okstra 0.107.2 → 0.109.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (649) hide show
  1. package/package.json +1 -1
  2. package/runtime/BUILD.json +2 -2
  3. package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
  4. package/runtime/prompts/profiles/_common-contract.md +3 -2
  5. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  6. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  7. package/runtime/python/okstra_ctl/session.py +44 -0
  8. package/runtime/python/okstra_project/__init__.py +2 -0
  9. package/runtime/python/okstra_project/state.py +36 -0
  10. package/runtime/python/okstra_token_usage/claude.py +15 -9
  11. package/runtime/python/okstra_token_usage/cli.py +23 -0
  12. package/runtime/python/okstra_token_usage/collect.py +163 -4
  13. package/runtime/python/okstra_vendor/__init__.py +41 -0
  14. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  15. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  16. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  17. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  18. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  19. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  20. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  21. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  22. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  23. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  24. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  25. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  26. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  27. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  28. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  29. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  30. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  31. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  36. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  37. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  38. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  39. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  40. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  41. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  42. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  43. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  44. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  45. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  46. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  47. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
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@@ -0,0 +1,719 @@
1
+ """
2
+ Tests for ISMAGS isomorphism algorithm.
3
+ """
4
+
5
+ import random
6
+
7
+ import pytest
8
+
9
+ import networkx as nx
10
+ from networkx.algorithms import isomorphism as iso
11
+
12
+ graph_classes = [nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph]
13
+
14
+
15
+ def _matches_to_sets(matches):
16
+ """
17
+ Helper function to facilitate comparing collections of dictionaries in
18
+ which order does not matter.
19
+ """
20
+ return {frozenset(m.items()) for m in matches}
21
+
22
+
23
+ graph_examples = [
24
+ # node_data, edge_data, [id used in name for the test]
25
+ pytest.param([0, 1, 2, 3], [(0, 0)], id="isolated-nodes-and-selfloops"),
26
+ pytest.param([], nx.star_graph(3).edges, id="3-star"),
27
+ pytest.param(
28
+ # 6-cycle with 2-paths stuck onto nodes 0, 2, 4 (stretched symmetry)
29
+ [],
30
+ [
31
+ (0, 1),
32
+ (1, 2),
33
+ (2, 3),
34
+ (3, 4),
35
+ (4, 5),
36
+ (5, 0),
37
+ (0, 6),
38
+ (6, 7),
39
+ (2, 8),
40
+ (8, 9),
41
+ (4, 10),
42
+ (10, 11),
43
+ ],
44
+ id="sun:6-cycle-with-2-path-rays",
45
+ ),
46
+ # 0-1-2-3-5
47
+ # / \
48
+ # 4 6
49
+ pytest.param([], [(0, 1), (1, 2), (1, 4), (2, 3), (3, 5), (3, 6)], id="tree"),
50
+ pytest.param([], nx.petersen_graph().edges, id="petersen_graph"),
51
+ # Example Fig 3 from Houbraken, et al (ISMAGS paper)
52
+ pytest.param(
53
+ [], nx.cycle_graph([1, 2, 4, 3]).edges, id="houbraken-ismags-paper-fig3"
54
+ ),
55
+ pytest.param(
56
+ # path with node labels
57
+ [
58
+ (0, {"name": "a"}),
59
+ (1, {"name": "a"}),
60
+ (2, {"name": "b"}),
61
+ (3, {"name": "b"}),
62
+ (4, {"name": "a"}),
63
+ (5, {"name": "a"}),
64
+ ],
65
+ [(0, 1), (1, 2), (2, 3), (3, 4), (4, 5)],
66
+ id="path-with-node-labels",
67
+ ),
68
+ pytest.param(
69
+ # 5 - 4 \ / 12 - 13
70
+ # 0 - 3
71
+ # 9 - 8 / \ 16 - 17
72
+ # Assume 0 and 3 are coupled and no longer equivalent.
73
+ # Coupling node 4 to 8 means that 5 and 9
74
+ # are no longer equivalent, pushing them in their own partitions.
75
+ # So, [{5}, {9}] is no longer considered equivalent to {13, 17}.
76
+ # Minimal example with this trait. Adding all permutations of
77
+ # same-size parts at each step finds the symmetry.
