okstra 0.107.2 → 0.109.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (649) hide show
  1. package/package.json +1 -1
  2. package/runtime/BUILD.json +2 -2
  3. package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
  4. package/runtime/prompts/profiles/_common-contract.md +3 -2
  5. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  6. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  7. package/runtime/python/okstra_ctl/session.py +44 -0
  8. package/runtime/python/okstra_project/__init__.py +2 -0
  9. package/runtime/python/okstra_project/state.py +36 -0
  10. package/runtime/python/okstra_token_usage/claude.py +15 -9
  11. package/runtime/python/okstra_token_usage/cli.py +23 -0
  12. package/runtime/python/okstra_token_usage/collect.py +163 -4
  13. package/runtime/python/okstra_vendor/__init__.py +41 -0
  14. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  15. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  16. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  17. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  18. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  19. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  20. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  21. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  22. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  23. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  24. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  25. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  26. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  27. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  28. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  29. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  30. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  31. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  36. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  37. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  38. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  39. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  40. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  41. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  42. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  43. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  44. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  45. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  46. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  47. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
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@@ -0,0 +1,831 @@
1
+ import itertools
2
+ import math
3
+ from random import Random
4
+
5
+ import pytest
6
+
7
+ import networkx as nx
8
+ from networkx import convert_node_labels_to_integers as cnlti
9
+ from networkx.algorithms.distance_measures import _extrema_bounding
10
+
11
+
12
+ def test__extrema_bounding_invalid_compute_kwarg():
13
+ G = nx.path_graph(3)
14
+ with pytest.raises(ValueError, match="compute must be one of"):
15
+ _extrema_bounding(G, compute="spam")
16
+
17
+
18
+ class TestDistance:
19
+ def setup_method(self):
20
+ self.G = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
21
+
22
+ @pytest.mark.parametrize("seed", list(range(10)))
23
+ @pytest.mark.parametrize("n", list(range(10, 20)))
24
+ @pytest.mark.parametrize("prob", [x / 10 for x in range(0, 10, 2)])
25
+ def test_use_bounds_on_off_consistency(self, seed, n, prob):
26
+ """Test for consistency of distance metrics when using usebounds=True.
27
+
28
+ We validate consistency for `networkx.diameter`, `networkx.radius`, `networkx.periphery`
29
+ and `networkx.center` when passing `usebounds=True`. Expectation is that method
30
+ returns the same result whether we pass usebounds=True or not.
31
+
32
+ For this we generate random connected graphs and validate method returns the same.
