okstra 0.107.2 → 0.109.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (649) hide show
  1. package/package.json +1 -1
  2. package/runtime/BUILD.json +2 -2
  3. package/runtime/prompts/lead/okstra-lead-contract.md +1 -1
  4. package/runtime/prompts/profiles/_common-contract.md +3 -2
  5. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  6. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  7. package/runtime/python/okstra_ctl/session.py +44 -0
  8. package/runtime/python/okstra_project/__init__.py +2 -0
  9. package/runtime/python/okstra_project/state.py +36 -0
  10. package/runtime/python/okstra_token_usage/claude.py +15 -9
  11. package/runtime/python/okstra_token_usage/cli.py +23 -0
  12. package/runtime/python/okstra_token_usage/collect.py +163 -4
  13. package/runtime/python/okstra_vendor/__init__.py +41 -0
  14. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  15. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  16. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  17. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  18. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  19. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  20. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  21. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  22. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  23. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  24. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  25. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  26. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  27. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  28. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  29. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  30. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  31. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  36. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  37. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  38. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  39. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  40. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  41. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  42. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  43. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  44. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  45. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  46. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  47. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
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@@ -0,0 +1,554 @@
1
+ """
2
+ Famous social networks.
3
+ """
4
+
5
+ import networkx as nx
6
+
7
+ __all__ = [
8
+ "karate_club_graph",
9
+ "davis_southern_women_graph",
10
+ "florentine_families_graph",
11
+ "les_miserables_graph",
12
+ ]
13
+
14
+
15
+ @nx._dispatchable(graphs=None, returns_graph=True)
16
+ def karate_club_graph():
17
+ """Returns Zachary's Karate Club graph.
18
+
19
+ Each node in the returned graph has a node attribute 'club' that
20
+ indicates the name of the club to which the member represented by that node
21
+ belongs, either 'Mr. Hi' or 'Officer'. Each edge has a weight based on the
22
+ number of contexts in which that edge's incident node members interacted.
23
+
24
+ The dataset is derived from the 'Club After Split From Data' column of Table 3 in [1]_.
25
+ This was in turn derived from the 'Club After Fission' column of Table 1 in the
26
+ same paper. Note that the nodes are 0-indexed in NetworkX, but 1-indexed in the
27
+ paper (the 'Individual Number in Matrix C' column of Table 3 starts at 1). This
28
+ means, for example, that ``G.nodes[9]["club"]`` returns 'Officer', which
29
+ corresponds to row 10 of Table 3 in the paper.
30
+
31
+ Examples
32
+ --------
33
+ To get the name of the club to which a node belongs:
34
+
35
+ >>> G = nx.karate_club_graph()
36
+ >>> G.nodes[5]["club"]
37
+ 'Mr. Hi'
38
+ >>> G.nodes[9]["club"]
39
+ 'Officer'
40
+
41
+ References
42
+ ----------
43
+ .. [1] Zachary, Wayne W.
44
+ "An Information Flow Model for Conflict and Fission in Small Groups."
45
+ *Journal of Anthropological Research*, 33, 452--473, (1977).
46
+ """
47
+ # Create the set of all members, and the members of each club.
48
+ all_members = set(range(34))
49
+ club1 = {0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 16, 17, 19, 21}
50
+ # club2 = all_members - club1
51
+
52
+ G = nx.Graph()
53
+ G.add_nodes_from(all_members)
54
+ G.name = "Zachary's Karate Club"
55
+
56
+ zacharydat = """\
57
+ 0 4 5 3 3 3 3 2 2 0 2 3 2 3 0 0 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 2 0 0
58
+ 4 0 6 3 0 0 0 4 0 0 0 0 0 5 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 0 2 0 0 0
59
+ 5 6 0 3 0 0 0 4 5 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 3 0
60
+ 3 3 3 0 0 0 0 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
61
+ 3 0 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
62
+ 3 0 0 0 0 0 5 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
63
+ 3 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
64
+ 2 4 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
65
+ 2 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 4 3
66
+ 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
67
+ 2 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
68
+ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
69
+ 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
70
+ 3 5 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
71
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2
72
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4
73
+ 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
74
+ 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
75
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2
76
+ 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
77
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1
78
+ 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
79
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
80
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 4 0 2 0 0 5 4
81
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0 2 0 0
82
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 7 0 0
83
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 2
84
+ 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 4
85
+ 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2
86
+ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 4 0 0 0 0 0 3 2
87
+ 0 2 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
88
+ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 2 0 0 0 4 4
89
+ 0 0 2 0 0 0 0 0 3 0 0 0 0 0 3 3 0 0 1 0 3 0 2 5 0 0 0 0 0 4 3 4 0 5
90
+ 0 0 0 0 0 0 0 0 4 2 0 0 0 3 2 4 0 0 2 1 1 0 3 4 0 0 2 4 2 2 3 4 5 0"""
91
+
92
+ for row, line in enumerate(zacharydat.split("\n")):
93
+ thisrow = [int(b) for b in line.split()]
94
+ for col, entry in enumerate(thisrow):
95
+ if entry >= 1:
96
+ G.add_edge(row, col, weight=entry)
97
+
98
+ # Add the name of each member's club as a node attribute.