78
+ [],
79
+ [
80
+ (0, 3),
81
+ (3, 0), # added to provide symmetry for DiGraphs
82
+ (0, 4),
83
+ (4, 5),
84
+ (0, 8),
85
+ (8, 9),
86
+ (3, 12),
87
+ (12, 13),
88
+ (3, 16),
89
+ (16, 17),
90
+ ],
91
+ id="gh8055-tricky-case",
92
+ ),
93
+ pytest.param(
94
+ [], nx.path_graph([1, 2, 3, "a", "b", "c"]).edges, id="unsortable-nodes"
95
+ ),
96
+ # Example from Katebi, 2012, Fig 1-3.
97
+ # Node order specified to (almost) match their DFS order
98
+ pytest.param(
99
+ [3, 5, 6, 4, 2, 1, 0],
100
+ set(nx.cycle_graph(4).edges) | set(nx.cycle_graph(range(4, 7)).edges),
101
+ id="katebi-paper-fig2",
102
+ ),
103
+ pytest.param(
104
+ [], [(0, 1), (1, 2), (2, 3), (3, 6), (2, 4), (4, 5)], id="len-2-rays-tri-star"
105
+ ),
106
+ # Example of refining permutations with two different length parts at the same time.
107
+ # Underlying shape is a 4-cycle and 2-path. Multiedges make all nodes degree-3
108
+ # Full simple graph is then obtained by extending each edge as a path thru 1 node.
109
+ # 0
110
+ # Underlying // \ 4 When 0->0 coupling occurs,
111
+ # MultiGraph 1 3 \\\ refining {1, 2, 3, 4, 5}
112
+ # \ // 5 refined parts [{1}, {3}, {2, 4, 5}]
113
+ # 2 with different parts having different lengths.
114
+ # 0
115
+ # /|\ 4
116
+ # 6 7 8 /|\
117
+ # Full: |/ | / | \
118
+ # 1 3 12 13 14
119
+ # | / \ \ | /
120
+ # 9 10 11 \|/
121
+ # \ | / 5
122
+ # 2
123
+ # Nodes 0-5 are the degree-3 nodes.
124
+ # Nodes 6-14 are degree 2 nodes on paths between the degree-3 nodes.
125
+ pytest.param(
126
+ [],
127
+ [
128
+ (0, 6),
129
+ (0, 7),
130
+ (0, 8),
131
+ (1, 6),
132
+ (1, 7),
133
+ (1, 9),
134
+ (2, 9),
135
+ (2, 10),
136
+ (2, 11),
137
+ (3, 8),
138
+ (3, 10),
139
+ (3, 11),
140
+ (4, 12),
141
+ (4, 13),
142
+ (4, 14),
143
+ (5, 12),
144
+ (5, 13),
145
+ (5, 14),
146
+ ],
147
+ id="refining-parts-finds-different-lengths",
148
+ ),
149
+ # Underlying structure from previous example
150
+ pytest.param(
151
+ [],
152
+ [(0, 1), (0, 1), (1, 2), (2, 3), (2, 3), (3, 0), (4, 5), (4, 5), (4, 5)],
153
+ id="basic-structure-for-refining-parts-test",
154
+ ),
155
+ ]
156
+
157
+
158
+ @pytest.mark.parametrize("graph_constructor", graph_classes)
159
+ class TestSelfIsomorphism:
160
+ @pytest.mark.parametrize(["node_data", "edge_data"], graph_examples)
161
+ def test_self_isomorphism(self, graph_constructor, node_data, edge_data):
162
+ """
163
+ For some small, symmetric graphs, make sure that 1) they are isomorphic
164
+ to themselves, and 2) that only the identity mapping is found.