33
+ """
34
+ metrics = [nx.diameter, nx.radius, nx.periphery, nx.center]
35
+ max_weight = [5, 10, 1000]
36
+ rng = Random(seed)
37
+ # we compose it with a random tree to ensure graph is connected
38
+ G = nx.compose(
39
+ nx.random_labeled_tree(n, seed=rng),
40
+ nx.erdos_renyi_graph(n, prob, seed=rng),
41
+ )
42
+ for metric in metrics:
43
+ # checking unweighted case
44
+ assert metric(G) == metric(G, usebounds=True)
45
+ for w in max_weight:
46
+ for u, v in G.edges():
47
+ G[u][v]["w"] = rng.randint(0, w)
48
+ # checking weighted case
49
+ assert metric(G, weight="w") == metric(G, weight="w", usebounds=True)
50
+
51
+ def test_eccentricity(self):
52
+ assert nx.eccentricity(self.G, 1) == 6
53
+ e = nx.eccentricity(self.G)
54
+ assert e[1] == 6
55
+
56
+ sp = dict(nx.shortest_path_length(self.G))
57
+ e = nx.eccentricity(self.G, sp=sp)
58
+ assert e[1] == 6
59
+
60
+ e = nx.eccentricity(self.G, v=1)
61
+ assert e == 6
62
+
63
+ # This behavior changed in version 1.8 (ticket #739)
64
+ e = nx.eccentricity(self.G, v=[1, 1])
65
+ assert e[1] == 6
66
+ e = nx.eccentricity(self.G, v=[1, 2])
67
+ assert e[1] == 6
68
+
69
+ # test against graph with one node
70
+ G = nx.path_graph(1)
71
+ e = nx.eccentricity(G)
72
+ assert e[0] == 0
73
+ e = nx.eccentricity(G, v=0)
74
+ assert e == 0
75
+ pytest.raises(nx.NetworkXError, nx.eccentricity, G, 1)
76
+
77
+ # test against empty graph
78
+ G = nx.empty_graph()
79
+ e = nx.eccentricity(G)
80
+ assert e == {}
81
+
82
+ def test_diameter(self):
83
+ assert nx.diameter(self.G) == 6
84
+
85
+ def test_harmonic_diameter(self):
86
+ assert nx.harmonic_diameter(self.G) == pytest.approx(2.0477815699658715)
87
+ assert nx.harmonic_diameter(nx.star_graph(3)) == pytest.approx(1.333333)
88
+
89
+ def test_harmonic_diameter_empty(self):
90
+ assert math.isnan(nx.harmonic_diameter(nx.empty_graph()))
91
+
92
+ def test_harmonic_diameter_single_node(self):
93
+ assert math.isnan(nx.harmonic_diameter(nx.empty_graph(1)))
94
+
95
+ def test_harmonic_diameter_discrete(self):
96
+ assert math.isinf(nx.harmonic_diameter(nx.empty_graph(3)))
97
+
98
+ def test_harmonic_diameter_not_strongly_connected(self):
99
+ DG = nx.DiGraph()
100
+ DG.add_edge(0, 1)
101
+ assert nx.harmonic_diameter(DG) == 2
102
+
103
+ def test_harmonic_diameter_weighted_paths(self):
104
+ G = nx.star_graph(3)
105
+ # check defaults
106
+ G.add_weighted_edges_from([(*e, 1) for i, e in enumerate(G.edges)], "weight")
107
+ assert nx.harmonic_diameter(G) == pytest.approx(1.333333)
108
+ assert nx.harmonic_diameter(G, weight="weight") == pytest.approx(1.333333)
109
+
110
+ # check impact of weights and alternate weight name
111
+ G.add_weighted_edges_from([(*e, i) for i, e in enumerate(G.edges)], "dist")
112
+ assert nx.harmonic_diameter(G, weight="dist") == pytest.approx(1.8)
113
+
114
+ def test_radius(self):
115
+ assert nx.radius(self.G) == 4
116
+
117
+ def test_periphery(self):
118
+ assert set(nx.periphery(self.G)) == {1, 4, 13, 16}
119
+
120
+ def test_center_simple_tree(self):
121
+ G = nx.Graph([(1, 2), (1, 3), (2, 4), (2, 5)])
122
+ assert nx.center(G) == [1, 2]
123
+
124
+ @pytest.mark.parametrize("r", range(2, 5))
125
+ @pytest.mark.parametrize("h", range(1, 5))
126
+ def test_center_balanced_tree(self, r, h):
127
+ G = nx.balanced_tree(r, h)
128
+ assert nx.center(G) == [0]
129
+
130
+ def test_center(self):
131
+ assert set(nx.center(self.G)) == {6, 7, 10, 11}
132
+
133
+ @pytest.mark.parametrize("n", [1, 2, 99, 100])
134
+ def test_center_path_graphs(self, n):
135
+ G = nx.path_graph(n)
136
+ expected = {(n - 1) // 2, math.ceil((n - 1) / 2)}
137
+ assert set(nx.center(G)) == expected
138
+
139
+ def test_bound_diameter(self):
140
+ assert nx.diameter(self.G, usebounds=True) == 6
141
+
142
+ def test_bound_radius(self):
143
+ assert nx.radius(self.G, usebounds=True) == 4
144
+
145
+ def test_bound_periphery(self):
146
+ result = {1, 4, 13, 16}
147
