
+
If `value` cannot be converted to GML.
|
|
543
|
+
|
|
544
|
+
Notes
|
|
545
|
+
-----
|
|
546
|
+
The original value can be recovered using the
|
|
547
|
+
:func:`networkx.readwrite.gml.literal_destringizer` function.
|
|
548
|
+
"""
|
|
549
|
+
|
|
550
|
+
def stringize(value):
|
|
551
|
+
if isinstance(value, int | bool) or value is None:
|
|
552
|
+
if value is True: # GML uses 1/0 for boolean values.
|
|
553
|
+
buf.write(str(1))
|
|
554
|
+
elif value is False:
|
|
555
|
+
buf.write(str(0))
|
|
556
|
+
else:
|
|
557
|
+
buf.write(str(value))
|
|
558
|
+
elif isinstance(value, str):
|
|
559
|
+
text = repr(value)
|
|
560
|
+
if text[0] != "u":
|
|
561
|
+
try:
|
|
562
|
+
value.encode("latin1")
|
|
563
|
+
except UnicodeEncodeError:
|
|
564
|
+
text = "u" + text
|
|
565
|
+
buf.write(text)
|
|
566
|
+
elif isinstance(value, float | complex | str | bytes):
|
|
567
|
+
buf.write(repr(value))
|
|
568
|
+
elif isinstance(value, list):
|
|
569
|
+
buf.write("[")
|
|
570
|
+
first = True
|
|
571
|
+
for item in value:
|
|
572
|
+
if not first:
|
|
573
|
+
buf.write(",")
|
|
574
|
+
else:
|
|
575
|
+
first = False
|
|
576
|
+
stringize(item)
|
|
577
|
+
buf.write("]")
|
|
578
|
+
elif isinstance(value, tuple):
|
|
579
|
+
if len(value) > 1:
|
|
580
|
+
buf.write("(")
|
|
581
|
+
first = True
|
|
582
|
+
for item in value:
|
|
583
|
+
if not first:
|
|
584
|
+
buf.write(",")
|
|
585
|
+
else:
|
|
586
|
+
first = False
|
|
587
|
+
stringize(item)
|
|
588
|
+
buf.write(")")
|
|
589
|
+
elif value:
|
|
590
|
+
buf.write("(")
|
|
591
|
+
stringize(value[0])
|
|
592
|
+
buf.write(",)")
|
|
593
|
+
else:
|
|
594
|
+
buf.write("()")
|
|
595
|
+
elif isinstance(value, dict):
|
|
596
|
+
buf.write("{")
|
|
597
|
+
first = True
|
|
598
|
+
for key, value in value.items():
|
|
599
|
+
if not first:
|
|
600
|
+
buf.write(",")
|
|
601
|
+
else:
|
|
602
|
+
first = False
|
|
603
|
+
stringize(key)
|
|
604
|
+
buf.write(":")
|
|
605
|
+
stringize(value)
|
|
606
|
+
buf.write("}")
|
|
607
|
+
elif isinstance(value, set):
|
|
608
|
+
buf.write("{")
|
|
609
|
+
first = True
|
|
610
|
+
for item in value:
|
|
611
|
+
if not first:
|
|
612
|
+
buf.write(",")
|
|
613
|
+
else:
|
|
614
|
+
first = False
|
|
615
|
+
stringize(item)
|
|
616
|
+
buf.write("}")
|
|
617
|
+
else:
|
|
618
|
+
msg = f"{value!r} cannot be converted into a Python literal"
|
|
619
|
+
raise ValueError(msg)
|
|
620
|
+
|
|
621
|
+
buf = StringIO()
|
|
622
|
+
stringize(value)
|
|
623
|
+
return buf.getvalue()
|
|
624
|
+
|
|
625
|
+
|
|
626
|
+
def generate_gml(G, stringizer=None):
|
|
627
|
+
r"""Generate a single entry of the graph `G` in GML format.
|
|
628
|
+
|
|
629
|
+
Parameters
|
|
630
|
+
----------
|
|
631
|
+
G : NetworkX graph
|
|
632
|
+
The graph to be converted to GML.
|
|
633
|
+
|
|
634
|
+
stringizer : callable, optional
|
|
635
|
+
A `stringizer` which converts non-int/non-float/non-dict values into
|
|
636
|
+
strings. If it cannot convert a value into a string, it should raise a
|
|
637
|
+
`ValueError` to indicate that. Default value: None.