165
+ """
166
+ graph = graph_constructor()
167
+ graph.add_nodes_from(node_data)
168
+ graph.add_edges_from(edge_data)
169
+
170
+ ismags = iso.ISMAGS(
171
+ graph, graph, node_match=iso.categorical_node_match("name", None)
172
+ )
173
+ assert ismags.is_isomorphic()
174
+ assert ismags.is_isomorphic(symmetry=True)
175
+ assert ismags.subgraph_is_isomorphic()
176
+ ismags_answer = list(ismags.subgraph_isomorphisms_iter(symmetry=True))
177
+ assert ismags_answer == [{n: n for n in graph.nodes}]
178
+
179
+
180
+ class TestSubgraphIsomorphism:
181
+ def test_isomorphism_4_sun(self):
182
+ g1 = nx.cycle_graph(4)
183
+ g2 = nx.cycle_graph(4)
184
+ g2.add_edges_from(list(zip(g2, range(4, 8))))
185
+ ismags = iso.ISMAGS(g2, g1)
186
+ assert list(ismags.subgraph_isomorphisms_iter(symmetry=True)) == [
187
+ {n: n for n in g1.nodes}
188
+ ]
189
+ assert sum(1 for _ in ismags.subgraph_isomorphisms_iter(symmetry=False)) == 8
190
+
191
+ def test_isomorphism_path_in_tristar(self):
192
+ g1 = nx.path_graph(3)
193
+
194
+ g2 = g1.copy()
195
+ g2.add_edge(1, 3)
196
+
197
+ ismags = iso.ISMAGS(g2, g1)
198
+ matches = ismags.subgraph_isomorphisms_iter(symmetry=True)
199
+ expected_symmetric = [
200
+ {0: 0, 1: 1, 2: 2},
201
+ {0: 0, 1: 1, 3: 2},
202
+ {2: 0, 1: 1, 3: 2},
203
+ ]
204
+ assert _matches_to_sets(matches) == _matches_to_sets(expected_symmetric)
205
+
206
+ matches = ismags.subgraph_isomorphisms_iter(symmetry=False)
207
+ expected_asymmetric = [
208
+ {0: 2, 1: 1, 2: 0},
209
+ {0: 2, 1: 1, 3: 0},
210
+ {2: 2, 1: 1, 3: 0},
211
+ ]
212
+ assert _matches_to_sets(matches) == _matches_to_sets(
213
+ expected_symmetric + expected_asymmetric
214
+ )
215
+
216
+ def test_labeled_nodes(self):
217
+ g1 = nx.cycle_graph(3)
218
+ g1.nodes[1]["attr"] = True
219
+
220
+ g2 = g1.copy()
221
+ g2.add_edge(1, 3)
222
+ ismags = iso.ISMAGS(g2, g1, node_match=lambda x, y: x == y)
223
+ matches = ismags.subgraph_isomorphisms_iter(symmetry=True)
224
+ expected_symmetric = [{0: 0, 1: 1, 2: 2}]
225
+ assert _matches_to_sets(matches) == _matches_to_sets(expected_symmetric)
226
+
227
+ matches = ismags.subgraph_isomorphisms_iter(symmetry=False)
228
+ expected_asymmetric = [{0: 2, 1: 1, 2: 0}]
229
+ assert _matches_to_sets(matches) == _matches_to_sets(
230
+ expected_symmetric + expected_asymmetric
231
+ )
232
+
233
+ def test_labeled_edges(self):
234
+ g1 = nx.Graph()
235
+ nx.add_cycle(g1, range(3))
236
+ g1.edges[1, 2]["attr"] = True
237
+
238
+ g2 = g1.copy()
239
+ g2.add_edge(1, 3)
240
+ ismags = iso.ISMAGS(g2, g1, edge_match=lambda x, y: x == y)
241
+ matches = ismags.subgraph_isomorphisms_iter(symmetry=True)
242
+ expected_symmetric = [{0: 0, 1: 1, 2: 2}]
243
+ assert _matches_to_sets(matches) == _matches_to_sets(expected_symmetric)
244
+
245
+ matches = ismags.subgraph_isomorphisms_iter(symmetry=False)
246
+ expected_asymmetric = [{1: 2, 0: 0, 2: 1}]
247
+ assert _matches_to_sets(matches) == _matches_to_sets(
248
+ expected_symmetric + expected_asymmetric
249
+ )
250
+
251
+ def test_exceptions_for_bad_match_functions(self):
252
+ def non_transitive_match(attrs1, attrs2):
253
+ return abs(attrs1["freq"] - attrs2["freq"]) <= 1
254
+
255
+ def simple_non_commutative_match(attrs1, attrs2):
256
+ return attrs1["freq"] == 1 + attrs2["freq"]
257
+
258
+ def non_commutative_match(attrs1, attrs2):
259
+ # red matches red and green
260
+ # green and blue only match themselves
261
+ if attrs2["color"] == "red":
262
+ return attrs2["color"] in {"red", "green"}
263
+ else:
264
+ return attrs1["color"] == attrs2["color"]
265
+
266
+ G1 = nx.Graph()
267
+ G1.add_node(0, color="red", freq=0)
