npm - molstar - Versions diffs - 2.3.6 → 2.4.0 - Mend

molstar 2.3.6 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1610) hide show

package/lib/mol-plugin-state/builder/structure/representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/mol-plugin-state/builder/structure.js CHANGED Viewed

@@ -34,7 +34,7 @@ var StructureBuilder = /** @class */ (function () {
                     case 0:
                         provider = typeof format === 'string' ? this.plugin.dataFormats.get(format) : format;
                         if (!provider)
-                            throw new Error("'" + format + "' is not a supported data format.");
+                            throw new Error("'".concat(format, "' is not a supported data format."));
                         return [4 /*yield*/, provider.parse(this.plugin, data)];
                     case 1:
                         trajectory = (_a.sent()).trajectory;
@@ -120,7 +120,7 @@ var StructureBuilder = /** @class */ (function () {
                     case 0:
                         state = this.dataState;
                         root = state.build().to(structure);
-                        keyTag = "structure-component-" + key;
+                        keyTag = "structure-component-".concat(key);
                         component = root.applyOrUpdateTagged(keyTag, StateTransforms.Model.StructureComponent, params, {
                             tags: tags ? __spreadArray(__spreadArray([], tags, true), [keyTag], false) : [keyTag]
                         });
@@ -150,7 +150,7 @@ var StructureBuilder = /** @class */ (function () {
             type: { name: 'static', params: type },
             nullIfEmpty: true,
             label: ((params === null || params === void 0 ? void 0 : params.label) || '').trim()
-        }, "static-" + type, params === null || params === void 0 ? void 0 : params.tags);
+        }, "static-".concat(type), params === null || params === void 0 ? void 0 : params.tags);
     };
     StructureBuilder.prototype.tryCreateComponentFromSelection = function (structure, selection, key, params) {
         var _this = this;