99
+ for v in G:
100
+ G.nodes[v]["club"] = "Mr. Hi" if v in club1 else "Officer"
101
+ return G
102
+
103
+
104
+ @nx._dispatchable(graphs=None, returns_graph=True)
105
+ def davis_southern_women_graph():
106
+ """Returns Davis Southern women social network.
107
+
108
+ This is a bipartite graph.
109
+
110
+ References
111
+ ----------
112
+ .. [1] A. Davis, Gardner, B. B., Gardner, M. R., 1941. Deep South.
113
+ University of Chicago Press, Chicago, IL.
114
+ """
115
+ G = nx.Graph()
116
+ # Top nodes
117
+ women = [
118
+ "Evelyn Jefferson",
119
+ "Laura Mandeville",
120
+ "Theresa Anderson",
121
+ "Brenda Rogers",
122
+ "Charlotte McDowd",
123
+ "Frances Anderson",
124
+ "Eleanor Nye",
125
+ "Pearl Oglethorpe",
126
+ "Ruth DeSand",
127
+ "Verne Sanderson",
128
+ "Myra Liddel",
129
+ "Katherina Rogers",
130
+ "Sylvia Avondale",
131
+ "Nora Fayette",
132
+ "Helen Lloyd",
133
+ "Dorothy Murchison",
134
+ "Olivia Carleton",
135
+ "Flora Price",
136
+ ]
137
+ G.add_nodes_from(women, bipartite=0)
138
+ # Bottom nodes
139
+ events = [
140
+ "E1",
141
+ "E2",
142
+ "E3",
143
+ "E4",
144
+ "E5",
145
+ "E6",
146
+ "E7",
147
+ "E8",
148
+ "E9",
149
+ "E10",
150
+ "E11",
151
+ "E12",
152
+ "E13",
153
+ "E14",
154
+ ]
155
+ G.add_nodes_from(events, bipartite=1)
156
+
157
+ G.add_edges_from(
158
+ [
159
+ ("Evelyn Jefferson", "E1"),
160
+ ("Evelyn Jefferson", "E2"),
161
+ ("Evelyn Jefferson", "E3"),
162
+ ("Evelyn Jefferson", "E4"),
163
+ ("Evelyn Jefferson", "E5"),
164
+ ("Evelyn Jefferson", "E6"),
165
+ ("Evelyn Jefferson", "E8"),
166
+ ("Evelyn Jefferson", "E9"),
167
+ ("Laura Mandeville", "E1"),
168
+ ("Laura Mandeville", "E2"),
169
+ ("Laura Mandeville", "E3"),
170
+ ("Laura Mandeville", "E5"),
171
+ ("Laura Mandeville", "E6"),
172
+ ("Laura Mandeville", "E7"),
173
+ ("Laura Mandeville", "E8"),
174
+ ("Theresa Anderson", "E2"),
175
+ ("Theresa Anderson", "E3"),
176
+ ("Theresa Anderson", "E4"),
177
+ ("Theresa Anderson", "E5"),
178
+ ("Theresa Anderson", "E6"),
179
+ ("Theresa Anderson", "E7"),
180
+ ("Theresa Anderson", "E8"),
181
+ ("Theresa Anderson", "E9"),
182
+ ("Brenda Rogers", "E1"),
183
+ ("Brenda Rogers", "E3"),
184
+ ("Brenda Rogers", "E4"),
185
+ ("Brenda Rogers", "E5"),
186
+ ("Brenda Rogers", "E6"),
187
+ ("Brenda Rogers", "E7"),
188
+ ("Brenda Rogers", "E8"),
189
+ ("Charlotte McDowd", "E3"),
190
+ ("Charlotte McDowd", "E4"),
191
+ ("Charlotte McDowd", "E5"),
192
+ ("Charlotte McDowd", "E7"),
193
+ ("Frances Anderson", "E3"),
194
+ ("Frances Anderson", "E5"),
195
+ ("Frances Anderson", "E6"),
196
+ ("Frances Anderson", "E8"),
197
+ ("Eleanor Nye", "E5"),
198
+ ("Eleanor Nye", "E6"),
199
+ ("Eleanor Nye", "E7"),
200
+ ("Eleanor Nye", "E8"),
201
+ ("Pearl Oglethorpe", "E6"),
202
+ ("Pearl Oglethorpe", "E8"),
203
+ ("Pearl Oglethorpe", "E9"),
204
+ ("Ruth DeSand", "E5"),
205
+ ("Ruth DeSand", "E7"),
206
+ ("Ruth DeSand", "E8"),
207
+ ("Ruth DeSand", "E9"),
208
+ ("Verne Sanderson", "E7"),
209