|
|
638
|
+
|
|
639
|
+
Returns
|
|
640
|
+
-------
|
|
641
|
+
lines: generator of strings
|
|
642
|
+
Lines of GML data. Newlines are not appended.
|
|
643
|
+
|
|
644
|
+
Raises
|
|
645
|
+
------
|
|
646
|
+
NetworkXError
|
|
647
|
+
If `stringizer` cannot convert a value into a string, or the value to
|
|
648
|
+
convert is not a string while `stringizer` is None.
|
|
649
|
+
|
|
650
|
+
See Also
|
|
651
|
+
--------
|
|
652
|
+
literal_stringizer
|
|
653
|
+
|
|
654
|
+
Notes
|
|
655
|
+
-----
|
|
656
|
+
Graph attributes named 'directed', 'multigraph', 'node' or
|
|
657
|
+
'edge', node attributes named 'id' or 'label', edge attributes
|
|
658
|
+
named 'source' or 'target' (or 'key' if `G` is a multigraph)
|
|
659
|
+
are ignored because these attribute names are used to encode the graph
|
|
660
|
+
structure.
|
|
661
|
+
|
|
662
|
+
GML files are stored using a 7-bit ASCII encoding with any extended
|
|
663
|
+
ASCII characters (iso8859-1) appearing as HTML character entities.
|
|
664
|
+
Without specifying a `stringizer`/`destringizer`, the code is capable of
|
|
665
|
+
writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
|
|
666
|
+
specification. For writing other data types, and for reading data other
|
|
667
|
+
than `str` you need to explicitly supply a `stringizer`/`destringizer`.
|
|
668
|
+
|
|
669
|
+
For additional documentation on the GML file format, please see the
|
|
670
|
+
`GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
|
|
671
|
+
|
|
672
|
+
See the module docstring :mod:`networkx.readwrite.gml` for more details.
|
|
673
|
+
|
|
674
|
+
Examples
|
|
675
|
+
--------
|
|
676
|
+
>>> G = nx.Graph()
|
|
677
|
+
>>> G.add_node("1")
|
|
678
|
+
>>> print("\n".join(nx.generate_gml(G)))
|
|
679
|
+
graph [
|
|
680
|
+
node [
|
|
681
|
+
id 0
|
|
682
|
+
label "1"
|
|
683
|
+
]
|
|
684
|
+
]
|
|
685
|
+
>>> G = nx.MultiGraph([("a", "b"), ("a", "b")])
|
|
686
|
+
>>> print("\n".join(nx.generate_gml(G)))
|
|
687
|
+
graph [
|
|
688
|
+
multigraph 1
|
|
689
|
+
node [
|
|
690
|
+
id 0
|
|
691
|
+
label "a"
|
|
692
|
+
]
|
|
693
|
+
node [
|
|
694
|
+
id 1
|
|
695
|
+
label "b"
|
|
696
|
+
]
|
|
697
|
+
edge [
|
|
698
|
+
source 0
|
|
699
|
+
target 1
|
|
700
|
+
key 0
|
|
701
|
+
]
|
|
702
|
+
edge [
|
|
703
|
+
source 0
|
|
704
|
+
target 1
|
|
705
|
+
key 1
|
|
706
|
+
]
|
|
707
|
+
]
|
|
708
|
+
"""
|
|
709
|
+
valid_keys = re.compile("^[A-Za-z][0-9A-Za-z_]*$")
|
|
710
|
+
|
|
711
|
+
def stringize(key, value, ignored_keys, indent, in_list=False):
|
|
712
|
+
if not isinstance(key, str):
|
|
713
|
+
raise NetworkXError(f"{key!r} is not a string")
|
|
714
|
+
if not valid_keys.match(key):
|
|
715
|
+
raise NetworkXError(f"{key!r} is not a valid key")
|
|
716
|
+
if not isinstance(key, str):
|
|
717
|
+
key = str(key)
|
|
718
|
+
if key not in ignored_keys:
|
|
719
|
+
if isinstance(value, int | bool):
|
|
720
|
+
if key == "label":
|
|
721
|
+
yield indent + key + ' "' + str(value) + '"'
|
|
722
|
+
elif value is True:
|
|
723
|
+
# python bool is an instance of int
|
|
724
|
+
yield indent + key + " 1"
|
|
725
|
+
elif value is False:
|
|
726
|
+
yield indent + key + " 0"
|
|
727
|
+
# GML only supports signed 32-bit integers
|
|
728
|
+
elif value < -(2**31) or value >= 2**31:
|
|
729
|
+
yield indent + key + ' "' + str(value) + '"'
|
|
730
|
+
else:
|
|
731
|
+
yield indent + key + " " + str(value)
|
|
732
|
+
elif isinstance(value, float):
|
|
733
|
+
text = repr(value).upper()