268
+ G1.add_node(1, color="red", freq=1)
269
+ G1.add_node(2, color="blue", freq=2)
270
+
271
+ G2 = nx.Graph()
272
+ G2.add_node("A", color="red", freq=0)
273
+ G2.add_node("B", color="green", freq=1)
274
+ G2.add_node("C", color="blue", freq=2)
275
+
276
+ with pytest.raises(nx.NetworkXError, match="\nInvalid partition"):
277
+ iso.ISMAGS(G1, G2, node_match=non_transitive_match)
278
+
279
+ with pytest.raises(nx.NetworkXError, match="\nInvalid partition"):
280
+ iso.ISMAGS(G1, G2, node_match=simple_non_commutative_match)
281
+
282
+ with pytest.raises(nx.NetworkXError, match="\nInvalid partition"):
283
+ iso.ISMAGS(G1, G2, node_match=non_commutative_match)
284
+
285
+
286
+ def test_noncomparable_nodes():
287
+ node1 = object()
288
+ node2 = object()
289
+ node3 = object()
290
+
291
+ # Graph
292
+ G = nx.path_graph([node1, node2, node3])
293
+ gm = iso.ISMAGS(G, G)
294
+ assert gm.is_isomorphic()
295
+ assert gm.subgraph_is_isomorphic()
296
+
297
+ # DiGraph
298
+ G = nx.path_graph([node1, node2, node3], create_using=nx.DiGraph)
299
+ H = nx.path_graph([node3, node2, node1], create_using=nx.DiGraph)
300
+ dgm = iso.ISMAGS(G, H)
301
+ assert dgm.is_isomorphic()
302
+ assert dgm.is_isomorphic(symmetry=True)
303
+ assert dgm.subgraph_is_isomorphic()
304
+
305
+
306
+ @pytest.mark.parametrize("graph_constructor", graph_classes)
307
+ def test_selfloop(graph_constructor):
308
+ # Simple test for graphs with selfloops
309
+ g1 = graph_constructor([(0, 1), (0, 2), (1, 2), (1, 3), (2, 2), (2, 4)])
310
+ nodes = range(5)
311
+ rng = random.Random(42)
312
+
313
+ for _ in range(3):
314
+ new_nodes = list(nodes)
315
+ rng.shuffle(new_nodes)
316
+ d = dict(zip(nodes, new_nodes))
317
+ g2 = nx.relabel_nodes(g1, d)
318
+ assert iso.ISMAGS(g1, g2).is_isomorphic()
319
+
320
+
321
+ class TestWikipediaExample:
322
+ # example in wikipedia is g1a and g2b
323
+ # 1 have letter nodes, 2 have number nodes
324
+ # b have some edges reversed vs a (undirected still isomorphic)
325
+ # reversed edges marked with comment `#`
326
+ # isomorphism = {'a': 1, 'g': 2, 'b': 3, 'c': 6, 'h': 4, 'i': 5, 'j': 7, 'd': 8}
327
+
328
+ # Nodes 'a', 'b', 'c' and 'd' form a column.
329
+ # Nodes 'g', 'h', 'i' and 'j' form a column.
330
+ g1a_edges = [
331
+ ["a", "g"],
332
+ ["a", "h"], # edge direction swapped from g1b
333
+ ["a", "i"],
334
+ ["b", "g"], # edge direction swapped from g1b
335
+ ["b", "h"],
336
+ ["b", "j"],
337
+ ["c", "g"], # edge direction swapped from g1b
338
+ ["c", "i"], # edge direction swapped from g1b
339
+ ["c", "j"],
340
+ ["d", "h"], # edge direction swapped from g1b
341
+ ["d", "i"],
342
+ ["d", "j"], # edge direction swapped from g1b
343
+ ]
344
+
345
+ g1b_edges = [
346
+ ["a", "g"],
347
+ ["h", "a"], # edge direction swapped from g1a
348
+ ["a", "i"],
349
+ ["g", "b"], # edge direction swapped from g1a
350
+ ["b", "h"],
351
+ ["b", "j"],
352
+ ["g", "c"], # edge direction swapped from g1a
353
+ ["i", "c"], # edge direction swapped from g1a
354
+ ["c", "j"],
355
+ ["h", "d"], # edge direction swapped from g1a
356
+ ["d", "i"],
357
+ ["j", "d"], # edge direction swapped from g1a
358
+ ]
359
+
360
+ g2b_edges = [
361
+ [1, 2],
362
+ [1, 4], # edge direction swapped from g2a
363
+ [1, 5],
364
+ [3, 2], # edge direction swapped from g2a
365
+ [3, 4],
366
+ [3, 7],
367
+ [6, 2], # edge direction swapped from g2a
368
+ [6, 5], # edge direction swapped from g2a
369
+ [6, 7],
370
+ [8, 4], # edge direction swapped from g2a
371
+ [8, 5],
372
+ [8, 7], # edge direction swapped from g2a
373
+ ]
374
+
375
+ # Nodes 1,2,3,4 form the clockwise corners of a large square.