+ assert set(nx.periphery(self.G, usebounds=True)) == result
148
+
149
+ def test_bound_center(self):
150
+ result = {6, 7, 10, 11}
151
+ assert set(nx.center(self.G, usebounds=True)) == result
152
+
153
+ def test_radius_exception(self):
154
+ G = nx.Graph()
155
+ G.add_edge(1, 2)
156
+ G.add_edge(3, 4)
157
+ pytest.raises(nx.NetworkXError, nx.diameter, G)
158
+
159
+ def test_eccentricity_infinite(self):
160
+ with pytest.raises(nx.NetworkXError):
161
+ G = nx.Graph([(1, 2), (3, 4)])
162
+ e = nx.eccentricity(G)
163
+
164
+ def test_eccentricity_undirected_not_connected(self):
165
+ with pytest.raises(nx.NetworkXError):
166
+ G = nx.Graph([(1, 2), (3, 4)])
167
+ e = nx.eccentricity(G, sp=1)
168
+
169
+ def test_eccentricity_directed_weakly_connected(self):
170
+ with pytest.raises(nx.NetworkXError):
171
+ DG = nx.DiGraph([(1, 2), (1, 3)])
172
+ nx.eccentricity(DG)
173
+
174
+
175
+ class TestWeightedDistance:
176
+ def setup_method(self):
177
+ G = nx.Graph()
178
+ G.add_edge(0, 1, weight=0.6, cost=0.6, high_cost=6)
179
+ G.add_edge(0, 2, weight=0.2, cost=0.2, high_cost=2)
180
+ G.add_edge(2, 3, weight=0.1, cost=0.1, high_cost=1)
181
+ G.add_edge(2, 4, weight=0.7, cost=0.7, high_cost=7)
182
+ G.add_edge(2, 5, weight=0.9, cost=0.9, high_cost=9)
183
+ G.add_edge(1, 5, weight=0.3, cost=0.3, high_cost=3)
184
+ self.G = G
185
+ self.weight_fn = lambda v, u, e: 2
186
+
187
+ def test_eccentricity_weight_None(self):
188
+ assert nx.eccentricity(self.G, 1, weight=None) == 3
189
+ e = nx.eccentricity(self.G, weight=None)
190
+ assert e[1] == 3
191
+
192
+ e = nx.eccentricity(self.G, v=1, weight=None)
193
+ assert e == 3
194
+
195
+ # This behavior changed in version 1.8 (ticket #739)
196
+ e = nx.eccentricity(self.G, v=[1, 1], weight=None)
197
+ assert e[1] == 3
198
+ e = nx.eccentricity(self.G, v=[1, 2], weight=None)
199
+ assert e[1] == 3
200
+
201
+ def test_eccentricity_weight_attr(self):
202
+ assert nx.eccentricity(self.G, 1, weight="weight") == 1.5
203
+ e = nx.eccentricity(self.G, weight="weight")
204
+ assert (
205
+ e
206
+ == nx.eccentricity(self.G, weight="cost")
207
+ != nx.eccentricity(self.G, weight="high_cost")
208
+ )
209
+ assert e[1] == 1.5
210
+
211
+ e = nx.eccentricity(self.G, v=1, weight="weight")
212
+ assert e == 1.5
213
+
214
+ # This behavior changed in version 1.8 (ticket #739)
215
+ e = nx.eccentricity(self.G, v=[1, 1], weight="weight")
216
+ assert e[1] == 1.5
217
+ e = nx.eccentricity(self.G, v=[1, 2], weight="weight")
218
+ assert e[1] == 1.5
219
+
220
+ def test_eccentricity_weight_fn(self):
221
+ assert nx.eccentricity(self.G, 1, weight=self.weight_fn) == 6
222
+ e = nx.eccentricity(self.G, weight=self.weight_fn)
223
+ assert e[1] == 6
224
+
225
+ e = nx.eccentricity(self.G, v=1, weight=self.weight_fn)
226
+ assert e == 6
227
+
228
+ # This behavior changed in version 1.8 (ticket #739)
229
+ e = nx.eccentricity(self.G, v=[1, 1], weight=self.weight_fn)
230
+ assert e[1] == 6
231
+ e = nx.eccentricity(self.G, v=[1, 2], weight=self.weight_fn)
232
+ assert e[1] == 6
233
+
234
+ def test_diameter_weight_None(self):
235
+ assert nx.diameter(self.G, weight=None) == 3
236
+
237
+ def test_diameter_weight_attr(self):
238
+ assert (
239
+ nx.diameter(self.G, weight="weight")
240
+ == nx.diameter(self.G, weight="cost")
241
+ == 1.6
242
+ != nx.diameter(self.G, weight="high_cost")
243
+ )
244
+
245
+ def test_diameter_weight_fn(self):
246
+ assert nx.diameter(self.G, weight=self.weight_fn) == 6
247
+
248
+ def test_radius_weight_None(self):
249
+ assert pytest.approx(nx.radius(self.G, weight=None)) == 2
250
+
251
+ def test_radius_weight_attr(self):
252
+ assert (
253
+ pytest.approx(nx.radius(self.G, weight="weight"))
254
+ == pytest.approx(nx.radius(self.G, weight="cost"))
255
+ == 0.9
256
+ != nx.radius(self.G, weight="high_cost")
257
+ )
258
+
259
+ def test_radius_weight_fn(self):
260
+ assert nx.radius(self.G, weight=self.weight_fn) == 4