|
|
734
|
+
# GML matches INF to keys, so prepend + to INF. Use repr(float(*))
|
|
735
|
+
# instead of string literal to future proof against changes to repr.
|
|
736
|
+
if text == repr(float("inf")).upper():
|
|
737
|
+
text = "+" + text
|
|
738
|
+
else:
|
|
739
|
+
# GML requires that a real literal contain a decimal point, but
|
|
740
|
+
# repr may not output a decimal point when the mantissa is
|
|
741
|
+
# integral and hence needs fixing.
|
|
742
|
+
epos = text.rfind("E")
|
|
743
|
+
if epos != -1 and text.find(".", 0, epos) == -1:
|
|
744
|
+
text = text[:epos] + "." + text[epos:]
|
|
745
|
+
if key == "label":
|
|
746
|
+
yield indent + key + ' "' + text + '"'
|
|
747
|
+
else:
|
|
748
|
+
yield indent + key + " " + text
|
|
749
|
+
elif isinstance(value, dict):
|
|
750
|
+
yield indent + key + " ["
|
|
751
|
+
next_indent = indent + " "
|
|
752
|
+
for key, value in value.items():
|
|
753
|
+
yield from stringize(key, value, (), next_indent)
|
|
754
|
+
yield indent + "]"
|
|
755
|
+
elif isinstance(value, tuple) and key == "label":
|
|
756
|
+
yield indent + key + f' "({",".join(repr(v) for v in value)})"'
|
|
757
|
+
elif isinstance(value, list | tuple) and key != "label" and not in_list:
|
|
758
|
+
if len(value) == 0:
|
|
759
|
+
yield indent + key + " " + f'"{value!r}"'
|
|
760
|
+
if len(value) == 1:
|
|
761
|
+
yield indent + key + " " + f'"{LIST_START_VALUE}"'
|
|
762
|
+
for val in value:
|
|
763
|
+
yield from stringize(key, val, (), indent, True)
|
|
764
|
+
else:
|
|
765
|
+
if stringizer:
|
|
766
|
+
try:
|
|
767
|
+
value = stringizer(value)
|
|
768
|
+
except ValueError as err:
|
|
769
|
+
raise NetworkXError(
|
|
770
|
+
f"{value!r} cannot be converted into a string"
|
|
771
|
+
) from err
|
|
772
|
+
if not isinstance(value, str):
|
|
773
|
+
raise NetworkXError(f"{value!r} is not a string")
|
|
774
|
+
yield indent + key + ' "' + escape(value) + '"'
|
|
775
|
+
|
|
776
|
+
multigraph = G.is_multigraph()
|
|
777
|
+
yield "graph ["
|
|
778
|
+
|
|
779
|
+
# Output graph attributes
|
|
780
|
+
if G.is_directed():
|
|
781
|
+
yield " directed 1"
|
|
782
|
+
if multigraph:
|
|
783
|
+
yield " multigraph 1"
|
|
784
|
+
ignored_keys = {"directed", "multigraph", "node", "edge"}
|
|
785
|
+
for attr, value in G.graph.items():
|
|
786
|
+
yield from stringize(attr, value, ignored_keys, " ")
|
|
787
|
+
|
|
788
|
+
# Output node data
|
|
789
|
+
node_id = dict(zip(G, range(len(G))))
|
|
790
|
+
ignored_keys = {"id", "label"}
|
|
791
|
+
for node, attrs in G.nodes.items():
|
|
792
|
+
yield " node ["
|
|
793
|
+
yield " id " + str(node_id[node])
|
|
794
|
+
yield from stringize("label", node, (), " ")
|
|
795
|
+
for attr, value in attrs.items():
|
|
796
|
+
yield from stringize(attr, value, ignored_keys, " ")
|
|
797
|
+
yield " ]"
|
|
798
|
+
|
|
799
|
+
# Output edge data
|
|
800
|
+
ignored_keys = {"source", "target"}
|
|
801
|
+
kwargs = {"data": True}
|
|
802
|
+
if multigraph:
|
|
803
|
+
ignored_keys.add("key")
|
|
804
|
+
kwargs["keys"] = True
|
|
805
|
+
for e in G.edges(**kwargs):
|
|
806
|
+
yield " edge ["
|
|
807
|
+
yield " source " + str(node_id[e[0]])
|
|
808
|
+
yield " target " + str(node_id[e[1]])
|
|
809
|
+
if multigraph:
|
|
810
|
+
yield from stringize("key", e[2], (), " ")
|
|
811
|
+
for attr, value in e[-1].items():
|
|
812
|
+
yield from stringize(attr, value, ignored_keys, " ")
|
|
813
|
+
yield " ]"
|
|
814
|
+
yield "]"
|
|
815
|
+
|
|
816
|
+
|
|
817
|
+
@open_file(1, mode="wb")
|
|
818
|
+
def write_gml(G, path, stringizer=None):
|
|
819
|
+
"""Write a graph `G` in GML format to the file or file handle `path`.