376
+ # Nodes 5,6,7,8 form the clockwise corners of a small square
377
+ g2a_edges = [
378
+ [1, 2],
379
+ [4, 1], # edge direction swapped from g2b
380
+ [1, 5],
381
+ [2, 3], # edge direction swapped from g2b
382
+ [3, 4],
383
+ [3, 7],
384
+ [2, 6], # edge direction swapped from g2b
385
+ [5, 6], # edge direction swapped from g2b
386
+ [6, 7],
387
+ [4, 8], # edge direction swapped from g2b
388
+ [8, 5],
389
+ [7, 8], # edge direction swapped from g2b
390
+ ]
391
+
392
+ @pytest.mark.parametrize("graph_constructor", [nx.Graph, nx.MultiGraph])
393
+ def test_graph(self, graph_constructor):
394
+ g1a = graph_constructor(self.g1a_edges)
395
+ g1b = graph_constructor(self.g1b_edges)
396
+ g2a = graph_constructor(self.g2a_edges)
397
+ g2b = graph_constructor(self.g2b_edges)
398
+ assert iso.ISMAGS(g1a, g1b).is_isomorphic()
399
+ assert iso.ISMAGS(g1a, g2a).is_isomorphic()
400
+ assert iso.ISMAGS(g1a, g2b).is_isomorphic()
401
+
402
+ assert iso.ISMAGS(g1a, nx.path_graph(range(5))).subgraph_is_isomorphic()
403
+ assert not iso.ISMAGS(g1a, nx.path_graph(range(6))).subgraph_is_isomorphic()
404
+
405
+ @pytest.mark.parametrize("graph_constructor", [nx.DiGraph, nx.MultiDiGraph])
406
+ def test_digraph(self, graph_constructor):
407
+ g1a = graph_constructor(self.g1a_edges)
408
+ g1b = graph_constructor(self.g1b_edges)
409
+ g2a = graph_constructor(self.g2a_edges)
410
+ g2b = graph_constructor(self.g2b_edges)
411
+ assert iso.ISMAGS(g1a, g2b).is_isomorphic()
412
+ assert iso.ISMAGS(g1b, g2a).is_isomorphic()
413
+ assert not iso.ISMAGS(g1a, g1b).is_isomorphic()
414
+ assert not iso.ISMAGS(g2a, g2b).is_isomorphic()
415
+ assert not iso.ISMAGS(g1a, g2a).is_isomorphic()
416
+ assert not iso.ISMAGS(g1b, g2b).is_isomorphic()
417
+
418
+ P2 = nx.path_graph(range(2), create_using=graph_constructor)
419
+ assert iso.ISMAGS(g1a, P2).subgraph_is_isomorphic()
420
+ P3 = nx.path_graph(range(3), create_using=graph_constructor)
421
+ assert not iso.ISMAGS(g1a, P3).subgraph_is_isomorphic()
422
+
423
+
424
+ class TestLargestCommonSubgraph:
425
+ def test_mcis(self):
426
+ # Example graphs from DOI: 10.1002/spe.588
427
+ graph1 = nx.Graph()
428
+ graph1.add_edges_from([(1, 2), (2, 3), (2, 4), (3, 4), (4, 5)])
429
+ graph1.nodes[1]["color"] = 0
430
+
431
+ graph2 = nx.Graph()
432
+ graph2.add_edges_from(
433
+ [(1, 2), (2, 3), (2, 4), (3, 4), (3, 5), (5, 6), (5, 7), (6, 7)]
434
+ )
435
+ graph2.nodes[1]["color"] = 1
436
+ graph2.nodes[6]["color"] = 2
437
+ graph2.nodes[7]["color"] = 2
438
+
439
+ ismags = iso.ISMAGS(
440
+ graph1, graph2, node_match=iso.categorical_node_match("color", None)
441
+ )
442
+ assert list(ismags.subgraph_isomorphisms_iter(symmetry=True)) == []
443
+ assert list(ismags.subgraph_isomorphisms_iter(symmetry=False)) == []
444
+ found_mcis = _matches_to_sets(ismags.largest_common_subgraph())
445
+ expected = _matches_to_sets(
446
+ [{2: 2, 3: 4, 4: 3, 5: 5}, {2: 4, 3: 2, 4: 3, 5: 5}]
447
+ )
448
+ assert expected == found_mcis
449
+
450
+ ismags = iso.ISMAGS(
451
+ graph2, graph1, node_match=iso.categorical_node_match("color", None)
452
+ )
453
+ assert list(ismags.subgraph_isomorphisms_iter(symmetry=True)) == []
454
+ assert list(ismags.subgraph_isomorphisms_iter(symmetry=False)) == []
455
+ found_mcis = _matches_to_sets(ismags.largest_common_subgraph())
456
+ # Same answer, but reversed.