261
+
262
+ def test_periphery_weight_None(self):
263
+ for v in set(nx.periphery(self.G, weight=None)):
264
+ assert nx.eccentricity(self.G, v, weight=None) == nx.diameter(
265
+ self.G, weight=None
266
+ )
267
+
268
+ def test_periphery_weight_attr(self):
269
+ periphery = set(nx.periphery(self.G, weight="weight"))
270
+ assert (
271
+ periphery
272
+ == set(nx.periphery(self.G, weight="cost"))
273
+ == set(nx.periphery(self.G, weight="high_cost"))
274
+ )
275
+ for v in periphery:
276
+ assert (
277
+ nx.eccentricity(self.G, v, weight="high_cost")
278
+ != nx.eccentricity(self.G, v, weight="weight")
279
+ == nx.eccentricity(self.G, v, weight="cost")
280
+ == nx.diameter(self.G, weight="weight")
281
+ == nx.diameter(self.G, weight="cost")
282
+ != nx.diameter(self.G, weight="high_cost")
283
+ )
284
+ assert nx.eccentricity(self.G, v, weight="high_cost") == nx.diameter(
285
+ self.G, weight="high_cost"
286
+ )
287
+
288
+ def test_periphery_weight_fn(self):
289
+ for v in set(nx.periphery(self.G, weight=self.weight_fn)):
290
+ assert nx.eccentricity(self.G, v, weight=self.weight_fn) == nx.diameter(
291
+ self.G, weight=self.weight_fn
292
+ )
293
+
294
+ def test_center_weight_None(self):
295
+ for v in set(nx.center(self.G, weight=None)):
296
+ assert pytest.approx(nx.eccentricity(self.G, v, weight=None)) == nx.radius(
297
+ self.G, weight=None
298
+ )
299
+
300
+ def test_center_weight_attr(self):
301
+ center = set(nx.center(self.G, weight="weight"))
302
+ assert (
303
+ center
304
+ == set(nx.center(self.G, weight="cost"))
305
+ != set(nx.center(self.G, weight="high_cost"))
306
+ )
307
+ for v in center:
308
+ assert (
309
+ nx.eccentricity(self.G, v, weight="high_cost")
310
+ != pytest.approx(nx.eccentricity(self.G, v, weight="weight"))
311
+ == pytest.approx(nx.eccentricity(self.G, v, weight="cost"))
312
+ == nx.radius(self.G, weight="weight")
313
+ == nx.radius(self.G, weight="cost")
314
+ != nx.radius(self.G, weight="high_cost")
315
+ )
316
+ assert nx.eccentricity(self.G, v, weight="high_cost") == nx.radius(
317
+ self.G, weight="high_cost"
318
+ )
319
+
320
+ def test_center_weight_fn(self):
321
+ for v in set(nx.center(self.G, weight=self.weight_fn)):
322
+ assert nx.eccentricity(self.G, v, weight=self.weight_fn) == nx.radius(
323
+ self.G, weight=self.weight_fn
324
+ )
325
+
326
+ def test_bound_diameter_weight_None(self):
327
+ assert nx.diameter(self.G, usebounds=True, weight=None) == 3
328
+
329
+ def test_bound_diameter_weight_attr(self):
330
+ assert (
331
+ nx.diameter(self.G, usebounds=True, weight="high_cost")
332
+ != nx.diameter(self.G, usebounds=True, weight="weight")
333
+ == nx.diameter(self.G, usebounds=True, weight="cost")
334
+ == 1.6
335
+ != nx.diameter(self.G, usebounds=True, weight="high_cost")
336
+ )
337
+ assert nx.diameter(self.G, usebounds=True, weight="high_cost") == nx.diameter(
338
+ self.G, usebounds=True, weight="high_cost"
339
+ )
340
+
341
+ def test_bound_diameter_weight_fn(self):
342
+ assert nx.diameter(self.G, usebounds=True, weight=self.weight_fn) == 6
343
+
344
+ def test_bound_radius_weight_None(self):
345
+ assert pytest.approx(nx.radius(self.G, usebounds=True, weight=None)) == 2
346
+
347
+ def test_bound_radius_weight_attr(self):
348
+ assert (
349
+ nx.radius(self.G, usebounds=True, weight="high_cost")
350
+ != pytest.approx(nx.radius(self.G, usebounds=True, weight="weight"))
351
+ == pytest.approx(nx.radius(self.G, usebounds=True, weight="cost"))
352
+ == 0.9
353
+ != nx.radius(self.G, usebounds=True, weight="high_cost")
354
+ )
355
+ assert nx.radius(self.G, usebounds=True, weight="high_cost") == nx.radius(
356
+ self.G, usebounds=True, weight="high_cost"
357
+ )
358
+
359
+ def test_bound_radius_weight_fn(self):
360
+ assert nx.radius(self.G, usebounds=True, weight=self.weight_fn) == 4
361
+
362
+ def test_bound_periphery_weight_None(self):
363
+ result = {1, 3, 4}
364