+ ("Verne Sanderson", "E8"),
210
+ ("Verne Sanderson", "E9"),
211
+ ("Verne Sanderson", "E12"),
212
+ ("Myra Liddel", "E8"),
213
+ ("Myra Liddel", "E9"),
214
+ ("Myra Liddel", "E10"),
215
+ ("Myra Liddel", "E12"),
216
+ ("Katherina Rogers", "E8"),
217
+ ("Katherina Rogers", "E9"),
218
+ ("Katherina Rogers", "E10"),
219
+ ("Katherina Rogers", "E12"),
220
+ ("Katherina Rogers", "E13"),
221
+ ("Katherina Rogers", "E14"),
222
+ ("Sylvia Avondale", "E7"),
223
+ ("Sylvia Avondale", "E8"),
224
+ ("Sylvia Avondale", "E9"),
225
+ ("Sylvia Avondale", "E10"),
226
+ ("Sylvia Avondale", "E12"),
227
+ ("Sylvia Avondale", "E13"),
228
+ ("Sylvia Avondale", "E14"),
229
+ ("Nora Fayette", "E6"),
230
+ ("Nora Fayette", "E7"),
231
+ ("Nora Fayette", "E9"),
232
+ ("Nora Fayette", "E10"),
233
+ ("Nora Fayette", "E11"),
234
+ ("Nora Fayette", "E12"),
235
+ ("Nora Fayette", "E13"),
236
+ ("Nora Fayette", "E14"),
237
+ ("Helen Lloyd", "E7"),
238
+ ("Helen Lloyd", "E8"),
239
+ ("Helen Lloyd", "E10"),
240
+ ("Helen Lloyd", "E11"),
241
+ ("Helen Lloyd", "E12"),
242
+ ("Dorothy Murchison", "E8"),
243
+ ("Dorothy Murchison", "E9"),
244
+ ("Olivia Carleton", "E9"),
245
+ ("Olivia Carleton", "E11"),
246
+ ("Flora Price", "E9"),
247
+ ("Flora Price", "E11"),
248
+ ]
249
+ )
250
+ G.graph["top"] = women
251
+ G.graph["bottom"] = events
252
+ return G
253
+
254
+
255
+ @nx._dispatchable(graphs=None, returns_graph=True)
256
+ def florentine_families_graph():
257
+ """Returns Florentine families graph.
258
+
259
+ References
260
+ ----------
261
+ .. [1] Ronald L. Breiger and Philippa E. Pattison
262
+ Cumulated social roles: The duality of persons and their algebras,1
263
+ Social Networks, Volume 8, Issue 3, September 1986, Pages 215-256
264
+ """
265
+ G = nx.Graph()
266
+ G.add_edge("Acciaiuoli", "Medici")
267
+ G.add_edge("Castellani", "Peruzzi")
268
+ G.add_edge("Castellani", "Strozzi")
269
+ G.add_edge("Castellani", "Barbadori")
270
+ G.add_edge("Medici", "Barbadori")
271
+ G.add_edge("Medici", "Ridolfi")
272
+ G.add_edge("Medici", "Tornabuoni")
273
+ G.add_edge("Medici", "Albizzi")
274
+ G.add_edge("Medici", "Salviati")
275
+ G.add_edge("Salviati", "Pazzi")
276
+ G.add_edge("Peruzzi", "Strozzi")
277
+ G.add_edge("Peruzzi", "Bischeri")
278
+ G.add_edge("Strozzi", "Ridolfi")
279
+ G.add_edge("Strozzi", "Bischeri")
280
+ G.add_edge("Ridolfi", "Tornabuoni")
281
+ G.add_edge("Tornabuoni", "Guadagni")
282
+ G.add_edge("Albizzi", "Ginori")
283
+ G.add_edge("Albizzi", "Guadagni")
284
+ G.add_edge("Bischeri", "Guadagni")
285
+ G.add_edge("Guadagni", "Lamberteschi")
286
+ return G
287
+
288
+
289
+ @nx._dispatchable(graphs=None, returns_graph=True)
290
+ def les_miserables_graph():
291
+ """Returns coappearance network of characters in the novel Les Miserables.
292
+
293
+ References
294
+ ----------
295
+ .. [1] D. E. Knuth, 1993.
296
+ The Stanford GraphBase: a platform for combinatorial computing,
297
+ pp. 74-87. New York: AcM Press.