457
+ expected = _matches_to_sets(
458
+ [{2: 2, 3: 4, 4: 3, 5: 5}, {4: 2, 2: 3, 3: 4, 5: 5}]
459
+ )
460
+ assert expected == found_mcis
461
+
462
+ def test_symmetry_mcis(self):
463
+ graph1 = nx.Graph()
464
+ nx.add_path(graph1, range(4))
465
+
466
+ graph2 = nx.Graph()
467
+ nx.add_path(graph2, range(3))
468
+ graph2.add_edge(1, 3)
469
+
470
+ # Only the symmetry of graph2 is taken into account here.
471
+ ismags1 = iso.ISMAGS(
472
+ graph1, graph2, node_match=iso.categorical_node_match("color", None)
473
+ )
474
+ assert list(ismags1.subgraph_isomorphisms_iter(symmetry=True)) == []
475
+ found_mcis = _matches_to_sets(ismags1.largest_common_subgraph())
476
+ expected = _matches_to_sets([{0: 0, 1: 1, 2: 2}, {1: 0, 3: 2, 2: 1}])
477
+ assert expected == found_mcis
478
+
479
+ # Only the symmetry of graph1 is taken into account here.
480
+ ismags2 = iso.ISMAGS(
481
+ graph2, graph1, node_match=iso.categorical_node_match("color", None)
482
+ )
483
+ assert list(ismags2.subgraph_isomorphisms_iter(symmetry=True)) == []
484
+ found_mcis = _matches_to_sets(ismags2.largest_common_subgraph())
485
+ expected = _matches_to_sets(
486
+ [
487
+ {3: 2, 0: 0, 1: 1},
488
+ {2: 0, 0: 2, 1: 1},
489
+ {3: 0, 0: 2, 1: 1},
490
+ {3: 0, 1: 1, 2: 2},
491
+ {0: 0, 1: 1, 2: 2},
492
+ {2: 0, 3: 2, 1: 1},
493
+ ]
494
+ )
495
+
496
+ assert expected == found_mcis
497
+
498
+ found_mcis1 = _matches_to_sets(ismags1.largest_common_subgraph(symmetry=False))
499
+ found_mcis2 = ismags2.largest_common_subgraph(symmetry=False)
500
+ found_mcis2 = [{v: k for k, v in d.items()} for d in found_mcis2]
501
+ found_mcis2 = _matches_to_sets(found_mcis2)
502
+
503
+ expected = _matches_to_sets(
504
+ [
505
+ {3: 2, 1: 3, 2: 1},
506
+ {2: 0, 0: 2, 1: 1},
507
+ {1: 2, 3: 3, 2: 1},
508
+ {3: 0, 1: 3, 2: 1},
509
+ {0: 2, 2: 3, 1: 1},
510
+ {3: 0, 1: 2, 2: 1},
511
+ {2: 0, 0: 3, 1: 1},
512
+ {0: 0, 2: 3, 1: 1},
513
+ {1: 0, 3: 3, 2: 1},
514
+ {1: 0, 3: 2, 2: 1},
515
+ {0: 3, 1: 1, 2: 2},
516
+ {0: 0, 1: 1, 2: 2},
517
+ ]
518
+ )
519
+ assert expected == found_mcis1
520
+ assert expected == found_mcis2
521
+
522
+
523