+ assert set(nx.periphery(self.G, usebounds=True, weight=None)) == result
365
+
366
+ def test_bound_periphery_weight_attr(self):
367
+ result = {4, 5}
368
+ assert (
369
+ set(nx.periphery(self.G, usebounds=True, weight="weight"))
370
+ == set(nx.periphery(self.G, usebounds=True, weight="cost"))
371
+ == result
372
+ )
373
+
374
+ def test_bound_periphery_weight_fn(self):
375
+ result = {1, 3, 4}
376
+ assert (
377
+ set(nx.periphery(self.G, usebounds=True, weight=self.weight_fn)) == result
378
+ )
379
+
380
+ def test_bound_center_weight_None(self):
381
+ result = {0, 2, 5}
382
+ assert set(nx.center(self.G, usebounds=True, weight=None)) == result
383
+
384
+ def test_bound_center_weight_attr(self):
385
+ result = {0}
386
+ assert (
387
+ set(nx.center(self.G, usebounds=True, weight="weight"))
388
+ == set(nx.center(self.G, usebounds=True, weight="cost"))
389
+ == result
390
+ )
391
+
392
+ def test_bound_center_weight_fn(self):
393
+ result = {0, 2, 5}
394
+ assert set(nx.center(self.G, usebounds=True, weight=self.weight_fn)) == result
395
+
396
+
397
+ class TestResistanceDistance:
398
+ @classmethod
399
+ def setup_class(cls):
400
+ global np
401
+ np = pytest.importorskip("numpy")
402
+ sp = pytest.importorskip("scipy")
403
+
404
+ def setup_method(self):
405
+ G = nx.Graph()
406
+ G.add_edge(1, 2, weight=2)
407
+ G.add_edge(2, 3, weight=4)
408
+ G.add_edge(3, 4, weight=1)
409
+ G.add_edge(1, 4, weight=3)
410
+ self.G = G
411
+
412
+ def test_resistance_distance_directed_graph(self):
413
+ G = nx.DiGraph()
414
+ with pytest.raises(nx.NetworkXNotImplemented):
415
+ nx.resistance_distance(G)
416
+
417
+ def test_resistance_distance_empty(self):
418
+ G = nx.Graph()
419
+ with pytest.raises(nx.NetworkXError):
420
+ nx.resistance_distance(G)
421
+
422
+ def test_resistance_distance_not_connected(self):
423
+ with pytest.raises(nx.NetworkXError):
424
+ self.G.add_node(5)
425
+ nx.resistance_distance(self.G, 1, 5)
426
+
427
+ def test_resistance_distance_nodeA_not_in_graph(self):
428
+ with pytest.raises(nx.NetworkXError):
429
+ nx.resistance_distance(self.G, 9, 1)
430
+
431
+ def test_resistance_distance_nodeB_not_in_graph(self):
432
+ with pytest.raises(nx.NetworkXError):
433
+ nx.resistance_distance(self.G, 1, 9)
434
+
435
+ def test_resistance_distance(self):
436
+ rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
437
+ test_data = 1 / (1 / (2 + 4) + 1 / (1 + 3))
438
+ assert round(rd, 5) == round(test_data, 5)
439
+
440
+ def test_resistance_distance_noinv(self):
441
+ rd = nx.resistance_distance(self.G, 1, 3, "weight", False)
442
+ test_data = 1 / (1 / (1 / 2 + 1 / 4) + 1 / (1 / 1 + 1 / 3))
443
+ assert round(rd, 5) == round(test_data, 5)
444
+
445
+ def test_resistance_distance_no_weight(self):
446
+ rd = nx.resistance_distance(self.G, 1, 3)
447
+ assert round(rd, 5) == 1
448
+
449
+ def test_resistance_distance_neg_weight(self):
450
+ self.G[2][3]["weight"] = -4
451
+ rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
452
+ test_data = 1 / (1 / (2 + -4) + 1 / (1 + 3))
453
+ assert round(rd, 5) == round(test_data, 5)
454
+
455
+ def test_multigraph(self):
456
+ G = nx.MultiGraph()
457
+ G.add_edge(1, 2, weight=2)
458
+ G.add_edge(2, 3, weight=4)
459
+ G.add_edge(3, 4, weight=1)
460
+ G.add_edge(1, 4, weight=3)
461
+ rd = nx.resistance_distance(G, 1, 3, "weight", True)
462
+ assert np.isclose(rd, 1 / (1 / (2 + 4) + 1 / (1 + 3)))
463
+
464
+ def test_resistance_distance_div0(self):
465
+ with pytest.raises(ZeroDivisionError):
466
+ self.G[1][2]["weight"] = 0
467
+ nx.resistance_distance(self.G, 1, 3, "weight")
468
+
469
+ def test_resistance_distance_same_node(self):
470
+ assert nx.resistance_distance(self.G, 1, 1) == 0
471
+
472
+ def test_resistance_distance_only_nodeA(self):
473
+ rd = nx.resistance_distance(self.G, nodeA=1)
474
+ test_data = {}
475
+ test_data[1] = 0
476
+ test_data[2] = 0.75
477
+ test_data[3] = 1
478
+ test_data[4] = 0.75