package/lib/mol-plugin-state/builder/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"structure.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/builder/structure.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAGH,OAAO,EAAE,cAAc,EAA0E,MAAM,iBAAiB,CAAC;AACzH,OAAO,EAAE,iBAAiB,IAAI,EAAE,EAAE,MAAM,YAAY,CAAC;AACrD,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAIhD,OAAO,EAAE,8BAA8B,EAAE,MAAM,4BAA4B,CAAC;AAE5E,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAC;AAC7D,OAAO,EAAE,aAAa,EAAE,MAAM,qDAAqD,CAAC;AACpF,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AAEzD,OAAO,EAAE,0BAA0B,EAAE,MAAM,uBAAuB,CAAC;AAEnE;IAgKI,0BAAmB,MAAqB;QAArB,WAAM,GAAN,MAAM,CAAe;QA5I/B,cAAS,GAAG,IAAI,0BAA0B,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACxD,mBAAc,GAAG,IAAI,8BAA8B,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IA4I1E,CAAC;IAhKD,sBAAY,uCAAS;aAArB;YACI,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QAClC,CAAC;;;OAAA;IAEa,8CAAmB,GAAjC,UAAkC,IAAqD,EAAE,MAA0D;;;;;;wBACzI,QAAQ,GAAG,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAA6B,CAAC,CAAC,CAAC,MAAM,CAAC;wBACvH,IAAI,CAAC,QAAQ;4BAAE,MAAM,IAAI,KAAK,CAAC,WAAI,MAAM,sCAAmC,CAAC,CAAC;wBACvD,qBAAM,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wBAAtD,UAAU,GAAK,CAAA,SAAuC,CAAA,WAA5C;wBAClB,sBAAO,UAAU,EAAC;;;;KACrB;IAEO,8CAAmB,GAA3B,UAA4B,IAAkC,EAAE,MAAqE;QACjI,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,UAAU,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC;aACpC,KAAK,CAAC,eAAe,CAAC,IAAI,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE,EAAE,CAAC;aAC3E,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,kBAAkB,EAAE,KAAK,CAAC,CAAC,CAAC;QAC7D,OAAO,UAAU,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACtD,CAAC;IAOD,0CAAe,GAAf,UAAgB,IAAoB,EAAE,MAAW;QAC7C,IAAM,IAAI,GAAG,cAAc,CAAC,eAAe,CAAC,IAAI,CAAC,SAAS,EAAE,IAAsB,CAAC,CAAC;QACpF,IAAI,CAAC,IAAI;YAAE,MAAM,IAAI,KAAK,CAAC,oBAAoB,CAAC,CAAC;QAEjD,IAAI,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE;YAC3B,OAAO,IAAI,CAAC,mBAAmB,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;SACjD;aAAM;YACH,OAAO,IAAI,CAAC,mBAAmB,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;SACjD;IACL,CAAC;IAED,sCAAW,GAAX,UAAY,UAAkD,EAAE,MAAiF,EAAE,YAA4C;QAC3L,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,KAAK,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,UAAU,CAAC;aACrC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,mBAAmB,EAAE,MAAM,IAAI,EAAE,UAAU,EAAE,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QAE5G,OAAO,KAAK,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACjD,CAAC;IAED,gDAAqB,GAArB,UAAsB,KAAwC,EAAE,MAAmF,EAAE,YAA4C;QAC7L,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,KAAK,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,KAAK,CAAC;aAChC