|
|
820
|
+
|
|
821
|
+
Parameters
|
|
822
|
+
----------
|
|
823
|
+
G : NetworkX graph
|
|
824
|
+
The graph to be converted to GML.
|
|
825
|
+
|
|
826
|
+
path : string or file
|
|
827
|
+
Filename or file handle to write to.
|
|
828
|
+
Filenames ending in .gz or .bz2 will be compressed.
|
|
829
|
+
|
|
830
|
+
stringizer : callable, optional
|
|
831
|
+
A `stringizer` which converts non-int/non-float/non-dict values into
|
|
832
|
+
strings. If it cannot convert a value into a string, it should raise a
|
|
833
|
+
`ValueError` to indicate that. Default value: None.
|
|
834
|
+
|
|
835
|
+
Raises
|
|
836
|
+
------
|
|
837
|
+
NetworkXError
|
|
838
|
+
If `stringizer` cannot convert a value into a string, or the value to
|
|
839
|
+
convert is not a string while `stringizer` is None.
|
|
840
|
+
|
|
841
|
+
See Also
|
|
842
|
+
--------
|
|
843
|
+
read_gml, generate_gml
|
|
844
|
+
literal_stringizer
|
|
845
|
+
|
|
846
|
+
Notes
|
|
847
|
+
-----
|
|
848
|
+
Graph attributes named 'directed', 'multigraph', 'node' or
|
|
849
|
+
'edge', node attributes named 'id' or 'label', edge attributes
|
|
850
|
+
named 'source' or 'target' (or 'key' if `G` is a multigraph)
|
|
851
|
+
are ignored because these attribute names are used to encode the graph
|
|
852
|
+
structure.
|
|
853
|
+
|
|
854
|
+
GML files are stored using a 7-bit ASCII encoding with any extended
|
|
855
|
+
ASCII characters (iso8859-1) appearing as HTML character entities.
|
|
856
|
+
Without specifying a `stringizer`/`destringizer`, the code is capable of
|
|
857
|
+
writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
|
|
858
|
+
specification. For writing other data types, and for reading data other
|
|
859
|
+
than `str` you need to explicitly supply a `stringizer`/`destringizer`.
|
|
860
|
+
|
|
861
|
+
Note that while we allow non-standard GML to be read from a file, we make
|
|
862
|
+
sure to write GML format. In particular, underscores are not allowed in
|
|
863
|
+
attribute names.
|
|
864
|
+
For additional documentation on the GML file format, please see the
|
|
865
|
+
`GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
|
|
866
|
+
|
|
867
|
+
See the module docstring :mod:`networkx.readwrite.gml` for more details.
|
|
868
|
+
|
|
869
|
+
Examples
|
|
870
|
+
--------
|
|
871
|
+
>>> G = nx.path_graph(5)
|
|
872
|
+
>>> nx.write_gml(G, "test_path5.gml")
|
|
873
|
+
|
|
874
|
+
Filenames ending in .gz or .bz2 will be compressed.
|
|
875
|
+
|
|
876
|
+
>>> nx.write_gml(G, "test_path5.gml.gz")
|
|
877
|
+
"""
|
|
878
|
+
for line in generate_gml(G, stringizer):
|
|
879
|
+
path.write((line + "\n").encode("ascii"))
|