479
+ assert isinstance(rd, dict)
480
+ assert sorted(rd.keys()) == sorted(test_data.keys())
481
+ for key in rd:
482
+ assert np.isclose(rd[key], test_data[key])
483
+
484
+ def test_resistance_distance_only_nodeB(self):
485
+ rd = nx.resistance_distance(self.G, nodeB=1)
486
+ test_data = {}
487
+ test_data[1] = 0
488
+ test_data[2] = 0.75
489
+ test_data[3] = 1
490
+ test_data[4] = 0.75
491
+ assert isinstance(rd, dict)
492
+ assert sorted(rd.keys()) == sorted(test_data.keys())
493
+ for key in rd:
494
+ assert np.isclose(rd[key], test_data[key])
495
+
496
+ def test_resistance_distance_all(self):
497
+ rd = nx.resistance_distance(self.G)
498
+ assert isinstance(rd, dict)
499
+ assert round(rd[1][3], 5) == 1
500
+
501
+
502
+ class TestEffectiveGraphResistance:
503
+ @classmethod
504
+ def setup_class(cls):
505
+ global np
506
+ np = pytest.importorskip("numpy")
507
+ sp = pytest.importorskip("scipy")
508
+
509
+ def setup_method(self):
510
+ G = nx.Graph()
511
+ G.add_edge(1, 2, weight=2)
512
+ G.add_edge(1, 3, weight=1)
513
+ G.add_edge(2, 3, weight=4)
514
+ self.G = G
515
+
516
+ def test_effective_graph_resistance_directed_graph(self):
517
+ G = nx.DiGraph()
518
+ with pytest.raises(nx.NetworkXNotImplemented):
519
+ nx.effective_graph_resistance(G)
520
+
521
+ def test_effective_graph_resistance_empty(self):
522
+ G = nx.Graph()
523
+ with pytest.raises(nx.NetworkXError):
524
+ nx.effective_graph_resistance(G)
525
+
526
+ def test_effective_graph_resistance_not_connected(self):
527
+ G = nx.Graph([(1, 2), (3, 4)])
528
+ RG = nx.effective_graph_resistance(G)
529
+ assert np.isinf(RG)
530
+
531
+ def test_effective_graph_resistance(self):
532
+ RG = nx.effective_graph_resistance(self.G, "weight", True)
533
+ rd12 = 1 / (1 / (1 + 4) + 1 / 2)
534
+ rd13 = 1 / (1 / (1 + 2) + 1 / 4)
535
+ rd23 = 1 / (1 / (2 + 4) + 1 / 1)
536
+ assert np.isclose(RG, rd12 + rd13 + rd23)
537
+
538
+ def test_effective_graph_resistance_noinv(self):
539
+ RG = nx.effective_graph_resistance(self.G, "weight", False)
540
+ rd12 = 1 / (1 / (1 / 1 + 1 / 4) + 1 / (1 / 2))
541
+ rd13 = 1 / (1 / (1 / 1 + 1 / 2) + 1 / (1 / 4))
542
+ rd23 = 1 / (1 / (1 / 2 + 1 / 4) + 1 / (1 / 1))
543
+ assert np.isclose(RG, rd12 + rd13 + rd23)
544
+
545
+ def test_effective_graph_resistance_no_weight(self):
546
+ RG = nx.effective_graph_resistance(self.G)
547
+ assert np.isclose(RG, 2)
548
+
549
+ def test_effective_graph_resistance_neg_weight(self):
550
+ self.G[2][3]["weight"] = -4
551
+ RG = nx.effective_graph_resistance(self.G, "weight", True)
552
+ rd12 = 1 / (1 / (1 + -4) + 1 / 2)
553
+ rd13 = 1 / (1 / (1 + 2) + 1 / (-4))
554
+ rd23 = 1 / (1 / (2 + -4) + 1 / 1)
555
+ assert np.isclose(RG, rd12 + rd13 + rd23)
556
+
557
+ def test_effective_graph_resistance_multigraph(self):
558
+ G = nx.MultiGraph()
559
+ G.add_edge(1, 2, weight=2)
560
+ G.add_edge(1, 3, weight=1)
561
+ G.add_edge(2, 3, weight=1)
562
+ G.add_edge(2, 3, weight=3)
563
+ RG = nx.effective_graph_resistance(G, "weight", True)
564
+ edge23 = 1 / (1 / 1 + 1 / 3)
565
+ rd12 = 1 / (1 / (1 + edge23) + 1 / 2)
566
+ rd13 = 1 / (1 / (1 + 2) + 1 / edge23)
567
+ rd23 = 1 / (1 / (2 + edge23) + 1 / 1)
568
+ assert np.isclose(RG, rd12 + rd13 + rd23)
569
+
570
+ def test_effective_graph_resistance_div0(self):
571
+ with pytest.raises(ZeroDivisionError):
572
+ self.G[1][2]["weight"] = 0
573
+ nx.effective_graph_resistance(self.G, "weight")
574
+
575
+ def test_effective_graph_resistance_complete_graph(self):
576
+ N = 10
577
+ G = nx.complete_graph(N)
578
+ RG = nx.effective_graph_resistance(G)
579
+ assert np.isclose(RG, N - 1)
580
+
581
+ def test_effective_graph_resistance_path_graph(self):
582
+ N = 10
583
+ G = nx.path_graph(N)
584
+ RG = nx.effective_graph_resistance(G)
585
+ assert np.isclose(RG, (N - 1) * N * (N + 1) // 6)
586
+
587
+
588
+ class TestBarycenter:
589
+ """Test :func:`networkx.algorithms.distance_measures.barycenter`."""