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,qBAAqB,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QACzF,OAAO,KAAK,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACjD,CAAC;IAED,4CAAiB,GAAjB,UAAkB,KAAwC,EAAE,MAAsF,EAAE,YAA4C;;QAC5L,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,CAAC,GAAG,MAAA,MAAA,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,KAAK,CAAC,0CAAE,GAAG,0CAAE,IAAI,CAAC;QAClE,IAAI,CAAC,CAAC;YAAE,OAAO;QACf,IAAM,IAAI,GAAG,MAAA,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,0CAAE,UAAU,CAAC,IAAI,CAAC;QAC5D,IAAI,cAAc,CAAC,MAAM,CAAC,IAAI,CAAC;YAAE,OAAO;QAExC,IAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,KAAK,CAAC;aACnC,KAAK,CAAC,eAAe,CAAC,cAAc,CAAC,eAAe,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QAC5F,OAAO,QAAQ,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACpD,CAAC;IAED,0CAAe,GAAf,UAAgB,QAA2C,EAAE,MAAuC,EAAE,YAA4C;;QAC9I,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAE7B,IAAI,CAAC,MAAM,EAAE;YACT,IAAM,KAAK,GAAG,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;YAC9D,IAAI,KAAK,EAAE;gBACP,IAAM,IAAI,GAAG,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAC,MAAA,KAAK,CAAC,GAAG,0CAAE,IAAK,CAAC,CAAC;gBAC1D,IAAI,CAAC,IAAI,IAAI,CAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,UAAU,CAAC,MAAM,MAAK,CAAC;oBAAE,MAAM,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,EAAE,EAAG,EAAE,CAAC;aACvF;SACJ;QAED,IAAM,SAAS,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC;aACvC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,EAAG,EAAE,EAAE,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QAErI,OAAO,SAAS,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACrD,CAAC;IAED,oDAAyB,GAAzB,UAA0B,SAAgD,EAAE,MAAuF;QAC/J,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,KAAK,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,SAAS,CAAC;aACpC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,yBAAyB,EAAE,MAAM,CAAC,CAAC;QACpE,OAAO,KAAK,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACjD,CAAC;IAED,+CAAoB,GAApB,UAAqB,IAAqB;QACtC,OAAO,IAAI,CAAC,SAAS,CAAC,WAAW,KAAK,eAAe,CAAC,KAAK,CAAC,kBAAkB,CAAC;IACnF,CAAC;IAED,uDAAuD;IACjD,6CAAkB,GAAxB,UAAyB,SAAgD,EAAE,MAAgC,EAAE,GAAW,EAAE,IAAe;;;;;;;wBAC/H,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;wBAEvB,IAAI,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC;wBAEnC,MAAM,GAAG,8BAAuB,GAAG,CAAE,CAAC;wBACtC,SAAS,GAAG,IAAI,CAAC,mBAAmB,CAAC,MAAM,EAAE,eAAe,CAAC,KAAK,CAAC,kBAAkB,EAAE,MAAM,EAAE;4BACjG,IAAI,EAAE,IAAI,CAAC,CAAC,iCAAK,IAAI,UAAE,MAAM,UAAE,CAAC,CAAC,CAAC,MAAM,CAAC;yBAC5C,CAAC,CAAC;wBAEH,qBAAM,SAAS,CAAC,MAAM,EAAE,EAAA;;wBAAxB,SAAwB,CAAC;wBAEnB,QAAQ,GAAG,SAAS,CAAC,QAAQ,CAAC;6BAEhC,CAAA,CAAC,QAAQ,CAAC,IAA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package/lib/mol-plugin-state/formats/registry.js CHANGED Viewed