+ def is_isomorphic(G, SG, edge_match=None, node_match=None):
524
+ return iso.ISMAGS(G, SG, node_match, edge_match).is_isomorphic()
525
+
526
+
527
+ class TestDiGraphISO:
528
+ def test_wikipedia_graph(self):
529
+ edges1 = [
530
+ (1, 5),
531
+ (1, 2),
532
+ (1, 4),
533
+ (3, 2),
534
+ (6, 2),
535
+ (3, 4),
536
+ (7, 3),
537
+ (4, 8),
538
+ (5, 8),
539
+ (6, 5),
540
+ (6, 7),
541
+ (7, 8),
542
+ ]
543
+ mapped = {1: "a", 2: "h", 3: "d", 4: "i", 5: "g", 6: "b", 7: "j", 8: "c"}
544
+
545
+ G1 = nx.DiGraph(edges1)
546
+ G2 = nx.relabel_nodes(G1, mapped)
547
+
548
+ result = next(nx.isomorphism.ISMAGS(G1, G2).find_isomorphisms())
549
+ assert result == mapped
550
+
551
+ # Change the direction of an edge
552
+ G1.remove_edge(1, 5)
553
+ G1.add_edge(5, 1)
554
+ result = list(nx.isomorphism.ISMAGS(G1, G2).find_isomorphisms())
555
+ assert result == []
556
+
557
+ def test_non_isomorphic_same_degree_sequence(self):
558
+ r"""
559
+ G1 G2
560
+ 1-------------2 1-------------2
561
+ | \ | | \ |
562
+ | 5-------6 | | 5-------6 |
563
+ | | | | | | | |
564
+ | 8-------7 | | 8-------7 |
565
+ | / | | \ |
566
+ 4-------------3 4-------------3
567
+ """
568
+ edges1 = [
569
+ (1, 5),
570
+ (1, 2),
571
+ (4, 1),
572
+ (3, 2),
573
+ (3, 4),
574
+ (5, 8),
575
+ (6, 5),
576
+ (6, 7),
577
+ (7, 8),
578
+ (4, 8),
579
+ ]
580
+ edges2 = [
581
+ (1, 5),
582
+ (1, 2),
583
+ (4, 1),
584
+ (3, 2),
585
+ (3, 4),
586
+ (5, 8),
587
+ (6, 5),
588
+ (6, 7),
589
+ (8, 7),
590
+ (3, 7),
591
+ ]
592
+
593
+ G1 = nx.DiGraph(edges1)
594
+ G2 = nx.DiGraph(edges2)
595
+ assert not is_isomorphic(G1, G2)
596
+
597
+ def test_is_isomorphic(self):
598
+ G1 = nx.Graph([[1, 2], [1, 3], [1, 5], [2, 3]])
599
+ G2 = nx.Graph([[10, 20], [20, 30], [10, 30], [10, 50]])
600
+ G4 = nx.Graph([[1, 2], [1, 3], [1, 5], [2, 4]])
601
+ assert is_isomorphic(G1, G2)
602
+ assert not is_isomorphic(G1, G4)
603
+ assert is_isomorphic(G1.to_directed(), G2.to_directed())
604
+ assert not is_isomorphic(G1.to_directed(), G4.to_directed())
605
+ with pytest.raises(
606
+ ValueError, match="Directed and undirected graphs cannot be compared."