298
+ """
299
+ G = nx.Graph()
300
+ G.add_edge("Napoleon", "Myriel", weight=1)
301
+ G.add_edge("MlleBaptistine", "Myriel", weight=8)
302
+ G.add_edge("MmeMagloire", "Myriel", weight=10)
303
+ G.add_edge("MmeMagloire", "MlleBaptistine", weight=6)
304
+ G.add_edge("CountessDeLo", "Myriel", weight=1)
305
+ G.add_edge("Geborand", "Myriel", weight=1)
306
+ G.add_edge("Champtercier", "Myriel", weight=1)
307
+ G.add_edge("Cravatte", "Myriel", weight=1)
308
+ G.add_edge("Count", "Myriel", weight=2)
309
+ G.add_edge("OldMan", "Myriel", weight=1)
310
+ G.add_edge("Valjean", "Labarre", weight=1)
311
+ G.add_edge("Valjean", "MmeMagloire", weight=3)
312
+ G.add_edge("Valjean", "MlleBaptistine", weight=3)
313
+ G.add_edge("Valjean", "Myriel", weight=5)
314
+ G.add_edge("Marguerite", "Valjean", weight=1)
315
+ G.add_edge("MmeDeR", "Valjean", weight=1)
316
+ G.add_edge("Isabeau", "Valjean", weight=1)
317
+ G.add_edge("Gervais", "Valjean", weight=1)
318
+ G.add_edge("Listolier", "Tholomyes", weight=4)
319
+ G.add_edge("Fameuil", "Tholomyes", weight=4)
320
+ G.add_edge("Fameuil", "Listolier", weight=4)
321
+ G.add_edge("Blacheville", "Tholomyes", weight=4)
322
+ G.add_edge("Blacheville", "Listolier", weight=4)
323
+ G.add_edge("Blacheville", "Fameuil", weight=4)
324
+ G.add_edge("Favourite", "Tholomyes", weight=3)
325
+ G.add_edge("Favourite", "Listolier", weight=3)
326
+ G.add_edge("Favourite", "Fameuil", weight=3)
327
+ G.add_edge("Favourite", "Blacheville", weight=4)
328
+ G.add_edge("Dahlia", "Tholomyes", weight=3)
329
+ G.add_edge("Dahlia", "Listolier", weight=3)
330
+ G.add_edge("Dahlia", "Fameuil", weight=3)
331
+ G.add_edge("Dahlia", "Blacheville", weight=3)
332
+ G.add_edge("Dahlia", "Favourite", weight=5)
333
+ G.add_edge("Zephine", "Tholomyes", weight=3)
334
+ G.add_edge("Zephine", "Listolier", weight=3)
335
+ G.add_edge("Zephine", "Fameuil", weight=3)
336
+ G.add_edge("Zephine", "Blacheville", weight=3)
337
+ G.add_edge("Zephine", "Favourite", weight=4)
338
+ G.add_edge("Zephine", "Dahlia", weight=4)
339
+ G.add_edge("Fantine", "Tholomyes", weight=3)
340
+ G.add_edge("Fantine", "Listolier", weight=3)
341
+ G.add_edge("Fantine", "Fameuil", weight=3)
342
+ G.add_edge("Fantine", "Blacheville", weight=3)
343
+ G.add_edge("Fantine", "Favourite", weight=4)
344
+ G.add_edge("Fantine", "Dahlia", weight=4)
345
+ G.add_edge("Fantine", "Zephine", weight=4)
346
+ G.add_edge("Fantine", "Marguerite", weight=2)
347
+ G.add_edge("Fantine", "Valjean", weight=9)
348
+ G.add_edge("MmeThenardier", "Fantine", weight=2)
349
+ G.add_edge("MmeThenardier", "Valjean", weight=7)
350
+ G.add_edge("Thenardier", "MmeThenardier", weight=13)
351
+ G.add_edge("Thenardier", "Fantine", weight=1)
352
+ G.add_edge("Thenardier", "Valjean", weight=12)
353
+ G.add_edge("Cosette", "MmeThenardier", weight=4)
354
+ G.add_edge("Cosette", "Valjean", weight=31)
355
+ G.add_edge("Cosette", "Tholomyes", weight=1)
356
+ G.add_edge("Cosette", "Thenardier", weight=1)
357
+ G.add_edge("Javert", "Valjean", weight=17)
358
+ G.add_edge("Javert", "Fantine", weight=5)
359
+ G.add_edge("Javert", "Thenardier", weight=5)
360
+ G.add_edge("Javert", "MmeThenardier", weight=1)
361
+ G.add_edge("Javert", "Cosette", weight=1)
362
+ G.add_edge("Fauchelevent", "Valjean", weight=8)
363
+ G.add_edge("Fauchelevent", "Javert", weight=1)
364
+ G.add_edge("Bamatabois", "Fantine", weight=1)
365
+ G.add_edge("Bamatabois", "Javert", weight=1)
366
+ G.add_edge("Bamatabois", "Valjean", weight=2)