@@ -121,7 +121,7 @@ var DataFormatRegistry = /** @class */ (function () {
             return this._map.get(name);
         }
         else {
-            throw new Error("unknown data format name '" + name + "'");
+            throw new Error("unknown data format name '".concat(name, "'"));
         }
     };
     Object.defineProperty(DataFormatRegistry.prototype, "list", {

package/lib/mol-plugin-state/formats/registry.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/formats/registry.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,EAAE,wBAAwB,EAAE,MAAM,cAAc,CAAC;AACxD,OAAO,EAAE,oBAAoB,EAAE,MAAM,UAAU,CAAC;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,SAAS,CAAC;AAC9C,OAAO,EAAE,uBAAuB,EAAE,MAAM,aAAa,CAAC;AAEtD;IAsCI;QArCQ,UAAK,GAAqD,EAAE,CAAA;QAC5D,SAAI,GAAG,IAAI,GAAG,EAA8B,CAAA;QAC5C,gBAAW,GAA4B,SAAS,CAAA;QAChD,sBAAiB,GAA4B,SAAS,CAAA;QACtD,aAAQ,GAA2C,SAAS,CAAA;QAkChE,KAAsB,UAAoB,EAApB,6CAAoB,EAApB,kCAAoB,EAApB,IAAoB;YAA/B,IAAA,+BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA2B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC5D,KAAsB,UAAuB,EAAvB,mDAAuB,EAAvB,qCAAuB,EAAvB,IAAuB;YAAlC,IAAA,kCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA8B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC/D,KAAsB,UAAmB,EAAnB,2CAAmB,EAAnB,iCAAmB,EAAnB,IAAmB;YAA9B,IAAA,8BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA0B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC3D,KAAsB,UAAwB,EAAxB,qDAAwB,EAAxB,sCAAwB,EAAxB,IAAwB;YAAnC,IAAA,mCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA+B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;IACpE,CAAC;IApCD,sBAAI,qCAAK;aAAT;YACI,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAqB,EAA9C,CAA8C,CAAC,CAAC;QAC/E,CAAC;;;OAAA;IAED,sBAAI,0CAAU;aAAd;YACI,IAAI,IAAI,CAAC,WAAW;gBAAE,OAAO,IAAI,CAAC,WAAW,CAAC;YAC9C,IAAM,UAAU,GAAG,IAAI,GAAG,EAAU,CAAC;YACrC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAC1B,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;gBAC/D,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;YACnE,CAAC,CAAC,CAAC;YACH,IAAI,CAAC,WAAW,GAAG,UAAU,CAAC;YAC9B,OAAO,UAAU,CAAC;QACtB,CAAC;;;OAAA;IAED,sBAAI,gDAAgB;aAApB;YACI,IAAI,IAAI,CAAC,iBAAiB;gBAAE,OAAO,IAAI,CAAC,iBAAiB,CAAC;YAC1D,IAAM,gBAAgB,GAAG,IAAI,GAAG,EAAU,CAAC;YAC3C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAAO,OAAA,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,gBAAgB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAzB,CAAyB,CAAC,CAAA;aAAA,CAAC,CAAC;YAC3G,IAAI,CAAC,iBAAiB,GAAG,gBAAgB,CAAC;YAC1C,OAAO,gBAAgB,CAAC;QAC5B,CAAC;;;OAAA;IAED,sBAAI,uCAAO;aAAX;YACI,IAAI,IAAI,CAAC,QAAQ;gBAAE,OAAO,IAAI,CAAC,QAAQ,CAAC;YACxC,IAAM,OAAO,GAA+B,EAAE,CAAC;YAC/C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAkB;oBAAhB,IAAI,UAAA,EAAE,QAAQ,cAAA;gBAAO,OAAA,OAAO,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,KAAK,EAAE,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC;YAA7D,CAA6D,CAAC,CAAC;YAC1G,IAAI,CAAC,QAAQ,GAAG,OAAO,CAAC;YACxB,OAAO,OAAO,CAAC;QACnB,CAAC;;;OAAA;IAOA,CAAC;IAEM,mCAAM,GAAd;QACI,IAAI,CAAC,WAAW,GAAG,SAAS,CAAC;QAC7B,IAAI,CAAC,iBAAiB,GAAG,SAAS,CAAC;QACnC,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAC;IAC9B,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY,EAAE,QAA4B;QAC1C,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,MAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,CAAC;QACpC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;IAClC,CAAC;IAED,mCAAM,GAAN,UAAO,IAAY;QACf,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,IAAI,EAAf,CAAe,CAAC,EAAE,CAAC,CAAC,CAAC;QACjE,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC3B,CAAC;IAED,iCAAI,GAAJ,UAAK,IAAc,EAAE,eAA8E;QAC/F,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YACxC,IAAA,QAAQ,GAAK,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,SAAlB,CAAmB;YAEnC,IAAI,MAAM,GAAG,KAAK,CAAC;YACnB,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;iBAC5F,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;YACtG,IAAI,MAAM,IAAI,CAAC,CAAC,QAAQ,CAAC,YAAY,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,EAAE,eAAe,CAAC,IAAI,CAAC,CAAC;gBAAE,OAAO,QAAQ,CAAC;SAChH;QACD,OAAO;IACX,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY;QACZ,IAAI,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YACrB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAE,CAAC;SAC/B;aAAM;YACH,MAAM,IAAI,KAAK,CAAC,oCAA6B,IAAI,MAAG,CAAC,CAAC;SACzD;IACL,CAAC;IAED,sBAAI,oCAAI;aAAR;YACI,OAAO,IAAI,CAAC,KAAK,CAAC;QACtB,CAAC;;;OAAA;IACL,yBAAC;AAAD,CAAC,AAtFD,IAsFC"}

package/lib/mol-plugin-state/formats/volume.d.ts CHANGED Viewed

@@ -73,13 +73,13 @@ export declare const CubeProvider: {
                 ijkMax: any;
             }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
+            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                dynamicBonds: any;
                 id: any;
             }>, "assembly"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
             }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-                dynamicBonds: any;
                 radius: any;
             }>, "symmetry-mates"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
@@ -154,13 +154,13 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
                 ijkMax: any;
             }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
+            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                dynamicBonds: any;
                 id: any;
             }>, "assembly"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
             }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-                dynamicBonds: any;
                 radius: any;
             }>, "symmetry-mates"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;

package/lib/mol-plugin-state/formats/volume.js CHANGED Viewed

@@ -40,6 +40,7 @@ function tryObtainRecommendedIsoValue(plugin, volume) {
                                 return [3 /*break*/, 3];
                             case 2:
                                 e_1 = _a.sent();
+                                console.warn(e_1);
                                 return [3 /*break*/, 3];
                             case 3: return [2 /*return*/];
                         }

package/lib/mol-plugin-state/formats/volume.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/helpers/root-structure.d.ts CHANGED Viewed