590
+
591
+ def barycenter_as_subgraph(self, g, **kwargs):
592
+ """Return the subgraph induced on the barycenter of g"""
593
+ b = nx.barycenter(g, **kwargs)
594
+ assert isinstance(b, list)
595
+ assert set(b) <= set(g)
596
+ return g.subgraph(b)
597
+
598
+ def test_must_be_connected(self):
599
+ pytest.raises(nx.NetworkXNoPath, nx.barycenter, nx.empty_graph(5))
600
+
601
+ def test_sp_kwarg(self):
602
+ # Complete graph K_5. Normally it works...
603
+ K_5 = nx.complete_graph(5)
604
+ sp = dict(nx.shortest_path_length(K_5))
605
+ assert nx.barycenter(K_5, sp=sp) == list(K_5)
606
+
607
+ # ...but not with the weight argument
608
+ for u, v, data in K_5.edges.data():
609
+ data["weight"] = 1
610
+ pytest.raises(ValueError, nx.barycenter, K_5, sp=sp, weight="weight")
611
+
612
+ # ...and a corrupted sp can make it seem like K_5 is disconnected
613
+ del sp[0][1]
614
+ pytest.raises(nx.NetworkXNoPath, nx.barycenter, K_5, sp=sp)
615
+
616
+ def test_trees(self):
617
+ """The barycenter of a tree is a single vertex or an edge.
618
+
619
+ See [West01]_, p. 78.
620
+ """
621
+ prng = Random(0xDEADBEEF)
622
+ for i in range(50):
623
+ RT = nx.random_labeled_tree(prng.randint(1, 75), seed=prng)
624
+ b = self.barycenter_as_subgraph(RT)
625
+ if len(b) == 2:
626
+ assert b.size() == 1
627
+ else:
628
+ assert len(b) == 1
629
+ assert b.size() == 0
630
+
631
+ def test_this_one_specific_tree(self):
632
+ """Test the tree pictured at the bottom of [West01]_, p. 78."""
633
+ g = nx.Graph(
634
+ {
635
+ "a": ["b"],
636
+ "b": ["a", "x"],
637
+ "x": ["b", "y"],
638
+ "y": ["x", "z"],
639
+ "z": ["y", 0, 1, 2, 3, 4],
640
+ 0: ["z"],
641
+ 1: ["z"],
642
+ 2: ["z"],
643
+ 3: ["z"],
644
+ 4: ["z"],
645
+ }
646
+ )
647
+ b = self.barycenter_as_subgraph(g, attr="barycentricity")
648
+ assert list(b) == ["z"]
649
+ assert not b.edges
650
+ expected_barycentricity = {
651
+ 0: 23,
652
+ 1: 23,
653
+ 2: 23,
654
+ 3: 23,
655
+ 4: 23,
656
+ "a": 35,
657
+ "b": 27,
658
+ "x": 21,
659
+ "y": 17,
660
+ "z": 15,
661
+ }
662
+ for node, barycentricity in expected_barycentricity.items():
663
+ assert g.nodes[node]["barycentricity"] == barycentricity
664
+
665
+ # Doubling weights should do nothing but double the barycentricities
666
+ for edge in g.edges:
667
+ g.edges[edge]["weight"] = 2
668
+ b = self.barycenter_as_subgraph(g, weight="weight", attr="barycentricity2")
669
+ assert list(b) == ["z"]
670
+ assert not b.edges
671
+ for node, barycentricity in expected_barycentricity.items():
672
+ assert g.nodes[node]["barycentricity2"] == barycentricity * 2
673
+
674
+
675
+ class TestKemenyConstant:
676
+ @classmethod
677
+ def setup_class(cls):
678
+ global np
679
+ np = pytest.importorskip("numpy")
680
+ sp = pytest.importorskip("scipy")
681
+
682
+ def setup_method(self):
683
+ G = nx.Graph()
684
+ w12 = 2
685
+ w13 = 3
686
+ w23 = 4
687
+ G.add_edge(1, 2, weight=w12)
688
+ G.add_edge(1, 3, weight=w13)
689
+ G.add_edge(2, 3, weight=w23)
690
+ self.G = G
691
+
692
+ def test_kemeny_constant_directed(self):
693
+ G = nx.DiGraph()
694
+ G.add_edge(1, 2)
695
+ G.add_edge(1, 3)
696
+ G.add_edge(2, 3)
697
+ with pytest.raises(nx.NetworkXNotImplemented):
698
+ nx.kemeny_constant(G)
699
+
700
+ def test_kemeny_constant_not_connected(self):
701
+ self.G.add_node(5)
702
+ with pytest.raises(nx.NetworkXError):
703