367
+ G.add_edge("Perpetue", "Fantine", weight=1)
368
+ G.add_edge("Simplice", "Perpetue", weight=2)
369
+ G.add_edge("Simplice", "Valjean", weight=3)
370
+ G.add_edge("Simplice", "Fantine", weight=2)
371
+ G.add_edge("Simplice", "Javert", weight=1)
372
+ G.add_edge("Scaufflaire", "Valjean", weight=1)
373
+ G.add_edge("Woman1", "Valjean", weight=2)
374
+ G.add_edge("Woman1", "Javert", weight=1)
375
+ G.add_edge("Judge", "Valjean", weight=3)
376
+ G.add_edge("Judge", "Bamatabois", weight=2)
377
+ G.add_edge("Champmathieu", "Valjean", weight=3)
378
+ G.add_edge("Champmathieu", "Judge", weight=3)
379
+ G.add_edge("Champmathieu", "Bamatabois", weight=2)
380
+ G.add_edge("Brevet", "Judge", weight=2)
381
+ G.add_edge("Brevet", "Champmathieu", weight=2)
382
+ G.add_edge("Brevet", "Valjean", weight=2)
383
+ G.add_edge("Brevet", "Bamatabois", weight=1)
384
+ G.add_edge("Chenildieu", "Judge", weight=2)
385
+ G.add_edge("Chenildieu", "Champmathieu", weight=2)
386
+ G.add_edge("Chenildieu", "Brevet", weight=2)
387
+ G.add_edge("Chenildieu", "Valjean", weight=2)
388
+ G.add_edge("Chenildieu", "Bamatabois", weight=1)
389
+ G.add_edge("Cochepaille", "Judge", weight=2)
390
+ G.add_edge("Cochepaille", "Champmathieu", weight=2)
391
+ G.add_edge("Cochepaille", "Brevet", weight=2)
392
+ G.add_edge("Cochepaille", "Chenildieu", weight=2)
393
+ G.add_edge("Cochepaille", "Valjean", weight=2)
394
+ G.add_edge("Cochepaille", "Bamatabois", weight=1)
395
+ G.add_edge("Pontmercy", "Thenardier", weight=1)
396
+ G.add_edge("Boulatruelle", "Thenardier", weight=1)
397
+ G.add_edge("Eponine", "MmeThenardier", weight=2)
398
+ G.add_edge("Eponine", "Thenardier", weight=3)
399
+ G.add_edge("Anzelma", "Eponine", weight=2)
400
+ G.add_edge("Anzelma", "Thenardier", weight=2)
401
+ G.add_edge("Anzelma", "MmeThenardier", weight=1)
402
+ G.add_edge("Woman2", "Valjean", weight=3)
403
+ G.add_edge("Woman2", "Cosette", weight=1)
404
+ G.add_edge("Woman2", "Javert", weight=1)
405
+ G.add_edge("MotherInnocent", "Fauchelevent", weight=3)
406
+ G.add_edge("MotherInnocent", "Valjean", weight=1)
407
+ G.add_edge("Gribier", "Fauchelevent", weight=2)
408
+ G.add_edge("MmeBurgon", "Jondrette", weight=1)
409
+ G.add_edge("Gavroche", "MmeBurgon", weight=2)
410
+ G.add_edge("Gavroche", "Thenardier", weight=1)
411
+ G.add_edge("Gavroche", "Javert", weight=1)
412
+ G.add_edge("Gavroche", "Valjean", weight=1)
413
+ G.add_edge("Gillenormand", "Cosette", weight=3)
414
+ G.add_edge("Gillenormand", "Valjean", weight=2)
415
+ G.add_edge("Magnon", "Gillenormand", weight=1)
416
+ G.add_edge("Magnon", "MmeThenardier", weight=1)
417
+ G.add_edge("MlleGillenormand", "Gillenormand", weight=9)
418
+ G.add_edge("MlleGillenormand", "Cosette", weight=2)
419
+ G.add_edge("MlleGillenormand", "Valjean", weight=2)
420
+ G.add_edge("MmePontmercy", "MlleGillenormand", weight=1)
421
+ G.add_edge("MmePontmercy", "Pontmercy", weight=1)
422
+ G.add_edge("MlleVaubois", "MlleGillenormand", weight=1)
423
+ G.add_edge("LtGillenormand", "MlleGillenormand", weight=2)
424
+ G.add_edge("LtGillenormand", "Gillenormand", weight=1)
425
+ G.add_edge("LtGillenormand", "Cosette", weight=1)
426
+ G.add_edge("Marius", "MlleGillenormand", weight=6)
427
+ G.add_edge("Marius", "Gillenormand", weight=12)
428
+ G.add_edge("Marius", "Pontmercy", weight=1)
429
+ G.add_edge("Marius", "LtGillenormand", weight=1)
430
+ G.add_edge("Marius", "Cosette", weight=21)
431
+ G.add_edge("Marius", "Valjean", weight=19)