@@ -18,13 +18,13 @@ export declare namespace RootStructureDefinition {
             ijkMax: Vec3;
         }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
+        }>, "model"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: boolean | undefined;
             id: string | undefined;
         }>, "assembly"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
         }>, "auto"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
-        }>, "model"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: boolean | undefined;
             radius: number;
         }>, "symmetry-mates"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;

package/lib/mol-plugin-state/helpers/root-structure.js CHANGED Viewed

@@ -20,19 +20,19 @@ export var RootStructureDefinition;
 (function (RootStructureDefinition) {
     function getParams(model, defaultValue) {
         var symmetry = model && ModelSymmetry.Provider.get(model);
-        var assemblyIds = symmetry ? symmetry.assemblies.map(function (a) { return [a.id, a.id + ": " + stringToWords(a.details)]; }) : [];
+        var assemblyIds = symmetry ? symmetry.assemblies.map(function (a) { return [a.id, "".concat(a.id, ": ").concat(stringToWords(a.details))]; }) : [];
         var showSymm = !symmetry ? true : !SpacegroupCell.isZero(symmetry.spacegroup.cell);
         var operatorOptions = [];
         if (symmetry) {
             var operators = symmetry.spacegroup.operators;
             for (var i = 0, il = operators.length; i < il; i++) {
-                operatorOptions.push([i, i + 1 + ": " + Spacegroup.getOperatorXyz(operators[i])]);
+                operatorOptions.push([i, "".concat(i + 1, ": ").concat(Spacegroup.getOperatorXyz(operators[i]))]);
             }
         }
         var asymIdsOptions = [];
         if (model) {
             model.properties.structAsymMap.forEach(function (v) {
-                var label = v.id === v.auth_id ? v.id : v.id + " [auth " + v.auth_id + "]";
+                var label = v.id === v.auth_id ? v.id : "".concat(v.id, " [auth ").concat(v.auth_id, "]");
                 asymIdsOptions.push([v.id, label]);
             });
         }
@@ -48,11 +48,11 @@ export var RootStructureDefinition;
                     operators: PD.ObjectList({
                         index: PD.Select(0, operatorOptions),
                         shift: PD.Vec3(Vec3(), { step: 1 }, { label: 'IJK', fieldLabels: { x: 'I', y: 'J', z: 'K' } })
-                    }, function (e) { return e.index + 1 + "_" + e.shift.map(function (a) { return a + 5; }).join(''); }, {
+                    }, function (e) { return "".concat(e.index + 1, "_").concat(e.shift.map(function (a) { return a + 5; }).join('')); }, {
                         defaultValue: []
                     }),
                     asymIds: PD.MultiSelect([], asymIdsOptions)
-                }, function (e) { return e.asymIds.length + " asym ids, " + e.operators.length + " operators"; }, {
+                }, function (e) { return "".concat(e.asymIds.length, " asym ids, ").concat(e.operators.length, " operators"); }, {
                     defaultValue: []
                 }) }, CommonStructureParams), { isFlat: true })
         };
@@ -93,12 +93,12 @@ export var RootStructureDefinition;
                             id = symmetry.assemblies[0].id;
                         }
                         if (!symmetry || symmetry.assemblies.length === 0) {
-                            plugin.log.warn("Model '" + model.entryId + "' has no assembly, returning model structure.");
+                            plugin.log.warn("Model '".concat(model.entryId, "' has no assembly, returning model structure."));
                         }
                         else {
                             asm = Symmetry.findAssembly(model, id || '');
                             if (!asm) {
-                                plugin.log.warn("Model '" + model.entryId + "' has no assembly called '" + id + "', returning model structure.");
+                                plugin.log.warn("Model '".concat(model.entryId, "' has no assembly called '").concat(id, "', returning model structure."));
                             }
                         }
                         base = Structure.ofModel(model, props);
@@ -110,7 +110,7 @@ export var RootStructureDefinition;
                         return [4 /*yield*/, StructureSymmetry.buildAssembly(base, id).runInContext(ctx)];
                     case 1:
                         s = _a.sent();
-                        objProps = { label: "Assembly " + id, description: Structure.elementDescription(s) };
+                        objProps = { label: "Assembly ".concat(id), description: Structure.elementDescription(s) };
                         return [2 /*return*/, new SO.Molecule.Structure(s, objProps)];
                 }
             });
@@ -126,7 +126,7 @@ export var RootStructureDefinition;
                         return [4 /*yield*/, StructureSymmetry.buildSymmetryRange(base, ijkMin, ijkMax).runInContext(ctx)];
                     case 1:
                         s = _a.sent();
-                        objProps = { label: "Symmetry [" + ijkMin + "] to [" + ijkMax + "]", description: Structure.elementDescription(s) };
+                        objProps = { label: "Symmetry [".concat(ijkMin, "] to [").concat(ijkMax, "]"), description: Structure.elementDescription(s) };
                         return [2 /*return*/, new SO.Molecule.Structure(s, objProps)];
                 }
             });
@@ -195,7 +195,7 @@ export var RootStructureDefinition;
                 if (params.name === 'symmetry-assembly') {
                     return [2 /*return*/, buildSymmetryAssembly(ctx, model, params.params.generators, symmetry, props)];
                 }
-                throw new Error("Unknown represetation type: " + params.name);
+                throw new Error("Unknown represetation type: ".concat(params.name));
             });
         });
     }