607
+ ):
608
+ is_isomorphic(G1.to_directed(), G1)
609
+
610
+
611
+ @pytest.mark.parametrize("graph_class", graph_classes)
612
+ def test_simple_node_match(graph_class):
613
+ g1 = graph_class([(0, 0), (0, 1), (1, 0)])
614
+ g2 = g1.copy()
615
+ nm = iso.numerical_node_match("size", 1)
616
+ assert is_isomorphic(g1, g2, node_match=nm)
617
+
618
+ g2.nodes[0]["size"] = 3
619
+ assert not is_isomorphic(g1, g2, node_match=nm)
620
+
621
+
622
+ @pytest.mark.parametrize("graph_class", graph_classes)
623
+ def test_simple_node_and_edge_match(graph_class):
624
+ g1 = graph_class()
625
+ g1.add_weighted_edges_from([(0, 0, 1.2), (0, 1, 1.4), (1, 0, 1.6)])
626
+ g2 = g1.copy()
627
+ nm = iso.numerical_node_match("size", 1)
628
+ if g1.is_multigraph():
629
+ em = iso.numerical_multiedge_match("weight", 1)
630
+ else:
631
+ em = iso.numerical_edge_match("weight", 1)
632
+ assert is_isomorphic(g1, g2, node_match=nm, edge_match=em)
633
+
634
+ g2.nodes[0]["size"] = 3
635
+ assert not is_isomorphic(g1, g2, node_match=nm, edge_match=em)
636
+
637
+ g2 = g1.copy()
638
+ if g1.is_multigraph():
639
+ g2.edges[0, 1, 0]["weight"] = 2.1
640
+ else:
641
+ g2.edges[0, 1]["weight"] = 2.1
642
+ assert not is_isomorphic(g1, g2, node_match=nm, edge_match=em)
643
+
644
+ g2 = g1.copy()
645
+ g2.nodes[0]["size"] = 3
646
+ if g1.is_multigraph():
647
+ g2.edges[0, 1, 0]["weight"] = 2.1
648
+ else:
649
+ g2.edges[0, 1]["weight"] = 2.1
650
+ assert not is_isomorphic(g1, g2, node_match=nm, edge_match=em)
651
+
652
+
653
+ @pytest.mark.parametrize("graph_class", graph_classes)
654
+ def test_simple_edge_match(graph_class):
655
+ # 16 simple tests
656
+ w = "weight"
657
+ edges = [(0, 0, 1), (0, 0, 1.5), (0, 1, 2), (1, 0, 3)]
658
+ g1 = graph_class()
659
+ g1.add_weighted_edges_from(edges)
660
+ g2 = g1.copy()
661
+ if g1.is_multigraph():
662
+ em = iso.numerical_multiedge_match("weight", 1)
663
+ else:
664
+ em = iso.numerical_edge_match("weight", 1)
665
+ assert is_isomorphic(g1, g2, edge_match=em)
666
+
667
+ for mod1, mod2 in [(False, True), (True, False), (True, True)]:
668
+ # mod1 tests a regular edge weight difference
669
+ # mod2 tests a selfloop weight difference
670
+ if g1.is_multigraph():
671
+ if mod1:
672
+ data1 = {0: {"weight": 10}}
673
+ if mod2:
674
+ data2 = {0: {"weight": 1}, 1: {"weight": 2.5}}
675
+ else:
676
+ if mod1:
677
+ data1 = {"weight": 10}
678
+ if mod2:
679
+ data2 = {"weight": 2.5}
680
+
681
+ g2 = g1.copy()
682
+ if mod1:
683
+ if not g1.is_directed():
684
+ g2._adj[1][0] = data1
685
+ g2._adj[0][1] = data1
686
+ else:
687
+ g2._succ[1][0] = data1
688
+ g2._pred[0][1] = data1
689
+ if mod2:
690
+ if not g1.is_directed():
691
+ g2._adj[0][0] = data2
692
+ else:
693
+ g2._succ[0][0] = data2
694
+ g2._pred[0][0] = data2
695
+
696
+ assert not is_isomorphic(g1, g2, edge_match=em)
697
+
698
+
699
+ @pytest.mark.parametrize("graph_class", graph_classes)
700
+ def test_weightkey(graph_class):
701
+ g1 = graph_class()
702
+ g2 = graph_class()
703
+ if g1.is_multigraph():
704
+ edge_match = iso.numerical_multiedge_match
705
+ else:
706
+ edge_match = iso.numerical_edge_match
707
+
708
+ g1.add_edge("A", "B", weight=1)
709
+ g2.add_edge("C", "D", weight=0)
710
+
711
+ assert nx.is_isomorphic(g1, g2)
712
+ em = edge_match("nonexistent attribute", 1)
713
+ assert nx.is_isomorphic(g1, g2, edge_match=em)
714
+ em = edge_match("weight", 1)
715
+ assert not nx.is_isomorphic(g1, g2, edge_match=em)
716
+
717
+ g2 = graph_class()
718
+ g2.add_edge("C", "D")
719
+ assert nx.is_isomorphic(g1, g2, edge_match=em)