432
+ G.add_edge("Marius", "Tholomyes", weight=1)
433
+ G.add_edge("Marius", "Thenardier", weight=2)
434
+ G.add_edge("Marius", "Eponine", weight=5)
435
+ G.add_edge("Marius", "Gavroche", weight=4)
436
+ G.add_edge("BaronessT", "Gillenormand", weight=1)
437
+ G.add_edge("BaronessT", "Marius", weight=1)
438
+ G.add_edge("Mabeuf", "Marius", weight=1)
439
+ G.add_edge("Mabeuf", "Eponine", weight=1)
440
+ G.add_edge("Mabeuf", "Gavroche", weight=1)
441
+ G.add_edge("Enjolras", "Marius", weight=7)
442
+ G.add_edge("Enjolras", "Gavroche", weight=7)
443
+ G.add_edge("Enjolras", "Javert", weight=6)
444
+ G.add_edge("Enjolras", "Mabeuf", weight=1)
445
+ G.add_edge("Enjolras", "Valjean", weight=4)
446
+ G.add_edge("Combeferre", "Enjolras", weight=15)
447
+ G.add_edge("Combeferre", "Marius", weight=5)
448
+ G.add_edge("Combeferre", "Gavroche", weight=6)
449
+ G.add_edge("Combeferre", "Mabeuf", weight=2)
450
+ G.add_edge("Prouvaire", "Gavroche", weight=1)
451
+ G.add_edge("Prouvaire", "Enjolras", weight=4)
452
+ G.add_edge("Prouvaire", "Combeferre", weight=2)
453
+ G.add_edge("Feuilly", "Gavroche", weight=2)
454
+ G.add_edge("Feuilly", "Enjolras", weight=6)
455
+ G.add_edge("Feuilly", "Prouvaire", weight=2)
456
+ G.add_edge("Feuilly", "Combeferre", weight=5)
457
+ G.add_edge("Feuilly", "Mabeuf", weight=1)
458
+ G.add_edge("Feuilly", "Marius", weight=1)
459
+ G.add_edge("Courfeyrac", "Marius", weight=9)
460
+ G.add_edge("Courfeyrac", "Enjolras", weight=17)
461
+ G.add_edge("Courfeyrac", "Combeferre", weight=13)
462
+ G.add_edge("Courfeyrac", "Gavroche", weight=7)
463
+ G.add_edge("Courfeyrac", "Mabeuf", weight=2)
464
+ G.add_edge("Courfeyrac", "Eponine", weight=1)
465
+ G.add_edge("Courfeyrac", "Feuilly", weight=6)
466
+ G.add_edge("Courfeyrac", "Prouvaire", weight=3)
467
+ G.add_edge("Bahorel", "Combeferre", weight=5)
468
+ G.add_edge("Bahorel", "Gavroche", weight=5)
469
+ G.add_edge("Bahorel", "Courfeyrac", weight=6)
470
+ G.add_edge("Bahorel", "Mabeuf", weight=2)
471
+ G.add_edge("Bahorel", "Enjolras", weight=4)
472
+ G.add_edge("Bahorel", "Feuilly", weight=3)
473
+ G.add_edge("Bahorel", "Prouvaire", weight=2)
474
+ G.add_edge("Bahorel", "Marius", weight=1)
475
+ G.add_edge("Bossuet", "Marius", weight=5)
476
+ G.add_edge("Bossuet", "Courfeyrac", weight=12)
477
+ G.add_edge("Bossuet", "Gavroche", weight=5)
478
+ G.add_edge("Bossuet", "Bahorel", weight=4)
479
+ G.add_edge("Bossuet", "Enjolras", weight=10)
480
+ G.add_edge("Bossuet", "Feuilly", weight=6)
481
+ G.add_edge("Bossuet", "Prouvaire", weight=2)
482
+ G.add_edge("Bossuet", "Combeferre", weight=9)
483
+ G.add_edge("Bossuet", "Mabeuf", weight=1)
484
+ G.add_edge("Bossuet", "Valjean", weight=1)
485
+ G.add_edge("Joly", "Bahorel", weight=5)
486
+ G.add_edge("Joly", "Bossuet", weight=7)
487
+ G.add_edge("Joly", "Gavroche", weight=3)
488
+ G.add_edge("Joly", "Courfeyrac", weight=5)
489
+ G.add_edge("Joly", "Enjolras", weight=5)
490
+ G.add_edge("Joly", "Feuilly", weight=5)
491
+ G.add_edge("Joly", "Prouvaire", weight=2)
492
+ G.add_edge("Joly", "Combeferre", weight=5)
493
+ G.add_edge("Joly", "Mabeuf", weight=1)
494
+ G.add_edge("Joly", "Marius", weight=2)
495
+ G.add_edge("Grantaire", "Bossuet", weight=3)
496
+ G.add_edge("Grantaire", "Enjolras", weight=3)
497
+ G.add_edge("Grantaire", "Combeferre", weight=1)
498
+ G.add_edge("Grantaire", "Courfeyrac", weight=2)
499
+ G.add_edge("Grantaire", "Joly", weight=2)
500
+ G.add_edge("Grantaire", "Gavroche", weight=1)