package/lib/mol-plugin-state/helpers/root-structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/helpers/structure-component.d.ts CHANGED Viewed

@@ -21,7 +21,7 @@ export declare type StructureComponentParams = PD.ValuesFor<ReturnType<typeof St
 export declare function createStructureComponent(a: Structure, params: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;
-}): SO.Molecule.Structure | StateObject<any, any>;
+}): StateObject<any, any> | SO.Molecule.Structure;
 export declare function updateStructureComponent(a: Structure, b: SO.Molecule.Structure, oldParams: StructureComponentParams, newParams: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;

package/lib/mol-plugin-state/helpers/structure-component.js CHANGED Viewed

@@ -86,7 +86,7 @@ export function createStructureComponent(a, params, cache) {
                     query = StructureSelectionQueries.coarse.query;
                     label = 'Coarse';
                     break;
-                default: throw new Error(params.type + " is a not valid complex element.");
+                default: throw new Error("".concat(params.type, " is a not valid complex element."));
             }
             var result = query(new QueryContext(a));
             component = Sel.unionStructure(result);
@@ -108,7 +108,7 @@ export function createStructureComponent(a, params, cache) {
     }
     if (params.nullIfEmpty && component.elementCount === 0)
         return StateObject.Null;
-    var props = { label: "" + (params.label || label || 'Component'), description: Structure.elementDescription(component) };
+    var props = { label: "".concat(params.label || label || 'Component'), description: Structure.elementDescription(component) };
     return new SO.Molecule.Structure(component, props);
 }
 export function updateStructureComponent(a, b, oldParams, newParams, cache) {
@@ -171,7 +171,7 @@ export function updateStructureComponent(a, b, oldParams, newParams, cache) {
     }
     if (oldParams.label !== newParams.label) {
         updated = true;
-        b.label = "" + (newParams.label || b.label);
+        b.label = "".concat(newParams.label || b.label);
     }
     return updated ? StateTransformer.UpdateResult.Updated : StateTransformer.UpdateResult.Unchanged;
 }

package/lib/mol-plugin-state/helpers/structure-component.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/helpers/structure-query.js CHANGED Viewed