+ nx.kemeny_constant(self.G)
704
+
705
+ def test_kemeny_constant_no_nodes(self):
706
+ G = nx.Graph()
707
+ with pytest.raises(nx.NetworkXError):
708
+ nx.kemeny_constant(G)
709
+
710
+ def test_kemeny_constant_negative_weight(self):
711
+ G = nx.Graph()
712
+ w12 = 2
713
+ w13 = 3
714
+ w23 = -10
715
+ G.add_edge(1, 2, weight=w12)
716
+ G.add_edge(1, 3, weight=w13)
717
+ G.add_edge(2, 3, weight=w23)
718
+ with pytest.raises(nx.NetworkXError):
719
+ nx.kemeny_constant(G, weight="weight")
720
+
721
+ def test_kemeny_constant(self):
722
+ K = nx.kemeny_constant(self.G, weight="weight")
723
+ w12 = 2
724
+ w13 = 3
725
+ w23 = 4
726
+ test_data = (
727
+ 3
728
+ / 2
729
+ * (w12 + w13)
730
+ * (w12 + w23)
731
+ * (w13 + w23)
732
+ / (
733
+ w12**2 * (w13 + w23)
734
+ + w13**2 * (w12 + w23)
735
+ + w23**2 * (w12 + w13)
736
+ + 3 * w12 * w13 * w23
737
+ )
738
+ )
739
+ assert np.isclose(K, test_data)
740
+
741
+ def test_kemeny_constant_no_weight(self):
742
+ K = nx.kemeny_constant(self.G)
743
+ assert np.isclose(K, 4 / 3)
744
+
745
+ def test_kemeny_constant_multigraph(self):
746
+ G = nx.MultiGraph()
747
+ w12_1 = 2
748
+ w12_2 = 1
749
+ w13 = 3
750
+ w23 = 4
751
+ G.add_edge(1, 2, weight=w12_1)
752
+ G.add_edge(1, 2, weight=w12_2)
753
+ G.add_edge(1, 3, weight=w13)
754
+ G.add_edge(2, 3, weight=w23)
755
+ K = nx.kemeny_constant(G, weight="weight")
756
+ w12 = w12_1 + w12_2
757
+ test_data = (
758
+ 3
759
+ / 2
760
+ * (w12 + w13)
761
+ * (w12 + w23)
762
+ * (w13 + w23)
763
+ / (
764
+ w12**2 * (w13 + w23)
765
+ + w13**2 * (w12 + w23)
766
+ + w23**2 * (w12 + w13)
767
+ + 3 * w12 * w13 * w23
768
+ )
769
+ )
770
+ assert np.isclose(K, test_data)
771
+
772
+ def test_kemeny_constant_weight0(self):
773
+ G = nx.Graph()
774
+ w12 = 0
775
+ w13 = 3
776
+ w23 = 4
777
+ G.add_edge(1, 2, weight=w12)
778
+ G.add_edge(1, 3, weight=w13)
779
+ G.add_edge(2, 3, weight=w23)
780
+ K = nx.kemeny_constant(G, weight="weight")
781
+ test_data = (
782
+ 3
783
+ / 2
784
+ * (w12 + w13)
785
+ * (w12 + w23)
786
+ * (w13 + w23)
787
+ / (
788
+ w12**2 * (w13 + w23)
789
+ + w13**2 * (w12 + w23)
790
+ + w23**2 * (w12 + w13)
791
+ + 3 * w12 * w13 * w23
792
+ )
793
+ )
794
+ assert np.isclose(K, test_data)
795
+
796
+ def test_kemeny_constant_selfloop(self):
797
+ G = nx.Graph()
798
+ w11 = 1
799
+ w12 = 2
800
+ w13 = 3
801
+ w23 = 4
802
+ G.add_edge(1, 1, weight=w11)
803
+ G.add_edge(1, 2, weight=w12)
804
+ G.add_edge(1, 3, weight=w13)
805
+ G.add_edge(2, 3, weight=w23)
806
+ K = nx.kemeny_constant(G, weight="weight")
807
+ test_data = (
808
+ (2 * w11 + 3 * w12 + 3 * w13)
809
+ * (w12 + w23)
810
+ * (w13 + w23)
811
+ / (
812
+ (w12 * w13 + w12 * w23 + w13 * w23)
813
+ * (w11 + 2 * w12 + 2 * w13 + 2 * w23)
814
+ )
815
+ )
816
+ assert np.isclose(K, test_data)
817
+
818
+ def test_kemeny_constant_complete_bipartite_graph(self):
819
+ # Theorem 1 in https://www.sciencedirect.com/science/article/pii/S0166218X20302912
820
+ n1 = 5
821
+ n2 = 4
822
+ G = nx.complete_bipartite_graph(n1, n2)
823
+ K = nx.kemeny_constant(G)
824
+ assert np.isclose(K, n1 + n2 - 3 / 2)
825
+
826
+ def test_kemeny_constant_path_graph(self):
827
+ # Theorem 2 in https://www.sciencedirect.com/science/article/pii/S0166218X20302912
828
+ n = 10
829
+ G = nx.path_graph(n)
830
+ K = nx.kemeny_constant(G)
831
+ assert np.isclose(K, n**2 / 3 - 2 * n / 3 + 1 / 2)