501
+ G.add_edge("Grantaire", "Bahorel", weight=1)
502
+ G.add_edge("Grantaire", "Feuilly", weight=1)
503
+ G.add_edge("Grantaire", "Prouvaire", weight=1)
504
+ G.add_edge("MotherPlutarch", "Mabeuf", weight=3)
505
+ G.add_edge("Gueulemer", "Thenardier", weight=5)
506
+ G.add_edge("Gueulemer", "Valjean", weight=1)
507
+ G.add_edge("Gueulemer", "MmeThenardier", weight=1)
508
+ G.add_edge("Gueulemer", "Javert", weight=1)
509
+ G.add_edge("Gueulemer", "Gavroche", weight=1)
510
+ G.add_edge("Gueulemer", "Eponine", weight=1)
511
+ G.add_edge("Babet", "Thenardier", weight=6)
512
+ G.add_edge("Babet", "Gueulemer", weight=6)
513
+ G.add_edge("Babet", "Valjean", weight=1)
514
+ G.add_edge("Babet", "MmeThenardier", weight=1)
515
+ G.add_edge("Babet", "Javert", weight=2)
516
+ G.add_edge("Babet", "Gavroche", weight=1)
517
+ G.add_edge("Babet", "Eponine", weight=1)
518
+ G.add_edge("Claquesous", "Thenardier", weight=4)
519
+ G.add_edge("Claquesous", "Babet", weight=4)
520
+ G.add_edge("Claquesous", "Gueulemer", weight=4)
521
+ G.add_edge("Claquesous", "Valjean", weight=1)
522
+ G.add_edge("Claquesous", "MmeThenardier", weight=1)
523
+ G.add_edge("Claquesous", "Javert", weight=1)
524
+ G.add_edge("Claquesous", "Eponine", weight=1)
525
+ G.add_edge("Claquesous", "Enjolras", weight=1)
526
+ G.add_edge("Montparnasse", "Javert", weight=1)
527
+ G.add_edge("Montparnasse", "Babet", weight=2)
528
+ G.add_edge("Montparnasse", "Gueulemer", weight=2)
529
+ G.add_edge("Montparnasse", "Claquesous", weight=2)
530
+ G.add_edge("Montparnasse", "Valjean", weight=1)
531
+ G.add_edge("Montparnasse", "Gavroche", weight=1)
532
+ G.add_edge("Montparnasse", "Eponine", weight=1)
533
+ G.add_edge("Montparnasse", "Thenardier", weight=1)
534
+ G.add_edge("Toussaint", "Cosette", weight=2)
535
+ G.add_edge("Toussaint", "Javert", weight=1)
536
+ G.add_edge("Toussaint", "Valjean", weight=1)
537
+ G.add_edge("Child1", "Gavroche", weight=2)
538
+ G.add_edge("Child2", "Gavroche", weight=2)
539
+ G.add_edge("Child2", "Child1", weight=3)
540
+ G.add_edge("Brujon", "Babet", weight=3)
541
+ G.add_edge("Brujon", "Gueulemer", weight=3)
542
+ G.add_edge("Brujon", "Thenardier", weight=3)
543
+ G.add_edge("Brujon", "Gavroche", weight=1)
544
+ G.add_edge("Brujon", "Eponine", weight=1)
545
+ G.add_edge("Brujon", "Claquesous", weight=1)
546
+ G.add_edge("Brujon", "Montparnasse", weight=1)
547
+ G.add_edge("MmeHucheloup", "Bossuet", weight=1)
548
+ G.add_edge("MmeHucheloup", "Joly", weight=1)
549
+ G.add_edge("MmeHucheloup", "Grantaire", weight=1)
550
+ G.add_edge("MmeHucheloup", "Bahorel", weight=1)
551
+ G.add_edge("MmeHucheloup", "Courfeyrac", weight=1)
552
+ G.add_edge("MmeHucheloup", "Gavroche", weight=1)
553
+ G.add_edge("MmeHucheloup", "Enjolras", weight=1)
554
+ return G
@@ -0,0 +1,120 @@
1
+ """Generates graphs with a given eigenvector structure"""
2
+
3
+ import networkx as nx
4
+ from networkx.utils import np_random_state
5
+
6
+ __all__ = ["spectral_graph_forge"]
7
+
8
+
9
+ @np_random_state(3)
10
+ @nx._dispatchable(preserve_edge_attrs={"G": {"weight": 1}}, returns_graph=True)
11
+ def spectral_graph_forge(G, alpha, transformation="identity", seed=None):
12
+ """Returns a random simple graph with spectrum resembling that of `G`
13
+
14
+ This algorithm, called Spectral Graph Forge (SGF), computes the
15
+ eigenvectors of a given graph adjacency matrix, filters them and
16
+ builds a random graph with a similar eigenstructure.