@@ -41,7 +41,7 @@ var StructureQueryHelper;
     StructureQueryHelper.updateStructure = updateStructure;
     function updateStructureObject(obj, selection, label) {
         var s = Sel.unionStructure(selection);
-        obj.label = "" + (label || 'Selection');
+        obj.label = "".concat(label || 'Selection');
         obj.description = Structure.elementDescription(s);
         obj.data = s;
     }

package/lib/mol-plugin-state/helpers/structure-query.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>

package/lib/mol-plugin-state/helpers/structure-selection-query.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -12,6 +12,7 @@ import { compile } from '../../mol-script/runtime/query/compiler';
 import { SetUtils } from '../../mol-util/set';
 import { StateTransforms } from '../transforms';
 import { ElementNames } from '../../mol-model/structure/model/properties/atomic/types';
+import { SecondaryStructureProvider } from '../../mol-model-props/computed/secondary-structure';
 export var StructureSelectionCategory;
 (function (StructureSelectionCategory) {
     StructureSelectionCategory["Type"] = "Type";
@@ -223,7 +224,12 @@ var helix = StructureSelectionQuery('Helix', MS.struct.modifier.union([
             MS.core.type.bitflags([2 /* Helix */])
         ])
     })
-]), { category: StructureSelectionCategory.Structure });
+]), {
+    category: StructureSelectionCategory.Structure,
+    ensureCustomProperties: function (ctx, structure) {
+        return SecondaryStructureProvider.attach(ctx, structure);
+    }
+});
 var beta = StructureSelectionQuery('Beta Strand/Sheet', MS.struct.modifier.union([
     MS.struct.generator.atomGroups({
         'entity-test': _proteinEntityTest,
@@ -232,7 +238,12 @@ var beta = StructureSelectionQuery('Beta Strand/Sheet', MS.struct.modifier.union
             MS.core.type.bitflags([4 /* Beta */])
         ])
     })
-]), { category: StructureSelectionCategory.Structure });
+]), {
+    category: StructureSelectionCategory.Structure,
+    ensureCustomProperties: function (ctx, structure) {
+        return SecondaryStructureProvider.attach(ctx, structure);
+    }
+});
 var water = StructureSelectionQuery('Water', MS.struct.modifier.union([
     MS.struct.generator.atomGroups({
         'entity-test': MS.core.rel.eq([MS.ammp('entityType'), 'water'])
@@ -531,8 +542,8 @@ export function ResidueQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
     if (priority === void 0) { priority = 0; }
     var description = names.length === 1 && !StandardResidues.has(names[0])
-        ? "[" + names[0] + "] " + label
-        : label + " (" + names.join(', ') + ")";
+        ? "[".concat(names[0], "] ").concat(label)
+        : "".concat(label, " (").concat(names.join(', '), ")");
     return StructureSelectionQuery(description, MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'residue-test': MS.core.set.has([MS.set.apply(MS, names), MS.ammp('auth_comp_id')])
@@ -541,7 +552,7 @@ export function ResidueQuery(_a, category, priority) {
 }
 export function ElementSymbolQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
-    var description = label + " (" + names.join(', ') + ")";
+    var description = "".concat(label, " (").concat(names.join(', '), ")");
     return StructureSelectionQuery(description, MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'atom-test': MS.core.set.has([MS.set.apply(MS, names), MS.acp('elementSymbol')])
@@ -550,8 +561,8 @@ export function ElementSymbolQuery(_a, category, priority) {
 }
 export function EntityDescriptionQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
-    var description = "" + label;
-    return StructureSelectionQuery("" + label, MS.struct.modifier.union([
+    var description = "".concat(label);
+    return StructureSelectionQuery("".concat(label), MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'entity-test': MS.core.list.equal([MS.list.apply(MS, names), MS.ammp('entityDescription')])
         })