17
+ SGF has been proved to be particularly useful for synthesizing
18
+ realistic social networks and it can also be used to anonymize
19
+ graph sensitive data.
20
+
21
+ Parameters
22
+ ----------
23
+ G : Graph
24
+ alpha : float
25
+ Ratio representing the percentage of eigenvectors of G to consider,
26
+ values in [0,1].
27
+ transformation : string, optional
28
+ Represents the intended matrix linear transformation, possible values
29
+ are 'identity' and 'modularity'
30
+ seed : integer, random_state, or None (default)
31
+ Indicator of numpy random number generation state.
32
+ See :ref:`Randomness<randomness>`.
33
+
34
+ Returns
35
+ -------
36
+ H : Graph
37
+ A graph with a similar eigenvector structure of the input one.
38
+
39
+ Raises
40
+ ------
41
+ NetworkXError
42
+ If transformation has a value different from 'identity' or 'modularity'
43
+
44
+ Notes
45
+ -----
46
+ Spectral Graph Forge (SGF) generates a random simple graph resembling the
47
+ global properties of the given one.
48
+ It leverages the low-rank approximation of the associated adjacency matrix
49
+ driven by the *alpha* precision parameter.
50
+ SGF preserves the number of nodes of the input graph and their ordering.
51
+ This way, nodes of output graphs resemble the properties of the input one
52
+ and attributes can be directly mapped.
53
+
54
+ It considers the graph adjacency matrices which can optionally be
55
+ transformed to other symmetric real matrices (currently transformation
56
+ options include *identity* and *modularity*).
57
+ The *modularity* transformation, in the sense of Newman's modularity matrix
58
+ allows the focusing on community structure related properties of the graph.
59
+
60
+ SGF applies a low-rank approximation whose fixed rank is computed from the
61
+ ratio *alpha* of the input graph adjacency matrix dimension.
62
+ This step performs a filtering on the input eigenvectors similar to the low
63
+ pass filtering common in telecommunications.
64
+
65
+ The filtered values (after truncation) are used as input to a Bernoulli
66
+ sampling for constructing a random adjacency matrix.
67
+
68
+ References
69
+ ----------
70
+ .. [1] L. Baldesi, C. T. Butts, A. Markopoulou, "Spectral Graph Forge:
71
+ Graph Generation Targeting Modularity", IEEE Infocom, '18.
72
+ https://arxiv.org/abs/1801.01715
73
+ .. [2] M. Newman, "Networks: an introduction", Oxford university press,
74
+ 2010
75
+
76
+ Examples
77
+ --------
78
+ >>> G = nx.karate_club_graph()
79
+ >>> H = nx.spectral_graph_forge(G, 0.3)
80
+ >>>
81
+ """
82
+ import numpy as np
83
+ import scipy as sp
84
+
85
+ available_transformations = ["identity", "modularity"]
86
+ alpha = np.clip(alpha, 0, 1)
87
+ A = nx.to_numpy_array(G)
88
+ n = A.shape[1]
89
+ level = round(n * alpha)
90
+
91
+ if transformation not in available_transformations:
92
+ msg = f"{transformation!r} is not a valid transformation. "
93
+ msg += f"Transformations: {available_transformations}"
94
+ raise nx.NetworkXError(msg)
95
+
96
+ K = np.ones((1, n)) @ A
97
+
98
+ B = A
99
+ if transformation == "modularity":
100
+ B -= K.T @ K / K.sum()
101
+
102
+ # Compute low-rank approximation of B
103
+ evals, evecs = np.linalg.eigh(B)
104
+ k = np.argsort(np.abs(evals))[::-1] # indices of evals in descending order
105
+ evecs[:, k[np.arange(level, n)]] = 0 # set smallest eigenvectors to 0
106
+ B = evecs @ np.diag(evals) @ evecs.T
107
+
108
+ if transformation == "modularity":
109
+ B += K.T @ K / K.sum()
110
+
111
+ B = np.clip(B, 0, 1)
112
+ np.fill_diagonal(B, 0)
113
+
114
+ for i in range(n - 1):
115
+ B[i, i + 1 :] = sp.stats.bernoulli.rvs(B[i, i + 1 :], random_state=seed)
116
+ B[i + 1 :, i] = np.transpose(B[i, i + 1 :])
117
+
118
+ H = nx.from_numpy_array(B)
119
+
120
+ return H